RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14091
(694 letters)
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 275 bits (705), Expect = 8e-86
Identities = 104/428 (24%), Positives = 161/428 (37%), Gaps = 74/428 (17%)
Query: 55 GSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQY 113
GS AL N + +E +P K + +A T G V G+
Sbjct: 1 GSPRRKALTNNNN-AGEAEQQPP------KAKRARIAFHLELPKRRTVLGNVLVCGNGDV 53
Query: 114 GQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTV 173
GQLG+G D R+ P V ISAG H+L +T G +Y++G G LG +T
Sbjct: 54 GQLGLG-EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS 112
Query: 174 EDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGI--FGQLGTGSNTKHKVP 231
ED SE + + G +HS L + GRV+A+GS G +G + + P
Sbjct: 113 EDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP 172
Query: 232 IELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKN 291
I+L IA+G H + L T+ +++T G + Q Q
Sbjct: 173 IDLMEG-TVCCSIASGADHLVILTTAGKVFTVGCA-----EQGQ---------------- 210
Query: 292 AALAEFSSEVTSPDANNETKIHLAPSP-SSASEKNETAEYASFMQSFLSSADDGM----- 345
L S S + + L P+ K A +A+ +F+ + +
Sbjct: 211 --LGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATG 268
Query: 346 -------------AHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQL 392
+ T + T I I G HH+++L+ + + GR G+L
Sbjct: 269 LNNFKQLAHETKGKEFALTPIKTELKD--IRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326
Query: 393 GNGSRK-EVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWA 451
G G K V PT + L+ I + CG S A+ GK+++
Sbjct: 327 GLGDVKDVVEKPTIV-----------------KKLTEKIVSVGCGEVCSYAVTIDGKLYS 369
Query: 452 WGTNVQGQ 459
WG+ V Q
Sbjct: 370 WGSGVNNQ 377
Score = 210 bits (537), Expect = 2e-61
Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 17/243 (6%)
Query: 37 SGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
S G H + L ++ ++++G + GALG T SE +P + K ++ G
Sbjct: 81 SAGGMHNLVLTKSGDIYSFGCNDEGALGRD-TSEDGSESKPDLIDLPGKAL--CISAGDS 137
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQ 154
H+ L G V+AWGS + +GL I + SI++G H + +T+
Sbjct: 138 HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTA 197
Query: 155 GKLYTWGWGVHGQLGLNT-----------VEDMSEPQLVKALEHEVIISAKGGHAHSIAL 203
GK++T G GQLG + D+ P + + + + +
Sbjct: 198 GKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMR 257
Query: 204 TKA-GRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYT 262
+WA G F QL + K + + I IA G H + L T +
Sbjct: 258 ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSV 317
Query: 263 WGS 265
G
Sbjct: 318 VGR 320
Score = 206 bits (527), Expect = 5e-60
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 25/248 (10%)
Query: 36 LSGGFYH-VALVRNRRVHTWGS--SSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVAC 92
+S G H L+ + RV WGS S+G +G ++ P ++ S+A
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK-RTPIDLM----EGTVCCSIAS 186
Query: 93 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPH-----------PRIIPALANIRVVS 140
G H ++LT++G V+ G ++ GQLG P + +
Sbjct: 187 GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA 246
Query: 141 ISAGQYHSLAITSQ-GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVI-ISAKGGHA 198
I A Y + SQ ++ G QL T +K ++ I+ G
Sbjct: 247 IWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQH 304
Query: 199 HSIALTKAGRVWAFGSGIFGQLGTGSNTKHK-VPIELYGLPEPISMIATGYFHNLALGTS 257
H++ LT + G +G+LG G P + L E I + G + A+
Sbjct: 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTID 364
Query: 258 NRLYTWGS 265
+LY+WGS
Sbjct: 365 GKLYSWGS 372
Score = 202 bits (516), Expect = 2e-58
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 23/247 (9%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGR 94
++ V G+ G LG G + + PV D ++ G
Sbjct: 29 IAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP----DAVDISAGG 84
Query: 95 LHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITS 153
+H LVLT SG +Y++G + G LG + + + + ISAG HS +
Sbjct: 85 MHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLE 144
Query: 154 QGKLYTWGWGV--HGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWA 211
G+++ WG HG +GL + P + I++ G H + LT AG+V+
Sbjct: 145 DGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFT 202
Query: 212 FGSGIFGQLGTGSNTKHKVPIELYGLP------------EPISMIATGYFHNLALGTSNR 259
G GQLG S +P I + + +
Sbjct: 203 VGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQ 262
Query: 260 -LYTWGS 265
++ G
Sbjct: 263 VIWATGL 269
Score = 198 bits (505), Expect = 6e-57
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 19/240 (7%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRN--------NKID 86
++ G H V L +V T G + G LG S E
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 87 VSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 144
++ T + S ++A G + + QL + I + I+ G
Sbjct: 244 FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGG 302
Query: 145 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDM-SEPQLVKALEHEVI-ISAKGGHAHSIA 202
Q+H++ +T+ K G +G+LGL V+D+ +P +VK L +++ + G S A
Sbjct: 303 QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGC--GEVCSYA 360
Query: 203 LTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP---EPISMIATGYFHNLALGTSNR 259
+T G+++++GSG+ QLG G PI + + + + + G H + L +++
Sbjct: 361 VTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420
Score = 126 bits (318), Expect = 2e-31
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIG-LIDQSPHPRIIPALANIRVVSISA 644
D+ +A G+ HT++LT+ G +YG+LG+G + D P I+ L ++VS+
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGC 353
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
G+ S A+T GKLY+WG GV+ QLG+ +D EP +V +
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSK 395
Score = 116 bits (292), Expect = 6e-28
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 585 RIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS 643
+ + +A T G V G+ GQLG+G D R+ P V IS
Sbjct: 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLG-EDILERKRLSPVAGIPDAVDIS 81
Query: 644 AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE 689
AG H+L +T G +Y++G G LG +T ED SE +
Sbjct: 82 AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG 127
Score = 115 bits (290), Expect = 8e-28
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
++ G H+ L G V+AWGS + +GL I + SI++G
Sbjct: 128 KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG 187
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
H + +T+ GK++T G GQLG + +S + + +
Sbjct: 188 ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQL 236
Score = 115 bits (289), Expect = 1e-27
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
D ++ G +H LVLT SG +Y++G + G LG + + + + ISAG
Sbjct: 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG 135
Query: 646 QYHSLAITSQGKLYTWGWGV--HGQLGLNTVEDMSEPQLVKALEH 688
HS + G+++ WG HG +GL + P +
Sbjct: 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV 180
Score = 112 bits (283), Expect = 7e-27
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPH-----------PRIIPA 633
S+A G H ++LT++G V+ G ++ GQLG P +
Sbjct: 179 TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 238
Query: 634 LANIRVVSISAGQYHSLAITSQ-GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISS 692
+I A Y + SQ ++ G QL T +K +I
Sbjct: 239 TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRH 298
Score = 92.4 bits (230), Expect = 4e-20
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSRE-GRVYTWGRNVDGQLGNGSRKEVHTPTA 405
+ PT + + K P I + + + + ++ G N QL + ++ + T
Sbjct: 230 LLRPTQLIITRAK-PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTP 288
Query: 406 ISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
I I+HI G ++ + K G G++
Sbjct: 289 I-----------------KTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326
Score = 85.5 bits (212), Expect = 7e-18
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRII--PALANIRVVSIS 643
+ SV CG + + +T G +Y+WGS QLG+G D P ++ ++ S
Sbjct: 347 KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLAS 406
Query: 644 AGQYHSLAITSQGK 657
G H++ + K
Sbjct: 407 GGGQHAIFLVKADK 420
Score = 80.1 bits (198), Expect = 4e-16
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
PT+V + I+ + CG S ++ +G++Y+WG V+ QLG G + P +
Sbjct: 335 VEKPTIVKK--LTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGK 448
+ + GG ++ + ++ K
Sbjct: 393 --------------VSKNTQGKHMLLASGGGQHAIFLVKADK 420
Score = 63.9 bits (156), Expect = 7e-11
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 610 GSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQL 669
GS + L + + P A + I+ T G + G G GQL
Sbjct: 1 GSPRRKALTNN--NNAGEAEQQPPKA--KRARIAFHLELPKRRTVLGNVLVCGNGDVGQL 56
Query: 670 GL-NTVEDMSEPQLVKALE 687
GL + + V +
Sbjct: 57 GLGEDILERKRLSPVAGIP 75
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 243 bits (622), Expect = 7e-74
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 7/234 (2%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGR 94
+S G H VAL+ V +WG G LG+G P + + SV CG
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDG--HQIVSVTCGA 77
Query: 95 LHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAIT 152
HT+ + SG VY+WG +G+LG G P I AL IR+ I+ G H LA+T
Sbjct: 78 DHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT 137
Query: 153 SQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAF 212
+G++ +WG +GQLGL ED PQ ++A E I G H+ A+T+ G ++ +
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 213 GSGIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGS 265
G G +G LG G T VP + E +SM+A G+ H +++ S LYT+G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251
Score = 238 bits (609), Expect = 6e-72
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 6/232 (2%)
Query: 37 SGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
+ G H +A+ V +WG + G LG G T P+ + F I + VA G
Sbjct: 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS-LVPQKIQAFEG--IRIKMVAAGAE 183
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQ 154
HT +T G +Y WG +YG LG+G P + + ++ ++ G H+++++
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 243
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS 214
G LYT+GW +GQLG +ED P ++AL + I GG H++ALT G+++ +G
Sbjct: 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGW 303
Query: 215 GIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGS 265
FGQ+G G+N P+++ + + ++ G+ H LA+ N ++ WG
Sbjct: 304 NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 355
Score = 237 bits (608), Expect = 7e-72
Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 7/234 (2%)
Query: 36 LSGGFYHVALVRN--RRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACG 93
++ G H V++WG +G LG+G + S + P P+ I + +ACG
Sbjct: 73 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHG--IRIKQIACG 129
Query: 94 RLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAIT 152
H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++AG H+ A+T
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT 189
Query: 153 SQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAF 212
G LY WGWG +G LGL D P+ V + E + G H+I+++ +G ++ +
Sbjct: 190 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 249
Query: 213 GSGIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTWGS 265
G +GQLG G H +P +L L IS I+ G+ H +AL + +LY WG
Sbjct: 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGW 303
Score = 224 bits (574), Expect = 7e-67
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGR 94
++ G H A+ + ++ WG YG LG G + PE V K +S VACG
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG-DRTDRLVPERVTSTGGEK--MSMVACGW 234
Query: 95 LHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITS 153
HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS G H++A+TS
Sbjct: 235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTS 294
Query: 154 QGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFG 213
GKLY WGW GQ+G+ D P V+ + + ++ G H++A+T+ V+A+G
Sbjct: 295 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWG 354
Query: 214 SGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS 265
G GQLG G + P + L A+G + + +W S
Sbjct: 355 RGTNGQLGIGESVDRNFPKIIEALS---VDGASGQHIESSNIDPSSGKSWVS 403
Score = 206 bits (526), Expect = 4e-60
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 7/202 (3%)
Query: 67 TMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSP 125
++ E R V ++ G H++ L S V +WG + GQLG G + P
Sbjct: 2 MAEDMAADEVTAPPR----KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 57
Query: 126 HPRIIPALANIRVVSISAGQYHSLAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKA 184
P + AL ++VS++ G H++A + G ++Y+WGWG G+LG D+ P +KA
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 117
Query: 185 LEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP-EPISM 243
L I G +H +A+T G V ++G GQLG G VP ++ I M
Sbjct: 118 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKM 177
Query: 244 IATGYFHNLALGTSNRLYTWGS 265
+A G H A+ LY WG
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGW 199
Score = 179 bits (456), Expect = 4e-50
Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 9/181 (4%)
Query: 37 SGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
+ G+ H +++ + ++T+G S YG LG+G P + N +S ++ G
Sbjct: 231 ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH-LIPHKLEALSN--SFISQISGGWR 287
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQ 154
HT+ LTS G +Y WG +++GQ+G+G P + + +VV +S G H+LA+T +
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 347
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS 214
++ WG G +GQLG+ D + P++++AL V ++ G + ++ S
Sbjct: 348 NNVFAWGRGTNGQLGIGESVDRNFPKIIEALS--VDGAS--GQHIESSNIDPSSGKSWVS 403
Query: 215 G 215
Sbjct: 404 P 404
Score = 143 bits (363), Expect = 2e-37
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 119 GLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE 178
G+ + + +V+ ISAG HS+A+ S + +WG G GQLG ED
Sbjct: 1 GMAEDMAADEVTAPPR--KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPS 58
Query: 179 PQLVKALEHEVIISAKGGHAHSIALTKAG-RVWAFGSGIFGQLGTGSNTKHKVPIELYGL 237
P + AL+ I+S G H++A +++G V+++G G FG+LG G+++ P+ + L
Sbjct: 59 PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKAL 118
Query: 238 -PEPISMIATGYFHNLALGTSNRLYTWGS 265
I IA G H LA+ + +WG
Sbjct: 119 HGIRIKQIACGDSHCLAVTMEGEVQSWGR 147
Score = 135 bits (341), Expect = 2e-34
Identities = 36/107 (33%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
+S ++ G HT+ LTS G +Y WG +++GQ+G+G P + + +VV +S G
Sbjct: 278 FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG 337
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISS 692
H+LA+T + ++ WG G +GQLG+ D + P++++AL + +S
Sbjct: 338 WRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGAS 384
Score = 133 bits (338), Expect = 4e-34
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 587 DVSSVACGRLHTLVLTSSG--VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
+ SV CG HT+ + SG VY+WG +G+LG G P I AL IR+ I+
Sbjct: 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC 128
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G H LA+T +G++ +WG +GQLGL ED PQ ++A E
Sbjct: 129 GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171
Score = 133 bits (338), Expect = 5e-34
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + +ACG H L +T G V +WG +Q GQLG+G + S P+ I A IR+ ++A
Sbjct: 121 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 180
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G H+ A+T G LY WGWG +G LGL D P+ V +
Sbjct: 181 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223
Score = 130 bits (330), Expect = 5e-33
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
+S VACG HT+ ++ SG +Y +G S+YGQLG G ++ P + AL+N + IS
Sbjct: 225 EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG 284
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
G H++A+TS GKLY WGW GQ+G+ D P V+
Sbjct: 285 GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326
Score = 130 bits (329), Expect = 6e-33
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
I + VA G HT +T G +Y WG +YG LG+G P + + ++ ++
Sbjct: 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
G H+++++ G LYT+GW +GQLG +ED P ++AL
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 274
Score = 127 bits (321), Expect = 8e-32
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
V ++ G H++ L S V +WG + GQLG G + P P + AL ++VS++ G
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 646 QYHSLAITSQG-KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE 689
H++A + G ++Y+WGWG G+LG D+ P +KAL
Sbjct: 77 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 121
Score = 100 bits (251), Expect = 8e-23
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 17/113 (15%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
+ P + I + G H+ ++ +G +Y WG G LG G R + P +
Sbjct: 161 SLVPQKIQAFE-GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 219
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ + + CG ++++ SG ++ +G + GQ
Sbjct: 220 TS----------------TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 256
Score = 98.5 bits (246), Expect = 4e-22
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 349 SPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISI 408
P V TS + + CG H++ +S G +YT+G + GQLG+G ++ P +
Sbjct: 215 VPERV-TSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL-- 271
Query: 409 NIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
L +S I I+ G ++A+ GK++ WG N GQ
Sbjct: 272 --------------EALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 308
Score = 98.5 bits (246), Expect = 4e-22
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
H+ P ++ + I QI G H+M L+ +G++Y WG N GQ+G G+ + +P +
Sbjct: 265 HLIPHKLEAL-SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ ++CG +LA+ E V+AWG GQ
Sbjct: 324 RF----------------PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 360
Score = 98.1 bits (245), Expect = 5e-22
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 349 SPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISI 408
+P + H I QI CG H + ++ EG V +WGRN +GQLG G ++ P I
Sbjct: 111 TPLPIKALHGI-RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169
Query: 409 NIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
IK + G + + A+ E G ++ WG G
Sbjct: 170 ----------------FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGN 204
Score = 94.6 bits (236), Expect = 6e-21
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 343 DGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREG-RVYTWGRNVDGQLGNGSRKEVH 401
D SPT + I+ + CG H++ S+ G VY+WG G+LG+G+ ++
Sbjct: 52 DAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLF 110
Query: 402 TPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
TP I L IK I CG LA+ G+V +WG N GQ
Sbjct: 111 TPLPIKA----------------LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQ 152
Score = 90.8 bits (226), Expect = 1e-19
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDE 421
+L I G HS+ L V +WGR DGQLG+G ++ +PT +S
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA------------- 64
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESG-KVWAWGTNVQGQ 459
L I +TCG D ++A +SG +V++WG G+
Sbjct: 65 ---LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGR 100
Score = 87.7 bits (218), Expect = 1e-18
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
V V+CG HTL +T V+AWG GQLGIG P+II AL+ V ++G
Sbjct: 330 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS----VDGASG 385
Query: 646 QYHSLAITSQGKLYTWGWG 664
Q+ + +W
Sbjct: 386 QHIESSNIDPSSGKSWVSP 404
Score = 80.0 bits (198), Expect = 4e-16
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
SP V ++Q+ CG H++ ++ V+ WGR +GQLG G + + P I
Sbjct: 317 QCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 375
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTN 455
LS G + + +W +
Sbjct: 376 EA-----------------LSVD---GASGQHIESSNIDPSSGKSWVSP 404
Score = 72.7 bits (179), Expect = 9e-14
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 620 GLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE 679
G+ + + +V+ ISAG HS+A+ S + +WG G GQLG ED
Sbjct: 1 GMAEDMAADEVTAPPR--KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPS 58
Query: 680 PQLVKALE 687
P + AL+
Sbjct: 59 PTQLSALD 66
Score = 46.5 bits (111), Expect = 2e-05
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 413 TSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ ++++DE + + I+ G S+A+ V +WG GQ
Sbjct: 2 MAEDMAADEVTAPPRK-VLIISAGASHSVALLSGDIVCSWGRGEDGQ 47
Score = 34.1 bits (79), Expect = 0.16
Identities = 5/41 (12%), Positives = 10/41 (24%), Gaps = 5/41 (12%)
Query: 349 SPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVD 389
P +++ V G H +W +
Sbjct: 371 FPKIIEALSV-----DGASGQHIESSNIDPSSGKSWVSPAE 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 236 bits (605), Expect = 1e-71
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 8/242 (3%)
Query: 29 VEIPEVPLSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDV 87
V I +V ++ G H +AL V++WG + G LG+G P + R I+V
Sbjct: 105 VFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC-DRPRVIESLRG--IEV 161
Query: 88 SSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRV--VSISAG 144
VA G H+ +T++G +Y WG +YG+LG + P+++ AL RV ++ +G
Sbjct: 162 VDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221
Query: 145 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALT 204
+L +T +++WG G +G+LG + P + +L ++ + G S+ALT
Sbjct: 222 DAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT 281
Query: 205 KAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRLYTW 263
K+G V+ +G G + +LG GS+ + P ++ GL + + IATG H + +YTW
Sbjct: 282 KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTW 341
Query: 264 GS 265
G
Sbjct: 342 GD 343
Score = 236 bits (605), Expect = 2e-71
Identities = 58/235 (24%), Positives = 112/235 (47%), Gaps = 9/235 (3%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
S G ++ + ++ WG + G LG +++ P P + + G
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGI-EGAKVKVPTPCEALAT--LRPVQLIGGEQT 64
Query: 97 TLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALAN--IRVVSISAGQYHSLAITS 153
+T+ G +YA G G+LGIG + P ++ ++ + I+ V++++G H LA++S
Sbjct: 65 LFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS 124
Query: 154 QGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFG 213
+G++Y+WG G+LG P+++++L ++ G AHS +T AG ++ +G
Sbjct: 125 EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 214 SGIFGQLGTGSNTKHKVPIELYGLP-EPISMIA--TGYFHNLALGTSNRLYTWGS 265
G +G+LG + P + L + IA +G L L + +++WG
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239
Score = 219 bits (561), Expect = 3e-65
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 5/227 (2%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGR 94
++ G H + ++TWG YG LG+ +P+ V + +++ + G
Sbjct: 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHS-DSEDQLKPKLVEALQGHRVVDIACGSGD 222
Query: 95 LHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITS 153
TL LT V++WG YG+LG G D P I +L + VV + G S+A+T
Sbjct: 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTK 282
Query: 154 QGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFG 213
G +YTWG G + +LG + + + P+ V+ L+ + +I+ G H + T+ G V+ +G
Sbjct: 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Query: 214 SGIFGQLGTGSNTKHKVPIELYGL-PEPISMIATGYFHNLALGTSNR 259
GQLG G+ + P + L + ++ +A G H LA ++++
Sbjct: 343 DNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAW-STSK 388
Score = 197 bits (503), Expect = 5e-57
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 4/185 (2%)
Query: 85 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 143
+ L SG +Y WG + GQLG + P ALA +R V +
Sbjct: 1 MHHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG 60
Query: 144 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVI--ISAKGGHAHSI 201
G+ A+T+ GKLY G+G G+LG+ E +S P L+++++H I ++ G H +
Sbjct: 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL 120
Query: 202 ALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP-EPISMIATGYFHNLALGTSNRL 260
AL+ G V+++G G+LG G+ + P + L + +A G H+ + + L
Sbjct: 121 ALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDL 180
Query: 261 YTWGS 265
YTWG
Sbjct: 181 YTWGK 185
Score = 136 bits (346), Expect = 3e-35
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 585 RIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSIS 643
I +V G H L L+S G VY+WG ++ G+LG G PR+I +L I VV ++
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165
Query: 644 AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
AG HS +T+ G LYTWG G +G+LG + ED +P+LV+AL+
Sbjct: 166 AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209
Score = 135 bits (342), Expect = 1e-34
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
+ V V CG ++ LT SG VY WG Y +LG G D PR + L +V++I+
Sbjct: 265 LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT 324
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G H + T G++YTWG GQLG T + P+LV AL+
Sbjct: 325 GSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367
Score = 128 bits (324), Expect = 2e-32
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALAN--IRVVSI 642
+ + G +T+ G +YA G G+LGIG + P ++ ++ + I+ V++
Sbjct: 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV 112
Query: 643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
++G H LA++S+G++Y+WG G+LG P+++++L
Sbjct: 113 NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLR 157
Score = 126 bits (318), Expect = 1e-31
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRV--VSI 642
I+V VA G H+ +T++G +Y WG +YG+LG + P+++ AL RV ++
Sbjct: 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218
Query: 643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
+G +L +T +++WG G +G+LG + P + +L
Sbjct: 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263
Score = 125 bits (316), Expect = 3e-31
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 586 IDVSSVAC--GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSI 642
V +AC G TL LT V++WG YG+LG G D P I +L + VV +
Sbjct: 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKV 270
Query: 643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALE 687
G S+A+T G +YTWG G + +LG + + + P+ V+ L+
Sbjct: 271 ECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ 315
Score = 125 bits (315), Expect = 4e-31
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISA 644
+ L SG +Y WG + GQLG + P ALA +R V +
Sbjct: 1 MHHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG 60
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
G+ A+T+ GKLY G+G G+LG+ E +S P L+++++H V
Sbjct: 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV 110
Score = 101 bits (253), Expect = 4e-23
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 349 SPTLVDT-SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAIS 407
+PTL+++ HV + + G H + LS EG VY+WG DG+LG+G+R P I
Sbjct: 95 TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVI- 153
Query: 408 INIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
L + + GG S + +G ++ WG G+
Sbjct: 154 ---------------ESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190
Score = 100 bits (250), Expect = 9e-23
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
P +D S ++++ CG S+ L++ G VYTWG+ +LG+GS V P +
Sbjct: 253 CKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
L + I G + E G+V+ WG N +GQ
Sbjct: 312 QG----------------LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ 348
Score = 95.4 bits (238), Expect = 3e-21
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 349 SPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISI 408
PT + +Q+ G ++ +G++Y G G+LG G + V TPT +
Sbjct: 43 VPTPCEALATL-RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLES 101
Query: 409 NIVMTSSEVSSDERSPLLSSSIKH--ITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ IK + GG LA+ G+V++WG G+
Sbjct: 102 ----------------IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK 138
Score = 92.7 bits (231), Expect = 3e-20
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
P ++++ ++ + G HS ++ G +YTWG+ G+LG+ ++ P +
Sbjct: 147 CDRPRVIESLR-GIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 205
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGG--DFSLAMDESGKVWAWGTNVQGQ 459
L + I CG +L + + VW+WG G+
Sbjct: 206 EA----------------LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Score = 90.4 bits (225), Expect = 2e-19
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 349 SPTLVDTSHVKAPILQICCGC--HHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
P LV + ++ I CG ++ L+ + V++WG G+LG G P I
Sbjct: 201 KPKLV-EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
L + + CG FS+A+ +SG V+ WG +
Sbjct: 260 DS----------------LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHR 296
Score = 89.6 bits (223), Expect = 3e-19
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 364 QICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERS 423
++ G +Y WG N GQLG +V PT
Sbjct: 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEA--------------- 49
Query: 424 PLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
L + + G A+ GK++A G G+
Sbjct: 50 -LATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGR 84
Score = 86.9 bits (216), Expect = 2e-18
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
V ++A G LH + T G VY WG + GQLG G + PR++ AL +V ++ G
Sbjct: 318 KVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACG 377
Query: 646 QYHSLAITS 654
H+LA ++
Sbjct: 378 SAHTLAWST 386
Score = 77.3 bits (191), Expect = 3e-15
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
P V ++ I G H + + +G VYTWG N +GQLG+G+ + P +
Sbjct: 305 VRRPRQVQGLQ-GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDES 446
+ L + + CG +LA S
Sbjct: 364 AA----------------LQGKKVNRVACGSAHTLAWSTS 387
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 587 DVSSVACGRLHTLVLTSS 604
V+ VACG HTL ++S
Sbjct: 370 KVNRVACGSAHTLAWSTS 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 211 bits (539), Expect = 8e-62
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 28/253 (11%)
Query: 36 LSGGFYH-VALVRNRRVHTWGS--SSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVAC 92
+S G H AL + RV WGS + G +G M + P V + V VA
Sbjct: 116 VSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV----QLDVPVVKVAS 171
Query: 93 GRLHTLVLTSSG-VYAWGSSQYGQLGIG-----------LIDQSPHPRIIPA-----LAN 135
G H ++LT+ G +Y G + GQLG +++ P+ + +
Sbjct: 172 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231
Query: 136 IRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEH--EVIISA 193
+R G Y + AI+ +G +Y +G + QLG E PQ + + ++ + +
Sbjct: 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 291
Query: 194 KGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK-VPIELYGLPEPISMIATGYFHNL 252
GG H++ + G+ ++ G +G+LG G + K +P + LP +S +A G
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA-VSSVACGASVGY 350
Query: 253 ALGTSNRLYTWGS 265
A+ R++ WG
Sbjct: 351 AVTKDGRVFAWGM 363
Score = 210 bits (536), Expect = 2e-61
Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 23/240 (9%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPT----------MSQISEPEPVVWFRNNK 84
++ G H V L + ++T G G LG P + ++ P+ V+
Sbjct: 169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS 228
Query: 85 ---IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALAN--IRV 138
+ CG T ++ G VY +G S Y QLG + P+ + + N
Sbjct: 229 RGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSW 288
Query: 139 VSISAGQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALEHEVIISAKGGH 197
V S GQ+H++ + S+GK Y+ G +G+LGL E+ S P L+ L ++ G
Sbjct: 289 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVAC--GA 346
Query: 198 AHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLP---EPISMIATGYFHNLAL 254
+ A+TK GRV+A+G G QLGTG + P+E+ G + +++G H + L
Sbjct: 347 SVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
Score = 209 bits (535), Expect = 3e-61
Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 28/261 (10%)
Query: 27 PLVEIPEVPLSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKI 85
P + H V T G G LG G + + +P V
Sbjct: 4 PPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE---- 59
Query: 86 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 144
DV G +HT+ L+ SG VY++G + G LG + +VV +SAG
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG 119
Query: 145 QYHSLAITSQGKLYTWGWGV--HGQLGL-NTVEDMSEPQLVKALEHEVIISAKGGHAHSI 201
H+ A+T G+++ WG +G +GL ++ P V+ V +++ G+ H +
Sbjct: 120 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLV 177
Query: 202 ALTKAGRVWAFGSGIFGQLGTGSNTKH---------------KVPIELYGLPE--PISMI 244
LT G ++ G G GQLG V ++ G
Sbjct: 178 MLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDA 237
Query: 245 ATGYFHNLALGTSNRLYTWGS 265
G + A+ +Y +G
Sbjct: 238 FCGAYFTFAISHEGHVYGFGL 258
Score = 171 bits (435), Expect = 3e-47
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 37 SGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
G Y A+ V+ +G S+Y LG P+ + F+N+ + G+
Sbjct: 238 FCGAYFTFAISHEGHVYGFGLSNYHQLGTP-GTESCFIPQNLTSFKNSTKSWVGFSGGQH 296
Query: 96 HTLVLTSSG-VYAWGSSQYGQLGIGL-IDQSPHPRIIPALANIRVVSISAGQYHSLAITS 153
HT+ + S G Y+ G ++YG+LG+G ++ P +I L V S++ G A+T
Sbjct: 297 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTK 354
Query: 154 QGKLYTWGWGVHGQLGLNTVEDMSEPQLV--KALEHEVIISAKGGHAHSIALTKAG 207
G+++ WG G + QLG ED P + K LE+ V++S G H++ L K
Sbjct: 355 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 410
Score = 133 bits (338), Expect = 5e-34
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 131 PALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALEHEV 189
A+ S H T G + T G G GQLGL V + +P LV E V
Sbjct: 3 SPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVV 62
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQLG--TGSNTKHKVPIELYGLPEPISMIATG 247
A G H++ L+K+G+V++FG G LG T VP ++ L E + ++ G
Sbjct: 63 QAEA--GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG 119
Query: 248 YFHNLALGTSNRLYTWGS 265
H AL R++ WGS
Sbjct: 120 DSHTAALTDDGRVFLWGS 137
Score = 126 bits (319), Expect = 1e-31
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 575 VRSHHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPA 633
V + + CG T ++ G VY +G S Y QLG + P+ + +
Sbjct: 221 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Query: 634 LAN--IRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALE 687
N V S GQ+H++ + S+GK Y+ G +G+LGL E+ S P L+ L
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP 337
Score = 122 bits (307), Expect = 5e-30
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGL-IDQSPHPRIIPALANIRVVSIS 643
+ G+ HT+ + S G Y+ G ++YG+LG+G ++ P +I L V S++
Sbjct: 286 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVA 343
Query: 644 AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
G A+T G+++ WG G + QLG ED P +
Sbjct: 344 CGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386
Score = 118 bits (298), Expect = 7e-29
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIG-----------LIDQSPHPRIIPA 633
+ V VA G H ++LT+ G +Y G + GQLG +++ P+ +
Sbjct: 164 VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVML 223
Query: 634 -----LANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEH 688
++R G Y + AI+ +G +Y +G + QLG E PQ + + ++
Sbjct: 224 KSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN 283
Query: 689 EISSLV 694
S V
Sbjct: 284 STKSWV 289
Score = 118 bits (297), Expect = 1e-28
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 588 VSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGL-IDQSPHPRIIPALANIRVVSISAG 645
S H T G V G GQLG+G + + P ++ + VV AG
Sbjct: 10 PKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAG 67
Query: 646 QYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE 689
H++ ++ G++Y++G G LG +T + SE K E
Sbjct: 68 GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE 111
Score = 114 bits (287), Expect = 2e-27
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAG 645
DV G +HT+ L+ SG VY++G + G LG + +VV +SAG
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG 119
Query: 646 QYHSLAITSQGKLYTWGWGV--HGQLGL-NTVEDMSEPQLVKALEH 688
H+ A+T G+++ WG +G +GL ++ P V+
Sbjct: 120 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 165
Score = 109 bits (275), Expect = 7e-26
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGS--SQYGQLGIG-LIDQSPHPRIIPALANIRVVSI 642
V V+ G HT LT G V+ WGS G +G+ + +S P + VV +
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP--VVKV 169
Query: 643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEISSLV 694
++G H + +T+ G LYT G G GQLG + + V
Sbjct: 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 221
Score = 104 bits (262), Expect = 3e-24
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 350 PTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISIN 409
P V P++++ G H ++L+ +G +YT G GQLG + +
Sbjct: 157 PVQVQLDV---PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213
Query: 410 IVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
++ V R + CG F+ A+ G V+ +G + Q
Sbjct: 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263
Score = 96.6 bits (241), Expect = 2e-21
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 347 HMSPTLVDT-SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNG-SRKEVHTPT 404
P + + + + G HH++ + EG+ Y+ GR G+LG G +E PT
Sbjct: 272 CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 331
Query: 405 AISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
IS ++ + CG A+ + G+V+AWG Q
Sbjct: 332 LISRL------------------PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Score = 96.2 bits (240), Expect = 2e-21
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 18/115 (15%)
Query: 350 PTLVDTSHVKA----PILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTA 405
P V + CG + + +S EG VY +G + QLG + P
Sbjct: 218 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQN 277
Query: 406 ISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
+ + S + G ++ MD GK ++ G G++
Sbjct: 278 L--------------TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 318
Score = 90.8 bits (226), Expect = 1e-19
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 350 PTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISIN 409
P LV ++Q G H++ LS+ G+VY++G N +G LG + E +
Sbjct: 52 PALVSIP---EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV- 107
Query: 410 IVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGT--NVQGQ 459
L + ++ G + A+ + G+V+ WG+ + G
Sbjct: 108 ---------------ELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 144
Score = 89.3 bits (222), Expect = 4e-19
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWG--RNVDGQLGNGSR-KEVHTP 403
M P V+ ++Q+ G H+ L+ +GRV+ WG R+ +G +G K+ P
Sbjct: 101 EMVPGKVELQE---KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVP 157
Query: 404 TAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ ++ + + G D + + G ++ G QGQ
Sbjct: 158 VQVQLD------------------VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195
Score = 87.4 bits (217), Expect = 2e-18
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 358 VKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGS-RKEVHTPTAISINIVMTSSE 416
A H + G V T G+ GQLG G E P +S
Sbjct: 6 ADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--------- 56
Query: 417 VSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
+ + GG ++ + +SG+V+++G N +G
Sbjct: 57 ---------IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90
Score = 84.3 bits (209), Expect = 2e-17
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIP--ALANIRVVSIS 643
VSSVACG +T G V+AWG QLG G + + P + L N V+S+S
Sbjct: 338 AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVS 397
Query: 644 AGQYHSLAITSQG 656
+G H++ +
Sbjct: 398 SGGQHTVLLVKDK 410
Score = 80.4 bits (199), Expect = 3e-16
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 342 DDGMAHMSPTLVDT-SHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEV 400
+ PTL+ V + CG ++++GRV+ WG + QLG G ++
Sbjct: 322 EGAEEKSIPTLISRLPAVS----SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDA 377
Query: 401 HTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESG 447
+P + L + + ++ GG ++ + +
Sbjct: 378 WSPVEMMGK--------------QLENRVVLSVSSGGQHTVLLVKDK 410
Score = 66.6 bits (163), Expect = 8e-12
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 632 PALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALE 687
A+ S H T G + T G G GQLGL V + +P LV E
Sbjct: 3 SPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE 59
Score = 50.8 bits (122), Expect = 1e-06
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
RSP + K E G V G GQ
Sbjct: 2 RSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQ 39
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 209 bits (534), Expect = 1e-60
Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 29/275 (10%)
Query: 15 TQIPSEPEELSEPLVEIPEVPLSGGFYH-VALVRNRRVHTWGS--SSYGALGNGP-TMSQ 70
+IP E ++ ++ + AL N V+ WG+ + G LG +
Sbjct: 134 AKIPRESFPPLAEGHKVVQL--AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKI 191
Query: 71 ISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRI 129
P V F + +A G+ H L L G V+AWG+ Q QLG ++++ +
Sbjct: 192 QKTPWKVPTFSKYN--IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTL 249
Query: 130 IPALANIR-VVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVED----MSEPQLVKA 184
P +R V I++G+ H A+T KL +WG GQ G++ + +++P+ +
Sbjct: 250 DPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL 309
Query: 185 LEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK--------------V 230
++ VI S G HS+ L++ G +++ G ++G + + +
Sbjct: 310 PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPL 369
Query: 231 PIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS 265
P +L + +A G H++A+ + Y+WG
Sbjct: 370 PTKLNNV-PKFKSVAAGSHHSVAVAQNGIAYSWGF 403
Score = 208 bits (532), Expect = 3e-60
Identities = 61/270 (22%), Positives = 101/270 (37%), Gaps = 41/270 (15%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQ--ISEPEPVVWFRNNKIDVSSVAC 92
+ H V+ + WG+ S LG GP + P + ++ + S A
Sbjct: 15 AQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAV 74
Query: 93 GRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRII--------------------- 130
G +HTL L V++WG + G LG + + +
Sbjct: 75 GGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPA 134
Query: 131 --------PALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL----NTVEDMSE 178
P +VV ++A S A+ S G++Y WG + L + ++
Sbjct: 135 KIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKT 194
Query: 179 PQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVP---IELY 235
P V I+ G H + L + G V+A+G+G QLG + ++ +
Sbjct: 195 PWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254
Query: 236 GLPEPISMIATGYFHNLALGTSNRLYTWGS 265
GL + IA+G H AL N+L +WG
Sbjct: 255 GLR-HVKYIASGENHCFALTKDNKLVSWGL 283
Score = 203 bits (519), Expect = 2e-58
Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 38/268 (14%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQ------------------------ 70
+ G H +AL V +WG + GALG + ++
Sbjct: 72 FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131
Query: 71 --ISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGL----IDQ 123
P V +A + L S+G VYAWG+ + + +G I
Sbjct: 132 TPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKI 191
Query: 124 SPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLV- 182
P +P + +V ++ G+ H L + +G ++ WG G QLG +E L
Sbjct: 192 QKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDP 251
Query: 183 KALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK----VPIELYGLP 238
+ + G H ALTK ++ ++G FGQ G + + P L
Sbjct: 252 RPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPD 311
Query: 239 -EPISMIATGYFHNLALGTSNRLYTWGS 265
I IA G H+L L LY+ G
Sbjct: 312 NVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Score = 196 bits (501), Expect = 8e-56
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 28/244 (11%)
Query: 36 LSGGFYH-VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGR 94
L+ G H + L V WG+ LG M + + V +A G
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRK-VMERFRLKTLDPRPFGLR-HVKYIASGE 266
Query: 95 LHTLVLTSSG-VYAWGSSQYGQLGIGLIDQS----PHPRIIPALANIRVVSISAGQYHSL 149
H LT + +WG +Q+GQ G+ + P+ + N+ + SI+AG++HSL
Sbjct: 267 NHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSL 326
Query: 150 AITSQGKLYTWGWGVHGQLGL--------------NTVEDMSEPQLVKALEHEVIISAKG 195
++ G LY+ G ++G+ + P + + ++A
Sbjct: 327 ILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAA-- 384
Query: 196 GHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHK---VPIELYGLP-EPISMIATGYFHN 251
G HS+A+ + G +++G G +G G I+ I ++ G +
Sbjct: 385 GSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFS 444
Query: 252 LALG 255
++ G
Sbjct: 445 VSGG 448
Score = 170 bits (432), Expect = 2e-46
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 40/220 (18%)
Query: 86 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQS---PHPRIIPALA--NIRVV 139
+ + H + ++ WG+ +LG+G + ++ PR+ P L +++
Sbjct: 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKII 70
Query: 140 SISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKA--------------- 184
S + G H+LA+ + +++WG G LG +T + + + A
Sbjct: 71 SFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELE 130
Query: 185 --------------LEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTG----SNT 226
E ++ S AL G V+A+G+ + G
Sbjct: 131 STPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIK 190
Query: 227 KHKVPIELYGL-PEPISMIATGYFHNLALGTSNRLYTWGS 265
K P ++ I +A G H L L ++ WG+
Sbjct: 191 IQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGN 230
Score = 145 bits (368), Expect = 1e-37
Identities = 63/293 (21%), Positives = 102/293 (34%), Gaps = 39/293 (13%)
Query: 190 IISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIE------LYGLPEPISM 243
II+A+ + H + ++ +G+G +LG G K+K L I
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 244 IATGYFHNLALGTSNRLYTWG-----------SSPQVLRSQSQAQKRARMMCYSNQVKNA 292
A G H LAL + +++WG S+ + A + +
Sbjct: 72 FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131
Query: 293 ALAEFSSEVTSPDANNETKIHLAPSPS-SASEKNETAEYA--SFMQSFL---SSADDGMA 346
A+ E P A + LA + + S + + YA +F + D
Sbjct: 132 TPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKI 191
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAI 406
+P V T K I+Q+ G H + L EG V+ WG QLG + T
Sbjct: 192 QKTPWKVPTFS-KYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLD 250
Query: 407 SINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
P +K+I G + A+ + K+ +WG N GQ
Sbjct: 251 P---------------RPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQ 288
Score = 136 bits (343), Expect = 2e-34
Identities = 49/273 (17%), Positives = 81/273 (29%), Gaps = 43/273 (15%)
Query: 428 SSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWF 487
S I + + ++ WGT + EL + + P+
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIFCWGTG-------SMCELGLGPLAKNKEVKRPRLNPFL 62
Query: 488 DDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNV-AWSLND----- 541
KI + +L L +SNV +W ND
Sbjct: 63 PRDEAKIISF-----------AVGGMHTL----ALD-------EESNVWSWGCNDVGALG 100
Query: 542 ---ITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHT 598
++ E I R L V +A +
Sbjct: 101 RDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMS 160
Query: 599 LVLTSSG-VYAWGSSQYGQLGIGL----IDQSPHPRIIPALANIRVVSISAGQYHSLAIT 653
L S+G VYAWG+ + + +G I P +P + +V ++ G+ H L +
Sbjct: 161 CALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD 220
Query: 654 SQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKAL 686
+G ++ WG G QLG +E L
Sbjct: 221 EEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP 253
Score = 122 bits (307), Expect = 1e-29
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIR-VVSIS 643
++ +A G+ H L L G V+AWG+ Q QLG ++++ + P +R V I+
Sbjct: 204 YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIA 263
Query: 644 AGQYHSLAITSQGKLYTWGWGVHGQLGLNTVED----MSEPQLVKALEH 688
+G+ H A+T KL +WG GQ G++ + +++P+ + ++
Sbjct: 264 SGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN 312
Score = 120 bits (302), Expect = 5e-29
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 578 HHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQS---PHPRIIPA 633
HH M + + H + ++ WG+ +LG+G + ++ PR+ P
Sbjct: 3 HHHHHHMS-HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPF 61
Query: 634 LA--NIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHE 689
L +++S + G H+LA+ + +++WG G LG +T + + + A +
Sbjct: 62 LPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSS 119
Score = 117 bits (294), Expect = 5e-28
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 569 LCDKDIVRSHHQMLIMRI----DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLID 623
L K + R + L R V +A G H LT + +WG +Q+GQ G+
Sbjct: 236 LGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV 295
Query: 624 QS----PHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE 679
+ P+ + N+ + SI+AG++HSL ++ G LY+ G ++G+
Sbjct: 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEY 355
Query: 680 P 680
Sbjct: 356 T 356
Score = 114 bits (287), Expect = 4e-27
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQS--------------PHPRI 630
+ + S+A G H+L+L+ G +Y+ G ++GI + P P
Sbjct: 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK 372
Query: 631 IPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE-PQLVKALE 687
+ + S++AG +HS+A+ G Y+WG+G +GL ED +E P +K
Sbjct: 373 LNNVPK--FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTA 428
Score = 100 bits (252), Expect = 1e-22
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 34/136 (25%)
Query: 586 IDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLIDQSPHPRII------------- 631
+ S A G +HTL L V++WG + G LG + + +
Sbjct: 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 632 ----------------PALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL---- 671
P +VV ++A S A+ S G++Y WG + L
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186
Query: 672 NTVEDMSEPQLVKALE 687
+ ++ P V
Sbjct: 187 DKIKIQKTPWKVPTFS 202
Score = 100 bits (251), Expect = 1e-22
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 339 SSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRK 398
+DG P + I I G HHS++LS++G +Y+ GR ++G
Sbjct: 293 EDVEDGALVTKPKRLA-LPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN 351
Query: 399 EVHTPTAISIN---IVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTN 455
V +++++ + K + G S+A+ ++G ++WG
Sbjct: 352 LPEYTYKDVHGKARAVPLPTKLNNVPK-------FKSVAAGSHHSVAVAQNGIAYSWGFG 404
Query: 456 VQGQ 459
Sbjct: 405 ETYA 408
Score = 94.1 bits (234), Expect = 2e-20
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 347 HMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKE----VHT 402
TL + I G +H L+++ ++ +WG N GQ G E V
Sbjct: 244 FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303
Query: 403 PTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
P +++ + I+ I G SL + + G +++ G +
Sbjct: 304 PKRLAL----------------PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFE 344
Score = 82.1 bits (203), Expect = 1e-16
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 587 DVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIG-LIDQSPHPRIIP--ALANIRVVSI 642
SVA G H++ + +G Y+WG + +G+G D + P I A + ++ +
Sbjct: 378 KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILV 437
Query: 643 SAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSE 679
G S++ + + + ++D+
Sbjct: 438 GCGGQFSVSGG----VKLSDEDAEKR--ADEMDDLEH 468
Score = 76.0 bits (187), Expect = 1e-14
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 20/133 (15%)
Query: 332 SFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQ 391
+ + G A P ++V + G HHS+ +++ G Y+WG
Sbjct: 350 DNLPEYTYKDVHGKARAVPLPTKLNNVP-KFKSVAAGSHHSVAVAQNGIAYSWGFGETYA 408
Query: 392 LGNGSRK-EVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVW 450
+G G + + PT I + + +I + CGG FS++ G V
Sbjct: 409 VGLGPFEDDTEVPTRI--------------KNTATQDHNIILVGCGGQFSVS----GGVK 450
Query: 451 AWGTNVQGQVPRY 463
+ + +
Sbjct: 451 LSDEDAEKRADEM 463
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 149 bits (379), Expect = 9e-41
Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 53/231 (22%)
Query: 36 LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
++GG++H ++ +V WG++ G L V ++A G
Sbjct: 29 IAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQS---------------GVDAIAAGNY 73
Query: 96 HTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
H+L L V AWG ++ GQ +PA A V +I+AG + S A+ G
Sbjct: 74 HSLALKDGEVIAWGGNEDGQTT------------VPAEARSGVDAIAAGAWASYALKD-G 120
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
K+ WG GQ + E + ++A G ++ K G V A+G
Sbjct: 121 KVIAWGDDSDGQTTVPA-------------EAQSGVTALDGGVYTALAVKNGGVIAWGDN 167
Query: 216 IFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSS 266
FGQ + + V +A G FH+LAL ++ WG +
Sbjct: 168 YFGQTTVPAEAQSGV-----------DDVAGGIFHSLAL-KDGKVIAWGDN 206
Score = 133 bits (336), Expect = 5e-35
Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 52/215 (24%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGS 110
V WG ++ G ++ V ++A G H L L V WG+
Sbjct: 4 VVAWGGNNDW--GEATVPAEAQS------------GVDAIAGGYFHGLALKGGKVLGWGA 49
Query: 111 SQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL 170
+ GQL + QS V +I+AG YHSLA+ G++ WG GQ +
Sbjct: 50 NLNGQLTMPAATQS------------GVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTV 96
Query: 171 NTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKV 230
+A I+A G S AL K G+V A+G GQ + + V
Sbjct: 97 P----------AEARSGVDAIAA--GAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGV 143
Query: 231 PIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS 265
+ + G + LA+ + + WG
Sbjct: 144 -----------TALDGGVYTALAV-KNGGVIAWGD 166
Score = 132 bits (334), Expect = 1e-34
Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 56/219 (25%)
Query: 36 LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
++ G + +++ +V WG S G V+++ G
Sbjct: 107 IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQS---------------GVTALDGGVY 151
Query: 96 HTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
L + + GV AWG + +GQ +PA A V ++ G +HSLA+ G
Sbjct: 152 TALAVKNGGVIAWGDNYFGQTT------------VPAEAQSGVDDVAGGIFHSLALKD-G 198
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSG 215
K+ WG + Q + +AL I++ G +S+AL K G+V A+GS
Sbjct: 199 KVIAWGDNRYKQTTVP----------TEALSGVSAIAS--GEWYSLAL-KNGKVIAWGSS 245
Query: 216 IFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLAL 254
S I G AL
Sbjct: 246 RTAPSSVQSGVSS---------------IEAGPNAAYAL 269
Score = 109 bits (275), Expect = 8e-27
Identities = 38/172 (22%), Positives = 59/172 (34%), Gaps = 44/172 (25%)
Query: 36 LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
L GG Y V+N V WG + +G V VA G
Sbjct: 146 LDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQS---------------GVDDVAGGIF 190
Query: 96 HTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
H+L L V AWG ++Y Q + S V +I++G+++SLA+ + G
Sbjct: 191 HSLALKDGKVIAWGDNRYKQTTVPTEALS------------GVSAIASGEWYSLALKN-G 237
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAG 207
K+ WG + + + S + G + AL
Sbjct: 238 KVIAWGSSRTAPSSVQS----------------GVSSIEAGPNAAYALKGGS 273
Score = 107 bits (269), Expect = 5e-26
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 37/164 (22%)
Query: 102 SSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWG 161
++ V AWG + +PA A V +I+ G +H LA+ GK+ WG
Sbjct: 1 ATSVVAWGGNNDWGEA-----------TVPAEAQSGVDAIAGGYFHGLALKG-GKVLGWG 48
Query: 162 WGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLG 221
++GQL + V A I+A G+ HS+AL K G V A+G GQ
Sbjct: 49 ANLNGQLTMPAATQSG----VDA------IAA--GNYHSLAL-KDGEVIAWGGNEDGQTT 95
Query: 222 TGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGS 265
+ + V IA G + + AL ++ WG
Sbjct: 96 VPAEARSGV-----------DAIAAGAWASYAL-KDGKVIAWGD 127
Score = 89.7 bits (223), Expect = 5e-20
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
V ++A G H L L V WG++ GQL + QS V +I+AG
Sbjct: 25 GVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQS------------GVDAIAAGN 72
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNT 673
YHSLA+ G++ WG GQ +
Sbjct: 73 YHSLALKD-GEVIAWGGNEDGQTTVPA 98
Score = 88.5 bits (220), Expect = 1e-19
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
V VA G H+L L V AWG ++Y Q + S V +I++G+
Sbjct: 181 GVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS------------GVSAIASGE 228
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNT 673
++SLA+ + GK+ WG + +
Sbjct: 229 WYSLALKN-GKVIAWGSSRTAPSSVQS 254
Score = 86.6 bits (215), Expect = 6e-19
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
V ++A G H+L L V AWG ++ GQ + PA A V +I+AG
Sbjct: 64 GVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTV------------PAEARSGVDAIAAGA 111
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNT 673
+ S A+ GK+ WG GQ +
Sbjct: 112 WASYALKD-GKVIAWGDDSDGQTTVPA 137
Score = 82.0 bits (203), Expect = 2e-17
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
V+++ G L + + GV AWG + +GQ + PA A V ++ G
Sbjct: 142 GVTALDGGVYTALAVKNGGVIAWGDNYFGQTTV------------PAEAQSGVDDVAGGI 189
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNT 673
+HSLA+ GK+ WG + Q + T
Sbjct: 190 FHSLALKD-GKVIAWGDNRYKQTTVPT 215
Score = 77.3 bits (191), Expect = 8e-16
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
V ++A G + L V AWG GQ +PA A V ++ G
Sbjct: 103 GVDAIAAGAWASYALKDGKVIAWGDDSDGQTT------------VPAEAQSGVTALDGGV 150
Query: 647 YHSLAITSQGKLYTWGWGVHGQLGLNT 673
Y +LA+ + G + WG GQ +
Sbjct: 151 YTALAVKN-GGVIAWGDNYFGQTTVPA 176
Score = 69.3 bits (170), Expect = 5e-13
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 30/100 (30%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDE 421
+ I G H + L + G+V WG N++GQL +
Sbjct: 26 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMPA------------------------- 59
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
S + I G SLA+ G+V AWG N GQ
Sbjct: 60 ---ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT 95
Score = 67.3 bits (165), Expect = 2e-12
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 30/100 (30%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDE 421
+ I G +HS+ L ++G V WG N DGQ +
Sbjct: 65 VDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPA------------------------- 98
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
S + I G S A+ GKV AWG + GQ
Sbjct: 99 ---EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT 134
Score = 66.2 bits (162), Expect = 5e-12
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 603 SSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWG 662
++ V AWG + +PA A V +I+ G +H LA+ GK+ WG
Sbjct: 1 ATSVVAWGGNNDWGEAT-----------VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWG 48
Query: 663 WGVHGQLGLNTVED 676
++GQL +
Sbjct: 49 ANLNGQLTMPAATQ 62
Score = 63.5 bits (155), Expect = 4e-11
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 30/100 (30%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDE 421
+ + G + ++ + G V WG N GQ +
Sbjct: 143 VTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA------------------------- 176
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
S + + G SLA+ GKV AWG N Q
Sbjct: 177 ---EAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTT 212
Score = 62.3 bits (152), Expect = 1e-10
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 587 DVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQ 646
VS++A G ++L L + V AWGSS+ + V SI AG
Sbjct: 220 GVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQS----------------GVSSIEAGP 263
Query: 647 YHSLAITSQG 656
+ A+
Sbjct: 264 NAAYALKGGS 273
Score = 61.2 bits (149), Expect = 2e-10
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 30/99 (30%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDE 421
+ + G HS+ L ++G+V WG N Q +
Sbjct: 182 VDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------------------ 216
Query: 422 RSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQV 460
S + I G +SLA+ +GKV AWG++
Sbjct: 217 ----ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPS 250
Score = 60.8 bits (148), Expect = 3e-10
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 30/104 (28%)
Query: 358 VKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEV 417
++ + I G S L ++G+V WG + DGQ +
Sbjct: 100 ARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPA--------------------- 137
Query: 418 SSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
S + + G +LA+ +G V AWG N GQ
Sbjct: 138 -------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT 173
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 28/81 (34%)
Query: 379 GRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGD 438
V WG N D P S + I G
Sbjct: 2 TSVVAWGGNNDWGEAT-------VPA--------------------EAQSGVDAIAGGYF 34
Query: 439 FSLAMDESGKVWAWGTNVQGQ 459
LA+ GKV WG N+ GQ
Sbjct: 35 HGLALK-GGKVLGWGANLNGQ 54
Score = 46.1 bits (110), Expect = 2e-05
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 362 ILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGS 396
+ I G +S+ L + G+V WG + S
Sbjct: 221 VSAIASGEWYSLAL-KNGKVIAWGSSRTAPSSVQS 254
Score = 44.6 bits (106), Expect = 5e-05
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 19/76 (25%)
Query: 36 LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRL 95
++ G ++ ++N +V WGSS VSS+ G
Sbjct: 224 IASGEWYSLALKNGKVIAWGSSRTAPSSVQSG-------------------VSSIEAGPN 264
Query: 96 HTLVLTSSGVYAWGSS 111
L
Sbjct: 265 AAYALKGGSGSGHHHH 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 6e-05
Identities = 87/574 (15%), Positives = 170/574 (29%), Gaps = 206/574 (35%)
Query: 134 ANIRVVSISAGQY-HSLAI-TSQGKLYTWGWGVHGQL------GLNTV--------EDMS 177
+ R +++S G H L + T+ + + QL L E +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTAS-------FFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 178 EPQLV-KALEH--EVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIEL 234
+LV K L + ++ +K G + L + F + G++ H + +L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQV-LNLC--LTEFENCYLE----GNDI-HALAAKL 108
Query: 235 YGLPEP----ISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVK 290
+ + Y A + R + S+ + R+ + A+++
Sbjct: 109 LQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKSNSALFRAVGE--GNAQLV------- 157
Query: 291 NAALAEFSSEVTSPDANNET------KIHLAPSPSSASEKNETAEYASFMQSFLSSADDG 344
A F + N + ++ +T Y + + + +
Sbjct: 158 ----AIFGGQ-----GNTDDYFEELRDLY------------QT--YHVLVGDLIKFSAET 194
Query: 345 MAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVHTPT 404
++ + T +D +V+T G N+ L N S TP
Sbjct: 195 LSELIRTTLDAE-----------------------KVFTQGLNILEWLENPSN----TPD 227
Query: 405 AISINIVMTSSEVSSDERSPLLS-SSIKH--ITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
+ S +S PL+ + H +T + G P
Sbjct: 228 ----KDYLLSIPIS----CPLIGVIQLAHYVVTA-------------------KLLGFTP 260
Query: 462 RYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVAS-YDCSLHIIP 520
G L ++ S+ + + + SW S + I
Sbjct: 261 ----------------GELRSYLKGATGHSQGLVTAVAIAETDSW---ESFFVSVRKAIT 301
Query: 521 VLSII----QNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVR 576
VL I + P+ S SI ++ P + L ++ +
Sbjct: 302 VLFFIGVRCYEAYPNTS---------LPPSILEDSLENNEGVPSPM------LSISNLTQ 346
Query: 577 SHHQMLIMRI--------DVS-SVACGRLHTLVLTSSGVYAWG--SSQYGQLGIGL---- 621
Q + + V S+ G + LV++ G S YG L + L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVS-------GPPQSLYG-LNLTLRKAK 397
Query: 622 ----IDQS--PHPRIIPALANIRVVSISAGQYHS 649
+DQS P +N R + +++ +HS
Sbjct: 398 APSGLDQSRIPFSERKLKFSN-RFLPVAS-PFHS 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.003
Identities = 49/378 (12%), Positives = 90/378 (23%), Gaps = 111/378 (29%)
Query: 273 QSQAQKRARMM--CYSNQVKNAALAEFSSEVTSPDAN-NETKIHLAP-SPSSASEKNETA 328
A + ++ + +F EV + + I PS T
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSM-----MTR 110
Query: 329 EYASFMQSFLSSADDGMAHMSPTLVDTSHV--KAPILQICCGCHHSML--LSREGRVYTW 384
Y + + +V P L++ L L V
Sbjct: 111 MYIEQRDRL---------YNDNQVFAKYNVSRLQPYLKL-----RQALLELRPAKNVL-- 154
Query: 385 GRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFS---- 440
+DG LG+G K + S + + I + S
Sbjct: 155 ---IDGVLGSG--KTW-----------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 441 LAMDES-----GKVWAWGTNVQGQVPRYIGELLFYKFNF--DPVGP---LVKWIPWFDD- 489
L M + W ++ + I + LV +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNV 253
Query: 490 -SSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQ 548
++K NA +L+ + + LS + S + + +L S+
Sbjct: 254 QNAKAWNAFNLSCK----ILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 549 GKNVNCE---------NLTP--CCLC----------W--WENTLCDK------------- 572
K ++C P + W W++ CDK
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 573 -DIVRSHHQML-IMRIDV 588
R L +
Sbjct: 368 PAEYRKMFDRLSVFPPSA 385
Score = 37.9 bits (87), Expect = 0.012
Identities = 45/325 (13%), Positives = 92/325 (28%), Gaps = 90/325 (27%)
Query: 416 EVSSDERSPLLSSSIKHITCGGDFSLAMDESGK---VWAWGTNVQGQVPRYIGELLFYKF 472
+V +S L I HI D SG W + + V +++ E+L +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKD-----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 473 NF----------DPVGPLVKWI----PWFDDSS----------KKINAIT---FQSSSAS 505
F P +I ++D+ + + + A
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 506 WLLVASYDCSLHIIP-------VLSIIQNSEPSQS---NVAWSLNDITTLSIQGKNVNCE 555
+L+ + L + + + + W L++ KN N
Sbjct: 152 NVLI-------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNL--KNCNSP 195
Query: 556 NLTPCCLCWWENTLC---DKDIVRSHHQMLIMRIDVSSVACGRLHTLVLTSSGVYAWGSS 612
L L D + +++ + S+ L L+ S
Sbjct: 196 ETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLK---------SK 241
Query: 613 QYGQ-LGIGLI-DQSPHPRIIPALANI--RVVSISAGQYHSLAITSQGKLYTWGWGVHGQ 668
Y L L+ + + A N+ +++ + ++ + T H
Sbjct: 242 PYENCL---LVLLNVQNAKAWNAF-NLSCKILLTT--RFKQVTDFLSAATTTHISLDHHS 295
Query: 669 LGLNTVEDMSEPQLVKALEHEISSL 693
+ L D + L+K L+ L
Sbjct: 296 MTLT--PDEVKSLLLKYLDCRPQDL 318
Score = 32.5 bits (73), Expect = 0.54
Identities = 51/367 (13%), Positives = 94/367 (25%), Gaps = 133/367 (36%)
Query: 2 HITYTPRLVN---YVFTQIPSEPEELSEPLVEIPEVPLSGGFYHVALVRNRRVHTWGSSS 58
HI + V+ +F + S+ EE+ + VE L N + + S
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE------------EVLRIN---YKFLMSP 97
Query: 59 YGALGNGPTMSQ---ISEPEPVVWFRNN----KIDVSSVACGRLHTLVLTSSGVYAWGSS 111
P+M I + + + + +N K +VS RL + + +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVS-----RLQPYLKLRQALLELRPA 150
Query: 112 Q----YGQLGIG---LIDQSPHPRIIPALANIRVVS--------ISAGQYHS--LAITSQ 154
+ G LG G + + +V ++ +S +
Sbjct: 151 KNVLIDGVLGSGKTWVALD--------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEV------IISAKGGHAHS-IALTKAG 207
KL Q+ N +K H + ++ +K + + + L
Sbjct: 203 QKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLN-- 252
Query: 208 RVW------AFG-----------SGIFGQLGTGSNTKHKVPIELYG-------------- 236
V AF + L + T H
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 237 -------LPE------P--ISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRAR 281
LP P +S+IA + L TW + V
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIA-------ES-IRDGLATWDNWKHV---NCDKLTTII 359
Query: 282 MMCYSNQ 288
+
Sbjct: 360 ESSLNVL 366
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 29.6 bits (67), Expect = 0.96
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 72 SEPEPVVWFRNNKI-----DVSSVACGRLHTLVLTS-----SGVY 106
S PV W N + S G + LV+ + SG Y
Sbjct: 34 SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
>3rco_A Tudor domain-containing protein 7; structural genomics, structural
genomics consortium, SGC, HL DNA binding protein; 1.80A
{Homo sapiens}
Length = 89
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 171 NTVEDMSEPQLVKALEHEVIISAKGG 196
+ M E LV + V+ S K G
Sbjct: 3 LYFQGMLEGDLVSKMLRAVLQSHKNG 28
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 28.4 bits (64), Expect = 2.6
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 73 EPEPVVWFRNNKI-----DVSSVACGRLHTLVLTS-----SGVY 106
PV W ++ K V G + LV+ +G Y
Sbjct: 35 AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEY 78
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 70 QISEPEPVVWFRNNKI-----DVSSVACGRLHTLVLTS-----SGVY 106
++S+ PV W + + S G L + +G Y
Sbjct: 31 ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEY 77
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 29.8 bits (68), Expect = 3.5
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 164 VHGQLGLNTV--EDMSEPQLVKALE---HEVIISAKGGHAHSIALTKAGRVWA 211
H Q + + E P +K LE +V + G SI + G ++
Sbjct: 490 FHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYG 542
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 178 EPQLVKALEHEVIISAKGGHAHSIALTKA 206
E Q +K L+ + + A A ++A+ KA
Sbjct: 18 EKQALKKLQASLKLYADDS-APALAI-KA 44
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B
2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Length = 190
Score = 29.1 bits (66), Expect = 3.9
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 164 VHGQLGLNTV--EDMSEPQLVKALE---HEVIISAKGGHAHSIALTKAGRVWAFG 213
H Q + + E P +K LE +V + G SI + G ++
Sbjct: 124 FHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGAS 178
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 27.3 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 70 QISEPEPVVWFRNNKI-----DVSSVACGRLHTLVLTS-----SGVY 106
+ISE P W +N + V GR+H LV+ + G Y
Sbjct: 30 EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 29.1 bits (64), Expect = 5.8
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 31/132 (23%)
Query: 486 WFDDSSKKINAITFQSSSASWLLVA--SYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDIT 543
+ I +++ S +V+ + D +I ++ DI
Sbjct: 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI------------------FNPKDIA 344
Query: 544 TLSIQGKNVNCENLTPCCLCWWENTL---CDKDIVR--------SHHQMLIMRIDVSSVA 592
T NL P C + +R + H ++ ++++
Sbjct: 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG 404
Query: 593 CGRLHTLVLTSS 604
RLH +VL S
Sbjct: 405 VSRLHPMVLAGS 416
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 27.4 bits (61), Expect = 5.9
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 70 QISEPEP-VVWFRNNKI-----DVSSVACGRLHTLVLTS-----SGVY 106
++S + W+++ + + GR H L+L SG +
Sbjct: 33 ELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 28.8 bits (64), Expect = 6.1
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 363 LQICCGCH------HSMLLSREGRVYTWGRNVDGQLGNGSRKE 399
L C GC ++ R G + NV G G ++
Sbjct: 25 LNKCLGCQTCTVACKNIWTKRPGTEHMRWNNVTTYPGKGYPRD 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.405
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,304,203
Number of extensions: 602826
Number of successful extensions: 1501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 155
Length of query: 694
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 594
Effective length of database: 3,909,693
Effective search space: 2322357642
Effective search space used: 2322357642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)