RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14091
(694 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 128 bits (322), Expect = 9e-33
Identities = 74/425 (17%), Positives = 144/425 (33%), Gaps = 53/425 (12%)
Query: 43 VALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTS 102
V T G G LG G + + +P V + V G +HT+ L+
Sbjct: 9 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED----VVQAEAGGMHTVCLSK 64
Query: 103 SG-VYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWG 161
SG VY++G + G LG + +VV +SAG H+ A+T G+++ WG
Sbjct: 65 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124
Query: 162 WGVHGQLGLNTVEDMSEPQLVKALEHEV-IISAKGGHAHSIALTKAGRVWAFGSGIFGQL 220
+ +E M + + ++ +V ++ G+ H + LT G ++ G G GQL
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184
Query: 221 GTG----SNTKHKVPIELYGLPEP-------------ISMIATGYFHNLALGTSNRLYTW 263
G +N + +E +P+ G + A+ +Y +
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244
Query: 264 GSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASE 323
G S + ++ + + +
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKN------STKSWVGFSGGQHHTVCMDSE------ 292
Query: 324 KNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYT 383
+ L + PTL+ + + CG ++++GRV+
Sbjct: 293 -GKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP---AVSSVACGASVGYAVTKDGRVFA 348
Query: 384 WGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAM 443
WG + QLG G ++ +P + L + + ++ GG ++ +
Sbjct: 349 WGMGTNYQLGTGQDEDAWSPVEMMG--------------KQLENRVVLSVSSGGQHTVLL 394
Query: 444 DESGK 448
+ +
Sbjct: 395 VKDKE 399
Score = 109 bits (273), Expect = 2e-26
Identities = 66/349 (18%), Positives = 119/349 (34%), Gaps = 14/349 (4%)
Query: 342 DDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGSRKEVH 401
++ M P LV ++Q G H++ LS+ G+VY++G N +G LG + E
Sbjct: 32 ENVMERKKPALVSIP---EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS 88
Query: 402 TPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVP 461
+ + +VS+ + + + G F D +G + + VP
Sbjct: 89 EMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSF---RDNNGVIGLLEPMKKSMVP 145
Query: 462 RYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKINAI----TFQSSSASWLLVASYDCSLH 517
+ + LV D + A+ + L
Sbjct: 146 VQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV 205
Query: 518 IIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRS 577
V+ + S T +I + I ++
Sbjct: 206 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQN 265
Query: 578 HHQMLIMRIDVSSVACGRLHTLVLTSSG-VYAWGSSQYGQLGIGLI-DQSPHPRIIPALA 635
+ G+ HT+ + S G Y+ G ++YG+LG+G ++ P +I L
Sbjct: 266 LTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP 325
Query: 636 NIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVEDMSEPQLVK 684
V S++ G A+T G+++ WG G + QLG ED P +
Sbjct: 326 A--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 372
Score = 104 bits (258), Expect = 2e-24
Identities = 69/355 (19%), Positives = 113/355 (31%), Gaps = 41/355 (11%)
Query: 144 GQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALEHEVIISAKGGHAHSIA 202
H T G + T G G GQLGL V + +P LV E V A G H++
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA--GGMHTVC 61
Query: 203 LTKAGRVWAFGSGIFGQLGTGS-NTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLY 261
L+K+G+V++FG G LG + ++ L E + ++ G H AL R++
Sbjct: 62 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 121
Query: 262 TWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSA 321
WGS + + M + + + +S
Sbjct: 122 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181
Query: 322 SEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRV 381
+ E + + S CG + + +S EG V
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV 241
Query: 382 YTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVS----------------------- 418
Y +G + QLG + P ++ T S V
Sbjct: 242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA 301
Query: 419 -----------SDERSPLL---SSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQ 459
++ P L ++ + CG A+ + G+V+AWG Q
Sbjct: 302 EYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 356
Score = 101 bits (250), Expect = 2e-23
Identities = 66/418 (15%), Positives = 132/418 (31%), Gaps = 31/418 (7%)
Query: 196 GHAHSIALTKAGRVWAFGSGIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALG 255
+H T+ G V G G GQLG G N + L +PE + G H + L
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLS 63
Query: 256 TSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLA 315
S ++Y++G + + + + + + M+ ++
Sbjct: 64 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV----------------ELQEKVVQVSAG 107
Query: 316 PSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLL 375
S ++A + + + + P++++ G H ++L
Sbjct: 108 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 167
Query: 376 SREGRVYTWGRNVDGQLGNGSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITC 435
+ +G +YT G GQLG + + ++ V R + C
Sbjct: 168 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 227
Query: 436 GGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKFNFDPVGPLVKWIPWFDDSSKKIN 495
G F+ A+ G V+ +G + Q+ E F N K F
Sbjct: 228 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 287
Query: 496 AITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSLNDITTLSIQGKNVNCE 555
+ + + S + + S P+ + L +++++
Sbjct: 288 CMDSEGKAYSL----GRAEYGRLGLGEGAEEKSIPTLIS---RLPAVSSVACGASVGYAV 340
Query: 556 NLTPCCLCWWENT-----LCDKDIVRSHHQMLIMRID---VSSVACGRLHTLVLTSSG 605
W T + S +M+ +++ V SV+ G HT++L
Sbjct: 341 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 398
Score = 94.1 bits (232), Expect = 4e-21
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
G ++ A+ V+ +G S+Y LG T S + + K V
Sbjct: 227 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 286
Query: 97 TLVLTSSGVYAWGSSQYGQLGIGLI-DQSPHPRIIPALANIRVVSISAGQYHSLAITSQG 155
+ + Y+ G ++YG+LG+G ++ P +I L V S++ G A+T G
Sbjct: 287 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDG 344
Query: 156 KLYTWGWGVHGQLGLNTVEDMSEPQLV--KALEHEVIISAKGGHAHSIALTKAG 207
+++ WG G + QLG ED P + K LE+ V++S G H++ L K
Sbjct: 345 RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 398
Score = 83.7 bits (205), Expect = 8e-18
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 597 HTLVLTSSG-VYAWGSSQYGQLGIG-LIDQSPHPRIIPALANIRVVSISAGQYHSLAITS 654
H T G V G GQLG+G + + P ++ + VV AG H++ ++
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 64
Query: 655 QGKLYTWGWGVHGQLGLNTVED 676
G++Y++G G LG +T +
Sbjct: 65 SGQVYSFGCNDEGALGRDTSVE 86
Score = 54.8 bits (130), Expect = 2e-08
Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 17/208 (8%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
+GG + V L ++ +V+++G + GALG ++ V + + VS+
Sbjct: 54 AGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAA 113
Query: 97 TLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGK 156
++ G +G+ + ++ VV +++G H + +T+ G
Sbjct: 114 LTDDGRVFLWGSFRDNNGVIGLL-EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 172
Query: 157 LYTWGWGVHGQLGLNTVEDMSEPQLV----------------KALEHEVIISAKGGHAHS 200
LYT G G GQLG + + H A G +
Sbjct: 173 LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 232
Query: 201 IALTKAGRVWAFGSGIFGQLGTGSNTKH 228
A++ G V+ FG + QLGT
Sbjct: 233 FAISHEGHVYGFGLSNYHQLGTPGTESC 260
Score = 47.5 bits (111), Expect = 3e-06
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 645 GQYHSLAITSQGKLYTWGWGVHGQLGL-NTVEDMSEPQLVKALEH 688
H T G + T G G GQLGL V + +P LV E
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED 48
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 85.6 bits (210), Expect = 5e-19
Identities = 46/270 (17%), Positives = 82/270 (30%), Gaps = 23/270 (8%)
Query: 423 SPLLSSSIKHITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGELLFYKF---NFDPVGP 479
S + I G LA+ GKV WG N+ GQ+
Sbjct: 21 PAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA 79
Query: 480 LVKWIPWFDDSSKKINAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQSNVAWSL 539
L ++ + + +A+ + + + +I + S
Sbjct: 80 LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTV-- 137
Query: 540 NDITTLSIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIMRIDVSSVACGRLHTL 599
++ T + + + V VA G H+L
Sbjct: 138 --PAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL 195
Query: 600 VLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLY 659
L V AWG ++Y Q + P A V +I++G+++SLA+ + GK+
Sbjct: 196 ALKDGKVIAWGDNRYKQTTV------------PTEALSGVSAIASGEWYSLALKN-GKVI 242
Query: 660 TWGWGVHGQLGL--NTVEDMSEPQLVKALE 687
WG + + P AL+
Sbjct: 243 AWGSSRTAPSSVQSGVSSIEAGPNAAYALK 272
Score = 65.2 bits (157), Expect = 4e-12
Identities = 49/297 (16%), Positives = 82/297 (27%), Gaps = 41/297 (13%)
Query: 100 LTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYT 159
+ ++ V AWG + +PA A V +I+ G +H LA+ GK+
Sbjct: 1 VAATSVVAWGGNNDWG-----------EATVPAEAQSGVDAIAGGYFHGLALKG-GKVLG 48
Query: 160 WGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQ 219
WG ++GQL + + AG +
Sbjct: 49 WGANLNGQLTMPAATQSGVDAI-----------------------AAGNYHSLALKDGEV 85
Query: 220 LGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKR 279
+ G N + + + IA G + + AL + S ++AQ
Sbjct: 86 IAWGGNEDGQTTVPAEA-RSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSG 144
Query: 280 ARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLS 339
+ A T A S A ++
Sbjct: 145 VTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIA 204
Query: 340 SADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGNGS 396
D+ + S V I G +S+ L G+V WG + S
Sbjct: 205 WGDNRYKQTTVPTEALSGVS----AIASGEWYSLALK-NGKVIAWGSSRTAPSSVQS 256
Score = 59.4 bits (142), Expect = 3e-10
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGS 110
+ ++ G + + V VA G H+L L V AWG
Sbjct: 148 LDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGD 207
Query: 111 SQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQLGL 170
++Y Q + P A V +I++G+++SLA+ + GK+ WG +
Sbjct: 208 NRYKQTTV------------PTEALSGVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSV 254
Query: 171 --NTVEDMSEPQLVKALE 186
+ P AL+
Sbjct: 255 QSGVSSIEAGPNAAYALK 272
Score = 58.6 bits (140), Expect = 5e-10
Identities = 52/307 (16%), Positives = 89/307 (28%), Gaps = 57/307 (18%)
Query: 155 GKLYTWGWGVHGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGS 214
+ WG E S + + GG+ H +AL G+V +G+
Sbjct: 4 TSVVAWGGNNDWGEATVPAEAQSG-----------VDAIAGGYFHGLALK-GGKVLGWGA 51
Query: 215 GIFGQLGTGSNTKHKVPIELYGLPEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQS 274
+ GQL + T+ + IA G +H+LAL + G+ +
Sbjct: 52 NLNGQLTMPAATQS-----------GVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPA 100
Query: 275 QAQKRARMMCYSNQVKNAALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFM 334
+A+ + A T A S +A + A
Sbjct: 101 EARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKN 160
Query: 335 QSFLSSADDGMAHMSPTLVDTSHVKAPILQICCGCHHSMLLSREGRVYTWGRNVDGQLGN 394
++ D+ + + G L ++G+V WG N Q
Sbjct: 161 GGVIAWGDNYFGQTTVP-----AEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTV 215
Query: 395 GSRKEVHTPTAISINIVMTSSEVSSDERSPLLSSSIKHITCGGDFSLAMDESGKVWAWGT 454
+ S + I G +SLA+ +GKV AWG+
Sbjct: 216 PTE----------------------------ALSGVSAIASGEWYSLALK-NGKVIAWGS 246
Query: 455 NVQGQVP 461
+
Sbjct: 247 SRTAPSS 253
Score = 52.8 bits (125), Expect = 4e-08
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 31/115 (26%)
Query: 37 SGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLH 96
+GG +H +++ +V WG + Y VS++A G +
Sbjct: 188 AGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS---------------GVSAIASGEWY 232
Query: 97 TLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAI 151
+L L + V AWGSS+ + V SI AG + A+
Sbjct: 233 SLALKNGKVIAWGSSRTAPSSVQ----------------SGVSSIEAGPNAAYAL 271
Score = 51.7 bits (122), Expect = 1e-07
Identities = 52/258 (20%), Positives = 84/258 (32%), Gaps = 58/258 (22%)
Query: 51 VHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYAWGS 110
V WG ++ G ++ V ++A G H L L V WG+
Sbjct: 6 VVAWGGNNDW--GEATVPAEAQS------------GVDAIAGGYFHGLALKGGKVLGWGA 51
Query: 111 SQYGQLGIGLIDQSPHPRII----PALANIRVVSISAGQYHSLAITSQGKLYTWGWGV-- 164
+ GQL + QS I +LA I+ G T + + +
Sbjct: 52 NLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAA 111
Query: 165 -------HGQLGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIF 217
+ D S+ Q E + ++A G ++ K G V A+G F
Sbjct: 112 GAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYF 171
Query: 218 GQLGT-----------------------------GSNTKHKVPIELYGLPEPISMIATGY 248
GQ G N + + L +S IA+G
Sbjct: 172 GQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS-GVSAIASGE 230
Query: 249 FHNLALGTSNRLYTWGSS 266
+++LAL + ++ WGSS
Sbjct: 231 WYSLAL-KNGKVIAWGSS 247
Score = 49.4 bits (116), Expect = 5e-07
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 601 LTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYT 660
+ ++ V AWG + +PA A V +I+ G +H LA+ GK+
Sbjct: 1 VAATSVVAWGGNNDWG-----------EATVPAEAQSGVDAIAGGYFHGLALKG-GKVLG 48
Query: 661 WGWGVHGQL 669
WG ++GQL
Sbjct: 49 WGANLNGQL 57
Score = 47.1 bits (110), Expect = 3e-06
Identities = 38/207 (18%), Positives = 59/207 (28%), Gaps = 41/207 (19%)
Query: 48 NRRVHTWGSSSYGALGNGPTMSQISEPEPVVWFRNNKIDVSSVACGRLHTLVLTSSGVYA 107
+ +SY + V+++ G L + + GV A
Sbjct: 106 VDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIA 165
Query: 108 WGSSQYGQLGIGLIDQSPHPRIIPALANIRVVSISAGQYHSLAITSQGKLYTWGWGVHGQ 167
WG + +GQ + QS AG GK+ WG + Q
Sbjct: 166 WGDNYFGQTTVPAEAQSGVD-------------DVAGGIFHSLALKDGKVIAWGDNRYKQ 212
Query: 168 LGLNTVEDMSEPQLVKALEHEVIISAKGGHAHSIALTKAGRVWAFGSGIFGQLGTGSNTK 227
+ +AL I++ G +S+AL G+V A+GS S
Sbjct: 213 TTVP----------TEALSGVSAIAS--GEWYSLALKN-GKVIAWGSSRTAPSSVQSGVS 259
Query: 228 HKVPIELYGLPEPISMIATGYFHNLAL 254
I G AL
Sbjct: 260 S---------------IEAGPNAAYAL 271
Score = 34.0 bits (76), Expect = 0.043
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 36 LSGGFYHVALVRNRRVHTWGSSSYGALGNGPTMSQIS 72
++ G ++ ++N +V WGSS +S I
Sbjct: 226 IASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIE 262
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
Gamma-glutamyltranspeptidase, GGT {Escherichia coli
[TaxId: 562]}
Length = 541
Score = 30.5 bits (68), Expect = 0.70
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 164 VHGQLGLNTV--EDMSEPQLVKALE---HEVIISAKGGHAHSIALTKAGRVWA 211
H Q + + E P +K LE +V + G SI + G ++
Sbjct: 475 FHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYG 527
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 28.7 bits (64), Expect = 2.1
Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 3/151 (1%)
Query: 233 ELYGL-PEPISMIATGYFHNLALGTSNRLYTWGSSPQVLRSQSQAQKRARMMCYSNQVKN 291
++YG+ PE +SM+ L L Y + + + +SQ Q + + Q +
Sbjct: 32 DVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTIS 91
Query: 292 AALAEFSSEVTSPDANNETKIHLAPSPSSASEKNETAEYASFMQSFLSSADDGMAHMSPT 351
A + ANN+ K+H + E+ + ++ D + T
Sbjct: 92 NACGTIG--LIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHET 149
Query: 352 LVDTSHVKAPILQICCGCHHSMLLSREGRVY 382
+AP + H L+ +G +Y
Sbjct: 150 SAHEGQTEAPSIDEKVDLHFIALVHVDGHLY 180
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 27.9 bits (60), Expect = 4.2
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 494 INAITFQSSSASWLLVASYDCSLHIIPVLSIIQNSEPSQS--------NVAWSLNDITTL 545
I+ I S S LL+ S+D SL + +N + QS + N +
Sbjct: 14 ISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 546 SIQGKNVNCENLTPCCLCWWENTLCDKDIVRSHHQMLIM 584
+ + ++ ++ +
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 27.0 bits (60), Expect = 4.5
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 79 WFRNNKIDVSSVACGRLHTLVLTSSGVYAWGSSQYGQLGIGLIDQSPHPRIIPALANIRV 138
WF N + V + G + TL V+ G G + P A + ++
Sbjct: 2 WFFNKNLKVLAPCDGTIITLDEVEDEVFK--ERMLGD-GFAIN---PKSNDFHAPVSGKL 55
Query: 139 VSISAGQYHSLAITSQGKLYTWGWGVHGQLGLNTVE 174
V+ + H+ I ++ + +H +GL+TV
Sbjct: 56 VTAFPTK-HAFGIQTKSGVEIL---LH--IGLDTVS 85
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 112
Score = 26.5 bits (58), Expect = 5.1
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 19/108 (17%)
Query: 410 IVMTSSEVSSDERSPLLSSSIKH---ITCGGDFSLAMDESGKVWAWGTNVQGQVPRYIGE 466
+VMT S + +S +I I+C L W + + P +
Sbjct: 2 VVMTQSPKT-------ISVTIGQPASISCKSSQRLLNSNGKTFLNW---LLQR-PGQSPK 50
Query: 467 LLFYKFNFDPVGPLVKWIPWFDDSSKKINAITFQSSSASWLLVASYDC 514
L Y G +P S T + S + Y C
Sbjct: 51 RLIYLGTKLDSG-----VPDRFTGSGSGTDFTLKISRVEAEDLGVYYC 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.405
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,511,800
Number of extensions: 112199
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 27
Length of query: 694
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 602
Effective length of database: 1,144,436
Effective search space: 688950472
Effective search space used: 688950472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)