BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14093
(857 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I47|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|C Chain C, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|D Chain D, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|3G42|A Chain A, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|B Chain B, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|C Chain C, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|D Chain D, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
Length = 288
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 143/249 (57%), Gaps = 31/249 (12%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 41 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 96
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 97 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 156
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 157 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 199
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSF 418
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS + + + F
Sbjct: 200 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTIESKAQECF 259
Query: 419 WSRGSSILG 427
R + + G
Sbjct: 260 QERSNKVCG 268
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 77/149 (51%), Gaps = 18/149 (12%)
Query: 81 KRQVDPAYEYKPTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWH 140
KR+ DP P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W
Sbjct: 2 KRRADP----DPMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW- 56
Query: 141 DRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLID 193
+ G++G G I++I + V+ GE HYNM +D WDV+ LLE D
Sbjct: 57 ---DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFD 113
Query: 194 RVHKIYNDTIWHDRSEQD---GYRGMGFV 219
+ + H + QD G G+ +V
Sbjct: 114 IAEEASKVCLAHLFTYQDFDMGTLGLAYV 142
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 75/237 (31%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 57 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 116
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG--------------------- 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 117 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGGVCPKAYYSPVGKKNIYLNSGL 173
Query: 642 ------------------SIHENLKYFDTLHS---------------SHISHTIVKRGVQ 668
+ HE F H ++ + I G
Sbjct: 174 TSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDH 233
Query: 669 ESNHPFNKIKEVTFKTLGNLRSIRKVLEAKSGKCFSEPEESFCGNLRVEGDEECDAG 725
E+N F++ + +SI K +E+K+ +CF E CGN RV+ EECD G
Sbjct: 234 ENNKMFSQCSK---------QSIYKTIESKAQECFQERSNKVCGNSRVDEGEECDPG 281
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 111 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 152
>pdb|2A8H|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Thiomorpholine Sulfonamide Hydroxamate Inhibitor
pdb|2A8H|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Thiomorpholine Sulfonamide Hydroxamate Inhibitor
Length = 271
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 38 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 93
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 94 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 153
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 154 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 196
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 197 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 237
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 6 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 61
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 62 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 121
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 122 HLFTYQDFDMGTLGLAYV 139
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 54 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 113
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 114 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 149
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 108 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 149
>pdb|2OI0|A Chain A, Crystal Structure Analysis 0f The Tnf-A Coverting Enzyme
(Tace) In Complexed With Aryl-Sulfonamide
Length = 266
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 37 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 92
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 93 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 152
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 153 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 195
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 196 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 236
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 5 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 60
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 61 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 120
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 121 HLFTYQDFDMGTLGLAYV 138
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 53 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 112
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 113 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 148
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 107 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 148
>pdb|1BKC|I Chain I, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
Length = 256
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 34 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 89
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 90 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 149
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 150 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 192
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 193 FGAEHDPDGLAECAPNEEQGGKYVMYPIAVSGDHENNKMFS 233
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 2 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 57
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 58 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 117
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 118 HLFTYQDFDMGTLGLAYV 135
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 50 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 109
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 110 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 104 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
>pdb|3B92|A Chain A, Novel Thio-Based Tace Inhibitors Part 2: Rational Design,
Synthesis And Sar Of Thiol-Contaning Aryl Sufones
Length = 259
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 37 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 92
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 93 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 152
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 153 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 195
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 196 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 236
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 5 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 60
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 61 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 120
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 121 HLFTYQDFDMGTLGLAYV 138
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 53 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 112
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 113 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 148
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 107 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 148
>pdb|1ZXC|A Chain A, Crystal Structure Of Catalytic Domain Of Tnf-alpha
Converting Enzyme (tace) With Inhibitor
pdb|1ZXC|B Chain B, Crystal Structure Of Catalytic Domain Of Tnf-alpha
Converting Enzyme (tace) With Inhibitor
Length = 263
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 38 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 93
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 94 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 153
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 154 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 196
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 197 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 237
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 6 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 61
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 62 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 121
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 122 HLFTYQDFDMGTLGLAYV 139
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 54 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 113
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 114 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 149
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 108 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 149
>pdb|1BKC|A Chain A, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
pdb|1BKC|C Chain C, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
pdb|3CKI|A Chain A, Crystal Structure Of The Tace-N-Timp-3 Complex
Length = 256
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 34 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 89
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 90 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 149
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 150 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 192
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 193 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 233
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 2 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 57
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 58 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 117
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 118 HLFTYQDFDMGTLGLAYV 135
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 50 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 109
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 110 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 104 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
>pdb|1BKC|E Chain E, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
Length = 256
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 34 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 89
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 90 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 149
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 150 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 192
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 193 FGAEHDPDGKAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 233
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 2 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 57
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 58 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 117
Query: 205 HDRSEQD---GYRGMGFV 219
H + QD G G+ +V
Sbjct: 118 HLFTYQDFDMGTLGLAYV 135
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 50 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 109
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 110 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 104 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 145
>pdb|3KMC|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Tartrate-Based Inhibitor
pdb|3KMC|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Tartrate-Based Inhibitor
pdb|3KME|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With Phenyl-
Pyrrolidinyl-Tartrate Inhibitor
pdb|3KME|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With Phenyl-
Pyrrolidinyl-Tartrate Inhibitor
pdb|3L0T|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydantoin Inhibitor
pdb|3L0T|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydantoin Inhibitor
pdb|3L0V|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With The
First Inhibitor Occupying The S1' Pocket
pdb|3L0V|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With The
First Inhibitor Occupying The S1' Pocket
pdb|3LGP|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Benzimidazolyl- Thienyl-Tartrate Based Inhibitor
pdb|3LGP|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Benzimidazolyl- Thienyl-Tartrate Based Inhibitor
pdb|3LE9|A Chain A, Crystal Structure Of The Catalytic Domain Of Tace With
Indazolinone- Phenyl-Hydantoin Inhibitor
pdb|3LE9|B Chain B, Crystal Structure Of The Catalytic Domain Of Tace With
Indazolinone- Phenyl-Hydantoin Inhibitor
pdb|3LEA|A Chain A, Crystal Structure Of The Catalytic Domain Of Tace With
Isoindolinone- Biphenyl-Hydantoin Inhibitor
pdb|3LEA|B Chain B, Crystal Structure Of The Catalytic Domain Of Tace With
Isoindolinone- Biphenyl-Hydantoin Inhibitor
pdb|3O64|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
2-(2-Aminothiazol- 4-Yl)pyrrolidine-Based Tartrate
Diamides
pdb|3O64|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
2-(2-Aminothiazol- 4-Yl)pyrrolidine-Based Tartrate
Diamides
Length = 270
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 38 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 93
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAY GSPR NS GG+C
Sbjct: 94 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPK 153
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 154 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 196
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 197 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 237
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 54 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 113
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 114 EASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 149
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 108 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 149
>pdb|2FV5|A Chain A, Crystal Structure Of Tace In Complex With Ik682
pdb|2FV5|B Chain B, Crystal Structure Of Tace In Complex With Ik682
Length = 261
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 37 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 92
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAY GSPR NS GG+C
Sbjct: 93 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPK 152
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 153 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 195
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 196 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 236
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 53 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 112
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 113 EASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 148
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 107 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 148
>pdb|3EDZ|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3EDZ|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3E8R|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3E8R|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3EWJ|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Carboxylate Inhibitor
pdb|3EWJ|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Carboxylate Inhibitor
Length = 271
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 38 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 93
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAY GSPR NS GG+C
Sbjct: 94 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPK 153
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 154 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 196
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 197 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 237
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 54 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 113
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 114 EASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 149
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 108 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 149
>pdb|2FV9|A Chain A, Crystal Stucture Of Tace In Complex With Jmv 390-1
pdb|2FV9|B Chain B, Crystal Stucture Of Tace In Complex With Jmv 390-1
Length = 258
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 35 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 90
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAY GSPR NS GG+C
Sbjct: 91 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPK 150
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 151 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 193
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 194 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 234
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 51 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 110
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 111 EASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 146
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 105 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 146
>pdb|2DDF|A Chain A, Crystal Structure Of Tace In Complex With Tapi-2
pdb|2DDF|B Chain B, Crystal Structure Of Tace In Complex With Tapi-2
Length = 257
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 31/221 (14%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIR----- 243
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 35 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 90
Query: 244 --DKWDVRNLLEVFSREYSHK--DFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
D WDV+ LLE FS + + + CLAHLFT F+ G LGLAY GSPR NS GG+C
Sbjct: 91 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPK 150
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ S KN +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 151 AYY-------------SPVGKKN---IYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 193
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 194 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFS 234
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI-------RDKWDVRNLLETFSSHV-- 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS +
Sbjct: 51 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 110
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 111 EASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 146
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 397 TFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 105 SFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYGGSPRANSHGG 146
>pdb|2ZKR|2 Chain 2, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 97
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 61/73 (83%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGT 839
TKGTSSFGKRRNKTHTLCRRCG +YH+QK C +CGYP R R YNWS KA+RR TTGT
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 840 GRMRHLKIVRRRF 852
GRMRHLKIV RRF
Sbjct: 62 GRMRHLKIVYRRF 74
>pdb|3IZR|LL Chain l, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 94
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 781 KGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGTG 840
KGT SFGKRRNKTHTLC RCG+ S+H+QK C+ CGYP R+R YNWSVKA RRKTTGTG
Sbjct: 3 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62
Query: 841 RMRHLKIVRRRF 852
RMR+++ V RRF
Sbjct: 63 RMRYMRHVPRRF 74
>pdb|3IZS|LL Chain l, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|DD Chain d, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|DD Chain d, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|JJ Chain j, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|JJ Chain j, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|JJ Chain j, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 88
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 781 KGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGTG 840
KGT SFGKR NK+HTLC RCG+ S+H+QKK C+ CGYP + R YNW KA+RR TTGTG
Sbjct: 3 KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTG 62
Query: 841 RMRHLKIVRRRF 852
RMR+LK V RRF
Sbjct: 63 RMRYLKHVSRRF 74
>pdb|1S1I|Y Chain Y, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 87
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 781 KGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGTG 840
KGT SFGKR NK+HTLC RCG+ S+H+QKK C+ CGYP + R YNW KA+RR TTGTG
Sbjct: 2 KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTG 61
Query: 841 RMRHLKIVRRRF 852
RMR+LK V RRF
Sbjct: 62 RMRYLKHVSRRF 73
>pdb|4A18|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 94
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYN-WSVKAQRRKTTG 838
T+GT +FGKR KTHTLCRRCGK++YH QK +CA CGYP ++R Y+ W K + RK G
Sbjct: 2 TRGTPAFGKRHQKTHTLCRRCGKATYHKQKLRCAACGYPDAKMRRYDGWGQKVRDRKGQG 61
Query: 839 TGRMRHLKIVRRR 851
TGRMR++K + RR
Sbjct: 62 TGRMRYMKTIARR 74
>pdb|3ZF7|NN Chain n, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 84
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 57/73 (78%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGT 839
TKGT+S G+R +TH LCRRCG+++YH+Q ++CA C YP + R YNWSVKA +R+ TGT
Sbjct: 2 TKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAIKRRRTGT 61
Query: 840 GRMRHLKIVRRRF 852
GR R+LK+V RR
Sbjct: 62 GRCRYLKVVHRRI 74
>pdb|3JYW|Y Chain Y, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 52
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 781 KGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKA 831
KGT SFGKR NK+HTLC RCG+ S+H+QKK C+ CGYP + R YNW KA
Sbjct: 2 KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKA 52
>pdb|1S72|1 Chain 1, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|1 Chain 1, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|1 Chain 1, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|1 Chain 1, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|1 Chain 1, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|1 Chain 1, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|1 Chain 1, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|1 Chain 1, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|1 Chain 1, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|1 Chain 1, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|1 Chain 1, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|1 Chain 1, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|1 Chain 1, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|1 Chain 1, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|1 Chain 1, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|1 Chain 1, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|1 Chain 1, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|1 Chain 1, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|1 Chain 1, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|1 Chain 1, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|1 Chain 1, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|1 Chain 1, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|1 Chain 1, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|1 Chain 1, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|1 Chain 1, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|1 Chain 1, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|1 Chain 1, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|Z Chain Z, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|1 Chain 1, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|1 Chain 1, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|1 Chain 1, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|1 Chain 1, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|1 Chain 1, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|1 Chain 1, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 57
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 782 GTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGY-PCPRLRHYNWSVKA 831
GT S GK+ THT CRRCG+ SYH +KK C+ CG+ + R Y W KA
Sbjct: 5 GTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 55
>pdb|1FFK|X Chain X, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|Z Chain Z, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|Z Chain Z, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|2 Chain 2, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|2 Chain 2, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|2 Chain 2, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|2 Chain 2, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|2 Chain 2, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|2 Chain 2, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|2 Chain 2, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|2 Chain 2, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|2 Chain 2, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|2 Chain 2, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|2 Chain 2, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|2 Chain 2, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|2 Chain 2, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|Z Chain Z, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|Z Chain Z, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|Z Chain Z, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|Z Chain Z, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3G4S|1 Chain 1, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|1 Chain 1, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|1 Chain 1, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|Z Chain Z, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 56
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 782 GTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGY-PCPRLRHYNWSVKA 831
GT S GK+ THT CRRCG+ SYH +KK C+ CG+ + R Y W KA
Sbjct: 4 GTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 54
>pdb|3J21|EE Chain e, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 62
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 782 GTSSFGKRRNK-THTLCRRCGKSSYHIQKKKCAQCGYP-CPRLRHYNWS 828
GT++FGKR + TH CRRCG+ SY+++K CA CG+ RLR Y WS
Sbjct: 4 GTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWS 52
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 107/320 (33%), Gaps = 87/320 (27%)
Query: 237 AHYNMIRDKWDVRNLLEVFSREYSHKDFCL------AHLFTDLKFEGGILGLAYVGSPRR 290
++ N I + DVR L +F E+ K A L T + F G +GLAY+GS
Sbjct: 68 SNINEINVQSDVRATLNLFG-EWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAYIGS--- 123
Query: 291 NSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADL 350
IC P+ S Y SSR TR +
Sbjct: 124 -----ICNPK----------TSAAVVQDY--------------SSR--------TRMVAI 146
Query: 351 VTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLA 410
AHE GHN G HD C G++ + F
Sbjct: 147 TMAHEMGHNLGMNHDRGFCTC------------------GFNKCVMSTRRTKPAYQFSSC 188
Query: 411 HLFTHQSFWSRGSSILGLAYIASPRPYS---IGGGILGLAYV--------GSPRR-NSKC 458
+ HQ + R L +P S + I G +V GSP S C
Sbjct: 189 SVREHQRYLLRDRPQCILN-----KPLSTDIVSPPICGNYFVEVGEECDCGSPADCQSAC 243
Query: 459 CYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSA 518
C + S++ CC+ CKF +CR A+ C+ CTG S+ CP
Sbjct: 244 CNATTCKLQHEAQCDSEE---CCEKCKFKGARAECRAAK-DDCDLPELCTGQSAECPTDV 299
Query: 519 PMSDNTGCL-ERGKCRGGKC 537
+ C +G C GKC
Sbjct: 300 FQRNGLPCQNNQGYCYNGKC 319
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 710 FCGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEEC 753
CGN VE EECD G + C CKL+ EEC
Sbjct: 219 ICGNYFVEVGEECDCGSPADCQSACCNATTCKLQHEAQCDSEEC 262
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom.
pdb|3DSL|A Chain A, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom
Length = 419
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 70/214 (32%), Gaps = 65/214 (30%)
Query: 350 LVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCL 409
++ AHE GHN G HD D C G Y + G ++N+
Sbjct: 139 VIMAHEMGHNLGIHHDTDFCSC-------GDYP----CIMGPTISNEP------------ 175
Query: 410 AHLFTHQSFWSRGSSILGLAYIASPRPYSIGGGILGLAYVGSPRRNSKCCYHSILSELFP 469
F+S S I +I P I LG V P + EL
Sbjct: 176 ------SKFFSNCSYIQCWDFIMKENPQCILNEPLGTDIVSPPVCGN---------ELLE 220
Query: 470 VLLYSDKNSP-------------------------CCQNCKFMAVGMKCRDAQYATCEQE 504
V D +P CC+ CKF G +CR A + C+
Sbjct: 221 VGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTECR-ASMSECDPA 279
Query: 505 SRCTGSSSVCPPSAPMSDNTGCLER-GKCRGGKC 537
CTG SS CP + CL+ G C G C
Sbjct: 280 EHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNC 313
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 711 CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRRNE--GAGD--EECDAGLLGTE 761
CGN +E EECD G N+ C CKL+ G GD E+C GTE
Sbjct: 214 CGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTE 268
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 94/278 (33%), Gaps = 67/278 (24%)
Query: 267 AHLFTDLKFEGGILGLAYVGS---PRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNG 323
A L T + F G I+G AY+GS P+R SVG I
Sbjct: 94 AQLITGIDFRGSIIGYAYIGSMCHPKR-SVGII--------------------------- 125
Query: 324 YTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLM 383
I ++ AHE GHN G HD C GG +
Sbjct: 126 ---------------QDYSPINLVLAVIMAHEMGHNLGIHHDDGYCYC------GGYPCI 164
Query: 384 YTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGGI 443
S+S + S++ +F + H G+ I+ P G +
Sbjct: 165 MGPSISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEPLGTDII--------SPPLCGNEL 216
Query: 444 LGLAY---VGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYAT 500
L + G+P C + +L + CC+ CKF G +CR A +
Sbjct: 217 LEVGEECDCGTPENCQNPCCDAATCKLKSGSQCG--HGKCCEQCKFRTSGTECR-ASMSE 273
Query: 501 CEQESRCTGSSSVCPPSAPMSDNTGCLER-GKCRGGKC 537
C+ CTG SS CP + CL+ G C G C
Sbjct: 274 CDPAEHCTGQSSECPADVFHKNGEPCLDNYGYCYNGNC 311
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 480 CCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLER-GKCRGGKC 537
CC+ CKF G +CR A + C+ CTG SS CP + CL+ G C G C
Sbjct: 256 CCEQCKFSKSGTECR-ASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNC 313
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 711 CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRRNE--GAGD--EECDAGLLGTE 761
CGN +E EECD G N+ C CKL+ G GD E+C GTE
Sbjct: 214 CGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTE 268
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 480 CCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLE-RGKCRGGKC 537
CC+ CKF +G CR+A C+ C+G+SS C P+ D C +G C GG+C
Sbjct: 258 CCKKCKFQPMGTVCREA-VNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRC 315
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 106/325 (32%), Gaps = 91/325 (28%)
Query: 222 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILG 281
KI+V S A + KW +LL SR+ SH + A L T + F G G
Sbjct: 74 KIIVQSSADVTLD-------LFAKWRATDLL---SRK-SHDN---AQLLTGINFNGPTAG 119
Query: 282 LAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQ 341
L Y+G GIC Y ++G+ +
Sbjct: 120 LGYLG--------GICNTMY---------------------------SAGIVQDHSKIHH 144
Query: 342 RVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSH 401
V + AHE GHN G +HD D C L S D + K
Sbjct: 145 LVA-----IAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKD---- 195
Query: 402 VDGTNFCLAHLFTHQSFWSRGSSILGLAYIASP-RPYSIGGGILGLAYV--------GSP 452
H+ F + + + P + + + G +V GSP
Sbjct: 196 -------------HREFLIKN---MPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSP 239
Query: 453 RRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSS 512
R C + +L ++ CC C+F G +CR A+ C+ CTG S+
Sbjct: 240 RTCRDPCCDATTCKLRQGAQCAE--GLCCDQCRFKGAGTECRAAK-DECDMADVCTGRSA 296
Query: 513 VCPP-----SAPMSDNTGCLERGKC 532
C P +N G GKC
Sbjct: 297 ECTDRFQRNGQPCKNNNGYCYNGKC 321
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 709 SFCGNLRVEGDEECDAGLLGTEDNDSCCDK-VCKLRRN----EGAGDEECDAGLLGTE 761
+ CGN VE EECD G T D CCD CKLR+ EG ++C GTE
Sbjct: 221 AVCGNYFVEVGEECDCGSPRTC-RDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTE 277
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 427
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 90/278 (32%), Gaps = 67/278 (24%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A LFTD++F+ LG+ ++ G+C Y + G+ Q +N T
Sbjct: 98 ALLFTDMRFDLNTLGITFLA--------GMCQ---------AYRSVGIVQEQGNRNFKTA 140
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
++ AHE HN G HD C+ S+ L
Sbjct: 141 -----------------------VIMAHELSHNLGMYHDGKNCICNDSSCVMSPVLS--- 174
Query: 387 SVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAY---IASPRPYSIGGGI 443
D +K FS+ C H + + I I SP G I
Sbjct: 175 -----DQPSKLFSN-------CSIHDYQRYLTRYKPKCIFNPPLRKDIVSPP--VCGNEI 220
Query: 444 LGLAY---VGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYAT 500
GSP C + +L P N CC CK G CR A+
Sbjct: 221 WEEGEECDCGSPANCQNPCCDAATCKLKPGAECG--NGLCCYQCKIKTAGTVCRRAR-DE 277
Query: 501 CEQESRCTGSSSVCPPSAPMSDNTGCL-ERGKCRGGKC 537
C+ CTG S+ CP + C RG C G C
Sbjct: 278 CDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDC 315
>pdb|2AO7|A Chain A, Adam10 Disintegrin And Cysteine- Rich Domain
Length = 192
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 457 KCCYHSILSE-----LFPVLLYSDKNSPCC-QNCKFMAVGMKCRDAQYATCEQESRCTGS 510
+CCY + E L P S PCC +C F + KCRD + C +E C G
Sbjct: 28 ECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCAFKSKTEKCRDD--SDCAKEGICNGI 85
Query: 511 SSVCPPSAPMSDNTGCLERGK-CRGGKCI-PFCETQNQQSCMC 551
+++CP S P + T C + C G+C CE + C C
Sbjct: 86 TALCPASDPKPNFTDCNRHTQVCINGQCAGSICEKHGLEECTC 128
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 47/162 (29%)
Query: 245 KWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKN 304
+W R+LL S ++ A L T + F+G +G AY G G+C P +
Sbjct: 80 EWRERDLLPRISHDH-------AQLLTAVVFDGNTIGRAYTG--------GMCDPRH--- 121
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEH 364
+ R+H + + AHE GHN G +H
Sbjct: 122 --------------------------SVGVVRDHSKNNLWVA---VTMAHELGHNLGIDH 152
Query: 365 DPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTN 406
D C + S L S D + + +++ N
Sbjct: 153 DTGSCSCGAKSCIMASVLSKVLSYEFSDCSQNQYETYLTNHN 194
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 47/162 (29%)
Query: 245 KWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKN 304
+W R+LL S ++ A L T + F+G +G AY G G+C P +
Sbjct: 80 EWRERDLLPRISHDH-------AQLLTAVVFDGNTIGRAYTG--------GMCDPRH--- 121
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEH 364
+ R+H + + AHE GHN G H
Sbjct: 122 --------------------------SVGVVRDHSKNNLWVA---VTMAHELGHNLGIHH 152
Query: 365 DPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTN 406
D C + S L S D + + +++ N
Sbjct: 153 DTGSCSCGAKSCIMASVLSKVLSYEFSDCSQNQYETYLTNHN 194
>pdb|1Z1X|A Chain A, Crystal Structure Of A Novel Disintegrin From Saw-Scaled
Viper At 3.2 A Resolution
Length = 64
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
PCC+NCKF+ G C+ A CTG +S CP
Sbjct: 24 PCCRNCKFLNAGTICKRAMLDG--LHDYCTGVTSDCP 58
>pdb|3C05|B Chain B, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
pdb|3C05|D Chain D, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
Length = 64
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 480 CCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
CC CKFM G CR A+ + + C G S+ CP
Sbjct: 26 CCDQCKFMKEGTVCRRARGD--DLDDYCNGISAGCP 59
>pdb|1R54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam33
pdb|1R55|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam 33
Length = 214
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 353 AHEFGHNWGSEHDPDMPECSPSASQGGSYLM 383
AHE GH+ G HDPD C +A++ G +M
Sbjct: 141 AHEIGHSLGLSHDPDGC-CVEAAAESGGCVM 170
>pdb|3UCI|A Chain A, Crystal Structure Of Rhodostomin Arlddl Mutant
Length = 72
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 480 CCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
CC+ CKF G CR A+ + + RCTG S+ CP
Sbjct: 36 CCEQCKFSRAGKICRIARLD--DLDDRCTGQSADCP 69
>pdb|1L3X|A Chain A, Solution Structure Of Novel Disintegrin Salmosin
Length = 73
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 751 EECDAGLLGTEDNDSCCDK-VCKLRRNEGATKGTSSFGKRRNKTHTLCRR 799
EECD G G + CCD CKLR+ +G R K T+CRR
Sbjct: 4 EECDCGSPG----NPCCDAATCKLRQGAQCAEGLCCDQCRFMKEGTICRR 49
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 480 CCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
CC C+FM G CR A+ + + C G S+ CP
Sbjct: 34 CCDQCRFMKEGTICRRARGD--DLDDYCNGISAGCP 67
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 350 LVTAHEFGHNWGSEHDPD 367
LV AHEFGH G EH D
Sbjct: 111 LVAAHEFGHAMGLEHSQD 128
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 350 LVTAHEFGHNWGSEHDPD 367
LV AHEFGH G EH D
Sbjct: 116 LVAAHEFGHAMGLEHSQD 133
>pdb|2ECH|A Chain A, Echistatin-The Refined Structure Of A Disintegrin In
Solution By 1h Nmr
Length = 50
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 476 KNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
++ PCC+NCKF+ G C+ A+ + + C G + CP
Sbjct: 3 ESGPCCRNCKFLKEGTICKRARGD--DMDDYCNGKTCDCP 40
>pdb|1RO3|A Chain A, New Structural Insights On Short Disintegrin Echistatin By
Nmr
Length = 49
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 476 KNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
++ PCC+NCKF+ G C+ A+ + + C G + CP
Sbjct: 3 ESGPCCRNCKFLKEGTICKRARGD--DMDDYCNGKTCDCP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,888,725
Number of Sequences: 62578
Number of extensions: 1238410
Number of successful extensions: 2625
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2291
Number of HSP's gapped (non-prelim): 178
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)