RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14093
(857 letters)
>gnl|CDD|239798 cd04270, ZnMc_TACE_like, Zinc-dependent metalloprotease; TACE_like
subfamily. TACE, the tumor-necrosis factor-alpha
converting enzyme, releases soluble TNF-alpha from
transmembrane pro-TNF-alpha.
Length = 244
Score = 274 bits (702), Expect = 4e-86
Identities = 101/211 (47%), Positives = 123/211 (58%), Gaps = 22/211 (10%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRDKWDV 248
IS IDRV IY +T W G++G+GF IK+I +H+ V G YN W V
Sbjct: 30 ISHIDRVDDIYRNTDWDGG----GFKGIGFQIKRIRIHTTPDEVDPGNKFYNKSFPNWGV 85
Query: 249 RNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTL 308
L E D CLAHLFT F+ G LGLAYVGSPR NS GGIC Y
Sbjct: 86 EKFLVKLLLEQFSDDVCLAHLFTYRDFDMGTLGLAYVGSPRDNSAGGICEKAY------- 138
Query: 309 YLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDM 368
Y+ NG YLN+GL+++ N YG+RV T+E+DLVTAHE GHN+GS HDPD+
Sbjct: 139 ----------YYSNGKKKYLNTGLTTTVN-YGKRVPTKESDLVTAHELGHNFGSPHDPDI 187
Query: 369 PECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
EC+P SQGG+Y+MY + SG NNK FS
Sbjct: 188 AECAPGESQGGNYIMYARATSGDKENNKKFS 218
Score = 125 bits (317), Expect = 2e-32
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 95 TRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFV 154
C LLLVAD+RFY+ MG +TTINYLIS IDRV IY +T W G++G+GF
Sbjct: 1 NTCKLLLVADHRFYKYMGRGEEETTINYLISHIDRVDDIYRNTDWDGG----GFKGIGFQ 56
Query: 155 IKKIVVHSDATRVRQGEAHY-----NMIRDKWDVRNLLE 188
IK+I +H+ V G Y N +K+ V+ LLE
Sbjct: 57 IKRIRIHTTPDEVDPGNKFYNKSFPNWGVEKFLVKLLLE 95
Score = 93.6 bits (233), Expect = 3e-21
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHY-----NMIRDKWDVRNLLETFSSHVDGTN 606
D G++G+GF IK+I +H+ V G Y N +K+ V+ LLE FS +
Sbjct: 46 DGGGFKGIGFQIKRIRIHTTPDEVDPGNKFYNKSFPNWGVEKFLVKLLLEQFSD-----D 100
Query: 607 FCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGSIHENLKYFD 651
CLAHLFT++ F LGLAY+ SPR S GG I E Y+
Sbjct: 101 VCLAHLFTYRDF---DMGTLGLAYVGSPRDNSAGG-ICEKAYYYS 141
Score = 45.8 bits (109), Expect = 3e-05
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 367 DMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSIL 426
P+ ++ + + V + V D CLAHLFT++ F L
Sbjct: 64 TTPDEVDPGNKFYNKSFPNWGVEKFLVKLLLEQFSDD---VCLAHLFTYRDF---DMGTL 117
Query: 427 GLAYIASPRPYSIGG 441
GLAY+ SPR S GG
Sbjct: 118 GLAYVGSPRDNSAGG 132
Score = 38.1 bits (89), Expect = 0.012
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 688 LRSIRKVLEAKSGKCFSEPEESF 710
+SI KVLE KS CF E +SF
Sbjct: 222 KKSISKVLEVKSNSCFVERSQSF 244
>gnl|CDD|240257 PTZ00073, PTZ00073, 60S ribosomal protein L37; Provisional.
Length = 91
Score = 140 bits (354), Expect = 2e-39
Identities = 53/74 (71%), Positives = 61/74 (82%)
Query: 779 ATKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTG 838
TKGT SFGKR KTHTLCRRCGK S+H+QKK+CA CGYP ++R YNWSVKA+RR+TTG
Sbjct: 1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTG 60
Query: 839 TGRMRHLKIVRRRF 852
TGR R+LK V RR
Sbjct: 61 TGRCRYLKTVARRA 74
>gnl|CDD|145202 pfam01907, Ribosomal_L37e, Ribosomal protein L37e. This family
includes ribosomal protein L37 from eukaryotes and
archaebacteria. The family contains many conserved
cysteines and histidines suggesting that this protein
may bind to zinc.
Length = 54
Score = 105 bits (263), Expect = 2e-27
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQR 833
TKGT SFGKR KTHTLCRRCG+ SYH+QKK+CA CG+P + R YNWS KA+R
Sbjct: 1 TKGTPSFGKRNKKTHTLCRRCGRRSYHVQKKRCASCGFPRAKRRRYNWSKKAKR 54
>gnl|CDD|225037 COG2126, RPL37A, Ribosomal protein L37E [Translation, ribosomal
structure and biogenesis].
Length = 61
Score = 89.8 bits (223), Expect = 4e-22
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPC-PRLRHYNWSVKAQRRKTTG 838
+KGT SFGKR KTH CRRCG+ SYH++KK CA CG+ R+R YNW K +RRKT G
Sbjct: 2 SKGTPSFGKRNKKTHIRCRRCGRRSYHVRKKYCAACGFGRSARMRSYNWQAKKKRRKTIG 61
>gnl|CDD|222320 pfam13688, Peptidase_M84, Metallo-peptidase family M84.
Length = 193
Score = 84.8 bits (210), Expect = 1e-18
Identities = 39/222 (17%), Positives = 62/222 (27%), Gaps = 69/222 (31%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRDKWDV 248
I+L++ +Y + + + + + +
Sbjct: 30 INLVNTASNVYEREF-----------NISLGLVNLTISDSTCPYTPPASS------SGNA 72
Query: 249 RNLLEVF----SREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKN 304
+LL F + D LA+ G GLA++G + G + + +
Sbjct: 73 SDLLSRFQAFSAWRGRQND-DLAYWTLMTNCSTG--GLAWLGQLCNSGSAGSVSNQVSGS 129
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEH 364
V T V AHE GHN+G+ H
Sbjct: 130 ----------------------------------ANVVVGTATEWQVFAHEIGHNFGAVH 155
Query: 365 DPDM----PECSPSAS---QGGSYLMYTYSVSGYDVNNKTFS 399
D D C S+S GG Y+M S N FS
Sbjct: 156 DCDSSTESQCCPLSSSTCPAGGRYIMNPSSSP----NITYFS 193
Score = 36.6 bits (85), Expect = 0.028
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 96 RCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVI 155
LL+ AD + GG++ +I+L++ +Y + +
Sbjct: 4 TVALLVAADCSYVAAFGGTD--AAQANIINLVNTASNVYEREF-----------NISLGL 50
Query: 156 KKIVVHS 162
+ +
Sbjct: 51 VNLTISD 57
Score = 31.2 bits (71), Expect = 1.5
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 558 GMGFVIKKIVVHSDATRVRQGEAHYNMIRDKWDVRNLL---ETFSSHVDGTNFCLAHLFT 614
+ + + + + + +LL + FS+ N LA+
Sbjct: 45 NISLGLVNLTISDSTCPYTPPASS------SGNASDLLSRFQAFSAWRGRQNDDLAYWTL 98
Query: 615 HQSFWSRGSSILG 627
+ + G + LG
Sbjct: 99 MTNCSTGGLAWLG 111
>gnl|CDD|222233 pfam13574, Reprolysin_2, Metallo-peptidase family M12B
Reprolysin-like. This zinc-binding metallo-peptidase
has the characteristic binding motif HExxGHxxGxxH of
Reprolysin-like peptidases of family M12B.
Length = 173
Score = 82.7 bits (205), Expect = 3e-18
Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 64/210 (30%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDAT-RVRQGEAHYNMIRDK-- 245
++ ++RV+ +Y F I+ ++V++D YN +
Sbjct: 9 VNTVNRVNGVYER---------------DFNIRLVLVNNDRLIFTDPATDPYNNNCNGGT 53
Query: 246 WDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNG 305
N S ++ + HLF+ F GG LGLA++G GIC Y G
Sbjct: 54 LLSENQNL-LSNLIGEANYDIGHLFST--FGGGGLGLAWLG--------GICQKGYKGTG 102
Query: 306 YTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHD 365
T G E D V AHE GH +G+ H
Sbjct: 103 ST-----------------------------TPSGDPF---EID-VVAHEIGHQFGANHT 129
Query: 366 PDM--PECSPSASQGGSYLMYTYSVSGYDV 393
S + GS +M + +
Sbjct: 130 FSGGCEGSSATEPGSGSTIMSYAGICNNTL 159
Score = 32.3 bits (74), Expect = 0.55
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 543 TQNQQSCMCDVNGYRGMGFVIKKIVVHSDAT-RVRQGEAHYNMIRDK--WDVRNLLETFS 599
+ + VNG F I+ ++V++D YN + N S
Sbjct: 5 LAAMVNTVNRVNGVYERDFNIRLVLVNNDRLIFTDPATDPYNNNCNGGTLLSENQN-LLS 63
Query: 600 SHVDGTNFCLAHLFTHQSFWSRGSSILGLAYI 631
+ + N+ + HLF+ + G LGLA++
Sbjct: 64 NLIGEANYDIGHLFS-----TFGGGGLGLAWL 90
Score = 30.7 bits (70), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 394 NNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYI 431
N S+ + N+ + HLF+ + G LGLA++
Sbjct: 58 NQNLLSNLIGEANYDIGHLFS-----TFGGGGLGLAWL 90
>gnl|CDD|235242 PRK04179, rpl37e, 50S ribosomal protein L37e; Reviewed.
Length = 62
Score = 74.3 bits (183), Expect = 1e-16
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 780 TKGTSSFGKR-RNKTHTLCRRCGKSSYHIQKKKCAQCGY-PCPRLRHYNWSVKAQRRK 835
+KGT S GKR + KTH CRRCG+ SY+++KK CA CG+ R+R Y+W K K
Sbjct: 2 SKGTPSMGKRNKGKTHIRCRRCGRHSYNVRKKYCAACGFGRSKRIRRYSWQNKKVNGK 59
>gnl|CDD|239795 cd04267, ZnMc_ADAM_like, Zinc-dependent metalloprotease, ADAM_like
or reprolysin_like subgroup. The adamalysin_like or ADAM
family of metalloproteases contains proteolytic domains
from snake venoms, proteases from the mammalian
reproductive tract, and the tumor necrosis factor alpha
convertase, TACE. ADAMs (A Disintegrin And
Metalloprotease) are glycoproteins, which play roles in
cell signaling, cell fusion, and cell-cell interactions.
Length = 192
Score = 75.5 bits (186), Expect = 2e-15
Identities = 60/247 (24%), Positives = 87/247 (35%), Gaps = 74/247 (29%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
++VV +D V + N+++ + LI+ + IY T + G+
Sbjct: 4 ELVVVADHRMVSYFNSDENILQ--AYI-----TELINIANSIYRST--------NLRLGI 48
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNMIRD-KWDVRNLLEVFS--REYSHKDFCLAHLFTDL 273
++ + ++ +GE D N L FS R A L T
Sbjct: 49 RISLEGL-------QILKGE---QFAPPIDSDASNTLNSFSFWRAEGPIRHDNAVLLTAQ 98
Query: 274 KF-EGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGL 332
F EG ILGLAYVGS +C P Y + G+
Sbjct: 99 DFIEGDILGLAYVGS--------MCNP---------------------------YSSVGV 123
Query: 333 SSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYD 392
T L AHE GHN G+EHD E + GG+Y+M SG
Sbjct: 124 VEDTGF------TLLTALTMAHELGHNLGAEHDGG-DELAFECDGGGNYIMA-PVDSG-- 173
Query: 393 VNNKTFS 399
+N+ FS
Sbjct: 174 LNSYRFS 180
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 589 WDVRNLLETFS--SHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGSIHE 645
D N L +FS A L T Q F ILGLAY+ S + E
Sbjct: 69 SDASNTLNSFSFWRAEGPIRHDNAVLLTAQDF--IEGDILGLAYVGSMCNPYSSVGVVE 125
Score = 37.4 bits (87), Expect = 0.015
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 97 CPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIK 156
L++VAD+R Y+ LI+ + IY T + G+ ++
Sbjct: 3 IELVVVADHRMVSYFNSDE-NILQAYITELINIANSIYRST--------NLRLGIRISLE 53
Query: 157 KIVV 160
+ +
Sbjct: 54 GLQI 57
Score = 35.5 bits (82), Expect = 0.061
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 392 DVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGGI 443
+N+ +F A L T Q F ILGLAY+ S G+
Sbjct: 74 TLNSFSFWRAEGPIRHDNAVLLTAQDF--IEGDILGLAYVGSMCNPYSSVGV 123
>gnl|CDD|215784 pfam00200, Disintegrin, Disintegrin.
Length = 76
Score = 53.0 bits (128), Expect = 7e-09
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 477 NSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPM 520
PCC CKF G CR A C+ CTG S+ CPP
Sbjct: 34 TGPCCDQCKFKPAGTVCRPASG-ECDLPEYCTGQSAECPPDVYK 76
Score = 37.2 bits (87), Expect = 0.002
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 717 EGDEECDAGLLGTEDNDSCCD-KVCKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLR 774
E EECD G E + CCD CKL+ GA +C G CCD+ CK +
Sbjct: 1 EEGEECDCGSPE-ECQNPCCDATTCKLK--PGA---QCATGP--------CCDQ-CKFK 44
>gnl|CDD|214490 smart00050, DISIN, Homologues of snake disintegrins. Snake
disintegrins inhibit the binding of ligands to integrin
receptors. They contain a 'RGD' sequence, identical to
the recognition site of many adhesion proteins.
Molecules containing both disintegrin and
metalloprotease domains are known as ADAMs.
Length = 75
Score = 46.5 bits (111), Expect = 1e-06
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 477 NSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
+ PCC NCKF G CR + C+ C G+S+ CPP
Sbjct: 34 SGPCCDNCKFKPAGTLCRPSV-DECDLPEYCNGTSADCPP 72
Score = 34.2 bits (79), Expect = 0.025
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 717 EGDEECDAGLLGTEDNDSCCDKV-CKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRR 775
E EECD G E D CCD CKL+ +C +G CCD CK +
Sbjct: 1 EEGEECDCGSPK-ECTDPCCDPATCKLKPG-----AQCASGP--------CCDN-CKFKP 45
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease. This super-family of
metalloproteases contains two major branches, the
astacin-like proteases and the
adamalysin/reprolysin-like proteases. Both branches have
wide phylogenetic distribution, and contain
sub-families, which are involved in vertebrate
development and disease.
Length = 167
Score = 48.3 bits (115), Expect = 2e-06
Identities = 30/145 (20%), Positives = 39/145 (26%), Gaps = 49/145 (33%)
Query: 265 CLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGY 324
+A L T F+GG G AY+G + G
Sbjct: 53 DIAILVTRQDFDGGTGGWAYLGRVCDSLRGVG---------------------------- 84
Query: 325 TLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHD---------PDMPECSPSA 375
N G T+E AHE GH G HD P + + +
Sbjct: 85 --------VLQDNQSG----TKEGAQTIAHELGHALGFYHDHDRKDRDDYPTIDDTLNAE 132
Query: 376 SQGGSYLMYTYSVSGYDVNNKTFSS 400
+M S D K FS
Sbjct: 133 DDDYYSVMSYTKGSFSDGQRKDFSQ 157
>gnl|CDD|239797 cd04269, ZnMc_adamalysin_II_like, Zinc-dependent metalloprotease;
adamalysin_II_like subfamily. Adamalysin II is a snake
venom zinc endopeptidase. This subfamily contains other
snake venom metalloproteinases, as well as
membrane-anchored metalloproteases belonging to the ADAM
family. ADAMs (A Disintegrin And Metalloprotease) are
glycoproteins, which play roles in cell signaling, cell
fusion, and cell-cell interactions.
Length = 194
Score = 44.1 bits (105), Expect = 8e-05
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 49/134 (36%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T F+G +GLAY VGG+C+P+Y Q
Sbjct: 90 AQLLTGRDFDGNTVGLAY--------VGGMCSPKY-----------SGGVVQDH------ 124
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
+ +T AHE GHN G EHD C+ + +M
Sbjct: 125 ---------SRNLLLFAVT------MAHELGHNLGMEHDD--GGCT---CGRSTCIMAPS 164
Query: 387 SVSGYDVNNKTFSS 400
S FS+
Sbjct: 165 PSSL----TDAFSN 174
Score = 31.8 bits (73), Expect = 0.90
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND----------TIWHDR 142
L++V D Y++ GSN +I +++ V IY IW D+
Sbjct: 5 LVVVVDNSLYKKY-GSNLSKVRQRVIEIVNIVDSIYRPLNIRVVLVGLEIWTDK 57
>gnl|CDD|222240 pfam13582, Reprolysin_3, Metallo-peptidase family M12B
Reprolysin-like. This zinc-binding metallo-peptidase
has the characteristic binding motif HExxGHxxGxxH of
Reprolysin-like peptidases of family M12B.
Length = 123
Score = 42.7 bits (101), Expect = 8e-05
Identities = 28/120 (23%), Positives = 36/120 (30%), Gaps = 41/120 (34%)
Query: 246 WDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNG 305
+ NL VF + + HLF+ GG GLAYVG G+C
Sbjct: 45 ETLDNLQTVFDARIGTAGYDIGHLFSGYDG-GGGCGLAYVG--------GVCNS------ 89
Query: 306 YTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHD 365
K G + V AHE GHN+G+ H
Sbjct: 90 -------------GKKAGVS-------------ASSSPTGDFGIDVVAHEIGHNFGANHT 123
Score = 30.8 bits (70), Expect = 0.99
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 589 WDVRNLLETFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGSI 643
+ NL F + + + + HLF+ G GLAY+ +
Sbjct: 45 ETLDNLQTVFDARIGTAGYDIGHLFSGYD----GGGGCGLAYVGGVCNSGKKAGV 95
>gnl|CDD|222241 pfam13583, Reprolysin_4, Metallo-peptidase family M12B
Reprolysin-like. This zinc-binding metallo-peptidase
has the characteristic binding motif HExxGHxxGxxH of
Reprolysin-like peptidases of family M12B.
Length = 195
Score = 38.9 bits (91), Expect = 0.005
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 51/136 (37%)
Query: 251 LLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYL 310
L F+ K++ L HLFT GLA++G+ +N+ GG
Sbjct: 77 RLATFNSWRGSKNYDLGHLFTM---YTSNCGLAWLGALCQNAKGGGV------------- 120
Query: 311 NSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHD-PDMP 369
+ + + AHE GH +G+ HD
Sbjct: 121 ----------------------ARPTKEFD----------IFAHEIGHLFGAAHDCTSSG 148
Query: 370 ECSPSASQ--GGSYLM 383
E + SA++ G+ +M
Sbjct: 149 ETASSATEPDSGNTIM 164
Score = 30.8 bits (70), Expect = 1.9
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 93 TKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTI 138
T+ L +VADY +Y GGS K + +++ R++++Y +
Sbjct: 1 TRRTYRLAVVADYSYYSIFGGSVDKVKAF-INNVVARLNEVYGRNV 45
>gnl|CDD|216491 pfam01421, Reprolysin, Reprolysin (M12B) family zinc
metalloprotease. The members of this family are enzymes
that cleave peptides. These proteases require zinc for
catalysis. Members of this family are also known as
adamalysins. Most members of this family are snake venom
endopeptidases, but there are also some mammalian
proteins such as human ADAM8 and fertilin. Fertilin and
closely related proteins appear to not have some active
site residues and may not be active enzymes.
Length = 198
Score = 35.7 bits (83), Expect = 0.056
Identities = 33/147 (22%), Positives = 43/147 (29%), Gaps = 57/147 (38%)
Query: 245 KWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKN 304
+W +LL+ K A L T + F+G +G AY VGG+C+P+
Sbjct: 75 EWRETDLLK-------RKSHDNAQLLTGIDFDGNTIGAAY--------VGGMCSPKR--- 116
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVT-AHEFGHNWGSE 363
S VT AHE GHN G
Sbjct: 117 ----------------------------SVGVVQDHS--PIVLLVAVTMAHELGHNLGMT 146
Query: 364 HDPDM------PEC--SPSASQGGSYL 382
HD C +P AS
Sbjct: 147 HDDIDGCTCGGGGCIMNPVASSSPGKK 173
Score = 31.4 bits (72), Expect = 1.4
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 24/76 (31%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND----------TIWHDRSEQDGY 148
L +V D+ + + GS+ + +++ V++IY IW S+ D
Sbjct: 5 LFIVVDHGMFTKY-GSDLNKIRQRVHQIVNLVNEIYRPLNIRVVLVGLEIW---SDGD-- 58
Query: 149 RGMGFVIKKIVVHSDA 164
KI V DA
Sbjct: 59 --------KITVQGDA 66
>gnl|CDD|239801 cd04273, ZnMc_ADAMTS_like, Zinc-dependent metalloprotease,
ADAMTS_like subgroup. ADAMs (A Disintegrin And
Metalloprotease) are glycoproteins, which play roles in
cell signaling, cell fusion, and cell-cell interactions.
This particular subfamily represents domain
architectures that combine ADAM-like metalloproteinases
with thrombospondin type-1 repeats. ADAMTS (a
disintegrin and metalloproteinase with thrombospondin
motifs) proteinases are inhibited by TIMPs (tissue
inhibitors of metalloproteinases), and they play roles
in coagulation, angiogenesis, development and
progression of arthritis. They hydrolyze the von
Willebrand factor precursor and various components of
the extracellular matrix.
Length = 207
Score = 35.3 bits (82), Expect = 0.087
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 351 VTAHEFGHNWGSEHDPDMPECSPSASQG 378
AHE GH G HD D C P G
Sbjct: 143 TIAHELGHVLGMPHDGDGNSCGPEGKDG 170
Score = 30.7 bits (70), Expect = 2.3
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L+VAD + + G + + Y+++L++ V +Y D
Sbjct: 5 TLVVADSKMVEFHHGEDLEH---YILTLMNIVASLYKD 39
>gnl|CDD|239799 cd04271, ZnMc_ADAM_fungal, Zinc-dependent metalloprotease,
ADAM_fungal subgroup. The adamalysin_like or ADAM (A
Disintegrin And Metalloprotease) family of
metalloproteases are integral membrane proteases acting
on a variety of extracellular targets. They are involved
in shedding soluble peptides or proteins from the cell
surface. This subfamily contains fungal ADAMs, whose
precise function has yet to be determined.
Length = 228
Score = 35.1 bits (81), Expect = 0.099
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 329 NSGLSSSRN--HYGQRVITREAD--LVTAHEFGHNWGSEHDPDMPECSPSASQGGS 380
+G S N G V+ R ++ V AHE GH +G+ HD CS +
Sbjct: 122 RTGASDQGNETVAGTNVVVRTSNEWQVFAHEIGHTFGAVHDCTSGTCSDGSVGSQQ 177
>gnl|CDD|200169 TIGR02232, myxo_disulf_rpt, Myxococcus cysteine-rich repeat. This
model represents a sequence region shared between
several proteins of Myxococcus xanthus DK 1622 and some
eukaryotic proteins that include human pappalysin-1
(SP|Q13219). The region of about 40 amino acids contains
several conserved Cys residues presumed to form
disulfide bonds. The region appears in up to 13 repeats
in Myxococcus.
Length = 38
Score = 29.6 bits (67), Expect = 0.44
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 711 CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRR 744
CG+ +E EECD G T D C C+L
Sbjct: 4 CGDGIIEPGEECDDG--NTTSGDG-CSATCRLEE 34
>gnl|CDD|184418 PRK13958, PRK13958, N-(5'-phosphoribosyl)anthranilate isomerase;
Provisional.
Length = 207
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 636 PYSIGGSIH-ENLKYFDTLHSSHISHTIVKRGVQESNHP-FNKIKEV 680
PY I G I+ EN++ + L SH + I G++ + NK+ +
Sbjct: 154 PYLIAGGINSENIQTVEQLKLSHQGYDIAS-GIETNGRKDINKMTAI 199
>gnl|CDD|117046 pfam08469, NPHI_C, Nucleoside triphosphatase I C-terminal. This
viral domain is found to the C-terminus of Poxvirus
nucleoside triphosphatase phosphohydrolase I (NPH I)
together with the helicase conserved C-terminal domain
(pfam00271).
Length = 148
Score = 30.4 bits (69), Expect = 1.9
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 642 SIHENLKYFDTLHSSHISHTIVKRGVQESNHP--FNKIKE---VTFKTLGNLRSIRKVLE 696
IH + K F+ + + R + E+N K+ + + L +I K +
Sbjct: 56 WIHSHYKDFEPVDDESGFRALRSRRIDENNKSNVIVKLALGQNIWYSKSYRLVTIHKGFK 115
Query: 697 AKSGKCFSE 705
K G+ +
Sbjct: 116 TKDGRIYDS 124
>gnl|CDD|218407 pfam05061, Pox_A11, Poxvirus A11 Protein. Family of conserved
Chordopoxvirinae A11 family proteins. Conserved region
spans entire protein in the majority of family members.
Length = 309
Score = 31.3 bits (71), Expect = 2.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 669 ESNHPFNKIKEVTFKTLGNLRSIRKVLEAKSGKCFSEPEESFCGNLRVEGDEECDAGLLG 728
E +P NK E+T L LR++ L AK+ S P+ + + + D L+
Sbjct: 20 EDGYPSNKNYEITTGQLSILRTVNDKLLAKT----SSPD---------DYESDVDESLIP 66
Query: 729 TEDNDSCC 736
+D+
Sbjct: 67 DDDSPRTI 74
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 31.6 bits (72), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 794 HTLCRRCGKSSYHIQKKKCAQCGYPCP 820
+ C++CG S H K C QCG P
Sbjct: 15 NRFCQKCGTSLTH---KPCPQCGTEVP 38
>gnl|CDD|215908 pfam00413, Peptidase_M10, Matrixin. The members of this family are
enzymes that cleave peptides. These proteases require
zinc for catalysis.
Length = 159
Score = 30.3 bits (69), Expect = 2.4
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 350 LVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMY-TYS 387
LV AHE GH G H D P A +MY YS
Sbjct: 110 LVAAHEIGHALGLGHSSD-----PDA------IMYPYYS 137
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 31.0 bits (71), Expect = 3.4
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 797 CRRCGKSSYHIQKKKCAQCG------YPCPRLRHYNWSVKAQR--RKTTGTGRMR 843
C CGK ++ ++C CG Y CPR + ++ R+ T + +
Sbjct: 629 CPSCGKETF---YRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKRK 680
>gnl|CDD|220768 pfam10462, Peptidase_M66, Peptidase M66. This family of
metallopeptidases contains StcE, a virulence factor
found in Shiga toxigenic Escherichia coli organisms.
StcE peptidase cleaves C1 esterase inhibitor.
Length = 304
Score = 30.4 bits (69), Expect = 3.7
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 354 HEFGHNWGSEHDPDMPECSP--SASQGGSYLMYTYSVSGYDVNNKTF 398
HE GHN+G H P SP S S G S G+D N+ F
Sbjct: 198 HEQGHNYGLGHYPAGEAGSPYRSGSLLG-------SEWGWDANHNRF 237
>gnl|CDD|184942 PRK14980, PRK14980, DNA-directed RNA polymerase subunit G;
Provisional.
Length = 127
Score = 29.4 bits (66), Expect = 4.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 240 NMIRDKWDVRNLLEVFSREYSHKDFCLAH--LFTDLKFEGG 278
N+ K V+ ++ Y++ DFC AH + T+ G
Sbjct: 47 NIFSQKEKVKAIISKERPSYTNDDFC-AHGYIVTESSNNGN 86
>gnl|CDD|99898 cd05837, MSH6_like, The PWWP domain is present in MSH6, a mismatch
repair protein homologous to bacterial MutS. The PWWP
domain of histone-lysine N-methyltransferase, also known
as Nuclear SET domain-containing protein 3, is also
included. Mutations in MSH6 have been linked to
increased cancer susceptibility, particularly in
hereditary nonpolyposis colorectal cancer in humans.
The role of the PWWP domain in MSH6 is not clear; MSH6
orthologs found in S. cerevisiae, Caenorhabditis elegans
and Arabidopsis thaliana lack the PWWP domain. Histone
methyltransferases (HMTases) induce the
posttranslational methylation of lysine residues in
histones and play a role in apoptosis. In the HMTase
Whistle, the PWWP domain is necessary for HMTase
activity. The PWWP domain, named for a conserved
Pro-Trp-Trp-Pro motif, is a small domain consisting of
100-150 amino acids. The PWWP domain is found in
numerous proteins that are involved in cell division,
growth and differentiation. Most PWWP-domain proteins
seem to be nuclear, often DNA-binding, proteins that
function as transcription factors regulating a variety
of developmental processes.
Length = 110
Score = 28.9 bits (65), Expect = 4.2
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 349 DLVTAHEFGHNWGS---EHDPDMPECSPSASQGGSYLMY 384
DLV A G+ W DP + + + Y
Sbjct: 7 DLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQY 45
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 30.3 bits (69), Expect = 4.7
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 27/103 (26%)
Query: 376 SQGGSYLM--YTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFW--SRGSSILG---- 427
QG S + Y + N K ++ L ++F F S +++LG
Sbjct: 284 GQGVSLNVLAYAITYVDSLPNGKNYTYGFLLQGI-LGNIFGLSPFIGQSVENALLGNSLA 342
Query: 428 --LAYIASPRPYSIGGGILGLAYVGSPRRNSKCCYHSILSELF 468
L+Y+ +P Y +GGG +GS S ++EL+
Sbjct: 343 HRLSYLLNPDTYLLGGG------LGS----------SYIAELY 369
>gnl|CDD|188777 cd09391, LIM1_Lrg1p_like, The first LIM domain of Lrg1p, a LIM and
RhoGap domain containing protein. The first LIM domain
of Lrg1p, a LIM and RhoGap domain containing protein:
The members of this family contain three tandem repeats
of LIM domains and a Rho-type GTPase activating protein
(RhoGap) domain. Lrg1p is a Rho1 GTPase-activating
protein required for efficient cell fusion in yeast.
Lrg1p-GAP domain strongly and specifically stimulates
the GTPase activity of Rho1p, a regulator of beta
(1-3)-glucan synthase in vitro. The LIM domain is 50-60
amino acids in size and shares two characteristic zinc
finger motifs. The two zinc fingers contain eight
conserved residues, mostly cysteines and histidines,
which coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein.
Length = 57
Score = 26.9 bits (60), Expect = 6.8
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 11/34 (32%)
Query: 797 CRRCGK-----------SSYHIQKKKCAQCGYPC 819
C +CGK YH+ C CG P
Sbjct: 1 CAKCGKPITGQFVRALGDVYHLDCFTCHDCGKPV 34
>gnl|CDD|215548 PLN03042, PLN03042, Lactoylglutathione lyase; Provisional.
Length = 185
Score = 29.0 bits (65), Expect = 6.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 355 EFGHNWGSEHDPDM 368
E HNWG+E DP+
Sbjct: 96 ELTHNWGTESDPEF 109
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 29.6 bits (67), Expect = 6.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 41 WDHAHDKPASPCGYVKEEFNTTDFDLDMEEDDPDMPHTRSKRQ 83
W+H ++PA +K +T++FD D EE D D+P + +
Sbjct: 304 WEHIRERPAPIIPELKSITDTSNFD-DFEEIDLDVPTSPGPPR 345
>gnl|CDD|237325 PRK13267, PRK13267, archaemetzincin-like protein; Reviewed.
Length = 179
Score = 28.8 bits (65), Expect = 7.8
Identities = 36/153 (23%), Positives = 47/153 (30%), Gaps = 48/153 (31%)
Query: 265 CLAHLFTD-LKFEGGILGLAYVG-------SPRRNSVGGICTPEYFKNGYTLYLNSGLSS 316
A F L G G +G N V G+ P L + S
Sbjct: 53 YRAEKFLPLLSRIGRFNGDKNIGITDCDLYYRGLNFVFGLAYPN---------LRGAVIS 103
Query: 317 SQYFKNGYTLYLNS-GLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSA 375
+ Y L G + +RV +E HE GH G EH + P C
Sbjct: 104 T------YRLRPEFYGNKPDSELFEERVR-KEV----THELGHTLGLEHCDN-PRC---- 147
Query: 376 SQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFC 408
+M +S S DV+ K NFC
Sbjct: 148 ------VMN-FSNSVRDVDIK-------EPNFC 166
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial
Aminopeptidase N. This family contains bacterial
aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC
3.4.11.2), a Type II integral membrane protease
belonging to the M1 gluzincin family. APN consists of a
small N-terminal cytoplasmic domain, a single
transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and, in higher eukaryotes,
is present in a variety of human tissues and cell types
(leukocyte, fibroblast, endothelial and epithelial
cells). APN expression is dysregulated in inflammatory
diseases such as chronic pain, rheumatoid arthritis,
multiple sclerosis, systemic sclerosis, systemic lupus
erythematosus, polymyositis/dermatomyosytis and
pulmonary sarcoidosis, and is enhanced in tumor cells
such as melanoma, renal, prostate, pancreas, colon,
gastric and thyroid cancers. It is predominantly
expressed on stem cells and on cells of the granulocytic
and monocytic lineages at distinct stages of
differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 435
Score = 29.2 bits (66), Expect = 9.3
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 340 GQRVITREADL--VTAHEFGHNW 360
G RV+ L V AHE H W
Sbjct: 278 GGRVLRLPFILETVLAHEIAHQW 300
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,909,640
Number of extensions: 4086230
Number of successful extensions: 2980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2946
Number of HSP's successfully gapped: 78
Length of query: 857
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 752
Effective length of database: 6,280,432
Effective search space: 4722884864
Effective search space used: 4722884864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)