RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14093
(857 letters)
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 149 bits (376), Expect = 1e-40
Identities = 106/254 (41%), Positives = 139/254 (54%), Gaps = 37/254 (14%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
K++V +D R + ++ N L I LIDRV IY +T W + G++G
Sbjct: 9 KLLVVADHRFYR----YMGR-GEESTTTNYL-IELIDRVDDIYRNTAW----DNAGFKGY 58
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNM-------IRDKWDVRNLLEVFS--REYSHKDFCLA 267
G I++I + V+ GE HYNM +D WDV+ LLE FS CLA
Sbjct: 59 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 118
Query: 268 HLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLY 327
HLFT F+ G LGLAY GSPR NS GG+C Y +Y
Sbjct: 119 HLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAY----------------YSPVGKKNIY 162
Query: 328 LNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPD-MPECSPSASQGGSYLMYTY 386
LNSGL+S++N YG+ ++T+EADLVT HE GHN+G+EHDPD + EC+P+ QGG Y+MY
Sbjct: 163 LNSGLTSTKN-YGKTILTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPI 221
Query: 387 SVSGYDVNNKTFSS 400
+VSG NNK FS
Sbjct: 222 AVSGDHENNKMFSQ 235
Score = 81.4 bits (200), Expect = 3e-17
Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 3 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 58
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNM-------IRDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 59 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 118
Query: 205 H---DRSEQDGYRGMGFV 219
H + G G+ +
Sbjct: 119 HLFTYQDFDMGTLGLAYG 136
Score = 59.8 bits (144), Expect = 7e-10
Identities = 42/99 (42%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNM-------IRDKWDVRNLLETFS--SHV 602
D G++G G I++I + V+ GE HYNM +D WDV+ LLE FS
Sbjct: 51 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 110
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
+ + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 111 EASKVCLAHLFTYQDFD---MGTLGLAYGGSPRANSHGG 146
Score = 35.9 bits (82), Expect = 0.035
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 394 NNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY SPR S GG
Sbjct: 102 EQFSFDIAEEASKVCLAHLFTYQDFD---MGTLGLAYGGSPRANSHGG 146
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 142 bits (360), Expect = 5e-38
Identities = 100/222 (45%), Positives = 127/222 (57%), Gaps = 31/222 (13%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRD---- 244
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM +
Sbjct: 41 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 96
Query: 245 ---KWDVRNLLEVFS--REYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
WDV+ LLE FS CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 97 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 156
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 157 AY----------------YSPVGKKNIYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 199
Query: 360 WGSEHDPD-MPECSPSASQGGSYLMYTYSVSGYDVNNKTFSS 400
+G+EHDPD + EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 200 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQ 241
Score = 75.9 bits (186), Expect = 4e-15
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 89 EYKPTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGY 148
+ P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G+
Sbjct: 6 DPDPMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGF 61
Query: 149 RGMGFVIKKIVVHSDATRVRQGEAHYNMIRD-------KWDVRNLLEISLIDRVHKIYND 201
+G G I++I + V+ GE HYNM + WDV+ LLE D +
Sbjct: 62 KGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKV 121
Query: 202 TIWH---DRSEQDGYRGMGFV 219
+ H + G G+ +V
Sbjct: 122 CLAHLFTYQDFDMGTLGLAYV 142
Score = 74.0 bits (181), Expect = 2e-14
Identities = 64/228 (28%), Positives = 87/228 (38%), Gaps = 57/228 (25%)
Query: 552 DVNGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRD-------KWDVRNLLETFS--SHV 602
D G++G G I++I + V+ GE HYNM + WDV+ LLE FS
Sbjct: 57 DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAE 116
Query: 603 DGTNFCLAHLFTHQSFWSRGSSILGLAYIASPR---------PYSIGGSIHENLKYFDTL 653
+ + CLAHLFT+Q F LGLAY+ SPR +N+ L
Sbjct: 117 EASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGGVCPKAYYSPVGKKNIYLNSGL 173
Query: 654 HSSHISHTIVKRGV------QESNHPFNKI-----------------------KEVTFKT 684
S+ + E H F V+
Sbjct: 174 TSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDH 233
Query: 685 LGN-------LRSIRKVLEAKSGKCFSEPEESFCGNLRVEGDEECDAG 725
N +SI K +E+K+ +CF E CGN RV+ EECD G
Sbjct: 234 ENNKMFSQCSKQSIYKTIESKAQECFQERSNKVCGNSRVDEGEECDPG 281
Score = 33.5 bits (76), Expect = 0.26
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 394 NNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 108 EQFSFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 152
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 1s1i_Y
3jyw_Y
Length = 94
Score = 135 bits (340), Expect = 1e-37
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGT 839
KGT SFGKRRNKTHTLC RCG+ S+H+QK C+ CGYP R+R YNWSVKA RRKTTGT
Sbjct: 2 GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGT 61
Query: 840 GRMRHLKIVRRRF 852
GRMR+++ V RRF
Sbjct: 62 GRMRYMRHVPRRF 74
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} SCOP: i.1.1.1
Length = 97
Score = 133 bits (336), Expect = 4e-37
Identities = 57/73 (78%), Positives = 61/73 (83%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTGT 839
TKGTSSFGKRRNKTHTLCRRCG +YH+QK C +CGYP R R YNWS KA+RR TTGT
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 840 GRMRHLKIVRRRF 852
GRMRHLKIV RRF
Sbjct: 62 GRMRHLKIVYRRF 74
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A
4a1d_A
Length = 94
Score = 132 bits (333), Expect = 1e-36
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYN-WSVKAQRRKTTG 838
T+GT +FGKR KTHTLCRRCGK++YH QK +CA CGYP ++R Y+ W K + RK G
Sbjct: 2 TRGTPAFGKRHQKTHTLCRRCGKATYHKQKLRCAACGYPDAKMRRYDGWGQKVRDRKGQG 61
Query: 839 TGRMRHLKIVRRRF 852
TGRMR++K + RR
Sbjct: 62 TGRMRYMKTIARRA 75
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1*
1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1*
1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1*
1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Length = 57
Score = 102 bits (255), Expect = 1e-26
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 780 TKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGY-PCPRLRHYNWSVKA 831
GT S GK+ THT CRRCG+ SYH +KK C+ CG+ + R Y W KA
Sbjct: 3 GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 55
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 102 bits (255), Expect = 3e-23
Identities = 69/315 (21%), Positives = 91/315 (28%), Gaps = 69/315 (21%)
Query: 238 HYNMIRDKWDVRNLLEVFSRE-----YSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNS 292
+ N I + DVR L +F K A L T + F G +GLAY+G
Sbjct: 69 NINEINVQSDVRATLNLFGEWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAYIG------ 122
Query: 293 VGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVT 352
IC P+ Y + +
Sbjct: 123 --SICNPKTSAAVVQDYSSRTRMVAI--------------------------------TM 148
Query: 353 AHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHL 412
AHE GHN G HD C +M T FSS C
Sbjct: 149 AHEMGHNLGMNHDRGFCTCGF-----NKCVMSTRRTKP----AYQFSS-------CSVRE 192
Query: 413 FTHQSFWSRGSSILGLAYIASPRPYSI-GGGILGLA---YVGSPRRNSKCCYHSILSELF 468
R IL I G + + GSP C ++ +L
Sbjct: 193 HQRYLLRDRPQCILNKPLSTDIVSPPICGNYFVEVGEECDCGSPADCQSACCNATTCKLQ 252
Query: 469 PVLLYSDKNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCL- 527
CC+ CKF +CR A+ C+ CTG S+ CP + C
Sbjct: 253 HEAQCDS--EECCEKCKFKGARAECRAAK-DDCDLPELCTGQSAECPTDVFQRNGLPCQN 309
Query: 528 ERGKCRGGKCIPFCE 542
+G C GKC
Sbjct: 310 NQGYCYNGKCPIMTN 324
Score = 55.0 bits (132), Expect = 5e-08
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 27/197 (13%)
Query: 581 HYNMIRDKWDVRNLLETFSSH-----VDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPR 635
+ N I + DVR L F + A L T F + +GLAYI S
Sbjct: 69 NINEINVQSDVRATLNLFGEWREKKLLPRKRNDNAQLLTGIDF---NGTPVGLAYIGSIC 125
Query: 636 PYSIGGSIHENLKYFDTLHSSHISHTIVKR-GVQESNH-----------PFNKIKEVTFK 683
++ ++ + + ++H + G+ + K
Sbjct: 126 NPKTSAAVVQDYSSRTRMVAITMAHEMGHNLGMNHDRGFCTCGFNKCVMSTRRTKPAYQF 185
Query: 684 TLGNLRSIRKVLEAKSGKCFSEPEES-------FCGNLRVEGDEECDAGLLGTEDNDSCC 736
+ ++R ++ L +C S CGN VE EECD G + C
Sbjct: 186 SSCSVREHQRYLLRDRPQCILNKPLSTDIVSPPICGNYFVEVGEECDCGSPADCQSACCN 245
Query: 737 DKVCKLRRNEGAGDEEC 753
CKL+ EEC
Sbjct: 246 ATTCKLQHEAQCDSEEC 262
Score = 37.7 bits (87), Expect = 0.015
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 77 HTRSKRQVDPAYEYKPTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
+T + + A +Y +V D Y+ + + +I+ ++ IY
Sbjct: 2 NTPEQDRYLQAKKY------IEFYVVVDNIMYRHY-KRDQPVIKRKVYEMINTMNMIYRR 54
Query: 137 TIWH 140
+H
Sbjct: 55 LNFH 58
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 100 bits (250), Expect = 1e-22
Identities = 68/358 (18%), Positives = 102/358 (28%), Gaps = 76/358 (21%)
Query: 191 LIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRD--KWDV 248
+ R++ I N + + + + S+ ++ + + KW
Sbjct: 39 VRTRMYDIVNVITPIYHRM-----NIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRA 93
Query: 249 RNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTL 308
+LL S K A L T + F G GL Y+G GIC Y
Sbjct: 94 TDLL-------SRKSHDNAQLLTGINFNGPTAGLGYLG--------GICNTMY------- 131
Query: 309 YLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDM 368
S+ ++ A + AHE GHN G +HD D
Sbjct: 132 ------------------------SAGIVQDHSKIHHLVA-IAMAHEMGHNLGMDHDKDT 166
Query: 369 PECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGL 428
C +M + FS C + IL
Sbjct: 167 CTC-----GTRPCVMAGALSC---EASFLFSD-------CSQKDHREFLIKNMPQCILKK 211
Query: 429 AYIASPRPYSIGGGILGLA----YVGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNC 484
++ G GSPR C + +L CC C
Sbjct: 212 PLKTDVVSPAVCGNYFVEVGEECDCGSPRTCRDPCCDATTCKLRQG--AQCAEGLCCDQC 269
Query: 485 KFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLERGKCRGGKCIPFCE 542
+F G +CR A+ C+ CTG S+ C + G C GKC +
Sbjct: 270 RFKGAGTECRAAKD-ECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMAD 326
Score = 52.3 bits (125), Expect = 4e-07
Identities = 43/240 (17%), Positives = 74/240 (30%), Gaps = 46/240 (19%)
Query: 558 GMGFVIKKIVVHSDATRVRQGEAHYNMIRD--KWDVRNLLETFSSHVDGTNFCLAHLFTH 615
+ + + + S+ ++ + + KW +LL S A L T
Sbjct: 58 NIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRATDLLSRKSHDN-------AQLLTG 110
Query: 616 QSFWSRGSSILGLAYIASPRPYSIGGSIHENLKYFDTLHSSHISHTIVKR-GVQESNH-- 672
+F GL Y+ I ++ L + ++H + G+
Sbjct: 111 INF---NGPTAGLGYLGGICNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTC 167
Query: 673 --------PFNKIKEVTFKTLGN--LRSIRKVLEAKSGKCFSEP-------EESFCGNLR 715
+ + + R+ L +C + + CGN
Sbjct: 168 TCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYF 227
Query: 716 VEGDEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRR 775
VE EECD G T + C CKLR +C GL CCD+ C+ +
Sbjct: 228 VEVGEECDCGSPRTCRDPCCDATTCKLR-----QGAQCAEGL--------CCDQ-CRFKG 273
Score = 37.7 bits (87), Expect = 0.014
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 88 YEYKPTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDG 147
Y K L LVADY Y + G + T R++ I N
Sbjct: 9 QRYLNAKKYVKLFLVADYIMYLKYGRNLTAV--------RTRMYDIVNVITPIYHRMNIH 60
Query: 148 YRGMGFVI----KKIVVHSDATRV 167
+G I KI+V S A
Sbjct: 61 VALVGLEIWSNTDKIIVQSSADVT 84
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 100 bits (250), Expect = 2e-22
Identities = 70/379 (18%), Positives = 110/379 (29%), Gaps = 95/379 (25%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRDKWDV 248
+++ ++I+N + + + D ++I
Sbjct: 37 YEIVNSANEIFNPL------------NIHVTLIGVEFWCDR----------DLINVTSSA 74
Query: 249 RNLLEVFSRE-----YSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFK 303
L F + K A LFTD++F+ LG+ ++ G+C
Sbjct: 75 DETLNSFGEWRASDLMTRKSHDNALLFTDMRFDLNTLGITFLA--------GMCQAYR-- 124
Query: 304 NGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSE 363
+ G+ + + + ++ AHE HN G
Sbjct: 125 -------------------------SVGIVQEQGN-----RNFKTAVIMAHELSHNLGMY 154
Query: 364 HDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGS 423
HD C+ S +M S D +K FS+ C + +Q + +R
Sbjct: 155 HDGKNCICN-----DSSCVM---SPVLSDQPSKLFSN-------C--SIHDYQRYLTRYK 197
Query: 424 SILGLAYIASPRPYSI---GGGILGLA---YVGSPRRNSKCCYHSILSELFPVLLYSDKN 477
S G I GSP C + +L P N
Sbjct: 198 PKCIFNPPLRKDIVSPPVCGNEIWEEGEECDCGSPANCQNPCCDAATCKLKPGAECG--N 255
Query: 478 SPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCL-ERGKCRGGK 536
CC CK G CR A+ C+ CTG S+ CP + C RG C G
Sbjct: 256 GLCCYQCKIKTAGTVCRRAR-DECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGD 314
Query: 537 CIPFCETQNQQSCMCDVNG 555
C Q N
Sbjct: 315 CPIMRN-QCISLFGSRANV 332
Score = 50.0 bits (119), Expect = 2e-06
Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 28/198 (14%)
Query: 581 HYNMIRDKWDVRNLLETFS-----SHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIAS-- 633
++I L +F + + A LFT F + LG+ ++A
Sbjct: 64 DRDLINVTSSADETLNSFGEWRASDLMTRKSHDNALLFTDMRF---DLNTLGITFLAGMC 120
Query: 634 PRPYSIGGSIHENLKYFDT--------LHSSHISHTIVKRGVQESNHPFNKIKEVTFKTL 685
S+G + + F T H+ + H +S+ + + L
Sbjct: 121 QAYRSVGIVQEQGNRNFKTAVIMAHELSHNLGMYHDGKNCICNDSSCVMSPVLSDQPSKL 180
Query: 686 ---GNLRSIRKVLEAKSGKCFSEP-------EESFCGNLRVEGDEECDAGLLGTEDNDSC 735
++ ++ L KC P CGN E EECD G N C
Sbjct: 181 FSNCSIHDYQRYLTRYKPKCIFNPPLRKDIVSPPVCGNEIWEEGEECDCGSPANCQNPCC 240
Query: 736 CDKVCKLRRNEGAGDEEC 753
CKL+ G+ C
Sbjct: 241 DAATCKLKPGAECGNGLC 258
Score = 35.8 bits (82), Expect = 0.060
Identities = 5/39 (12%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDT 137
L+++ D+ ++ + T + +++ ++I+N
Sbjct: 15 LVIIVDHSMAKKCNST---ATNTKIYEIVNSANEIFNPL 50
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 86.4 bits (213), Expect = 9e-18
Identities = 67/328 (20%), Positives = 95/328 (28%), Gaps = 74/328 (22%)
Query: 240 NMIRDKWDVRNLLEVFS---REYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGI 296
N + L F R++ + HLF+ +FE G AY+G GI
Sbjct: 65 NKFAISENPLITLREFMKYRRDFIKEKSDAVHLFSGSQFESSRSGAAYIG--------GI 116
Query: 297 CTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEF 356
C+ N +G+ T + A
Sbjct: 117 CSLLK-------------------------------GGGVNEFGK---TDLMAVTLAQSL 142
Query: 357 GHNWGSEHDPDMP---ECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLF 413
HN G D EC + G + T K F+ C +
Sbjct: 143 AHNIGIISDKRKLASGECKCEDTWSGCIMGDTGYY-----LPKKFTQ-------CNIEEY 190
Query: 414 THQSFWSRGSSILGLAYIASPRPYSIGGGILGLA------YVGSPRRNSKCCYHSILSEL 467
H S G + L P G G + C L
Sbjct: 191 -HDFLNSGGGACLFNKPSKLLDPPECGNGFIETGEECDCGTPAECVLEGAECCKKC--TL 247
Query: 468 FPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCL 527
SD CC+ CKF +G CR+A C+ C+G+SS C P+ D C
Sbjct: 248 TQDSQCSDG--LCCKKCKFQPMGTVCREAV-NDCDIRETCSGNSSQCAPNIHKMDGYSCD 304
Query: 528 E-RGKCRGGKCIPFCETQNQQSCMCDVN 554
+G C GG+C + Q + V
Sbjct: 305 GVQGICFGGRC-KTRDRQCKYIWGQKVT 331
Score = 35.9 bits (82), Expect = 0.058
Identities = 38/197 (19%), Positives = 48/197 (24%), Gaps = 29/197 (14%)
Query: 583 NMIRDKWDVRNLLETFS---SHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIAS--PRPY 637
N + L F HLF+ F SS G AYI
Sbjct: 65 NKFAISENPLITLREFMKYRRDFIKEKSDAVHLFSGSQF---ESSRSGAAYIGGICSLLK 121
Query: 638 SIGGSIHENLKYFDTL------HSSHISHTIVKRGVQESNHPFNKIKEVTFKTLGNL--- 688
G + H+ I K E + T L
Sbjct: 122 GGGVNEFGKTDLMAVTLAQSLAHNIGIISDKRKLASGECKCEDTWSGCIMGDTGYYLPKK 181
Query: 689 ------RSIRKVLEAKSGKCFSEPEESF-----CGNLRVEGDEECDAGLLGT-EDNDSCC 736
L + G C CGN +E EECD G + C
Sbjct: 182 FTQCNIEEYHDFLNSGGGACLFNKPSKLLDPPECGNGFIETGEECDCGTPAECVLEGAEC 241
Query: 737 DKVCKLRRNEGAGDEEC 753
K C L ++ D C
Sbjct: 242 CKKCTLTQDSQCSDGLC 258
Score = 32.5 bits (73), Expect = 0.63
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIW 139
L++V D+ +++ + T Y S+++ IY D +
Sbjct: 11 LMIVNDHLMFKKH-RLSVVHTNTYAKSVVNMADLIYKDQLK 50
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 70.1 bits (171), Expect = 7e-14
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 474 SDKNSPCCQ-NCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLE-RGK 531
S PCC +C F + KCRD + C +E C G +++CP S P + T C
Sbjct: 50 SPSQGPCCTAHCAFKSKTEKCRDD--SDCAKEGICNGITALCPASDPKPNFTDCNRHTQV 107
Query: 532 CRGGKCI-PFCETQNQQSCMC 551
C G+C CE + C C
Sbjct: 108 CINGQCAGSICEKHGLEECTC 128
Score = 50.4 bits (120), Expect = 4e-07
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 707 EESFCGNLRVEGDEECDAGLLGTEDNDSCCD------KVCKLRRNEGAGDEECDAGLLGT 760
+ CGN VE EECD G ++ C D K CKL+ G +C
Sbjct: 2 GQPICGNGMVEQGEECDCGYSDQCKDECCYDANQPEGKKCKLK--PGK---QCSPS---- 52
Query: 761 EDNDSCCDKVCKLR 774
CC C +
Sbjct: 53 --QGPCCTAHCAFK 64
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 70.0 bits (171), Expect = 9e-13
Identities = 53/273 (19%), Positives = 75/273 (27%), Gaps = 75/273 (27%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T + F G +G AY+G +C
Sbjct: 98 AQLLTGIDFNGNTVGRAYIG--------SLCKTNE------------------------- 124
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
S + R I+ A HE GHN G HD C P G +M
Sbjct: 125 ------SVAIVQDYNRRISLVA-STITHELGHNLGIHHDKASCICIP-----GPCIMLKK 172
Query: 387 SVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGGILGL 446
+ FSS C + R IL I G
Sbjct: 173 RTAP----AFQFSS-------CSIREYREYLLRDRPQCILNKPLSTDIVSPPICGNYFVE 221
Query: 447 AYVGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQ-NCKFMAVGMKCRDAQYATCEQES 505
+ + C +++ C C+F +CR A+ C+
Sbjct: 222 VGEECDCGSPQAC----------------QSACCNAATCQFKGAETECRVAK-DDCDLPE 264
Query: 506 RCTGSSSVCPPSAPMSDNTGCLE-RGKCRGGKC 537
CTG S+ CP + + C + C G C
Sbjct: 265 LCTGQSAECPTDSLQRNGHPCQNNQSYCYNGTC 297
Score = 31.9 bits (72), Expect = 0.90
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 25/165 (15%)
Query: 610 AHLFTHQSFWSRGSSILGLAYIASPRPYSIGGSIHENLKYFDTLHSSHISHTI------- 662
A L T F + +G AYI S + +I ++ +L +S I+H +
Sbjct: 98 AQLLTGIDFNG---NTVGRAYIGSLCKTNESVAIVQDYNRRISLVASTITHELGHNLGIH 154
Query: 663 ---VKRGVQESNHPFNKIKEVTFKTLGN--LRSIRKVLEAKSGKCFSEPEE-------SF 710
K + + +R R+ L +C
Sbjct: 155 HDKASCICIPGPCIMLKKRTAPAFQFSSCSIREYREYLLRDRPQCILNKPLSTDIVSPPI 214
Query: 711 CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEECDA 755
CGN VE EECD G + C C+ + GA E A
Sbjct: 215 CGNYFVEVGEECDCGSPQACQSACCNAATCQFK---GAETECRVA 256
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 68.9 bits (168), Expect = 2e-12
Identities = 60/294 (20%), Positives = 80/294 (27%), Gaps = 65/294 (22%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T + ++GLAYVG +C P+ Y L +
Sbjct: 97 AQLLTAIDL-DRVIGLAYVG--------SMCHPKRSTGIIQDYSEINLVVAV-------- 139
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
+ AHE GHN G HD C A +
Sbjct: 140 ------------------------IMAHEMGHNLGINHDSGYCSCGDYACIMRPEISP-- 173
Query: 387 SVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGGILGL 446
+ FS+ C IL + G L
Sbjct: 174 ------EPSTFFSN-------CSYFECWDFIMNHNPECILNEPLGTDIISPPVCGNELLE 220
Query: 447 AY----VGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYATCE 502
G+P C + +L CC+ CKF G +CR + + C+
Sbjct: 221 VGEECDCGTPENCQNECCDAATCKLKSGSQCGH--GDCCEQCKFSKSGTECRASM-SECD 277
Query: 503 QESRCTGSSSVCPPSAPMSDNTGCL-ERGKCRGGKCIPFCETQNQQSCMCDVNG 555
CTG SS CP + CL G C G C Q DV
Sbjct: 278 PAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYH-QCYDLFGADVYE 330
Score = 45.4 bits (107), Expect = 6e-05
Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 24/164 (14%)
Query: 610 AHLFTHQSFWSRGSSILGLAYIASPRPYSIGGSIHENLKYFDTLHSSHISHTIVKRGVQE 669
A L T ++GLAY+ S I ++ + + + ++H +
Sbjct: 97 AQLLTAIDL----DRVIGLAYVGSMCHPKRSTGIIQDYSEINLVVAVIMAHEMGHNLGIN 152
Query: 670 SNHPFNK-----------IKEVTFKTLGN--LRSIRKVLEAKSGKCFSEPEES------- 709
+ + I N + + +C
Sbjct: 153 HDSGYCSCGDYACIMRPEISPEPSTFFSNCSYFECWDFIMNHNPECILNEPLGTDIISPP 212
Query: 710 FCGNLRVEGDEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEEC 753
CGN +E EECD G N+ C CKL+ G +C
Sbjct: 213 VCGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDC 256
Score = 30.8 bits (69), Expect = 2.4
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 749 GDEECDAGLLGTEDNDSCCDKVCKLRRNEGATKGTSSFGKRRNKTHTLCR---------- 798
EECD G N+ C CKL+ G + +K+ T CR
Sbjct: 221 VGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTECRASMSECDPAE 280
Query: 799 RCGKSSYHIQKKKCAQCGYPCPRLRHY 825
C S + G PC Y
Sbjct: 281 HCTGQSSECPADVFHKNGQPCLDNYGY 307
Score = 28.8 bits (64), Expect = 7.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDT 137
L+LV D + + + +++ V++IY
Sbjct: 12 LVLVVDKAMVTKN-NGDLDKIKTRMYEIVNTVNEIYRYM 49
>1ro3_A Disintegrin echistatin; no regular secondary structure, cell
adhesion; NMR {Echis carinatus} SCOP: g.20.1.1 PDB:
2ech_A
Length = 49
Score = 52.2 bits (126), Expect = 4e-09
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNT 524
PCC+NCKF+ G C+ A+ + + C G + CP + T
Sbjct: 6 PCCRNCKFLKEGTICKRAR--GDDMDDYCNGKTCDCPRNPHKGPAT 49
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom, toxin;
1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1 PDB:
1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A 1l3x_A
3c05_A 3c05_B
Length = 70
Score = 45.8 bits (109), Expect = 1e-06
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
CC C+F CR A+ + RCTG S+ CP
Sbjct: 31 LCCDQCRFKKKRTICRIARGDFP--DDRCTGQSADCPR 66
Score = 32.3 bits (74), Expect = 0.075
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 720 EECDAGLLGTEDNDSCCDKVCKLRRN----EGAGDEECDAGLLGT---EDNDSCCDKVC 771
EECD G + N C CKLR +G ++C T D C
Sbjct: 2 EECDCG---SPSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIARGDFPDDRC 57
Score = 27.7 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 751 EECDAGLLGTEDNDSCCDKVCKLRRN 776
EECD G + N C CKLR
Sbjct: 2 EECDCG---SPSNPCCDAATCKLRPG 24
>1tej_A Disintegrin chain A; cryatal structure, heterodimer, protein
binding; 1.90A {Echis carinatus} SCOP: g.20.1.1 PDB:
1rmr_A 1tej_B 1z1x_A
Length = 64
Score = 44.8 bits (106), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 477 NSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
+ PCC NCKF+ G C+ A+ + CTG ++ CP
Sbjct: 22 SGPCCNNCKFLNSGTICQRAR-GDGNHD-YCTGITTDCPR 59
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 47.3 bits (113), Expect = 5e-06
Identities = 28/134 (20%), Positives = 38/134 (28%), Gaps = 48/134 (35%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T + F+G +G AY GG+C P +
Sbjct: 95 AQLLTAVVFDGNTIGRAY--------TGGMCDPRH------------------------- 121
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
S + A + AHE GHN G HD C S +M +
Sbjct: 122 ------SVGVVRDHSKNNLWVA-VTMAHELGHNLGIHHDTGSCSCG-----AKSCIMASV 169
Query: 387 SVSGYDVNNKTFSS 400
+ FS
Sbjct: 170 LSKV---LSYEFSD 180
Score = 33.1 bits (76), Expect = 0.21
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L +VAD+ + + SN T + +++ V+ Y
Sbjct: 10 LAVVADHGIFTKY-NSNLNTIRTRVHEMLNTVNGFYRS 46
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 47.0 bits (112), Expect = 8e-06
Identities = 31/144 (21%), Positives = 43/144 (29%), Gaps = 44/144 (30%)
Query: 240 NMIRDKWDVRNLLEVF----SREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGG 295
+ R D L F ++ + A L T F+G +GLA V G
Sbjct: 64 DRSRVTQDANATLWAFLQWRRGLWAQRPHDSAQLLTGRAFQGATVGLAP--------VEG 115
Query: 296 ICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHE 355
+C E S + + A + AHE
Sbjct: 116 MCRAES-------------------------------SGGVSTDHSELPIGAAATM-AHE 143
Query: 356 FGHNWGSEHDPDMPECSPSASQGG 379
GH+ G HDPD +A GG
Sbjct: 144 IGHSLGLSHDPDGCCVEAAAESGG 167
Score = 34.7 bits (80), Expect = 0.091
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L +VAD+ + N + T L+ + + V ++
Sbjct: 11 LYIVADHTLFLTR-HRNLQHTKQRLLEVANYVDQLLRT 47
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 46.2 bits (110), Expect = 1e-05
Identities = 30/134 (22%), Positives = 36/134 (26%), Gaps = 48/134 (35%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T F+G +GLAY V +C P+
Sbjct: 92 AQLLTATDFDGATIGLAY--------VASMCNPKR------------------------- 118
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
S V A + AHE HN G HD C G S +M
Sbjct: 119 ------SVGVIQDHSSVNRLVAITL-AHEMAHNLGVSHDEGSCSCG-----GKSCIMSPS 166
Query: 387 SVSGYDVNNKTFSS 400
K FS
Sbjct: 167 ISDET---IKYFSD 177
Score = 32.7 bits (75), Expect = 0.30
Identities = 4/38 (10%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
+++V D+ ++ ++ + ++ +I+ + + Y+
Sbjct: 7 IVIVVDHSMVKKY-NGDSDSIKAWVYEMINTITESYSY 43
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 45/135 (33%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
L T + F G +G A V +C+ + ++
Sbjct: 93 VQLITGVDFTGTTVGFARVS--------AMCSHS----------SGAVNQ---------D 125
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECS-PSASQGGSYLMYT 385
+ + + + AHE GHN G +HD ++ C + G +M
Sbjct: 126 HSKNPVGVA--------------CTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAG 171
Query: 386 YSVSGYDVNNKTFSS 400
+ FS
Sbjct: 172 SI---GSSFPRMFSD 183
Score = 30.0 bits (68), Expect = 2.4
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L +V D +Q + GS + ++ +++ V K+Y
Sbjct: 9 LYVVVDNAEFQML-GSEAAVR-HRVLEVVNHVDKLYQK 44
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 44.6 bits (106), Expect = 3e-05
Identities = 25/134 (18%), Positives = 35/134 (26%), Gaps = 48/134 (35%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T ++ + LGLA +G +C P+
Sbjct: 95 AQLLTAIELDEETLGLAP--------LGTMCDPKL------------------------- 121
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
S + + AHE GHN G EHD +M
Sbjct: 122 ------SIGIVQDHSPINLLMG-VTMAHELGHNLGMEHDGKDCLRG-----ASLCIMRPG 169
Query: 387 SVSGYDVNNKTFSS 400
G + FS
Sbjct: 170 LTKG---RSYEFSD 180
Score = 33.1 bits (76), Expect = 0.26
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L++VAD+R + + S+ T + +++ ++ Y
Sbjct: 10 LVVVADHRVFMKY-NSDLNTIRTRVHEIVNFINGFYRS 46
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 44.6 bits (106), Expect = 4e-05
Identities = 27/134 (20%), Positives = 39/134 (29%), Gaps = 50/134 (37%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T F G +GLAY + +C +Y + GL
Sbjct: 94 AQLLTATNFNGNTVGLAY--------LKTMCNSKY---------SVGLIQ-------DHS 129
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
+ ++ AHE GHN G HD C + +M
Sbjct: 130 AIPLLMAV----------------TMAHELGHNLGMNHDGAGCSC-------ATCIM--- 163
Query: 387 SVSGYDVNNKTFSS 400
+ K+FS
Sbjct: 164 APVLSSGPAKSFSD 177
Score = 33.8 bits (78), Expect = 0.11
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L L+ D+ Y + SN+ L + ++ ++ IY+
Sbjct: 9 LFLIVDHSMYAKY-NSNSSKITTTLKARVNIMNAIYSS 45
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 44.7 bits (106), Expect = 4e-05
Identities = 33/160 (20%), Positives = 45/160 (28%), Gaps = 52/160 (32%)
Query: 245 KWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEG----GILGLAYVGSPRRNSVGGICTPE 300
KW ++ E + D A LFT G LG+A VG IC+PE
Sbjct: 80 KWQHQHNQLGDDHEEHY-D--AAILFTREDLCGHHSCDTLGMADVG--------TICSPE 128
Query: 301 YFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNW 360
+ + +T+ AHE GH
Sbjct: 129 R---------SCAVIEDDGLHAAFTV--------------------------AHEIGHLL 153
Query: 361 GSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSS 400
G HD S LM S+ +K +S
Sbjct: 154 GLSHDDSKFCEETFGSTEDKRLM--SSILTSIDASKPWSK 191
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 43.9 bits (104), Expect = 6e-05
Identities = 31/134 (23%), Positives = 44/134 (32%), Gaps = 49/134 (36%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L T + F G ++GLA+ VG +C +Y ++G+ + L
Sbjct: 94 AQLQTAVDFRGAVVGLAF--------VGTMCNAKY---------SAGIIQ---DFSAIPL 133
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
+ V AHE GHN G HD D C +M
Sbjct: 134 LMAV--------------------VMAHELGHNLGMLHD-DGYSC-----DCDVCIMAPS 167
Query: 387 SVSGYDVNNKTFSS 400
S K FS+
Sbjct: 168 LSSDP---TKVFSN 178
Score = 33.8 bits (78), Expect = 0.14
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L LV D + + + K + L + ++ + I+
Sbjct: 9 LQLVVDSSMFAKY-NGDAKKIVTVLDTRVNIMKSIFKP 45
>2w9o_A Jerdostatin, short disintegrin jerdostatin; venom, toxin, cell
adhesion, blood coagulation; NMR {Trimeresurus jerdonii}
PDB: 2w9u_A
Length = 46
Score = 39.8 bits (93), Expect = 1e-04
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
PCC+ CK G C CTG S CP
Sbjct: 8 PCCRQCKLKPAGTTCWRTS----VSSHYCTGRSCECPS 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 1e-04
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 93/281 (33%)
Query: 123 LISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMI---RD 179
+S+I + T W D + + +I+ + + R+ ++ +
Sbjct: 329 RLSIIAESIRDGLAT-W-DNWKHVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSVFPP 383
Query: 180 KWDVR---NLLEI--------------------SLIDR--------VHKIYNDTIWHDRS 208
LL + SL+++ + IY + +
Sbjct: 384 --SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 209 EQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEVFSREYS------H- 261
E +R IV HYN I +D +L+ + +Y H
Sbjct: 442 EYALHR-------SIV------------DHYN-IPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 262 -------KDFCLAHLFTDLKFEGGILG--LAYVGSPRRNSVGGICTPEYFKNGYTLYLNS 312
+ +F D +F L + + + S + T + K Y Y+
Sbjct: 482 KNIEHPERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKF-YKPYI-- 534
Query: 313 GLSSSQYFKN--GYTLYLNSGLSSSRNHYGQRVITREADLV 351
N Y +N+ L + ++ DL+
Sbjct: 535 -------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 39.1 bits (90), Expect = 0.006
Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 79/239 (33%)
Query: 4 SIHTPEETYHIEPSWRHLP---------HLGNQSMVAYRASDVKLSWDHAHDKPASPCGY 54
S H P + W + L S+V + + +S
Sbjct: 384 SAHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPS-------- 430
Query: 55 VKEEFNTTDFDLDME-EDDPDMPHTRSKRQVDPAYEYKPTKTRCP---LLLVAD-YRFYQ 109
+L ++ E++ + H + VD Y KT + D Y FY
Sbjct: 431 -------IYLELKVKLENEYAL-H---RSIVD---HYNIPKTFDSDDLIPPYLDQY-FYS 475
Query: 110 ---------EMGGSNTKTTINYL-ISLIDRVHKI-YNDTIWHDRSE-----QD--GYRGM 151
E T + +L +++ KI ++ T W+ Q Y+
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKP- 532
Query: 152 GFVIKKIVVHSDATR--------VRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDT 202
++ R + + E + +I K+ +LL I+L+ I+ +
Sbjct: 533 -YICDN---DPKYERLVNAILDFLPKIEEN--LICSKY--TDLLRIALMAEDEAIFEEA 583
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 44.1 bits (104), Expect = 1e-04
Identities = 53/304 (17%), Positives = 80/304 (26%), Gaps = 99/304 (32%)
Query: 245 KWDVRNLLEVFSREYSHKDFCLAHLFTDLKFE----GGILGLAYVGSPRRNSVGGICTPE 300
W ++ + D A LFT LG+A VG +C P
Sbjct: 82 NWQKQHNPPSDRDAEHY-D--TAILFTRQDLCGSQTCDTLGMADVG--------TVCDPS 130
Query: 301 YFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNW 360
+ + + +T AHE GH +
Sbjct: 131 R---------SCSVIEDDGLQAAFTT--------------------------AHELGHVF 155
Query: 361 GSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFS--SHVDGTNFCLAHLFTHQSF 418
HD S + S++M S+ +++ +S S T+F
Sbjct: 156 NMPHDDAKQCASLNGVNQDSHMM--ASMLSNLDHSQPWSPCSAYMITSFLDNG------- 206
Query: 419 WSRGSSILGLAYIASPRPYSIGGGILGLAYVGSPRRNSKCCYHSILSELFPVLLYSDKNS 478
G ++ P + G D N
Sbjct: 207 --HGECLMDKPQNPIQLPGDLPGTSY------------------------------DANR 234
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQE--SRCTGSSSVCPPSA-PMSDNTGCLERGKCRGG 535
C F C DA +TC + +G VC P +D T C E C G
Sbjct: 235 QCQ--FTFGEDSKHCPDAA-STCSTLWCTGTSGGVLVCQTKHFPWADGTSCGEGKWCING 291
Query: 536 KCIP 539
KC+
Sbjct: 292 KCVN 295
Score = 33.3 bits (76), Expect = 0.29
Identities = 9/96 (9%), Positives = 19/96 (19%), Gaps = 19/96 (19%)
Query: 689 RSIRKVLEAKSGKC-FSEPEESF-----CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKL 742
I L+ G+C +P+ + + +C + C
Sbjct: 197 YMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCST 256
Query: 743 RRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRRNEG 778
C + +G
Sbjct: 257 LW--------C-----TGTSGGVLVCQTKHFPWADG 279
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 41.9 bits (99), Expect = 3e-04
Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 49/134 (36%)
Query: 267 AHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTL 326
A L TD F +G AY VG +C +Y
Sbjct: 97 AQLLTDTNFARNTIGWAY--------VGRMCDEKY------------------------- 123
Query: 327 YLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTY 386
S + + A + HE GHN G EHD D +C + + +M
Sbjct: 124 ------SVAVVKDHSSKVFMVA-VTMTHELGHNLGMEHD-DKDKC-----KCDTCIM--- 167
Query: 387 SVSGYDVNNKTFSS 400
S D +K FS
Sbjct: 168 SAVISDKQSKLFSD 181
Score = 33.8 bits (78), Expect = 0.12
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYND 136
L +V D+ Y + SN K + ++ ++++
Sbjct: 12 LAIVVDHGMYTKY-SSNFKKIRKRVHQMVSNINEMCRP 48
Score = 28.1 bits (63), Expect = 8.8
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 20/61 (32%)
Query: 589 WDVRNLLETFSSHVDGT--NFCL--------------AHLFTHQSFWSRGSSILGLAYIA 632
W ++ + + T F A L T +F + +G AY+
Sbjct: 61 WSEKDFITV-QADAPTTAGLFGDWRERVLLKKKNHDHAQLLTDTNFA---RNTIGWAYVG 116
Query: 633 S 633
Sbjct: 117 R 117
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina
obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Length = 41
Score = 37.6 bits (87), Expect = 5e-04
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
PCC+ CK G C CTG S CP
Sbjct: 5 PCCRQCKLKPAGTTCWKTSL----TSHYCTGKSCDCPL 38
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 40.7 bits (95), Expect = 0.002
Identities = 45/284 (15%), Positives = 73/284 (25%), Gaps = 87/284 (30%)
Query: 266 LAHLFTDLKFE----GGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFK 321
A LFT LG+A VG +C P + + +
Sbjct: 100 TAILFTRQDLCGVSTCDTLGMADVG--------TVCDPAR---------SCAIVEDDGLQ 142
Query: 322 NGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQG-GS 380
+ +T AH+ GH + HD P S +
Sbjct: 143 SAFTA--------------------------AHQLGHVFNMLHDNSKPCISLNGPLSTSR 176
Query: 381 YLMYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIG 440
++M V + + +S C A T + L P +
Sbjct: 177 HVMA--PVMAHVDPEEPWSP-------CSARFITD-FLDNGYGHCL---LDKPEAPLHLP 223
Query: 441 GGILGLAYVGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQYAT 500
G Y R + + P ++C + C
Sbjct: 224 VTFPGKDY--DADRQCQLTFG-----------------PDSRHCPQLPPP--CAAL---W 259
Query: 501 CEQESRCTGSSSVCPPSAPMSDNTGCLERGKCRGGKCIPFCETQ 544
C G + +P +D T C C GG+C+ + Q
Sbjct: 260 CSGH--LNGHAMCQTKHSPWADGTPCGPAQACMGGRCLHMDQLQ 301
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 40.4 bits (94), Expect = 0.002
Identities = 47/307 (15%), Positives = 72/307 (23%), Gaps = 70/307 (22%)
Query: 267 AHLFTDLKFEG----GILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKN 322
A LFT G LG+A VG IC+PE + +
Sbjct: 101 AILFTREDLCGHHSCDTLGMADVG--------TICSPER---------SCAVIEDDGLHA 143
Query: 323 GYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYL 382
+T+ AHE GH G HD S L
Sbjct: 144 AFTV--------------------------AHEIGHLLGLSHDDSKFCEETFGSTEDKRL 177
Query: 383 MYTYSVSGYDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGGG 442
M + S + + T F G+ +L L P + G
Sbjct: 178 MSSILTSIDASKPWSKCTSATITEFL---------DDGHGNCLLDLPRKQILGPEELPGQ 228
Query: 443 ILGL---AYVGSPRRNSKCCYHSILSELFPVLLYSDKNSPCCQNCKFMAVGMKCRDAQY- 498
+ S C + + L + C G C +
Sbjct: 229 TYDATQQCNLTFGPEYSVCPGMDVCARL-WCAVVRQGQMVCLTKKLPAVEGTPCGKGRIC 287
Query: 499 -------ATCEQESRCTGSSSVCPPSAPMSDNTGCLERGKCRGGKC-IPFCETQNQQSCM 550
T ++ + + + + C + C P + C
Sbjct: 288 LQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRY-CT 346
Query: 551 CDVNGYR 557
YR
Sbjct: 347 GKRAIYR 353
Score = 31.6 bits (71), Expect = 1.1
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 689 RSIRKVLEAKSGKC-FSEPEESF-----CGNLRVEGDEECDAGLLGTEDNDSCCDKVCKL 742
+I + L+ G C P + + ++C+ G E + VC
Sbjct: 197 ATITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQCNLT-FGPEYSVCPGMDVCAR 255
Query: 743 RRNEGAGDEEC 753
+
Sbjct: 256 LWCAVVRQGQM 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.006
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 47/164 (28%)
Query: 571 DATRVRQGEAHYNMIRDKWDV--------RNLLETFSSHV---------DGTNFCLAHLF 613
DA R + + V L E F+ + D A L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 614 THQSFWSRGSSILGLAYIASPRPYSIGGSIHENLK----YFDT--LHSSHISHTIVKRGV 667
F L Y++S S G + L F+ L + I H + + +
Sbjct: 62 GK--F---------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLL 109
Query: 668 QESNHPFNKIKEVTFKTLGNLRSIRKVLEAK--SGKCFSEPEES 709
QE++ K KE+ I+ + A+ + + F + S
Sbjct: 110 QENDTTLVKTKEL----------IKNYITARIMAKRPFDKKSNS 143
Score = 36.6 bits (84), Expect = 0.043
Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 92/250 (36%)
Query: 577 QGEAHYNMIRDKWD----VRNLLETFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIA 632
QG M D + +++ A ++ G SIL I
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNR------------ADNHFKDTY---GFSILD---IV 1665
Query: 633 SPRPYSI--------GGSIHENLKY----FDTLHSSHISHTIVKRGVQE--SNHPFNKIK 678
P ++ G I EN Y F+T+ + + + + E +++ F K
Sbjct: 1666 INNPVNLTIHFGGEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 679 EVTFKT---------LGNLRSIRKVLEAKSGKCFSEPEES-FCG-NLRVEGDEE-----C 722
+ T + ++ + L++K P ++ F G +L G E
Sbjct: 1724 GLLSATQFTQPALTLME--KAAFEDLKSK----GLIPADATFAGHSL---G--EYAALAS 1772
Query: 723 DAGLLGTEDNDSCCDKVCKL---R---------RNEGAGDEECDAGL--------LGTED 762
A ++ E + ++ R R+E + E
Sbjct: 1773 LADVMSIES-------LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 763 NDSCCDKVCK 772
++V K
Sbjct: 1826 LQYVVERVGK 1835
Score = 35.0 bits (80), Expect = 0.12
Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 56/191 (29%)
Query: 138 IWH--DRSEQDGYRGMGFVIKKIV--------VHSDATRVRQGEAHYN-MIRDKWDVRNL 186
+W+ D +D Y GF I IV +H + ++ +Y+ MI + L
Sbjct: 1645 VWNRADNHFKDTY---GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 187 LEISLIDRVHKIYNDTIW-HDRSEQDGYRGMGFVIKKIVVHSDATRVRQ------GEAHY 239
+ +++ + ++ AT+ Q +A +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLL-----------------SATQFTQPALTLMEKAAF 1744
Query: 240 NMIRDKWDVRNLLEVF---SR-EYSHKDFCLAHL-----FTD----LKFEGGILGLAYVG 286
++ + F S EY+ LA L + + G + +A
Sbjct: 1745 EDLK-SKGLIPADATFAGHSLGEYA----ALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 287 SPRRNSVGGIC 297
S G+
Sbjct: 1800 DELGRSNYGMI 1810
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 34.1 bits (77), Expect = 0.22
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Query: 719 DEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRRNEG 778
EC +D C C+ +G E C +D C+ ++
Sbjct: 209 HSECLGNCSQPDDPTKC--VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKC 266
Query: 779 ATKGTSSFGKRRNKTHTLCRRCGKSSYHIQK-KKCAQCGYPCPR 821
+ + C C C PCP+
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPK 310
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A
{Bacteroides fragilis}
Length = 397
Score = 33.4 bits (75), Expect = 0.31
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 29/118 (24%)
Query: 303 KNGYTLYLNSGLSSSQYFKNGYTL--------------YLNSGL---SSSRNHYGQRVIT 345
+G+T L + + Y Y L +LNS +S G
Sbjct: 280 LDGFTASLKANPKAEGYDDQIYFLIRWGTWDNNILGISWLNSYNVNTASDFKASGMSTTQ 339
Query: 346 READLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYT-YSVSGYDVNNKTFSSHV 402
V AHE GH G+ H D P+ LMY+ Y+ + ++ K
Sbjct: 340 LMYPGVMAHELGHILGANHADD-PKD----------LMYSKYTGYLFHLSEKNMDIIA 386
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 31.2 bits (70), Expect = 0.44
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 785 SFGKRRNKTHTLCRRCGKSSYHIQKK-----KCAQCGYP---CPRLRHYNWSVKAQRRKT 836
+ R NK + G KK KC CG LR ++ ++ KT
Sbjct: 12 PYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKT 71
Query: 837 T--GTGRMRHLKIVRRRFSC 854
G R V+ R
Sbjct: 72 VSRAYGGSRCANCVKERIIR 91
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 31.9 bits (73), Expect = 0.78
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 278 GILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSS 335
GILG+ Y + G T + N G N Y+LYLNS + +
Sbjct: 116 GILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIR----TNAYSLYLNSPSAET 169
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A
{Escherichia coli}
Length = 869
Score = 31.7 bits (71), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 353 AHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTF 398
+H+ GHN+G H D + S S + S G+D + K F
Sbjct: 416 SHDVGHNYGLGHYVDGFKGSVHRSAENN-----NSTWGWDGDKKRF 456
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus
microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E*
5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Length = 325
Score = 30.3 bits (69), Expect = 2.4
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 270 FTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLN 329
F +G +LGL + +V G+ TP N ++ GL S F +YL
Sbjct: 114 FASGPNDG-LLGLGF---DTITTVRGVKTP--MDN----LISQGLISRPIF----GVYLG 159
Query: 330 SGLSSS 335
+
Sbjct: 160 KAKNGG 165
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 30.3 bits (69), Expect = 2.6
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 23/93 (24%)
Query: 369 PECSPSASQGGSYLMYTYSVSGYDVNNKTFS------SHVDGT----NFCLAHL-FTHQS 417
E S G S Y S +G +++ T+S S G + + + Q+
Sbjct: 44 TELPASQQSGHSV--YNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQA 101
Query: 418 FWSRGSSILGLAYIASPRPYSIGG--GILGLAY 448
A S + G+LGLA+
Sbjct: 102 V--------QAAQQISAQFQQDTNNDGLLGLAF 126
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 3.1
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 776 NEGATKGTSSFGKRRNKTHTLCRRCGKSSYHIQKKK------CAQCGY 817
E K G N T C C I ++ CA CG
Sbjct: 4 RESIDKRAGRRGPNLNIVLT-CPECKVYPPKIVERFSEGDVVCALCGL 50
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 55
Score = 27.1 bits (60), Expect = 3.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 796 LCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVKAQRRKTTG 838
C RCGK ++I+ CP N+ + +K+TG
Sbjct: 9 TCFRCGKPGHYIKN---------CPTNGDKNFESGPRIKKSTG 42
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 28.4 bits (63), Expect = 3.5
Identities = 3/62 (4%), Positives = 5/62 (8%), Gaps = 10/62 (16%)
Query: 785 SFGKRRNKTHTLCRRCGKSSYHIQKK-----KCAQC-----GYPCPRLRHYNWSVKAQRR 834
K K+ A+
Sbjct: 12 IKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIA 71
Query: 835 KT 836
Sbjct: 72 CN 73
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 30.2 bits (67), Expect = 3.5
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEH 364
+ NS ++ +N +YG++ +T HE GH G H
Sbjct: 130 AFAYLPNSSRKGESWYLINKDYQVNKTPGE--GNYGRQTLT--------HEIGHTLGLSH 179
Query: 365 DPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSSHVDGTN 406
D + G Y +V D + S+ N
Sbjct: 180 PGD-------YNAGNGNPTYRDAVYAEDTRAYSVMSYWSEKN 214
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of
basic residues, glycoprotein, protease, secreted; HET:
STA; 2.50A {Candida albicans}
Length = 342
Score = 29.7 bits (67), Expect = 3.8
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 278 GILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSS 335
GILG+ + + +L N G+ K Y+LYLNS +S+
Sbjct: 122 GILGIGF----QSGEATEFDYDNLP---ISL-RNQGIIG----KAAYSLYLNSAEAST 167
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 29.9 bits (68), Expect = 3.9
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 23/92 (25%)
Query: 370 ECSPSASQGGSYLMYTYSVSGYDVNNKTFS------SHVDGT----NFCLAHL-FTHQSF 418
+ S G Y YT S ++ T+S S G + + + Q+
Sbjct: 45 QTPSSERSGHDY--YTPGSSAQKIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAV 102
Query: 419 WSRGSSILGLAYIASPRPYSIGG--GILGLAY 448
A S G+LGLA+
Sbjct: 103 --------ESAEKVSSEFTQDTANDGLLGLAF 126
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.8 bits (66), Expect = 4.4
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 3/134 (2%)
Query: 428 LAYIASPRPYSIGGGILGLAYVGSPRRNSKCCYHSILSELFPVLLYSDKNS--PCCQNCK 485
L + +I G + + + + IL + + +K+ C C
Sbjct: 101 LKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICP 160
Query: 486 FMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLERGKCRGGKCIPFCETQN 545
A G A + RC S + + GC G C +C+ C +
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPD 220
Query: 546 QQS-CMCDVNGYRG 558
+ C+ N Y
Sbjct: 221 DPTKCVACRNFYLD 234
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
3lw5_A*
Length = 755
Score = 29.8 bits (66), Expect = 5.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 237 AHYNMIRDKWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYV 285
A + M+RD N V R H+D ++HL F G YV
Sbjct: 413 AIF-MVRDYDPAMNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYV 460
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 28.0 bits (62), Expect = 5.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 794 HTLCRRCGKSSYHIQKKKCAQCGYPC 819
H CR C + C C YPC
Sbjct: 43 HLFCRICILRCLKVMGSYCPSCRYPC 68
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1;
zinc-binding protein, cytoplasm, metal-binding, nucleus,
metal binding protein; NMR {Homo sapiens}
Length = 79
Score = 27.1 bits (60), Expect = 6.1
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 789 RRNKTHTLCRRCGKSS---YHIQKKKCAQCG 816
+ LC C S +HI KC C
Sbjct: 32 QNMTVDILCNDCNGRSTVQFHILGMKCKICE 62
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 29.2 bits (66), Expect = 6.5
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 23/92 (25%)
Query: 370 ECSPSASQGGSYLMYTYSVSGYDVNNKTFS------SHVDGT----NFCLAHL-FTHQSF 418
E S G YT S S ++ ++ S G + + Q+
Sbjct: 44 ELPSSEQTGHDL--YTPSSSATKLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAV 101
Query: 419 WSRGSSILGLAYIASPRPYSIGG--GILGLAY 448
A S G+LGLA+
Sbjct: 102 --------EAASKISSEFVQDTANDGLLGLAF 125
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic
resolution, succinimide, anisotropic refinement; HET:
SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB:
1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A*
2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A*
1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Length = 329
Score = 28.8 bits (65), Expect = 7.6
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 269 LFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKN 304
D +G +LGLA+ N+V +F N
Sbjct: 115 FTEDSTIDG-LLGLAF---STLNTVSPTQQKTFFDN 146
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Length = 241
Score = 28.5 bits (64), Expect = 7.9
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 270 FTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLN 329
F KF+G ILG+AY R SV + F N + L F + YL+
Sbjct: 21 FIAAKFDG-ILGMAY----PRISVNNVLPV--FDN----LMQQKLVDQNIF----SFYLS 65
Query: 330 SGLSSS 335
+
Sbjct: 66 RDPDAQ 71
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 28.7 bits (63), Expect = 8.3
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 505 SRCTGSSSVCPPSAPMSDNTGCLERGKCRGGKCIPFCETQNQQSCMCDVNG 555
+ SS P+ D T C C G+C + + + V+G
Sbjct: 55 TDPLDQSSCSRLLVPLLDGTECGVEKWCSKGRCRSLV----ELTPIAAVHG 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,362,579
Number of extensions: 813891
Number of successful extensions: 2125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2031
Number of HSP's successfully gapped: 195
Length of query: 857
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 755
Effective length of database: 3,853,851
Effective search space: 2909657505
Effective search space used: 2909657505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)