RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14093
(857 letters)
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 123 bits (308), Expect = 5e-32
Identities = 101/222 (45%), Positives = 128/222 (57%), Gaps = 31/222 (13%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNM------- 241
I LIDRV IY +T W + G++G G I++I + V+ GE HYNM
Sbjct: 33 IELIDRVDDIYRNTAW----DNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNE 88
Query: 242 IRDKWDVRNLLEVFS--REYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTP 299
+D WDV+ LLE FS CLAHLFT F+ G LGLAYVGSPR NS GG+C
Sbjct: 89 EKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPK 148
Query: 300 EYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHN 359
Y+ +YLNSGL+S++N YG+ ++T+EADLVT HE GHN
Sbjct: 149 AYYSPV----------------GKKNIYLNSGLTSTKN-YGKTILTKEADLVTTHELGHN 191
Query: 360 WGSEHDPDMP-ECSPSASQGGSYLMYTYSVSGYDVNNKTFSS 400
+G+EHDPD EC+P+ QGG Y+MY +VSG NNK FS
Sbjct: 192 FGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQ 233
Score = 77.2 bits (189), Expect = 3e-16
Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 92 PTKTRCPLLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGM 151
P K C LL+VAD+RFY+ MG TT NYLI LIDRV IY +T W + G++G
Sbjct: 1 PMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAW----DNAGFKGY 56
Query: 152 GFVIKKIVVHSDATRVRQGEAHYNM-------IRDKWDVRNLLEISLIDRVHKIYNDTIW 204
G I++I + V+ GE HYNM +D WDV+ LLE D + +
Sbjct: 57 GIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLA 116
Query: 205 H 205
H
Sbjct: 117 H 117
Score = 46.0 bits (108), Expect = 8e-06
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 555 GYRGMGFVIKKIVVHSDATRVRQGEAHYNM-------IRDKWDVRNLLETFS--SHVDGT 605
G++G G I++I + V+ GE HYNM +D WDV+ LLE FS + +
Sbjct: 52 GFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEAS 111
Query: 606 NFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 641
CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 112 KVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 144
Score = 28.3 bits (62), Expect = 3.5
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 391 YDVNNKTFSSHVDGTNFCLAHLFTHQSFWSRGSSILGLAYIASPRPYSIGG 441
+ +F + + CLAHLFT+Q F LGLAY+ SPR S GG
Sbjct: 97 MLLEQFSFDIAEEASKVCLAHLFTYQDF---DMGTLGLAYVGSPRANSHGG 144
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 56
Score = 98.7 bits (246), Expect = 6e-26
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 781 KGTSSFGKRRNKTHTLCRRCGKSSYHIQKKKCAQCGY-PCPRLRHYNWSVKA 831
GT S GK+ THT CRRCG+ SYH +KK C+ CG+ + R Y W KA
Sbjct: 3 AGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 54
>d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis
carinatus) [TaxId: 40353]}
Length = 49
Score = 53.2 bits (128), Expect = 6e-10
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNT 524
PCC+NCKF+ G C+ A+ + + C G + CP + T
Sbjct: 6 PCCRNCKFLKEGTICKRAR--GDDMDDYCNGKTCDCPRNPHKGPAT 49
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 57.5 bits (138), Expect = 7e-10
Identities = 39/244 (15%), Positives = 72/244 (29%), Gaps = 69/244 (28%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
++ + +D T + R+ + L + + + V ++
Sbjct: 6 ELYIVADHTLFL----TRH--RNLQHTKQRL-LEVANYVDQLLRTLDIQ----------- 47
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEVFSREYSHKDFCLAHLFTDLKFE 276
+ + V ++ R R + + L+ ++ + A L T F+
Sbjct: 48 -VALTGLEVWTERDRSRVTQDANATLW------AFLQWRRGLWAQRPHDSAQLLTGRAFQ 100
Query: 277 GGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSR 336
G +GLA V G+C E S
Sbjct: 101 GATVGLAP--------VEGMCRAES--------------------------------SGG 120
Query: 337 NHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNK 396
+ A AHE GH+ G HDPD +A GG +M + + +
Sbjct: 121 VSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAESGG-CVM---AAATGHPFPR 176
Query: 397 TFSS 400
FS+
Sbjct: 177 VFSA 180
Score = 40.5 bits (94), Expect = 3e-04
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 22/123 (17%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKI 158
L +VAD+ + N + T L+ + + V ++ + +
Sbjct: 7 LYIVADHTLFLTRH-RNLQHTKQRLLEVANYVDQLLRTLDIQ------------VALTGL 53
Query: 159 VVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDT--IWHDRSEQDGYRGM 216
V ++ + +D + +D+ + R+ Q G+
Sbjct: 54 EVWTE-------RDRSRVTQDANATLWAFLQWRRGLWAQRPHDSAQLLTGRAFQGATVGL 106
Query: 217 GFV 219
V
Sbjct: 107 APV 109
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 48.6 bits (115), Expect = 6e-07
Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 76/246 (30%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
++ V +D YN + +R + +++ V+ Y H
Sbjct: 9 ELAVVADHGIFT----KYN--SNLNTIRTRV-HEMLNTVNGFYRSVDVH----------- 50
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNMIRD--KWDVRNLLEVFSREYSHKDFCLAHLFTDLK 274
+ + V S ++ + ++ +W R+LL A L T +
Sbjct: 51 -APLANLEVWSKQDLIKVQKDSSKTLKSFGEWRERDLL-------PRISHDHAQLLTAVV 102
Query: 275 FEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSS 334
F+G +G AY GG+C P + S
Sbjct: 103 FDGNTIGRAY--------TGGMCDPRH--------------------------------S 122
Query: 335 SRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVN 394
+ AHE GHN G +HD C S +M +
Sbjct: 123 VGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCG-----AKSCIMASVLSKV---L 174
Query: 395 NKTFSS 400
+ FS
Sbjct: 175 SYEFSD 180
Score = 40.2 bits (93), Expect = 4e-04
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKI 158
L +VAD+ + + SN T + +++ V+ Y H + +
Sbjct: 10 LAVVADHGIFTKYN-SNLNTIRTRVHEMLNTVNGFYRSVDVH------------APLANL 56
Query: 159 VVHSDATRVRQGEAHYNMIRD--KWDVRNLL 187
V S ++ + ++ +W R+LL
Sbjct: 57 EVWSKQDLIKVQKDSSKTLKSFGEWRERDLL 87
>d1teja_ g.20.1.1 (A:) Schistatin {Saw-scaled viper (Echis
carinatus), different isoforms [TaxId: 40353]}
Length = 62
Score = 45.2 bits (107), Expect = 6e-07
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 477 NSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
+ PCC NCKF+ G C+ A+ CTG ++ CP
Sbjct: 21 SGPCCNNCKFLNSGTICQRAR--GDGNHDYCTGITTDCPR 58
>d1mpza_ g.20.1.1 (A:) Obtustatin {Blunt-nosed viper (Vipera
lebetina obtusa) [TaxId: 209528]}
Length = 41
Score = 44.3 bits (105), Expect = 8e-07
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPP 516
PCC+ CK G C CTG S CP
Sbjct: 5 PCCRQCKLKPAGTTCWKT----SLTSHYCTGKSCDCPL 38
>d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake
(Trimeresurus flavoviridis) [TaxId: 88087]}
Length = 68
Score = 44.4 bits (105), Expect = 1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 479 PCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCP 515
CC C+F CR A+ + RCTG S+ CP
Sbjct: 31 LCCDQCRFKKKRTICRIAR--GDFPDDRCTGQSADCP 65
Score = 29.0 bits (65), Expect = 0.33
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 720 EECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEEC 753
EECD G + N C CKLR D C
Sbjct: 2 EECDCG---SPSNPCCDAATCKLRPGAQCADGLC 32
Score = 29.0 bits (65), Expect = 0.39
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 751 EECDAGLLGTEDNDSCCDKVCKLRRNEGATKGTSSFGKRRNKTHTLCRR 799
EECD G + N C CKLR G R K T+CR
Sbjct: 2 EECDCG---SPSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRI 47
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake
(Agkistrodon acutus), acutolysin A [TaxId: 36307]}
Length = 197
Score = 46.7 bits (110), Expect = 2e-06
Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 76/246 (30%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
+IV+ D + V+ YN D ++ + +I+ + + Y+
Sbjct: 6 EIVIVVDHSMVK----KYN--GDSDSIKAWV-YEMINTITESYSYLKID----------- 47
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNMIRD--KWDVRNLLEVFSREYSHKDFCLAHLFTDLK 274
+ + + S + + N ++ +W ++ A L T
Sbjct: 48 -ISLSGLEIWSGKDLIDVEASAGNTLKSFGEWRAKD-------LIHRISHDNAQLLTATD 99
Query: 275 FEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSS 334
F+G +GLAYV +C P+ S + L +
Sbjct: 100 FDGATIGLAYVA--------SMCNPKR-------------SVGVIQDHSSVNRLVA---- 134
Query: 335 SRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVN 394
+ AHE HN G HD C G S +M
Sbjct: 135 ---------------ITLAHEMAHNLGVSHDEGSCSCG-----GKSCIMSPSISDE---T 171
Query: 395 NKTFSS 400
K FS
Sbjct: 172 IKYFSD 177
Score = 36.7 bits (84), Expect = 0.005
Identities = 13/125 (10%), Positives = 43/125 (34%), Gaps = 25/125 (20%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKI 158
+++V D+ ++ ++ + ++ +I+ + + Y+ + +
Sbjct: 7 IVIVVDHSMVKKY-NGDSDSIKAWVYEMINTITESYSYLKID------------ISLSGL 53
Query: 159 VVHSDATRVRQGEAHYNMIRD--KWDVRNLLEISLIDRVHKIYNDTIWHD--RSEQDGYR 214
+ S + + N ++ +W + D +H+I +D
Sbjct: 54 EIWSGKDLIDVEASAGNTLKSFGEWRAK--------DLIHRISHDNAQLLTATDFDGATI 105
Query: 215 GMGFV 219
G+ +V
Sbjct: 106 GLAYV 110
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
diamonback rattlesnake (Crotalus atrox), atrolysin C
[TaxId: 8730]}
Length = 200
Score = 46.7 bits (110), Expect = 3e-06
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 76/246 (30%)
Query: 157 KIVVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
++VV +D YN D +R + +++ ++ Y H
Sbjct: 7 ELVVVADHRVFM----KYN--SDLNTIRTRV-HEIVNFINGFYRSLNIH----------- 48
Query: 217 GFVIKKIVVHSDATRVRQGEAHYNMIRD--KWDVRNLLEVFSREYSHKDFCLAHLFTDLK 274
+ + + S+ ++ A + + +W +L + K A L T ++
Sbjct: 49 -VSLTDLEIWSNEDQINIQSASSDTLNAFAEWRETDL-------LNRKSHDNAQLLTAIE 100
Query: 275 FEGGILGLAYVGSPRRNSVGGICTPEYFKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSS 334
+ LGLA +G +C P+ + L
Sbjct: 101 LDEETLGLAPLG--------TMCDPKLSIGIVQDHSPINLLMG----------------- 135
Query: 335 SRNHYGQRVITREADLVTAHEFGHNWGSEHDPDMPECSPSASQGGSYLMYTYSVSGYDVN 394
+ AHE GHN G EHD +M G
Sbjct: 136 ---------------VTMAHELGHNLGMEHDGKDCLRG-----ASLCIMRPGLTKG---R 172
Query: 395 NKTFSS 400
+ FS
Sbjct: 173 SYEFSD 178
Score = 38.2 bits (88), Expect = 0.002
Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKI 158
L++VAD+R + + S+ T + +++ ++ Y H + +
Sbjct: 8 LVVVADHRVFMKYN-SDLNTIRTRVHEIVNFINGFYRSLNIH------------VSLTDL 54
Query: 159 VVHSDATRVRQGEAHYNMIRD--KWDVRNLLEISLIDRVHKIYNDTIWHDRSEQDGYRGM 216
+ S+ ++ A + + +W +LL D + + G+
Sbjct: 55 EIWSNEDQINIQSASSDTLNAFAEWRETDLLNRKSHDNAQ------LLTAIELDEETLGL 108
Query: 217 GFV 219
+
Sbjct: 109 APL 111
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 42.9 bits (100), Expect = 5e-05
Identities = 33/159 (20%), Positives = 45/159 (28%), Gaps = 55/159 (34%)
Query: 247 DVRNLLEVFSR-----EYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEY 301
RN L++F+ A L T F G +GLAY+ +C +Y
Sbjct: 69 SSRNTLKLFASWRETDLLKRTSNDNAQLLTATNFNGNTVGLAYLK--------TMCNSKY 120
Query: 302 FKNGYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWG 361
S + A + AHE GHN G
Sbjct: 121 -------------------------------SVGLIQDHSAIPLLMA-VTMAHELGHNLG 148
Query: 362 SEHDPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSS 400
HD C + +M SG K+FS
Sbjct: 149 MNHDGAGCSC-------ATCIMAPVLSSG---PAKSFSD 177
Score = 36.7 bits (84), Expect = 0.006
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 21/123 (17%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKI 158
L L+ D+ Y + SN+ L + ++ ++ IY+ + + I
Sbjct: 9 LFLIVDHSMYAKY-NSNSSKITTTLKARVNIMNAIYSSL------------NLVITLSGI 55
Query: 159 VVHSDATRVRQGEAHYNMIRDKWDVRNLLEISLIDRVHKIYNDTIWHD--RSEQDGYRGM 216
+ S A + + N ++ D + + ND + G+
Sbjct: 56 EMWSAADLITVQSSSRNT------LKLFASWRETDLLKRTSNDNAQLLTATNFNGNTVGL 109
Query: 217 GFV 219
++
Sbjct: 110 AYL 112
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu
(Trimeresurus mucrosquamatus), atrolysin E [TaxId:
103944]}
Length = 201
Score = 39.8 bits (92), Expect = 5e-04
Identities = 36/214 (16%), Positives = 61/214 (28%), Gaps = 70/214 (32%)
Query: 189 ISLIDRVHKIYNDTIWHDRSEQDGYRGMGFVIKKIVVHSDATRVRQGEAHYNMIRD--KW 246
++ ++++ + + V S+ + W
Sbjct: 34 HQMVSNINEMCRPLNIA------------ITLALLDVWSEKDFITVQADAPTTAGLFGDW 81
Query: 247 DVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGSPRRNSVGGICTPEYFKNGY 306
R L K+ A L TD F +G AYVG +C +Y
Sbjct: 82 RERVL-------LKKKNHDHAQLLTDTNFARNTIGWAYVG--------RMCDEKY----- 121
Query: 307 TLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEHDP 366
S + + +++ + + HE GHN G EHD
Sbjct: 122 --------SVAVVKDHSSKVFMVA-------------------VTMTHELGHNLGMEHD- 153
Query: 367 DMPECSPSASQGGSYLMYTYSVSGYDVNNKTFSS 400
D +C + +M S D +K FS
Sbjct: 154 DKDKCKCD-----TCIM---SAVISDKQSKLFSD 179
Score = 35.5 bits (81), Expect = 0.013
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 99 LLLVADYRFYQEMGGSNTKTTINYLISLIDRVHKIYNDTIWHD 141
L +V D+ Y + SN K + ++ ++++
Sbjct: 10 LAIVVDHGMYTKY-SSNFKKIRKRVHQMVSNINEMCRPLNIAI 51
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 31.0 bits (70), Expect = 0.12
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 794 HTLCRRCGKSSYHIQKKKCAQCGYPC 819
H CR C + C C YPC
Sbjct: 43 HLFCRICILRCLKVMGSYCPSCRYPC 68
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 155
Score = 30.0 bits (66), Expect = 0.75
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Query: 719 DEECDAGLLGTEDNDSCCDKVCKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRRNEG 778
EC +D C C+ +G E C +D C+ ++
Sbjct: 53 HSECLGNCSQPDDPTKCVA--CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKC 110
Query: 779 ATKGTSSFGKRRNKTHTLCRRCGKSSYH-IQKKKCAQCGYPCPR 821
+ + C C C PCP+
Sbjct: 111 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPK 154
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 56
Score = 26.7 bits (59), Expect = 2.1
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 788 KRRNKTHTLCRRCGKSSYHIQKKKCAQCGYPCPRLRHYNWSVK 830
++R +CR+CG + I+ KC +C RL+ K
Sbjct: 13 QQRVFLKKVCRKCG-ALNPIRATKCRRCHSTNLRLKKKELPTK 54
>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 27.5 bits (59), Expect = 4.1
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Query: 731 DNDSCCDKVCKLRRNEGAGDEECDAGLLGTEDNDSCCDKVCKLRRNEGATKGTSSFGKRR 790
C + G + C A + D + T +
Sbjct: 60 GPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLS 119
Query: 791 NKTHTLCRRCGKSSYHIQKK----KCAQCGYPCP 820
+ + C ++ + + +C +C PC
Sbjct: 120 TEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCA 153
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 27.7 bits (60), Expect = 4.5
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 22/95 (23%)
Query: 305 GYTLYLNSGLSSSQYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHEFGHNWGSEH 364
+ + G+ +F + L + + + LV HE GH G EH
Sbjct: 84 AHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLF----------LVAVHELGHALGLEH 133
Query: 365 DPDMPECSPSASQGGSYLMYTYSVSGYDVNNKTFS 399
D + +M + + +N
Sbjct: 134 SND-----------PTAIMAPFY-QYMETDNFKLP 156
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm
(Ancylostoma caninum) [TaxId: 29170]}
Length = 78
Score = 26.1 bits (57), Expect = 5.1
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 477 NSPCCQNCKFMAVGMKCRDAQYATCEQESRCTGSSSVCPPSAPMSDNTGCLERGKC 532
+ C + CK+ V + + C C VC + + C+ C
Sbjct: 12 SKECDKKCKYDGVEEEDDEEPNVPC-LVRVCH-QDCVCEEGFYRNKDDKCVSAEDC 65
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 26.0 bits (57), Expect = 8.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 240 NMIRDKWDVRNLLEVFSREYSHKDFCLAHLFTD 272
+ KW + +FSR Y ++ L +
Sbjct: 52 EGLHGKWLFTEIRSIFSRRYLLQNTALEIFMAN 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,359,210
Number of extensions: 166404
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 63
Length of query: 857
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 764
Effective length of database: 1,130,706
Effective search space: 863859384
Effective search space used: 863859384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)