BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14094
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core
pdb|1W63|S Chain S, Ap1 Clathrin Adaptor Core
pdb|1W63|T Chain T, Ap1 Clathrin Adaptor Core
pdb|1W63|U Chain U, Ap1 Clathrin Adaptor Core
pdb|1W63|W Chain W, Ap1 Clathrin Adaptor Core
pdb|1W63|X Chain X, Ap1 Clathrin Adaptor Core
Length = 158
Score = 244 bits (623), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 130/142 (91%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
M+FMLLFSRQGKLRLQKWY+A DK +KK+ REL+ +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
++Q+TSKK+VLKAI DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYAS 70
+ +++ +G++ + + Y D + + + I AR+ + + ++
Sbjct: 5 LFIYNHKGEVLISRVY--RDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN 62
Query: 71 LYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQ 130
++ +QN N + E +++ +++ YFG + E +I NF Y +LDE+L G Q
Sbjct: 63 IWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQ 122
Query: 131 ETSKKNVLKAIAAQ 144
S+ LK Q
Sbjct: 123 -NSETGALKTFITQ 135
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYAS 70
+ +++ +G++ + + Y D + + + I AR+ + + ++
Sbjct: 5 LFIYNHKGEVLISRVY--RDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN 62
Query: 71 LYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQ 130
++ +QN N + E +++ +++ YFG + E +I NF Y +LDE+L G Q
Sbjct: 63 IWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQ 122
Query: 131 ETSKKNVLKAIAAQ 144
S+ LK Q
Sbjct: 123 -NSETGALKTFITQ 135
>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|F Chain F, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 153
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 5 LLNMQFMLLFSRQGKLRLQKWYV-AHPDKLKKKITRELITTILARKPKMCSFLEWKDVKI 63
L ++ +L+ G K+Y +P ++K + I R + LE + +
Sbjct: 10 LYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEG--LTV 67
Query: 64 VYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDE 122
VYK LYF +NEL+ + +++ + L + +V + ++ N E + +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 123 LLLGGEIQETSKKNVLKAIA 142
++ GG I E+ + V+ +A
Sbjct: 128 IVDGGVILESDPQQVVHRVA 147
>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop
Length = 149
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 5 LLNMQFMLLFSRQGKLRLQKWYV-AHPDKLKKKITRELITTILARKPKMCSFLEWKDVKI 63
L ++ +L+ G K+Y +P ++K + I R + LE + +
Sbjct: 10 LYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEG--LTV 67
Query: 64 VYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDE 122
VYK LYF +NEL+ + +++ + L + +V + ++ N E + +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 123 LLLGGEIQETSKKNVLKAIA 142
++ GG I E+ + V+ +A
Sbjct: 128 IVDGGVILESDPQQVVHRVA 147
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 52 MCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIF 111
+ L V+ ++ ++ +LY ++N L +++ V++ +YF + E I
Sbjct: 46 LSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRD 105
Query: 112 NFEKAYFILDELLLGGEIQETSKK 135
NF Y +LDEL+ G Q T K
Sbjct: 106 NFVIIYELLDELMDFGYPQTTDSK 129
>pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|E Chain E, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 443
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 74 CCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE-LDIIFNFEKAYFILDELLLGGEIQET 132
C ++ D ++ + RY + +D + G+V LD+ E + L +++ I
Sbjct: 146 VCEVDMWDANMVKAAVFGRYPQTIDYFGGNVASMLDVPMKQEGVGYALRNIMV-NHIVAA 204
Query: 133 SKKNVLKAIAAQDLLQE 149
++KN ++A+ LQ+
Sbjct: 205 TRKNTMQAVCLAATLQQ 221
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 528
Score = 29.3 bits (64), Expect = 0.83, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 50 PKMCSFLE---WKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHR-------YVELLDK 99
PKM S+LE W DV + ++Y + + LE IH EL D
Sbjct: 210 PKMESYLEARLWNDVFVFAQKYIGI-----PNGTIKATVLLETIHASFEMDEILYELKDH 264
Query: 100 YFGSVC-ELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKA 140
G C D IF+F KA+ +E LL Q T ++A
Sbjct: 265 SAGLNCGRWDYIFSFLKAFRNHNEFLLPDRAQVTMTAPFMRA 306
>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|B Chain B, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|C Chain C, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|D Chain D, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|E Chain E, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|F Chain F, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
Length = 286
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 101 FGSVCEL----DIIFNFEKAYFILDELLLG 126
FG CEL DII+ EKA F E+L+G
Sbjct: 135 FGGGCELAMMCDIIYAGEKAQFAQPEILIG 164
>pdb|2RCI|A Chain A, High-Resolution Crystal Structure Of Activated Cyt2ba
Monomer From Bacillus Thuringiensis Subsp. Israelensis
Length = 204
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 80 NDNELLTLEI--IHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
N NE+ +E I + + L + + G++ L + FNFEKA I + L G
Sbjct: 9 NFNEIFYVEPQYIAQAIRLTNTFQGAIDPLTLNFNFEKALQIANGLPNAG 58
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 79 QNDNELLTLEIIHRYVELLDKYFGSVCELDII-FNFEKAYFILDE 122
++ N++ TLE +Y+E L+ F ++C L+I+ + EK F+L +
Sbjct: 383 RSPNKVYTLEP-KQYLEPLENIFSALCMLNIVPIDLEKNTFVLGD 426
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQD 145
+ IH Y+ LD F E+ YF E L+G +E +KK V + I D
Sbjct: 198 MHFIHNYI------------LDSFFYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSD 244
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 79 QNDNELLTLEIIHRYVELLDKYFGSVCELDII-FNFEKAYFILDELLL 125
++ N++ TLE +Y+E L+ F ++C L+I+ + EK F+L + +
Sbjct: 264 RSPNKVYTLEP-KQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFM 310
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 69 ASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIF--NFEKAYFILDELLLG 126
A+ F + ++ L EI+H + ++K+ G+ E +F F++ IL E L+
Sbjct: 601 ANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVGAQSEQKNLFLVIFQRFIMILTEHLVR 660
Query: 127 GEIQETS 133
E TS
Sbjct: 661 CETDGTS 667
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 25.8 bits (55), Expect = 9.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 73 FCCAIEQNDNELLTLEIIHRYVELLDKYFGSV 104
F C IE N+ LTL+ + LDK+F V
Sbjct: 481 FLCPIEDNNGITLTLDEARWFCIELDKFFQKV 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,239,209
Number of Sequences: 62578
Number of extensions: 165617
Number of successful extensions: 487
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 20
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)