BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14094
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 258 bits (659), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 131/142 (92%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
MQFMLLFSRQGKLRLQKWYV DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
E+QETSKKNVLKAI DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 258 bits (659), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 131/142 (92%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
MQFMLLFSRQGKLRLQKWYV DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
E+QETSKKNVLKAI DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 258 bits (659), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 131/142 (92%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
MQFMLLFSRQGKLRLQKWYV DK KKKITREL+ T+LARKPKMCSFLEW+D+KIVYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE LLGG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
E+QETSKKNVLKAI DLLQE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 130/142 (91%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
M+FMLLFSRQGKLRLQKWY+A DK +KK+ REL+ +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
++Q+TSKK+VLKAI DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 130/142 (91%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
M+FMLLFSRQGKLRLQKWY+A DK +KK+ REL+ +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
++Q+TSKK+VLKAI DLLQE
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQE 143
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 130/142 (91%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
M+FMLLFSRQGKLRLQKWY+A DK +KK+ REL+ +LARKPKMCSFLEW+D+K+VYKR
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE L+GG
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
++Q+TSKK+VLKAI DLLQE
Sbjct: 121 DVQDTSKKSVLKAIEQADLLQE 142
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 124/142 (87%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+LLFSRQGKLRLQKWY PDK +KKITR++I T+L+R + SF++WK++K+VYKR
Sbjct: 2 IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNELLTLEI+HRYVELLDKYFG+VCELDIIFNFEKAYFILDE ++GG
Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
EIQETSKK +KAI D+LQE
Sbjct: 122 EIQETSKKTAVKAIEDSDMLQE 143
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 124/142 (87%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+LLFSRQGKLRLQKWY+ PDK +KKITRE++ IL+R + SF++WK++K+VYKR
Sbjct: 2 IHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFCCAIE DNELLTLEI+HRYVELLDKYFG+VCELDIIFNFEKAYFILDE ++GG
Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
EIQETSKK +KAI D+LQE
Sbjct: 122 EIQETSKKIAVKAIEDSDMLQE 143
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 112/142 (78%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+LL SRQGK+RL KWY + K + K+ REL IL R PK+C+F+EW+ K+VYKR
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFC I+Q DNEL LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDELL+ G
Sbjct: 62 YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
E+QE+SKK V + I+AQD L E
Sbjct: 122 ELQESSKKTVARIISAQDQLVE 143
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 112/142 (78%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+LL SRQGK+RL KWY + K + K+ REL IL R PK+C+F+EW+ K+VYKR
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YASLYFC I++ DNEL LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDELL+ G
Sbjct: 62 YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
E+QE+SKK V + I+AQD L E
Sbjct: 122 ELQESSKKTVARIISAQDQLVE 143
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 116/144 (80%)
Query: 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVY 65
++++F LL SRQGK+RL KW+ K + KI R++ + ++ RKPKMC+F+E+K KIVY
Sbjct: 1 MSIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVY 60
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
+RYASL+F C IEQ+DNEL+ LE+IH++VE LDKYFG+VCELD+IFNFEKAY++++ELLL
Sbjct: 61 RRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLL 120
Query: 126 GGEIQETSKKNVLKAIAAQDLLQE 149
GE+QE+SK NVL A+ A D E
Sbjct: 121 AGELQESSKTNVLSAVLAGDAESE 144
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 111/144 (77%)
Query: 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVY 65
+ F+LL SRQGK RL KWY +K K + TRE+ +L R PK+C+FLEWK+ KI++
Sbjct: 1 MTFHFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIF 60
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
KRYASLYF ++ DNEL+ LEIIH +VE+LD+YFG+VCELD+IFNF KAY+ILDEL++
Sbjct: 61 KRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIM 120
Query: 126 GGEIQETSKKNVLKAIAAQDLLQE 149
GE+QETSKK VL+ I+ QD L E
Sbjct: 121 AGELQETSKKTVLRLISQQDTLLE 144
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 5 LLNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIV 64
+ ++++LL SRQGK+RL+KWY A K KI ++L TILARKPKMC+ +E+ D K+V
Sbjct: 1 MTQLKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVV 60
Query: 65 YKRYASLYFCCAIEQN-DNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEL 123
YKRYASLYF + + DNELLTLEIIHR+VE +D YFG+VCELDIIFNF K Y IL+E+
Sbjct: 61 YKRYASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEM 120
Query: 124 LL-GGEIQETSKKNVLKAIAAQDLLQE 149
++ G I E+S+K VL + D ++
Sbjct: 121 IMCDGSIAESSRKEVLHHVTVMDTMES 147
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 98/134 (73%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+L F+RQ K+RL K+Y + K + TRE++ +L+R PK C+F++W++ IVY+R
Sbjct: 2 IHFLLCFNRQSKVRLSKFYSTYTPTEKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
+ASL+F + DNEL+TLE I R+V +LD FG++CELD+I+ F++AY +LDE LL G
Sbjct: 62 FASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRAYQVLDEFLLTG 121
Query: 128 EIQETSKKNVLKAI 141
+QE+S K +L+AI
Sbjct: 122 HLQESSSKEILRAI 135
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPK-MCSFLEWKDVKIVYK 66
+ F+L+ +RQGK RL KWYV + D+ K K+ E+ + R K +F+E+++ K+VY+
Sbjct: 2 LSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYR 61
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
RYA L+FC ++ NDNEL LE IH +VE+LD +FG+VCELD++FNF K Y ILDE+ L
Sbjct: 62 RYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLA 121
Query: 127 GEIQETSKKNVLKAIAAQDLLQ 148
GEI+ETSK+ VL + D L+
Sbjct: 122 GEIEETSKQVVLTRLEHLDKLE 143
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+L+ +R GK RL KWY+ D K+K+ E+ + R K +F+E+++ KI+Y+R
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 128 EIQETSKKNVLKAI 141
EI+ETS+ VLK +
Sbjct: 122 EIRETSQTKVLKQL 135
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPK-MCSFLEWKDVKIVYK 66
+ F+L+ +RQGK RL KWY D+ K K+ E+ + R K +F+E+++ KIVY+
Sbjct: 2 LSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYR 61
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
RYA L+FC ++ NDNEL LE IH +VE+LD +FG+VCELD++FNF K Y ILDE+ L
Sbjct: 62 RYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLA 121
Query: 127 GEIQETSKKNVLKAIAAQDLLQ 148
GEI+ETSK+ VL + D L+
Sbjct: 122 GEIEETSKQVVLTRLEHLDKLE 143
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKM-CSFLEWKDVKIVYK 66
+QF+L+ +R GK RL K+YV D K ++ + I R K +FLEW++ K+VY+
Sbjct: 2 IQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYR 61
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
RYA LYFC ++ DN+L LE+IH +VE+LD +FG+VCELD+IFNF K ILDE++LG
Sbjct: 62 RYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILG 121
Query: 127 GEIQETSKKNVLKAIAAQDLLQ 148
GEI E++KK+VL+ I A + L+
Sbjct: 122 GEIGESNKKSVLERIEALEKLE 143
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 96/140 (68%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
+ F+L+ +RQGK RL KWY + D K+K++ E+ + +R+ K +F+E++ +IVY+R
Sbjct: 2 IHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA L+F ++ DNEL LE IH +VE+LD YFG+VCELD++FNF K Y I+DE+ L G
Sbjct: 62 YAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAG 121
Query: 128 EIQETSKKNVLKAIAAQDLL 147
E+ E SK +L+ + D L
Sbjct: 122 ELMEPSKHVILQRMEFLDNL 141
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3
SV=1
Length = 145
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPK-MCSFLEWK-DVKIVY 65
+ F+L+ +RQGK RL KWY + D+ K K+ E+ + R K +F+E+K KIVY
Sbjct: 3 LSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVY 62
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
+RYA L+FC ++ DNEL LE IH +VE+LD++FG+VCELD++FNF K Y ILDE+ L
Sbjct: 63 RRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFL 122
Query: 126 GGEIQETSKKNVLKAIAAQDLLQ 148
GEI+ETSK+ VL + D L+
Sbjct: 123 AGEIEETSKQVVLTRLEHLDKLE 145
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3
SV=1
Length = 145
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCS-FLEWK-DVKIVY 65
+ F+L+ +RQGK RL KWY + D+ K K+ E+ + R K S F+E+K KIVY
Sbjct: 3 LSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVY 62
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
+RYA L+FC ++ DNEL LE IH +VE+LD++FG+VCELD++FNF K Y ILDE+ L
Sbjct: 63 RRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFL 122
Query: 126 GGEIQETSKKNVLKAIAAQDLLQ 148
GEI+ETSK+ VL + D L+
Sbjct: 123 AGEIEETSKQVVLTRLEHLDKLE 145
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 98/141 (69%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+LL +RQGK RL K+YV + K K+ E+ ++ R K +F+E++ K++Y+R
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDE +L G
Sbjct: 62 YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQ 148
E+QETSK+ +++ ++ + LQ
Sbjct: 122 ELQETSKRAIIERMSELEKLQ 142
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F+LL +RQGK RL K+YV D K K+ E+ ++ R PK +F+E++ K++Y+R
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKA--YFILDELLL 125
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDE +L
Sbjct: 62 YAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFIL 121
Query: 126 GGEIQETSKK 135
GE+QETSK+
Sbjct: 122 AGELQETSKR 131
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 99/140 (70%)
Query: 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVY 65
+ ++F+L+ ++QG+ RL ++Y + ++ + E++ LAR + CSF+E ++ KIVY
Sbjct: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
+RYASL+F ++ ++NEL LE IH VE +DK+FG+VCELDI+F+ EKA+F+L+E+++
Sbjct: 61 RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120
Query: 126 GGEIQETSKKNVLKAIAAQD 145
G I ETSK N+L I D
Sbjct: 121 NGCIVETSKANILSPIQLMD 140
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITR-ELITTILARKPKMCSFLEWKDVKIVYK 66
++F L+ ++QG+ RL K+Y H D K+ + E+I + L+R + CSF+E+KD K++Y+
Sbjct: 2 IKFFLMVNKQGQTRLSKYY-EHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE++L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 127 GEIQETSKKNVLKAIAAQDLLQE 149
G I ET++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 6 LNMQFMLLFSRQGKLRLQKWYVAH---PDKLKKKITRELITTILARKPKMCS-FLEWKD- 60
+ +QF+L F++QG +RL +W+ H P + + I ++ I +R K S F+E+ D
Sbjct: 1 MAVQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIA-QIYRLISSRDHKHQSNFVEFSDS 59
Query: 61 VKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 120
K++Y+RYA LYF ++ D+E + L IH +VE+LD +FG+VCELDI+FNF K Y I+
Sbjct: 60 TKLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIM 119
Query: 121 DELLLGGEIQETSKKNVLKAIAAQDLL 147
DE+ +GGEIQE SK +L+ ++ D L
Sbjct: 120 DEMFIGGEIQEISKDMLLERLSILDRL 146
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITR-ELITTILARKPKMCSFLEWKDVKIVYK 66
++F L+ ++QG+ RL K+Y H D K+ + E+ + L+R + CSF+E+KD K++Y+
Sbjct: 2 IKFFLMVNKQGQTRLSKYY-EHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
+YA+L+ + +NE+ E IH +VE+LD YF V ELDI+FN +K + ILDE++L
Sbjct: 61 QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 127 GEIQETSKKNVLKAIAAQDLLQE 149
G I ET++ +L + D L E
Sbjct: 121 GCIVETNRARILAPLLILDKLSE 143
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 90/142 (63%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
++F L+ ++QG+ RL K+Y + + E+I + L+R + CSF+E+KD K++Y++
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61
Query: 68 YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
YA+L+ + +NE+ E IH +VE+LD YF V ELDI+FN +K + ILDE++L G
Sbjct: 62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121
Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
I ET++ +L + D + +
Sbjct: 122 CIVETNRARILAPLLILDKMSD 143
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDV 61
+Q +L+F+ GK RL ++Y P++++++I RE +L R +C+FLE D
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 62 KIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 121
K++Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 122 ELLLGGEIQETSKKNVLKAIAAQDLLQ 148
E+++GG + ET+ ++ I AQ+ L+
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDV 61
+Q +L+F+ GK RL ++Y P++++++I RE +L R +C+FLE D
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 62 KIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 121
K++Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 122 ELLLGGEIQETSKKNVLKAIAAQDLLQ 148
E+++GG + ET+ ++ I AQ+ L+
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDV 61
+Q +L+F+ GK RL ++Y P++++++I RE +L R +C+FLE D
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 62 KIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 121
K++Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 122 ELLLGGEIQETSKKNVLKAIAAQDLLQ 148
E+++GG + ET+ ++ I AQ+ L+
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 8 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDV 61
+Q +L+F+ GK RL ++Y P++++++I RE +L R +C+FLE D
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 62 KIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 121
K++Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 122 ELLLGGEIQETSKKNVLKAIAAQDLLQ 148
E+++GG + ET+ ++ I AQ+ L+
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1
PE=3 SV=1
Length = 139
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Query: 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVY 65
+ +++ LL + +GK RL ++Y + P + + + E+I L+R CSF+E+KD K++Y
Sbjct: 1 MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
++YA+L+F ++ +NEL LE+IH YVE+LD F +V I+FN +KA+FILDE++
Sbjct: 61 RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 116
Query: 126 GGEIQETSKKNVLKAI 141
G+I E SK+++L+ +
Sbjct: 117 NGDIVEISKQHILEFV 132
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 88/136 (64%), Gaps = 5/136 (3%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLE-----WKDVKIVY 65
+++ + QGK RL K+Y P + ++++ R + + + +R + +FLE D ++VY
Sbjct: 5 VMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVY 64
Query: 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLL 125
K YA+LYF + ++NEL L++I VE LDK F +VCELDI+FN+ K + +LDE++
Sbjct: 65 KHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDEIVF 124
Query: 126 GGEIQETSKKNVLKAI 141
GG++ ETS V+KA+
Sbjct: 125 GGQVLETSSAEVMKAV 140
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 92/145 (63%), Gaps = 6/145 (4%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDVKIV 64
+L+F+ GK RL K+Y + + +++I RE + R +C+FLE D K++
Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64
Query: 65 YKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL 124
Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K + IL E++
Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124
Query: 125 LGGEIQETSKKNVLKAIAAQDLLQE 149
+GG + ET+ ++ I AQ+ L++
Sbjct: 125 MGGMVLETNMNEIVTQIDAQNKLEK 149
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 92/145 (63%), Gaps = 6/145 (4%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDVKIV 64
+L+F+ GK RL K+Y + + +++I RE + R +C+FLE D K++
Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64
Query: 65 YKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL 124
Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K + IL E++
Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124
Query: 125 LGGEIQETSKKNVLKAIAAQDLLQE 149
+GG + ET+ ++ I AQ+ L++
Sbjct: 125 MGGMVLETNMNEIVTQIDAQNKLEK 149
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 92/145 (63%), Gaps = 6/145 (4%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW------KDVKIV 64
+L+F+ GK RL K+Y + + +++I RE + R +C+FLE D K++
Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64
Query: 65 YKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELL 124
Y+ YA+LYF ++ +++EL L++I +VE LDK F +VCELD+IF+ +K + IL E++
Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124
Query: 125 LGGEIQETSKKNVLKAIAAQDLLQE 149
+GG + ET+ ++ I AQ+ L++
Sbjct: 125 MGGMVLETNMNEIVTQIDAQNKLEK 149
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW--------KDVK 62
+L+ + GK RL K+Y + ++ +++I REL + R + C+FLE KD K
Sbjct: 5 ILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDKDTK 64
Query: 63 IVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE 122
I+Y+ YA+L+F ++ +++EL +++I +VE LDK F +VCELD+IF+ +K ++ILDE
Sbjct: 65 IIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHYILDE 124
Query: 123 LLLGGEIQETSKKNVLKAIAAQDLLQ 148
+++GG + ET+ + Q+ L+
Sbjct: 125 MVMGGLVLETNPTIIFSNYEIQNKLE 150
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 90/139 (64%), Gaps = 6/139 (4%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDV----KIVYK 66
+ +F+ +GK RL K+Y + +++K+ ++ + R P C+FLE + +I+Y+
Sbjct: 5 VFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYR 64
Query: 67 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLG 126
+YA+LYF +++ ++EL L++I +VE LD+ F +VCELD++F F++ + IL E++ G
Sbjct: 65 QYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSG 124
Query: 127 GEIQETSKKNVLKAIAAQD 145
G + ET+ ++ +AAQ+
Sbjct: 125 GLVLETNLNEIV--LAAQN 141
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 16/146 (10%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELI------------TTILARKPKMCSFLEW 58
+L+F+++ + RL K+Y D K+K+ E + ++ L P + S
Sbjct: 5 VLIFNKKCQPRLVKYYTPV-DLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSE 63
Query: 59 ---KDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEK 115
+D++I+YK YA+LYF ++ ++EL L++I +VE LD+ F V ELD+IFN++
Sbjct: 64 TINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQT 123
Query: 116 AYFILDELLLGGEIQETSKKNVLKAI 141
+L+E++ GG + ET+ K +++ +
Sbjct: 124 LESVLEEIIQGGMVIETNVKKIVETV 149
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 61 VKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 120
++I+YK YA+LYF ++ ++EL L++I +VE LD+ F V ELD+IFN++ +L
Sbjct: 73 IQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFNWQTLESVL 132
Query: 121 DELLLGGEIQETSKKNVLKAIAAQDLL 147
+E++ GG + ET NV + +A+ D L
Sbjct: 133 EEIVQGGMVIET---NVNRIVASVDEL 156
>sp|P35603|AP2M_CAEEL AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2
SV=2
Length = 441
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 11 MLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYAS 70
+ +++ +G++ + + Y D + + + I AR+ + + +
Sbjct: 5 LFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGN 62
Query: 71 LYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQ 130
++ C QN N + E + R+ + + YFG + E ++ NF Y +LDE+L G Q
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 131 ETSKKNVLKAIAAQ 144
T VLK Q
Sbjct: 123 NTD-PGVLKTFITQ 135
>sp|Q29RY8|AP4M1_BOVIN AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 PE=2 SV=1
Length = 452
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 60 DVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFI 119
D ++ R++ LY +N + LE++ R LL Y GS+ E I N Y +
Sbjct: 53 DRHFIHIRHSGLYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYEL 112
Query: 120 LDELLLGGEIQETSKK 135
LDE+L G +Q TS +
Sbjct: 113 LDEVLDYGYVQTTSTE 128
>sp|Q2PWT8|AP4M1_RAT AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=Ap4m1 PE=1 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 60 DVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFI 119
D ++ R++ LY +N + LE++ R LL Y GS+ E I N Y +
Sbjct: 53 DRHFIHIRHSGLYLVATTSENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYEL 112
Query: 120 LDELLLGGEIQETSK---KNVLKAIAA 143
LDE+L G +Q TS +N ++ AA
Sbjct: 113 LDEVLDYGYVQTTSTDMLRNFIQTEAA 139
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101
PE=2 SV=2
Length = 422
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 53 CSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFN 112
L ++D V+ ++ ++Y A N N + L +++ VE+ +YF V E + N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 113 FEKAYFILDELLLGGEIQETSKK 135
F Y +LDE++ G Q T +
Sbjct: 107 FVVIYELLDEMMDFGFPQTTESR 129
>sp|Q55EZ6|COPD_DICDI Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3
SV=1
Length = 540
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 36 KITRELITTILARKPKMC------SFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEI 89
++T+ + +LA PK+ +F+E ++++ VY+ SLY +N N L LE
Sbjct: 23 EMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPLESLYIVLITNKNSNILEDLET 82
Query: 90 IHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQE 149
+H +L+ +Y + E DI N + F DE++ G + + + + I+ + +E
Sbjct: 83 LHLLAKLVPEY-SNFDEYDISKNAFELIFTFDEVIAMGYKERVTLQQIKHFISMESHEEE 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,662,496
Number of Sequences: 539616
Number of extensions: 2117988
Number of successful extensions: 6641
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6518
Number of HSP's gapped (non-prelim): 114
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)