Query psy14094
Match_columns 149
No_of_seqs 113 out of 1072
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_Q Adapter-related protein 100.0 4.4E-46 1.5E-50 276.4 18.3 142 7-148 1-142 (158)
2 3tjz_C Coatomer subunit zeta-1 100.0 3.8E-45 1.3E-49 270.2 16.8 138 4-144 9-149 (153)
3 2vgl_S AP-2 complex subunit si 100.0 1.5E-44 5.1E-49 263.6 19.7 142 7-148 1-142 (142)
4 2vgl_M AP-2 complex subunit MU 100.0 1.6E-35 5.3E-40 249.4 16.1 134 7-143 1-135 (435)
5 1w63_M Adaptor-related protein 100.0 4.4E-36 1.5E-40 252.0 8.6 136 6-144 1-138 (423)
6 2nut_C Vesicle-trafficking pro 97.0 0.025 8.7E-07 42.1 12.9 97 6-103 1-102 (196)
7 4b93_A Vesicle-associated memb 96.7 0.016 5.6E-07 43.0 10.0 84 16-103 10-93 (189)
8 2vx8_A Nucleoporin-like protei 95.9 0.12 4.1E-06 37.8 10.8 84 16-103 52-135 (169)
9 4afi_A AP-3 complex subunit de 95.9 0.072 2.5E-06 39.2 9.6 84 16-103 62-145 (173)
10 3bw6_A Synaptobrevin homolog Y 95.2 0.51 1.7E-05 33.3 12.3 97 7-103 6-111 (144)
11 2j3t_C Trafficking protein par 95.2 0.17 5.7E-06 36.0 9.1 94 6-101 1-109 (145)
12 3kyq_A YKT6, synaptobrevin hom 95.0 0.63 2.1E-05 34.8 12.0 97 6-102 2-107 (199)
13 3cue_C Transport protein parti 94.9 0.089 3.1E-06 38.1 6.9 94 6-101 1-115 (159)
14 3cpt_A Mitogen-activated prote 94.7 0.77 2.6E-05 32.7 11.3 94 6-99 36-135 (143)
15 2j3w_A Sedlin, trafficking pro 94.6 0.44 1.5E-05 33.6 9.8 97 6-103 3-114 (142)
16 2fh5_A Signal recognition part 87.1 7.5 0.00026 28.7 10.2 92 6-102 9-104 (185)
17 3cue_A Transport protein parti 86.2 9.3 0.00032 29.0 12.0 23 6-28 1-23 (219)
18 1nrj_A Signal recognition part 78.1 16 0.00055 26.0 10.5 73 7-79 1-93 (158)
19 3vjz_A DMP19, putative unchara 62.4 3.8 0.00013 29.8 2.0 45 86-130 16-66 (166)
20 2wl8_A Peroxisomal biogenesis 43.6 49 0.0017 22.8 5.1 43 87-129 65-107 (126)
21 2j3t_D Trafficking protein par 43.5 38 0.0013 25.6 4.9 89 12-103 85-184 (219)
22 1vet_B P14, late endosomal/lys 43.0 74 0.0025 21.4 13.2 97 6-102 17-120 (125)
23 3sbc_A Peroxiredoxin TSA1; alp 27.1 52 0.0018 24.5 3.3 23 8-30 143-165 (216)
24 3tue_A Tryparedoxin peroxidase 24.8 64 0.0022 24.0 3.5 22 8-29 147-168 (219)
25 1zye_A Thioredoxin-dependent p 24.4 97 0.0033 22.2 4.4 21 7-27 146-166 (220)
26 2j3t_D Trafficking protein par 21.3 58 0.002 24.5 2.6 23 6-28 1-23 (219)
27 1xcc_A 1-Cys peroxiredoxin; un 21.2 78 0.0027 23.0 3.3 20 8-27 128-147 (220)
28 3or5_A Thiol:disulfide interch 20.7 1.4E+02 0.0047 19.5 4.3 25 8-33 117-141 (165)
29 2v2g_A Peroxiredoxin 6; oxidor 20.7 72 0.0025 23.6 3.1 21 7-27 126-146 (233)
No 1
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.4e-46 Score=276.38 Aligned_cols=142 Identities=80% Similarity=1.337 Sum_probs=136.7
Q ss_pred hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094 7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT 86 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i 86 (149)
||+|++|+|++|+++++|||++.+.+++..+++.+++++.++++++||++++++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 89999999999999999999999998888899999999888776789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094 87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ 148 (149)
Q Consensus 87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~ 148 (149)
+++||+++++|++|||++||.+|++||++||++||||+|+|+||+||++.|+++|+.++++.
T Consensus 81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~ 142 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999987764
No 2
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=3.8e-45 Score=270.18 Aligned_cols=138 Identities=21% Similarity=0.388 Sum_probs=127.2
Q ss_pred ccchhceeEEEeCCCCEEEEecCCCC--ChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCC
Q psy14094 4 YLLNMQFMLLFSRQGKLRLQKWYVAH--PDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQND 81 (149)
Q Consensus 4 ~~~mi~~i~iln~~G~~ll~k~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~ 81 (149)
.++||+|++|+|++|+++++|||+++ +.+++.++++++++++. +++ +|++.+++++++||++++|||++++++++
T Consensus 9 sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~e 85 (153)
T 3tjz_C 9 SLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYE 85 (153)
T ss_dssp CSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SCC--CCEEEETTEEEEEEECSSCEEEEEEETTS
T ss_pred cHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--CCEEEECCEEEEEEEECCEEEEEEEcCCC
Confidence 47899999999999999999999984 55678889999999974 433 79999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh-cccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094 82 NELLTLEIIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ 144 (149)
Q Consensus 82 n~l~ile~L~~lv~~l~~yf-~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~ 144 (149)
||++++++||+++++|++|| |++||++|++||++||++||||+|+|+||+||++.|++||+..
T Consensus 86 Nel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~ 149 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR 149 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC---
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcc
Confidence 99999999999999999999 8999999999999999999999999999999999999999764
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=1.5e-44 Score=263.64 Aligned_cols=142 Identities=45% Similarity=0.864 Sum_probs=134.9
Q ss_pred hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q psy14094 7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLT 86 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~i 86 (149)
||+|++|+|++|+++++|||++.+...++++++.+++.+.++++++||++++++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 89999999999999999999988887788899999999887766789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHHhhhc
Q psy14094 87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQDLLQ 148 (149)
Q Consensus 87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~~~~~ 148 (149)
+++||+++++|++|||++||.+|++||++||++||||+|+|+||+|++..+.+++..+++++
T Consensus 81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~ 142 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142 (142)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999888899998888764
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.6e-35 Score=249.40 Aligned_cols=134 Identities=16% Similarity=0.301 Sum_probs=120.5
Q ss_pred hhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhc-cCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHH
Q psy14094 7 NMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILA-RKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELL 85 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ 85 (149)
||+++||+|++|+++++|||++...+.. ...+++.+.+ ++..++|++++++++++|+++++|||+++++.++|||+
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNA---VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHH---HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhH---HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 8999999999999999999998766433 2344455544 33357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHH
Q psy14094 86 TLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAA 143 (149)
Q Consensus 86 ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~ 143 (149)
+++|||+++++|++|||++||++|++||++||++||||+|+|+||+||++.|++++..
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~ 135 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ 135 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999888754
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.4e-36 Score=251.98 Aligned_cols=136 Identities=20% Similarity=0.324 Sum_probs=120.3
Q ss_pred chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhhcc-C-CCccceeEeCCEEEEEEEeCcEEEEEEecCCCCH
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILAR-K-PKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNE 83 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~ 83 (149)
|||+|++|+|++|+++++|||++...+.. .+.+++.+.++ + ..+||++++++++++|+++++|||+++++.++||
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSE---VEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTT---HHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHH---HHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 69999999999999999999998755432 23344444333 2 3579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEeeecCHHHHHHHHHHH
Q psy14094 84 LLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAAQ 144 (149)
Q Consensus 84 l~ile~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~~~Td~~~i~~~i~~~ 144 (149)
|++++|||+++++|++|||++||++|++||++||++||||+|+|+||+||++.|+++|+..
T Consensus 78 l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~ 138 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999887643
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.96 E-value=0.025 Score=42.06 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=64.6
Q ss_pred chhceeEEEeCCCCEEEEecCCCCCh-----hhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCC
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHPD-----KLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQN 80 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~ 80 (149)
+||...+|.-....++|+.++..... .+.....+.+.+++....+... .++.+++.|-|...+++.++++++.+
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 36666666554324555666653211 2233344555555543122222 35679999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcc
Q psy14094 81 DNELLTLEIIHRYVELLDKYFGS 103 (149)
Q Consensus 81 ~n~l~ile~L~~lv~~l~~yf~~ 103 (149)
.+.-..+.||..+.+-+..-++.
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999888776653
No 7
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=96.70 E-value=0.016 Score=43.04 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094 16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE 95 (149)
Q Consensus 16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~ 95 (149)
.+|.++|+.|=... ..-..+.+.+..++.+.+++ -.+++|++.|-|...+++.++++++.+.+.-..+.||..+.+
T Consensus 10 Arg~~iLae~t~~~--gnf~~ia~~iL~kip~~~~k--~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 10 ARGTTILAKHAWCG--GNFLEVTEQILAKIPSENNK--LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EETTEEEEEEESSE--ECHHHHHHHHHTTCCSSSEE--EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCCC--CCHHHHHHHHHHhCCCCCCe--EEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 36999999873322 11222334444443322111 245789999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q psy14094 96 LLDKYFGS 103 (149)
Q Consensus 96 ~l~~yf~~ 103 (149)
-+..-++.
T Consensus 86 eF~~~~~~ 93 (189)
T 4b93_A 86 RFQTTYGS 93 (189)
T ss_dssp HHHHHHGG
T ss_pred HHHhhccc
Confidence 88877764
No 8
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=95.94 E-value=0.12 Score=37.83 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094 16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE 95 (149)
Q Consensus 16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~ 95 (149)
.+|.++|+.+=.... .-....+.+.+++..++.+ -.++.+++.|-|...+++.++++++.+..--..+.||..+.+
T Consensus 52 aRG~~VLae~t~~~g--nf~~iak~ll~kl~~~~~r--~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~ 127 (169)
T 2vx8_A 52 ARGTTILAKHAWCGG--NFLEVTEQILAKIPSENNK--LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 127 (169)
T ss_dssp EETTEEEEEEESSCB--SHHHHHHHHHTTSCSSCEE--EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EcCCEEEEEeccCCC--CHHHHHHHHHhhCCCCCCc--eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence 457788888643221 2223445555555432221 246789999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q psy14094 96 LLDKYFGS 103 (149)
Q Consensus 96 ~l~~yf~~ 103 (149)
-+..-++.
T Consensus 128 eF~~~y~~ 135 (169)
T 2vx8_A 128 RFQTTYGS 135 (169)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhh
Confidence 99887765
No 9
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=95.94 E-value=0.072 Score=39.20 Aligned_cols=84 Identities=11% Similarity=0.172 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHHHHHHHHhhccCCCccceeEeCCEEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q psy14094 16 RQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVE 95 (149)
Q Consensus 16 ~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~ 95 (149)
.+|.++|+.|=.....- ..+.+.+..++... +.. -.++.+++.|-|...+++.++++++.+..--..+.||..+-+
T Consensus 62 Arg~tiLAE~t~~~gnf--~~va~~iL~kip~~-~~r-~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 62 ARGTTILAKHAWCGGNF--LEVTEQILAKIPSE-NNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp EETTEEEEEEESSCCCH--HHHHHHHHTTSCSS-SEE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred ECCCEEEEEccCCCCCH--HHHHHHHHHhCCCC-CCe-EEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 45889999875433221 12333443333221 111 245789999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q psy14094 96 LLDKYFGS 103 (149)
Q Consensus 96 ~l~~yf~~ 103 (149)
-+..-+|.
T Consensus 138 eF~~~yg~ 145 (173)
T 4afi_A 138 RFQTTYGS 145 (173)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhch
Confidence 98887774
No 10
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.23 E-value=0.51 Score=33.33 Aligned_cols=97 Identities=8% Similarity=-0.002 Sum_probs=65.0
Q ss_pred hhceeEEEeCCC--CEEEEecCCCC-----ChhhHHHHHHHHHHHhhccCCC-ccceeEeCCEEEEEE-EeCcEEEEEEe
Q psy14094 7 NMQFMLLFSRQG--KLRLQKWYVAH-----PDKLKKKITRELITTILARKPK-MCSFLEWKDVKIVYK-RYASLYFCCAI 77 (149)
Q Consensus 7 mi~~i~iln~~G--~~ll~k~y~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~~~~~~vy~-~~~~Lyfv~v~ 77 (149)
-|-++.|+-..+ -++|+..++-. .....+++...+.+.+..|.+. .---++.+++.+-|. +.+++.+++++
T Consensus 6 kl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 6 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp CEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 344565654432 46777766532 1223355556666666554432 112356789988887 78999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14094 78 EQNDNELLTLEIIHRYVELLDKYFGS 103 (149)
Q Consensus 78 ~~~~n~l~ile~L~~lv~~l~~yf~~ 103 (149)
+.+-..-..+.||+.+.+-+..-++.
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCChhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999888877766653
No 11
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=95.21 E-value=0.17 Score=36.03 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred chhceeEEEeCCCCEEEEecCCCCC----h-hhHHHHHHHHHHHhh------ccCCCcc--ceeEeCCEE-EEEEEeCcE
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHP----D-KLKKKITRELITTIL------ARKPKMC--SFLEWKDVK-IVYKRYASL 71 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~----~-~~~~~~~~~~~~~~~------~~~~~~~--pi~~~~~~~-~vy~~~~~L 71 (149)
|++.+++|+|++|.++..|-|.+.. . .+...+...++..+. +...... -.+..++++ ..|..-.++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 5788999999999999999996431 1 222222333332221 1111111 233456664 678888899
Q ss_pred EEEEEecCCCCHHHHHHHHHHHH-HHHHHHh
Q psy14094 72 YFCCAIEQNDNELLTLEIIHRYV-ELLDKYF 101 (149)
Q Consensus 72 yfv~v~~~~~n~l~ile~L~~lv-~~l~~yf 101 (149)
-|+++++.+++. +=++|+++. ++.-+|.
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 999999988765 557888888 6777754
No 12
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=94.96 E-value=0.63 Score=34.77 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=66.9
Q ss_pred chhceeEEEeCCCC--EEEEecCCCC-----ChhhHHHHHHHHHHHhhccCCC-ccceeEeCCEEEE-EEEeCcEEEEEE
Q psy14094 6 LNMQFMLLFSRQGK--LRLQKWYVAH-----PDKLKKKITRELITTILARKPK-MCSFLEWKDVKIV-YKRYASLYFCCA 76 (149)
Q Consensus 6 ~mi~~i~iln~~G~--~ll~k~y~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~~~~~~v-y~~~~~Lyfv~v 76 (149)
|-+-++.|+-..|+ .+|+..|+-. ......++.....+.+..+.+. .--.++.+++.+- |...+++.++++
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 45667777776554 3456666521 2334444444444455555432 1123567888887 999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHhc
Q psy14094 77 IEQNDNELLTLEIIHRYVELLDKYFG 102 (149)
Q Consensus 77 ~~~~~n~l~ile~L~~lv~~l~~yf~ 102 (149)
++.+.+.-..+.||..+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888887776
No 13
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.089 Score=38.12 Aligned_cols=94 Identities=10% Similarity=0.174 Sum_probs=55.6
Q ss_pred chhceeEEEeCCCCEEEEecCCCC-------C----hhhHHHHHHHHHHHh---hcc---CCCcccee--EeCCEE-EEE
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAH-------P----DKLKKKITRELITTI---LAR---KPKMCSFL--EWKDVK-IVY 65 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~-------~----~~~~~~~~~~~~~~~---~~~---~~~~~pi~--~~~~~~-~vy 65 (149)
|+|.+++|+|+.|.++..|-|.+. . ..+...+....+..+ ..+ ......+. ..+.++ ..|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 678999999999999999988531 1 111111222222221 111 11112232 234444 567
Q ss_pred EEeCcEEEEEEecCCCCHHHHHHHHHHHHH-HHHHHh
Q psy14094 66 KRYASLYFCCAIEQNDNELLTLEIIHRYVE-LLDKYF 101 (149)
Q Consensus 66 ~~~~~Lyfv~v~~~~~n~l~ile~L~~lv~-~l~~yf 101 (149)
..-.++-|+++++..++.+ =++|+++.+ +.-+|.
T Consensus 81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 7778999999999887654 467788886 766654
No 14
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=94.71 E-value=0.77 Score=32.74 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=64.8
Q ss_pred chhceeEEEeCCCCEEEEecCCCCCh-hhHHHHHHHHHHHhhc----cCCCccc-eeEeCCEEEEEEEeCcEEEEEEecC
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHPD-KLKKKITRELITTILA----RKPKMCS-FLEWKDVKIVYKRYASLYFCCAIEQ 79 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~~-~~~~~~~~~~~~~~~~----~~~~~~p-i~~~~~~~~vy~~~~~Lyfv~v~~~ 79 (149)
.-+.+++|-|++|-|++.-...+... .-+..+...+-..+.. .-.+..+ +-.++++.+|+.....+++..++++
T Consensus 36 ~Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~ 115 (143)
T 3cpt_A 36 EGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASS 115 (143)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEET
T ss_pred CCeEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecC
Confidence 35689999999999999988776433 2222344443222211 0122223 4467899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14094 80 NDNELLTLEIIHRYVELLDK 99 (149)
Q Consensus 80 ~~n~l~ile~L~~lv~~l~~ 99 (149)
+.|--+++++=+.+..+++.
T Consensus 116 ~aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 116 SANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHhhhHHHHHHHHHH
Confidence 99999999876666555554
No 15
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=94.56 E-value=0.44 Score=33.57 Aligned_cols=97 Identities=5% Similarity=0.023 Sum_probs=59.3
Q ss_pred ch-hceeEEEeCCCCEEEEecCCCCCh---hhHHHHHH-HHHHHh----hcc--CCCcc---ceeEeCCEE-EEEEEeCc
Q psy14094 6 LN-MQFMLLFSRQGKLRLQKWYVAHPD---KLKKKITR-ELITTI----LAR--KPKMC---SFLEWKDVK-IVYKRYAS 70 (149)
Q Consensus 6 ~m-i~~i~iln~~G~~ll~k~y~~~~~---~~~~~~~~-~~~~~~----~~~--~~~~~---pi~~~~~~~-~vy~~~~~ 70 (149)
|+ +.++.|+|++|.++..+-|.+... .+..++.. .+.... ... +.... .+-..++++ +.|..-.+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 44 789999999999999999975421 11222222 111111 111 11111 112234443 67888889
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14094 71 LYFCCAIEQNDNELLTLEIIHRYVELLDKYFGS 103 (149)
Q Consensus 71 Lyfv~v~~~~~n~l~ile~L~~lv~~l~~yf~~ 103 (149)
+-|+++++.. ++-.+-++++++.++.-+|.-|
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 9999999863 4666778888888877777654
No 16
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=87.05 E-value=7.5 Score=28.71 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=57.3
Q ss_pred chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHHHhh--ccCCCccceeEeCCEEEEEEEeCc--EEEEEEecCCC
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTIL--ARKPKMCSFLEWKDVKIVYKRYAS--LYFCCAIEQND 81 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~pi~~~~~~~~vy~~~~~--Lyfv~v~~~~~ 81 (149)
.|+..+.|+++.|=+|-+ |.+.... .......+.+.+. .|.. .+.+.++++++=|...++ |.|+++-..--
T Consensus 9 ~~~D~~~IfTkGGvVLWs--~~~~~~~-~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL 83 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWC--FQGVSDS-CTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKIL 83 (185)
T ss_dssp CSCSEEEEEETTSBEEEE--EBTTTBS-CCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred cceeEEEEEeCCeEEEEe--ecCCccc-ccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccc
Confidence 588999999999988877 3332111 0113444444443 2332 345778999998888875 89999988766
Q ss_pred CHHHHHHHHHHHHHHHHHHhc
Q psy14094 82 NELLTLEIIHRYVELLDKYFG 102 (149)
Q Consensus 82 n~l~ile~L~~lv~~l~~yf~ 102 (149)
+-..+-++|..+...+.+-|+
T Consensus 84 ~L~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 84 TLTYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp GHHHHHHHHHHHHHHHHHHTH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666664
No 17
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=86.22 E-value=9.3 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.4
Q ss_pred chhceeEEEeCCCCEEEEecCCC
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVA 28 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~ 28 (149)
|+|..++|+|+.|..+..|.|..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~ 23 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTN 23 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSS
T ss_pred CeeEEEEEEeCCCCEEeehhhcc
Confidence 67899999999999999999974
No 18
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=78.07 E-value=16 Score=26.02 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=45.5
Q ss_pred hhceeEEEeCCCCEEEEec--CCCCChhhHHHHHHHHHHHhhccCCC---------ccceeEe-------CCEEEEEEE-
Q psy14094 7 NMQFMLLFSRQGKLRLQKW--YVAHPDKLKKKITRELITTILARKPK---------MCSFLEW-------KDVKIVYKR- 67 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~--y~~~~~~~~~~~~~~~~~~~~~~~~~---------~~pi~~~-------~~~~~vy~~- 67 (149)
|+..+.|+..+|++++.-. =+........++...+...-.++.+. --+++.+ +++++.|.-
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 7889999999999998643 23345555556666665432222211 1256666 777777654
Q ss_pred -eCcEEEEEEecC
Q psy14094 68 -YASLYFCCAIEQ 79 (149)
Q Consensus 68 -~~~Lyfv~v~~~ 79 (149)
...|||+++-.+
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 567999988854
No 19
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=62.38 E-value=3.8 Score=29.83 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcccC-----HHHHHhcHHHHHHHH-HHHHhCcEee
Q psy14094 86 TLEIIHRYVELLDKYFGSVC-----ELDIIFNFEKAYFIL-DELLLGGEIQ 130 (149)
Q Consensus 86 ile~L~~lv~~l~~yf~~v~-----E~~i~~Nf~~v~~ll-DE~id~G~~~ 130 (149)
--+||+.|++.....++.++ ..+--.+--+.|.+| +|++++|++|
T Consensus 16 ~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQ 66 (166)
T 3vjz_A 16 PSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQ 66 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHh
Confidence 45688888888888887433 233444566777766 5788999876
No 20
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=43.59 E-value=49 Score=22.77 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHhcHHHHHHHHHHHHhCcEe
Q psy14094 87 LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGEI 129 (149)
Q Consensus 87 le~L~~lv~~l~~yf~~v~E~~i~~Nf~~v~~llDE~id~G~~ 129 (149)
++++.++++.+++=--+=++..-+.+|..|.+++.||=+.|-|
T Consensus 65 ~~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~P 107 (126)
T 2wl8_A 65 HSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHP 107 (126)
T ss_dssp HHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555543110112233457899999999999999987
No 21
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=43.48 E-value=38 Score=25.56 Aligned_cols=89 Identities=9% Similarity=0.125 Sum_probs=54.5
Q ss_pred EEEeCCCCEEEEecCCCCC-hhhHHHHHHHHHHH-------hhccCCC-ccceeEeCCEE-EEEEEeCcEEEEEEecCCC
Q psy14094 12 LLFSRQGKLRLQKWYVAHP-DKLKKKITRELITT-------ILARKPK-MCSFLEWKDVK-IVYKRYASLYFCCAIEQND 81 (149)
Q Consensus 12 ~iln~~G~~ll~k~y~~~~-~~~~~~~~~~~~~~-------~~~~~~~-~~pi~~~~~~~-~vy~~~~~Lyfv~v~~~~~ 81 (149)
+|.+++..|+.-|.|.+.. ..+...+ ..++.. +...... .-..+..++++ +.|..-.++-|+++++.++
T Consensus 85 ~iigk~N~PLyir~f~~~l~sn~~L~l-ag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~ 163 (219)
T 2j3t_D 85 YLGNPANYPVSIRFGRPRLTSNEKLML-ASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQ 163 (219)
T ss_dssp HTTCGGGCSEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTC
T ss_pred eeecCCCCceEEEecCCCCChhHHHHH-HHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCc
Confidence 3456778899999998753 2222221 222111 1111111 11344567766 6788888999999999875
Q ss_pred CHHHHHHHHHHHHHHHHHH-hcc
Q psy14094 82 NELLTLEIIHRYVELLDKY-FGS 103 (149)
Q Consensus 82 n~l~ile~L~~lv~~l~~y-f~~ 103 (149)
+. +-++|+++.++.-+| .++
T Consensus 164 ~~--ir~~l~~IyelYvd~V~kN 184 (219)
T 2j3t_D 164 AG--IDSLLRKIYEIYSDFALKN 184 (219)
T ss_dssp CC--HHHHHHHHHHHHHHHHTTC
T ss_pred hH--HHHHHHHHHHHHHHHhccC
Confidence 54 458888888888887 444
No 22
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=43.02 E-value=74 Score=21.39 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=62.6
Q ss_pred chhceeEEEeCCCCEEEEecCCCCChhhHHHHHHHHHH---Hhhcc----CCCccceeEeCCEEEEEEEeCcEEEEEEec
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELIT---TILAR----KPKMCSFLEWKDVKIVYKRYASLYFCCAIE 78 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~~~~~~~~~~~~~~~~---~~~~~----~~~~~pi~~~~~~~~vy~~~~~Lyfv~v~~ 78 (149)
+-+.+.++++.+|-++-+.-...+..+...+.-..++. ..... .+-..-+++.++-.++-....+.++++.++
T Consensus 17 ~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~ 96 (125)
T 1vet_B 17 GGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAK 96 (125)
T ss_dssp TTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeC
Confidence 35678899999999998876654444444444455433 22111 112235667765444444448899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Q psy14094 79 QNDNELLTLEIIHRYVELLDKYFG 102 (149)
Q Consensus 79 ~~~n~l~ile~L~~lv~~l~~yf~ 102 (149)
.+.+.=.+-.=++++++-|..-+.
T Consensus 97 ~~a~lGlv~~~m~~lv~~L~~~lr 120 (125)
T 1vet_B 97 ETVGFGMLKAKAQALVQYLEEPLT 120 (125)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCC--
T ss_pred CCCChHHHHHHHHHHHHHHhhhhh
Confidence 999988888888888866654433
No 23
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=27.11 E-value=52 Score=24.47 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=19.2
Q ss_pred hceeEEEeCCCCEEEEecCCCCC
Q psy14094 8 MQFMLLFSRQGKLRLQKWYVAHP 30 (149)
Q Consensus 8 i~~i~iln~~G~~ll~k~y~~~~ 30 (149)
..+.||+|.+|.++..-.|....
T Consensus 143 ~R~tFiID~~G~Ir~~~v~~~~~ 165 (216)
T 3sbc_A 143 LRGLFIIDPKGVIRHITINDLPV 165 (216)
T ss_dssp CEEEEEECTTSBEEEEEEECTTB
T ss_pred eeEEEEECCCCeEEEEEEcCCCC
Confidence 47899999999999988886543
No 24
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=24.77 E-value=64 Score=24.01 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=18.3
Q ss_pred hceeEEEeCCCCEEEEecCCCC
Q psy14094 8 MQFMLLFSRQGKLRLQKWYVAH 29 (149)
Q Consensus 8 i~~i~iln~~G~~ll~k~y~~~ 29 (149)
..+.||+|.+|.++..-.|...
T Consensus 147 ~R~tFiIDp~g~Ir~~~~~~~~ 168 (219)
T 3tue_A 147 YRGLFIIDPHGMLRQITVNDMP 168 (219)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred EEEEEEECCCCeEEEEEEecCC
Confidence 4689999999999998877544
No 25
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=24.36 E-value=97 Score=22.24 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=15.9
Q ss_pred hhceeEEEeCCCCEEEEecCC
Q psy14094 7 NMQFMLLFSRQGKLRLQKWYV 27 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~y~ 27 (149)
.+-.++++|.+|+++......
T Consensus 146 ~~P~~~liD~~G~I~~~~~g~ 166 (220)
T 1zye_A 146 ALRGLFIIDPNGVIKHLSVND 166 (220)
T ss_dssp ECEEEEEECTTSBEEEEEEEC
T ss_pred ccceEEEECCCCEEEEEEecC
Confidence 345789999999988765443
No 26
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=21.32 E-value=58 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.1
Q ss_pred chhceeEEEeCCCCEEEEecCCC
Q psy14094 6 LNMQFMLLFSRQGKLRLQKWYVA 28 (149)
Q Consensus 6 ~mi~~i~iln~~G~~ll~k~y~~ 28 (149)
|.|.+++|+|+.|..+..+.|..
T Consensus 1 m~iy~~yi~~~~~~liy~~~~~~ 23 (219)
T 2j3t_D 1 MAIFSVYVVNKAGGLIYQLDSYA 23 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECC-
T ss_pred CeEEEEEEEecCCceEEecccCC
Confidence 34789999999999999998774
No 27
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=21.18 E-value=78 Score=22.98 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.1
Q ss_pred hceeEEEeCCCCEEEEecCC
Q psy14094 8 MQFMLLFSRQGKLRLQKWYV 27 (149)
Q Consensus 8 i~~i~iln~~G~~ll~k~y~ 27 (149)
+.+.||+|.+|+++..-.|.
T Consensus 128 ~p~~flID~~G~I~~~~~~~ 147 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLYP 147 (220)
T ss_dssp CEEEEEECTTSBEEEEEEEC
T ss_pred cceEEEECCCCEEEEEEecC
Confidence 56899999999999887664
No 28
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=20.73 E-value=1.4e+02 Score=19.46 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=15.7
Q ss_pred hceeEEEeCCCCEEEEecCCCCChhh
Q psy14094 8 MQFMLLFSRQGKLRLQKWYVAHPDKL 33 (149)
Q Consensus 8 i~~i~iln~~G~~ll~k~y~~~~~~~ 33 (149)
+-.++++|.+|+++ .++.......+
T Consensus 117 ~P~~~lid~~G~i~-~~~~g~~~~~~ 141 (165)
T 3or5_A 117 IPTSFVIDASGNVS-GVIVGPRSKAD 141 (165)
T ss_dssp SSEEEEECTTSBEE-EEECSCCCHHH
T ss_pred CCeEEEECCCCcEE-EEEcCCCCHHH
Confidence 44689999999986 34433333333
No 29
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=20.70 E-value=72 Score=23.56 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.4
Q ss_pred hhceeEEEeCCCCEEEEecCC
Q psy14094 7 NMQFMLLFSRQGKLRLQKWYV 27 (149)
Q Consensus 7 mi~~i~iln~~G~~ll~k~y~ 27 (149)
.+.++||+|.+|+++..-.|.
T Consensus 126 ~~p~~fiID~~G~I~~~~~~~ 146 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILYP 146 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEEC
T ss_pred ccceEEEECCCCEEEEEEecC
Confidence 356899999999999887664
Done!