RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14094
         (149 letters)



>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain. 
          Length = 142

 Score =  197 bits (503), Expect = 3e-66
 Identities = 77/141 (54%), Positives = 107/141 (75%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++ +L+F+RQGK RL KWY  + D  ++K+  ++   I ARKPKM +F+E+ D+K++YKR
Sbjct: 2   IKAILIFNRQGKPRLAKWYTPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYKR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA+LYF   ++  DNEL+ LE+IHR+VE LD+YFG+VCELD+IFNFEK Y ILDE+++GG
Sbjct: 62  YATLYFVVIVDDQDNELIILELIHRFVESLDRYFGNVCELDLIFNFEKVYLILDEMVMGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQ 148
           EI ETSK  VL  +A  D L 
Sbjct: 122 EILETSKNEVLHRVALLDELA 142


>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit
           [Intracellular trafficking and secretion].
          Length = 152

 Score =  184 bits (468), Expect = 8e-61
 Identities = 74/142 (52%), Positives = 105/142 (73%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++F+L+F+RQGK RL KWY    D  + K+  ++   I ARKPK  +F+E K+ KIVY+R
Sbjct: 2   IKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA+LYF   ++ +DNEL+ LE+IH +VE+LD++FG+VCELD+IFNF+K Y ILDE++LGG
Sbjct: 62  YATLYFVFGVDNDDNELIILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQE 149
           EI E+SK  VL+ + A D    
Sbjct: 122 EIIESSKNEVLEHVYALDAEST 143


>gnl|CDD|238788 cd01530, Cdc25, Cdc25 phosphatases are members of the Rhodanese
           Homology Domain superfamily. They activate the cell
           division kinases throughout the cell cycle progression.
           Cdc25 phosphatases dephosphorylate phosphotyrosine and
           phosphothreonine residues, in order to activate their
           Cdk/cyclin substrates. Cdc25A phosphatase functions to
           regulate S phase entry and Cdc25B is required for G2/M
           phase transition of the cell cycle. The Cdc25 domain
           binds oxyanions at the catalytic site and has the
           signature motif (H/YCxxxxxR).
          Length = 121

 Score = 27.6 bits (62), Expect = 1.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 48  RKPKMCSFLEWKDVKIVYKRYASLYF 73
           R P+M   L   D ++   RY  LY+
Sbjct: 81  RGPRMARHLRNLDRELNSNRYPLLYY 106


>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl
           hydrolase family 28 includes polygalacturonase
           EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A),
           EC:3.2.1.-. These enzymes is important in cell wall
           metabolism.
          Length = 325

 Score = 27.7 bits (62), Expect = 2.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 44  TILARKPKMCSFLEWKDVKIVY 65
            +L  K   CS   W+DV I  
Sbjct: 288 KLLCSKGSPCSGWTWEDVDITG 309


>gnl|CDD|217467 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein. 
          Length = 222

 Score = 26.7 bits (59), Expect = 5.1
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 18 GKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW 58
          G ++L+ W + +P+++ K + + LI T L    K    ++ 
Sbjct: 51 GDIKLRDW-IPNPEEMSKSVCKRLILTGLYNAEKAAEIIKL 90


>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
          Length = 973

 Score = 26.6 bits (59), Expect = 7.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 65  YK-RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEL 123
           YK  Y  +++   I    N   + E I +YV+        V   DI F+ E A F   ++
Sbjct: 695 YKANYPLVFYSALI---SNSNGSQENIKKYVKEAKNNGIKVYSPDINFSTENAVFDNGKI 751

Query: 124 LL 125
            L
Sbjct: 752 FL 753


>gnl|CDD|180840 PRK07105, PRK07105, pyridoxamine kinase; Validated.
          Length = 284

 Score = 26.0 bits (58), Expect = 7.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 109 IIFNFEKAYFILDELLLGGEIQETSKKNVLKAIAA 143
           I  N  +A  +LD+  L     E   K +L+ +A 
Sbjct: 141 ITPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLAD 175


>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387).  This
           domain is functionally uncharacterized. This domain is
           found in bacteria and archaea. This presumed domain is
           typically between 255 to 340 amino acids in length. This
           domain is found associated with pfam04851, pfam04313.
          Length = 333

 Score = 26.0 bits (58), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 124 LLGGEIQETSKKNVLKAIAAQDLLQE 149
           LL  EI+  SK N++++    + L+E
Sbjct: 178 LLNDEIKSRSKTNLVQSKKFSERLEE 203


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0802    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,831,830
Number of extensions: 733642
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 24
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)