RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14094
         (149 letters)



>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
           protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 142

 Score =  146 bits (369), Expect = 1e-46
 Identities = 64/141 (45%), Positives = 97/141 (68%)

Query: 8   MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKR 67
           ++F+L+ +R GK RL KWY+   D  K+K+  E+   +  R  K  +F+E+++ KI+Y+R
Sbjct: 2   IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61

Query: 68  YASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGG 127
           YA LYFC  ++ NDN L  LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L G
Sbjct: 62  YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121

Query: 128 EIQETSKKNVLKAIAAQDLLQ 148
           EI+ETS+  VLK +     L+
Sbjct: 122 EIRETSQTKVLKQLLMLQSLE 142


>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
           protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 141

 Score =  105 bits (264), Expect = 9e-31
 Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 9   QFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRY 68
             + +++ +G++ + + Y     +    +    +  I AR+               + + 
Sbjct: 3   GGLFIYNHKGEVLISRVYRDDIGR--NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60

Query: 69  ASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLLGGE 128
           ++++     +QN N  +  E +++  +++  YFG + E +I  NF   Y +LDE+L  G 
Sbjct: 61  SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120

Query: 129 IQETSKKNVLKAIAAQDLLQE 149
            Q +    +   I  Q +  +
Sbjct: 121 PQNSETGALKTFITQQGIKSQ 141


>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 105

 Score = 26.1 bits (57), Expect = 0.96
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 18  GKLRLQKWYVAHPDKLKKKITRELITTILARKPKMCSFLEWKDVKIVYKRYASLYFCCAI 77
           G    ++WY  H       +TR     +L R P+  +FL  K  +         Y     
Sbjct: 4   GIHESKEWY--HA-----SLTRAQAEHMLMRVPRDGAFLVRKRNEPNS------YAISFR 50

Query: 78  EQNDNELLTLEIIHRYVELLDKYFGSVCEL 107
            +   +   ++   + V L +  F S+ +L
Sbjct: 51  AEGKIKHCRVQQEGQTVMLGNSEFDSLVDL 80


>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 109

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 21/90 (23%)

Query: 23  QKWYVAHPDKLKKKITRELITTILARKPKMCSFLEW-----KDVKIVYKRYASLYFCCAI 77
           ++W+  HP      IT      +L  +    SFL            +  R         I
Sbjct: 3   RRWF--HP-----NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKI 55

Query: 78  EQNDNELLTLEIIHRYVELLDKYFGSVCEL 107
           +   +          Y     + F ++ EL
Sbjct: 56  QNTGD---------YYDLYGGEKFATLAEL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,603
Number of extensions: 27512
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)