Query psy14095
Match_columns 132
No_of_seqs 111 out of 794
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:24:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01657 P-ATPase-V P-type AT 99.9 1.2E-25 2.7E-30 198.2 16.6 128 3-130 94-226 (1054)
2 KOG0208|consensus 99.9 1.2E-24 2.5E-29 186.0 9.0 129 2-130 114-247 (1140)
3 KOG0209|consensus 99.9 9.4E-23 2E-27 172.4 12.2 126 4-130 124-250 (1160)
4 TIGR01523 ATPase-IID_K-Na pota 99.5 5.7E-14 1.2E-18 124.5 11.5 87 42-128 25-112 (1053)
5 PRK10517 magnesium-transportin 99.5 9.9E-14 2.1E-18 121.5 12.3 87 42-128 66-153 (902)
6 TIGR01524 ATPase-IIIB_Mg magne 99.5 1.3E-13 2.8E-18 120.4 12.0 88 42-129 32-123 (867)
7 PRK15122 magnesium-transportin 99.5 4.6E-13 1E-17 117.4 12.4 95 35-129 36-146 (903)
8 TIGR01522 ATPase-IIA2_Ca golgi 99.5 3.7E-13 8.1E-18 117.7 11.4 95 35-129 13-112 (884)
9 PF00690 Cation_ATPase_N: Cati 99.4 5.4E-13 1.2E-17 82.8 5.8 57 35-91 10-69 (69)
10 TIGR01647 ATPase-IIIA_H plasma 99.4 1.6E-12 3.5E-17 112.1 10.1 86 43-128 1-86 (755)
11 TIGR01106 ATPase-IIC_X-K sodiu 99.4 3.5E-12 7.7E-17 112.8 11.2 87 42-128 35-135 (997)
12 smart00831 Cation_ATPase_N Cat 99.4 3.1E-12 6.6E-17 78.1 6.4 53 42-94 9-62 (64)
13 TIGR01517 ATPase-IIB_Ca plasma 99.3 1.1E-11 2.5E-16 109.1 11.7 88 42-129 57-160 (941)
14 KOG0202|consensus 99.2 2E-12 4.4E-17 110.5 2.1 97 35-131 13-115 (972)
15 COG0474 MgtA Cation transport 98.9 3.8E-09 8.2E-14 93.1 8.7 88 42-129 43-138 (917)
16 KOG0205|consensus 97.9 6.7E-06 1.4E-10 70.0 1.8 88 33-121 25-121 (942)
17 KOG0204|consensus 97.8 9E-06 1.9E-10 70.7 1.1 55 42-96 116-173 (1034)
18 KOG0203|consensus 97.1 0.00011 2.5E-09 64.0 0.0 99 32-130 41-162 (1019)
19 TIGR01116 ATPase-IIA1_Ca sarco 96.6 0.0069 1.5E-07 54.0 7.3 58 72-129 1-68 (917)
20 TIGR01652 ATPase-Plipid phosph 93.0 0.56 1.2E-05 42.7 8.2 72 56-127 1-81 (1057)
21 PRK14010 potassium-transportin 87.6 3.6 7.8E-05 36.0 8.1 56 74-129 28-101 (673)
22 TIGR01525 ATPase-IB_hvy heavy 86.0 3.9 8.5E-05 34.6 7.4 45 85-129 6-50 (556)
23 TIGR01512 ATPase-IB2_Cd heavy 85.0 4.4 9.5E-05 34.2 7.2 42 87-129 9-50 (536)
24 PRK01122 potassium-transportin 83.9 7.7 0.00017 34.0 8.3 56 74-129 29-101 (679)
25 TIGR01497 kdpB K+-transporting 75.9 19 0.00042 31.6 8.2 55 74-128 28-98 (675)
26 PF12368 DUF3650: Protein of u 62.8 7.8 0.00017 19.7 1.8 16 40-55 12-27 (28)
27 COG1836 Predicted membrane pro 57.4 32 0.0007 26.4 5.2 43 85-127 43-85 (247)
28 PF12534 DUF3733: Leucine-rich 50.5 18 0.00038 22.1 2.3 40 54-93 8-48 (65)
29 PF04695 Pex14_N: Peroxisomal 43.4 19 0.00042 24.8 2.0 23 38-60 29-51 (136)
30 PF13404 HTH_AsnC-type: AsnC-t 41.2 29 0.00062 18.9 2.1 25 31-55 16-40 (42)
31 PF06305 DUF1049: Protein of u 40.7 76 0.0016 18.6 6.2 12 120-131 52-63 (68)
32 PF02699 YajC: Preprotein tran 40.0 68 0.0015 20.1 4.0 20 112-131 17-36 (82)
33 PRK11033 zntA zinc/cadmium/mer 39.4 1.8E+02 0.0038 25.8 7.7 32 98-129 207-238 (741)
34 PF09925 DUF2157: Predicted me 39.3 1.3E+02 0.0027 20.7 9.9 49 42-98 8-57 (145)
35 PHA02677 hypothetical protein; 39.1 87 0.0019 20.9 4.4 31 99-129 10-40 (108)
36 TIGR01654 bact_immun_7tm bacte 38.2 2.8E+02 0.006 24.3 8.8 71 47-128 536-610 (679)
37 COG5038 Ca2+-dependent lipid-b 38.2 1.6E+02 0.0035 27.8 7.3 48 81-129 159-207 (1227)
38 TIGR03147 cyt_nit_nrfF cytochr 36.7 1.4E+02 0.0031 20.5 6.1 24 42-65 72-96 (126)
39 TIGR03643 conserved hypothetic 35.7 40 0.00087 21.0 2.3 24 29-52 10-33 (72)
40 PF11697 DUF3293: Protein of u 34.6 37 0.0008 20.8 2.1 20 42-61 54-73 (73)
41 PF14981 FAM165: FAM165 family 34.4 92 0.002 17.7 5.3 30 100-129 14-43 (51)
42 PF10985 DUF2805: Protein of u 34.3 43 0.00093 20.9 2.3 24 29-52 9-32 (73)
43 PF10975 DUF2802: Protein of u 33.3 63 0.0014 19.8 2.9 26 32-57 44-69 (70)
44 PF11431 Transport_MerF: Membr 33.2 46 0.001 18.9 2.1 27 78-104 1-27 (46)
45 PTZ00370 STEVOR; Provisional 33.0 1.2E+02 0.0026 24.0 5.0 29 93-121 254-282 (296)
46 PF03918 CcmH: Cytochrome C bi 32.2 42 0.00091 23.7 2.3 25 42-66 72-97 (148)
47 smart00540 LEM in nuclear memb 32.2 45 0.00098 18.6 2.0 24 42-65 4-27 (44)
48 PF06667 PspB: Phage shock pro 32.0 80 0.0017 19.7 3.3 21 77-97 7-27 (75)
49 COG4496 Uncharacterized protei 30.4 13 0.00028 24.3 -0.6 39 21-59 45-85 (100)
50 TIGR02976 phageshock_pspB phag 30.2 84 0.0018 19.6 3.1 21 77-97 7-27 (75)
51 PRK05585 yajC preprotein trans 29.9 1.4E+02 0.003 19.8 4.4 17 115-131 36-52 (106)
52 PF11241 DUF3043: Protein of u 29.5 2.2E+02 0.0048 20.6 8.1 21 105-125 110-130 (170)
53 PF11044 TMEMspv1-c74-12: Plec 29.4 1.1E+02 0.0025 17.2 4.7 21 100-120 10-30 (49)
54 PF11877 DUF3397: Protein of u 29.4 1.7E+02 0.0038 19.4 6.5 48 74-122 36-83 (116)
55 COG1862 YajC Preprotein transl 29.4 1.4E+02 0.003 19.6 4.2 16 116-131 28-43 (97)
56 PRK10144 formate-dependent nit 28.9 2E+02 0.0043 19.8 6.3 24 42-65 72-96 (126)
57 TIGR01478 STEVOR variant surfa 28.8 1.5E+02 0.0032 23.5 4.9 28 94-121 259-286 (295)
58 PRK10755 sensor protein BasS/P 28.4 2.7E+02 0.0059 21.3 7.0 24 105-128 69-92 (356)
59 PRK09458 pspB phage shock prot 27.5 82 0.0018 19.8 2.7 23 76-98 6-28 (75)
60 PF12591 DUF3762: Protein of u 27.1 35 0.00075 21.1 1.0 12 9-20 47-58 (80)
61 TIGR00739 yajC preprotein tran 26.5 1.2E+02 0.0025 19.2 3.4 16 116-131 22-37 (84)
62 PF04191 PEMT: Phospholipid me 26.3 1.7E+02 0.0038 18.3 6.0 15 74-88 49-63 (106)
63 PF14490 HHH_4: Helix-hairpin- 26.1 47 0.001 21.2 1.5 22 41-62 17-38 (94)
64 PF06923 GutM: Glucitol operon 25.7 2.1E+02 0.0045 19.0 5.0 29 100-128 5-33 (109)
65 COG3086 RseC Positive regulato 25.6 2.5E+02 0.0055 20.0 8.9 65 60-127 66-130 (150)
66 PF05979 DUF896: Bacterial pro 24.7 85 0.0018 19.1 2.4 13 40-52 15-27 (65)
67 PRK09570 rpoH DNA-directed RNA 24.6 56 0.0012 20.7 1.6 23 43-65 17-39 (79)
68 PRK01631 hypothetical protein; 24.5 88 0.0019 19.7 2.5 13 41-53 17-29 (76)
69 PRK05886 yajC preprotein trans 24.4 2.3E+02 0.0049 19.0 4.6 15 117-131 24-38 (109)
70 PHA03045 IMV membrane protein; 23.6 2.4E+02 0.0053 19.1 4.6 31 99-129 10-40 (113)
71 PF11694 DUF3290: Protein of u 23.5 1.6E+02 0.0034 20.8 3.9 21 98-118 48-68 (149)
72 COG4564 Signal transduction hi 23.2 2E+02 0.0043 23.7 4.8 31 101-131 212-242 (459)
73 PF04679 DNA_ligase_A_C: ATP d 22.7 1.7E+02 0.0037 18.4 3.8 22 42-63 28-49 (97)
74 PF04120 Iron_permease: Low af 22.6 2.7E+02 0.0059 19.3 8.2 26 70-95 6-32 (132)
75 PF00558 Vpu: Vpu protein; In 22.3 1.1E+02 0.0024 19.4 2.7 6 123-128 37-42 (81)
76 PRK02539 hypothetical protein; 22.3 1E+02 0.0022 19.8 2.5 14 41-54 18-31 (85)
77 PF10066 DUF2304: Uncharacteri 22.2 2.2E+02 0.0047 18.8 4.3 13 120-132 90-102 (115)
78 KOG3733|consensus 21.7 3.3E+02 0.0072 23.1 5.9 36 80-115 466-502 (566)
79 PF13964 Kelch_6: Kelch motif 21.7 1.2E+02 0.0025 16.4 2.5 21 9-29 26-46 (50)
80 PF01344 Kelch_1: Kelch motif; 21.6 89 0.0019 16.4 2.0 17 11-27 28-44 (47)
81 COG1422 Predicted membrane pro 21.5 2.5E+02 0.0054 21.0 4.7 13 119-131 71-83 (201)
82 PF00672 HAMP: HAMP domain; I 21.4 93 0.002 17.8 2.1 19 103-121 5-23 (70)
83 PF13587 DJ-1_PfpI_N: N-termin 21.3 93 0.002 16.6 1.9 13 72-84 23-35 (38)
84 TIGR03348 VI_IcmF type VI secr 21.1 4.4E+02 0.0096 24.8 7.3 18 81-98 4-21 (1169)
85 PF14257 DUF4349: Domain of un 20.7 3.8E+02 0.0082 20.2 6.4 31 56-86 202-232 (262)
86 PF11669 WBP-1: WW domain-bind 20.6 2.6E+02 0.0056 18.3 5.2 7 104-110 29-35 (102)
87 PF02009 Rifin_STEVOR: Rifin/s 20.4 1.7E+02 0.0037 23.1 3.9 6 121-126 287-292 (299)
No 1
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.94 E-value=1.2e-25 Score=198.21 Aligned_cols=128 Identities=37% Similarity=0.525 Sum_probs=115.9
Q ss_pred ceEEEEEcceEEEEeCCCCe-eeeccCCCCCcChH---HHh-hcCCCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHHH
Q psy14095 3 QVRVFDCKKLRYVWDPELRH-FYKLCGLGLHISTA---QLH-DARGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVL 77 (132)
Q Consensus 3 ~~r~f~~~~~rY~y~~~~~~-F~~~~~~~~~~~~~---~~~-~~~GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~ 77 (132)
..+||+||+.||+||+++++ |.+++++.++.+.. +.. ...||+++|+++|+++||+|++++|.||+++++++|++
T Consensus 94 ~~~~f~~~~~~y~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~yG~N~i~~~~~s~~~ll~~~~~ 173 (1054)
T TIGR01657 94 EPIYFDFRKQRFSYHEKELKIFSPLPYLFKEKSFGVYSTCAGHSNGLTTGDIAQRKAKYGKNEIEIPVPSFLELLKEEVL 173 (1054)
T ss_pred ceEEEEEEEEEEEEECCCCceEEecccccccccchhhhhhhhhccCCCHHHHHHHHHhcCCCeeecCCCCHHHHHHHHHh
Confidence 47999999999999999996 99999775543222 222 23799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14095 78 NPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYL 130 (132)
Q Consensus 78 ~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~~ 130 (132)
+||+++|++++++|++++||.|++++++++++++.+.++++||+.++|++|..
T Consensus 174 ~p~~i~~i~~~~l~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~ 226 (1054)
T TIGR01657 174 HPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH 226 (1054)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999864
No 2
>KOG0208|consensus
Probab=99.91 E-value=1.2e-24 Score=186.04 Aligned_cols=129 Identities=39% Similarity=0.513 Sum_probs=115.1
Q ss_pred CceEEEEEcceEEEEeCC-CCeeeec---cCCCCCcChHHHhh-cCCCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHH
Q psy14095 2 DQVRVFDCKKLRYVWDPE-LRHFYKL---CGLGLHISTAQLHD-ARGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEV 76 (132)
Q Consensus 2 ~~~r~f~~~~~rY~y~~~-~~~F~~~---~~~~~~~~~~~~~~-~~GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~ 76 (132)
+.+|+|.|++.+|.|.++ ...|.|. +..+....+++.+. ++||+.+++..|+..||+|.+++++||+++++++|+
T Consensus 114 ~~~r~~~~kkl~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~gL~~~~~~~r~~iyG~N~i~l~ik~i~~iLv~Ev 193 (1140)
T KOG0208|consen 114 GRVRDFAYKKLEYDPVSELRFIWPPFQKAEFRDDPRWYSTESYVSNGLERQEIIDRRIIYGRNVISLPIKSISQILVKEV 193 (1140)
T ss_pred chhhhhhhhcceeccccccceeeccccchhhccchhhhccceeccCCccHHHHHhHHhhcCCceeeeecccHHHHHHHhc
Confidence 458999999999999986 5556653 23344555655553 489999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14095 77 LNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYL 130 (132)
Q Consensus 77 ~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~~ 130 (132)
.||||+||+||+++|+.|+|++||++|+++++.|+..+++|+|++.++||+|++
T Consensus 194 L~PfYlFQ~fSv~lW~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~ 247 (1140)
T KOG0208|consen 194 LNPFYLFQAFSVALWLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVK 247 (1140)
T ss_pred cchHHHHHhHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999986
No 3
>KOG0209|consensus
Probab=99.89 E-value=9.4e-23 Score=172.39 Aligned_cols=126 Identities=24% Similarity=0.345 Sum_probs=115.1
Q ss_pred eEEEEEcceEEEEeCCCCeeeeccCCCCCcChHHHhhcCCCCHH-HHHHHHhhccCCeeeccCCCHHHHHHHHHHhHHHH
Q psy14095 4 VRVFDCKKLRYVWDPELRHFYKLCGLGLHISTAQLHDARGLTSV-QQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYV 82 (132)
Q Consensus 4 ~r~f~~~~~rY~y~~~~~~F~~~~~~~~~~~~~~~~~~~GLs~~-e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf~i 82 (132)
--+|+||+.||+||++++.|.++.++-+ .++..+++..|+..+ |+....++||+|+.++++|+|.+++.+.-..||++
T Consensus 124 q~~F~Fqk~ry~~~~e~~~F~~~~fp~~-~~~g~~~k~~G~~~~~~i~~a~~~~G~N~fdi~vPtF~eLFkE~A~aPfFV 202 (1160)
T KOG0209|consen 124 QYFFEFQKKRYLYDEEKGKFSRLTFPTD-EPFGYFQKSTGHEEESEIKLAKHKYGKNKFDIVVPTFSELFKEHAVAPFFV 202 (1160)
T ss_pred EEEEEEEEeeEEEcccccceeccccCcC-CcchhhhhccCcchHHHHHHHHHHhcCCccccCCccHHHHHHHhccCceee
Confidence 4689999999999999999999986544 599999988888865 44455667999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14095 83 FQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYL 130 (132)
Q Consensus 83 ~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~~ 130 (132)
||+||+.+|.+|+||+|++..++|++.-....++|+.|++.++|+|..
T Consensus 203 FQVFcvgLWCLDeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~ 250 (1160)
T KOG0209|consen 203 FQVFCVGLWCLDEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGN 250 (1160)
T ss_pred HhHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999864
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.54 E-value=5.7e-14 Score=124.55 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRK 120 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k 120 (132)
.|||++||++|+++||+|+++.++ +|+++++++++.+|+.+++++++++|++.+.|..+++|++++++++++.++|++|
T Consensus 25 ~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~~iIl~vv~in~~i~~~QE~~ 104 (1053)
T TIGR01523 25 EGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEGGVISAIIALNILIGFIQEYK 104 (1053)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 599999999999999999998877 5999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhh
Q psy14095 121 RLMNPLSM 128 (132)
Q Consensus 121 ~~~~L~~m 128 (132)
+.++++++
T Consensus 105 aekal~aL 112 (1053)
T TIGR01523 105 AEKTMDSL 112 (1053)
T ss_pred HHHHHHHH
Confidence 76644443
No 5
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.53 E-value=9.9e-14 Score=121.50 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRK 120 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k 120 (132)
.|||++|+++|+++||+|+++.+++ |+|+++++++.+||++++++++++.++.+-+..+++|+++++++.++.++|++|
T Consensus 66 ~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~a~~I~~iv~i~~~i~~~qe~r 145 (902)
T PRK10517 66 EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEAR 145 (902)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999998886 899999999999999888777655545455667889999999999999999998
Q ss_pred HHHHHHhh
Q psy14095 121 RLMNPLSM 128 (132)
Q Consensus 121 ~~~~L~~m 128 (132)
+.+.++++
T Consensus 146 a~~~~~~L 153 (902)
T PRK10517 146 STKAADAL 153 (902)
T ss_pred HHHHHHHH
Confidence 87544443
No 6
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.52 E-value=1.3e-13 Score=120.39 Aligned_cols=88 Identities=24% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRK 120 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k 120 (132)
.|||++|+++|+++||+|+++.+++ |+++.+++++.+||.+++++++++|++.+.+..+++|++++++++.+.++|++|
T Consensus 32 ~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~~~iI~~iv~~~~~i~~~~e~~ 111 (867)
T TIGR01524 32 TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEATVIIALMVLASGLLGFIQESR 111 (867)
T ss_pred CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6999999999999999999988875 899999999999999999999999998888999999999999999999999987
Q ss_pred HHH---HHHhhh
Q psy14095 121 RLM---NPLSMY 129 (132)
Q Consensus 121 ~~~---~L~~m~ 129 (132)
+.+ +|+++.
T Consensus 112 a~ka~~~L~~l~ 123 (867)
T TIGR01524 112 AERAAYALKNMV 123 (867)
T ss_pred HHHHHHHHhhhc
Confidence 754 555543
No 7
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.48 E-value=4.6e-13 Score=117.37 Aligned_cols=95 Identities=25% Similarity=0.221 Sum_probs=79.5
Q ss_pred hHHHhhc-CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH-----------HHHH
Q psy14095 35 TAQLHDA-RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADDYT-----------SYAM 101 (132)
Q Consensus 35 ~~~~~~~-~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~-----------~~a~ 101 (132)
+.++... .|||++|+++|+++||+|++..++ +++++.++++|.+||.++++++++++++.+++ .-++
T Consensus 36 ~~~l~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~ 115 (903)
T PRK15122 36 LANLNTHRQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVI 115 (903)
T ss_pred HHHhCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHH
Confidence 3444443 699999999999999999998877 58999999999999999999998888877653 4688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhhh
Q psy14095 102 AIAAMSVFSITGAIIQTRKRLM---NPLSMY 129 (132)
Q Consensus 102 ii~~~~i~s~~~~~~~~~k~~~---~L~~m~ 129 (132)
+++++++++.++.++|++++.+ +|++|.
T Consensus 116 iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~ 146 (903)
T PRK15122 116 IILTMVLLSGLLRFWQEFRSNKAAEALKAMV 146 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999997755 555543
No 8
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.47 E-value=3.7e-13 Score=117.73 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=82.3
Q ss_pred hHHHhhc--CCCC-HHHHHHHHhhccCCeeeccC-CCHHHHHHHHH-HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy14095 35 TAQLHDA--RGLT-SVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEV-LNPFYVFQLFSFALWFADDYTSYAMAIAAMSVF 109 (132)
Q Consensus 35 ~~~~~~~--~GLs-~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~-~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~ 109 (132)
++.++.. .||| ++|+++|+++||+|+++.|. +|+++++++++ .+|+.++++++++++++.+.|..++++++++++
T Consensus 13 ~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~~~~~i~~~i~~ 92 (884)
T TIGR01522 13 CSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNIDDAVSITLAILI 92 (884)
T ss_pred HHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchhhHHHHHhHHHH
Confidence 4444433 6999 89999999999999999887 59999999999 899999999999998888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy14095 110 SITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 110 s~~~~~~~~~k~~~~L~~m~ 129 (132)
++.+.++|++++.+.++++.
T Consensus 93 ~~~i~~~qe~~a~~~l~~L~ 112 (884)
T TIGR01522 93 VVTVGFVQEYRSEKSLEALN 112 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999998877666654
No 9
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.41 E-value=5.4e-13 Score=82.80 Aligned_cols=57 Identities=30% Similarity=0.484 Sum_probs=48.6
Q ss_pred hHHHh-hc-CCCCHHHHHHHHhhccCCeee-ccCCCHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14095 35 TAQLH-DA-RGLTSVQQYLRRVVYGKNEIA-VPMKSIFSLLFLEVLNPFYVFQLFSFALW 91 (132)
Q Consensus 35 ~~~~~-~~-~GLs~~e~~~r~~~yG~N~i~-i~~~s~~~ll~~e~~~Pf~i~qi~~~~lw 91 (132)
+..++ +. .||+++||++|+++||+|++. .+.+|+++.+++++.+||.++++++++++
T Consensus 10 ~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 10 LKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp HHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 44454 22 899999999999999999995 55579999999999999999999988764
No 10
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.40 E-value=1.6e-12 Score=112.14 Aligned_cols=86 Identities=20% Similarity=0.099 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 43 GLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRL 122 (132)
Q Consensus 43 GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~ 122 (132)
|||++|+++|+++||+|++..+.++.+.++++++.+|+.+.+.+++++.++.+.|.-++++++++++++.+.++|++++.
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~ 80 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDFVIILGLLLLNATIGFIEENKAG 80 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999998877889999999999999877766666655555666688888999999999999999887
Q ss_pred HHHHhh
Q psy14095 123 MNPLSM 128 (132)
Q Consensus 123 ~~L~~m 128 (132)
+.++++
T Consensus 81 ~~~~~L 86 (755)
T TIGR01647 81 NAVEAL 86 (755)
T ss_pred HHHHHH
Confidence 655554
No 11
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.38 E-value=3.5e-12 Score=112.83 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHH-Hhhh------------hHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFAL-WFAD------------DYTSYAMAIAAMS 107 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~l-w~~~------------~y~~~a~ii~~~~ 107 (132)
.|||++||++|+++||+|++..+++ ++|+++++++++||.+.+++++++ ++.. +++..++++++++
T Consensus 35 ~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv 114 (997)
T TIGR01106 35 KGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVV 114 (997)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Confidence 5999999999999999999987764 899999999999998888777766 4432 3567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14095 108 VFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 108 i~s~~~~~~~~~k~~~~L~~m 128 (132)
++++++.++|++|+.+.++++
T Consensus 115 ~i~~~i~~~qe~ka~~~l~~l 135 (997)
T TIGR01106 115 IITGCFSYYQEAKSSKIMESF 135 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887766554
No 12
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.35 E-value=3.1e-12 Score=78.08 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFAD 94 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~ 94 (132)
.||+++|+++|+++||+|++..+. +|+++++++++.+|+.++++++++++++.
T Consensus 9 ~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~ 62 (64)
T smart00831 9 SGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALL 62 (64)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 599999999999999999998776 79999999999999999999888877654
No 13
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.34 E-value=1.1e-11 Score=109.07 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=76.8
Q ss_pred CCCC--HHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhh-------------HHHHHHHHHH
Q psy14095 42 RGLT--SVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFALWFADD-------------YTSYAMAIAA 105 (132)
Q Consensus 42 ~GLs--~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~-------------y~~~a~ii~~ 105 (132)
.||| ++||++|+++||+|++..|++ |+++++++++.+|+.++++++++++++.+ .|..++++++
T Consensus 57 ~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~ 136 (941)
T TIGR01517 57 EGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILV 136 (941)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHHHHHHHH
Confidence 5999 999999999999999998875 99999999999999998888888887754 5677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 106 MSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 106 ~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
+++++++++++++.++.++++++-
T Consensus 137 ~v~~~~~i~~~~e~~~~~~~~~l~ 160 (941)
T TIGR01517 137 SVILVVLVTAVNDYKKELQFRQLN 160 (941)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 899999999999998877666543
No 14
>KOG0202|consensus
Probab=99.25 E-value=2e-12 Score=110.53 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=84.8
Q ss_pred hHHHhhc--CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy14095 35 TAQLHDA--RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSI 111 (132)
Q Consensus 35 ~~~~~~~--~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~ 111 (132)
++++... +||+.+|+..|+++||.|++..+. +|+|+++++||.+|+..+++.++++.+....+.-++.|.+++++++
T Consensus 13 ~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~vI~liiv~nv 92 (972)
T KOG0202|consen 13 LAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPFVITLIIVINV 92 (972)
T ss_pred HHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccceeeeeeeeeee
Confidence 3444433 799999999999999999998777 6999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHH---HHHhhhhh
Q psy14095 112 TGAIIQTRKRLM---NPLSMYLE 131 (132)
Q Consensus 112 ~~~~~~~~k~~~---~L~~m~~~ 131 (132)
+..++|||++.+ +|++++++
T Consensus 93 tVG~~QEy~aEkalEaLk~l~p~ 115 (972)
T KOG0202|consen 93 TVGFVQEYNAEKALEALKELVPP 115 (972)
T ss_pred eeeeeeehhhHHHHHHHHhcCCc
Confidence 999999997655 66666543
No 15
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.8e-09 Score=93.13 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADDYT----SYAMAIAAMSVFSITGAII 116 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~----~~a~ii~~~~i~s~~~~~~ 116 (132)
.||+++|+.+|++.||.|++..++ .+++..++.++.+||..+++.++++.++.+.+ .++.+++.++++++++.++
T Consensus 43 ~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~~~~~~I~~~i~~n~~~g~~ 122 (917)
T COG0474 43 TGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVDAIVILLVVVINALLGFV 122 (917)
T ss_pred cCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcceeeehHHHHHHHHHHHH
Confidence 799999999999999999998666 59999999999999999888888888777777 6777899999999999999
Q ss_pred HHHHHH---HHHHhhh
Q psy14095 117 QTRKRL---MNPLSMY 129 (132)
Q Consensus 117 ~~~k~~---~~L~~m~ 129 (132)
|+.|+. ++|++|.
T Consensus 123 qe~~a~~~l~~lk~~~ 138 (917)
T COG0474 123 QEYRAEKALEALKKMS 138 (917)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 999884 5666654
No 16
>KOG0205|consensus
Probab=97.85 E-value=6.7e-06 Score=69.96 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=67.7
Q ss_pred cChHHHhhc-CCCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHHHhHH-HHHHHHHHHHHhhh-------hHHHHHHHH
Q psy14095 33 ISTAQLHDA-RGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPF-YVFQLFSFALWFAD-------DYTSYAMAI 103 (132)
Q Consensus 33 ~~~~~~~~~-~GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf-~i~qi~~~~lw~~~-------~y~~~a~ii 103 (132)
.-+.++.+. .||+++|+++|+++||+|.++.++.+-+..|+-=+-+|. ++.+..++.-..+- ++.. ...|
T Consensus 25 eVfeeL~~t~~GLt~~E~~eRlk~fG~NkleEkken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~DW~D-F~gI 103 (942)
T KOG0205|consen 25 EVFEELLCTREGLTSDEVEERLKIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPPDWQD-FVGI 103 (942)
T ss_pred hhHHHHhcCCCCCchHHHHHHHHhhCchhhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCcchhh-hhhh
Confidence 355666655 899999999999999999999888899999999999999 56666665333333 3344 4445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14095 104 AAMSVFSITGAIIQTRKR 121 (132)
Q Consensus 104 ~~~~i~s~~~~~~~~~k~ 121 (132)
.++.+++.+++++||..+
T Consensus 104 ~~LLliNsti~FveE~nA 121 (942)
T KOG0205|consen 104 CCLLLINSTISFIEENNA 121 (942)
T ss_pred heeeeecceeeeeecccc
Confidence 667778888899999754
No 17
>KOG0204|consensus
Probab=97.75 E-value=9e-06 Score=70.71 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCCCH--HHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q psy14095 42 RGLTS--VQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADDY 96 (132)
Q Consensus 42 ~GLs~--~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y 96 (132)
.|++. +|...|++.||.|.+..++ ++|+++.++.+.+.-.+.+.+|+++.+..+.
T Consensus 116 ~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi 173 (1034)
T KOG0204|consen 116 EGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGI 173 (1034)
T ss_pred cCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhh
Confidence 57766 7888999999999997666 6999999999999998888888887766544
No 18
>KOG0203|consensus
Probab=97.11 E-value=0.00011 Score=63.99 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred CcChHHHhhc------CCCCHHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH-------
Q psy14095 32 HISTAQLHDA------RGLTSVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFALWFADDYT------- 97 (132)
Q Consensus 32 ~~~~~~~~~~------~GLs~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~------- 97 (132)
.+++.++..+ +||+.++|.++++.-|+|....|++ +-|..+.+++++-|.++.-.++++-++.-+.
T Consensus 41 ~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~ 120 (1019)
T KOG0203|consen 41 KLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDD 120 (1019)
T ss_pred cCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 4566666532 7999999999999999999999986 8899999999999987777666554443111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q psy14095 98 ------SYAMAIAAMSVFSITGAIIQTRKRLM---NPLSMYL 130 (132)
Q Consensus 98 ------~~a~ii~~~~i~s~~~~~~~~~k~~~---~L~~m~~ 130 (132)
+.++++..++++.++..++|+.|+.+ +.++|++
T Consensus 121 ~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P 162 (1019)
T KOG0203|consen 121 PSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVP 162 (1019)
T ss_pred CCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccch
Confidence 12556667788888899999998754 5666553
No 19
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.65 E-value=0.0069 Score=54.03 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 72 LFLEVLNPFYVFQLFSFALWFADD----------YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 72 l~~e~~~Pf~i~qi~~~~lw~~~~----------y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
++++|.+|+.+.+++++++.++.+ -|.-+++|++++++++.+.++|++|+.+.++++.
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~ 68 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALK 68 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999998888887776653 3557899999999999999999998887666654
No 20
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=92.97 E-value=0.56 Score=42.73 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=50.8
Q ss_pred ccCCeeeccCCCH----HHHHHHHHHhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 56 YGKNEIAVPMKSI----FSLLFLEVLNPFYVFQLFSFALWFAD-----DYTSYAMAIAAMSVFSITGAIIQTRKRLMNPL 126 (132)
Q Consensus 56 yG~N~i~i~~~s~----~~ll~~e~~~Pf~i~qi~~~~lw~~~-----~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~ 126 (132)
|..|.+...+-++ ++.+++||..|++++-++.+++-++- +...+.+-++++++++++...+|+++..++=+
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~ 80 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK 80 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5679998777544 69999999999988777776665442 23444555556666888899999987655433
Q ss_pred h
Q psy14095 127 S 127 (132)
Q Consensus 127 ~ 127 (132)
+
T Consensus 81 ~ 81 (1057)
T TIGR01652 81 E 81 (1057)
T ss_pred H
Confidence 3
No 21
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=87.60 E-value=3.6 Score=35.97 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=35.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHhhh
Q psy14095 74 LEVLNPFYVFQLFSFALWFADDYT-----------SYAMAIAAMSVFSITGAIIQ----TRKRL---MNPLSMY 129 (132)
Q Consensus 74 ~e~~~Pf~i~qi~~~~lw~~~~y~-----------~~a~ii~~~~i~s~~~~~~~----~~k~~---~~L~~m~ 129 (132)
..+.+|+.+...+++++.+..+.+ .|++.++++++++.++..++ ++|+. ++|+++.
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~ 101 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQ 101 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 357899976666666555443333 35777888888888877777 45554 4555554
No 22
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=85.98 E-value=3.9 Score=34.58 Aligned_cols=45 Identities=4% Similarity=-0.135 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 85 LFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 85 i~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
..+++++++.+.+..+.+++++++++..+..++++|+.++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~ 50 (556)
T TIGR01525 6 ALATIAAYAMGLVLEGALLLFLFLLGETLEERAKGRASDALSALL 50 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566778899999999999999999999998888765
No 23
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=85.00 E-value=4.4 Score=34.18 Aligned_cols=42 Identities=5% Similarity=-0.065 Sum_probs=30.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 87 SFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 87 ~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
+++.|.+.+| ..+.+++++++++..+..++++|+.++++++.
T Consensus 9 ~~~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~ 50 (536)
T TIGR01512 9 ALGAVAIGEY-LEGALLLLLFSIGETLEEYASGRARRALKALM 50 (536)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544 55677778888899999999999988777765
No 24
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=83.85 E-value=7.7 Score=34.02 Aligned_cols=56 Identities=7% Similarity=-0.030 Sum_probs=32.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhh
Q psy14095 74 LEVLNPFYVFQLFSFALWFADDY--------------TSYAMAIAAMSVFSITGAIIQTRKRLM---NPLSMY 129 (132)
Q Consensus 74 ~e~~~Pf~i~qi~~~~lw~~~~y--------------~~~a~ii~~~~i~s~~~~~~~~~k~~~---~L~~m~ 129 (132)
.++++|+.+....++++.++.+. +.-++++++.++++.....+++.|+.+ +|+++.
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~ 101 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAK 101 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47889997777666665544331 222344444455555556677766654 555543
No 25
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=75.91 E-value=19 Score=31.59 Aligned_cols=55 Identities=9% Similarity=-0.040 Sum_probs=30.6
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhH-------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14095 74 LEVLNPFYVFQLFSFALWFADDY-------------TSY---AMAIAAMSVFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 74 ~e~~~Pf~i~qi~~~~lw~~~~y-------------~~~---a~ii~~~~i~s~~~~~~~~~k~~~~L~~m 128 (132)
.++.+|..+....++++.+..+. |.. ++++++.++++.....++++|+.++++++
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L 98 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSL 98 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789997766666655444321 111 23344445666666667777665544433
No 26
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=62.78 E-value=7.8 Score=19.68 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.3
Q ss_pred hcCCCCHHHHHHHHhh
Q psy14095 40 DARGLTSVQQYLRRVV 55 (132)
Q Consensus 40 ~~~GLs~~e~~~r~~~ 55 (132)
...|||.+|+.+|++.
T Consensus 12 ~eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 12 KEHGLSEEEVAERLAA 27 (28)
T ss_pred HhcCCCHHHHHHHHHc
Confidence 3479999999999864
No 27
>COG1836 Predicted membrane protein [Function unknown]
Probab=57.41 E-value=32 Score=26.43 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14095 85 LFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLS 127 (132)
Q Consensus 85 i~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~ 127 (132)
+...++|...++..+..+..+..+-+...++.+++|....+++
T Consensus 43 ~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE 85 (247)
T COG1836 43 LLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAE 85 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3455778888888888888888899999999999887665544
No 28
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=50.55 E-value=18 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=22.2
Q ss_pred hhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy14095 54 VVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFA 93 (132)
Q Consensus 54 ~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~ 93 (132)
+.||.|...-+. ++||..+++=+.=-+.+.-++++..|+.
T Consensus 8 ~q~~~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~ 48 (65)
T PF12534_consen 8 QQYSENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLT 48 (65)
T ss_pred HHHHhhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 345555554444 5777776665555555555555555553
No 29
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=43.37 E-value=19 Score=24.82 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=15.5
Q ss_pred HhhcCCCCHHHHHHHHhhccCCe
Q psy14095 38 LHDARGLTSVQQYLRRVVYGKNE 60 (132)
Q Consensus 38 ~~~~~GLs~~e~~~r~~~yG~N~ 60 (132)
+...+||+++|+++.++.-|...
T Consensus 29 FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 29 FLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHcCCCCHHHHHHHHHhcCCcc
Confidence 34568999999999888888777
No 30
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=41.23 E-value=29 Score=18.95 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=18.3
Q ss_pred CCcChHHHhhcCCCCHHHHHHHHhh
Q psy14095 31 LHISTAQLHDARGLTSVQQYLRRVV 55 (132)
Q Consensus 31 ~~~~~~~~~~~~GLs~~e~~~r~~~ 55 (132)
...++.++...-|+|..++.+|.++
T Consensus 16 ~r~s~~~la~~lglS~~~v~~Ri~r 40 (42)
T PF13404_consen 16 GRRSYAELAEELGLSESTVRRRIRR 40 (42)
T ss_dssp TTS-HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHH
Confidence 3467888888889999999988653
No 31
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.68 E-value=76 Score=18.57 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhh
Q psy14095 120 KRLMNPLSMYLE 131 (132)
Q Consensus 120 k~~~~L~~m~~~ 131 (132)
+..++++++-++
T Consensus 52 ~~~k~l~~le~e 63 (68)
T PF06305_consen 52 RLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 32
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=39.95 E-value=68 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy14095 112 TGAIIQTRKRLMNPLSMYLE 131 (132)
Q Consensus 112 ~~~~~~~~k~~~~L~~m~~~ 131 (132)
++.....+|..++.++|..+
T Consensus 17 f~~~rpqkk~~k~~~~m~~~ 36 (82)
T PF02699_consen 17 FLMIRPQKKQQKEHQEMLAS 36 (82)
T ss_dssp HHTHHHHHHHHHHHTTGGG-
T ss_pred hheecHHHHHHHHHHHHHHc
Confidence 33445556667777777654
No 33
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=39.40 E-value=1.8e+02 Score=25.83 Aligned_cols=32 Identities=3% Similarity=-0.108 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 98 SYAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 98 ~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
.-+.++++++.++..+..++++|+.+.++++.
T Consensus 207 ~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~ 238 (741)
T PRK11033 207 AEAAMVLLLFLIGERLEGYAASRARRGVSALM 238 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777788888888887776665553
No 34
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=39.32 E-value=1.3e+02 Score=20.70 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHhhccCCeeeccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPMK-SIFSLLFLEVLNPFYVFQLFSFALWFADDYTS 98 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~~-s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~ 98 (132)
+=+|++++++.++.|+.. |.+ + ......--+=...+.+.+++++...|.
T Consensus 8 GlI~~~q~~~i~~~~~~~----~~~~~----~~~~~l~~lGall~~~gii~fvA~nW~ 57 (145)
T PF09925_consen 8 GLITPEQAEAILAFYGER----PSRSS----WLARILLYLGALLLGLGIILFVAANWD 57 (145)
T ss_pred CCCCHHHHHHHHHHhhcc----ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888888899999921 222 3 222222223234555556666655544
No 35
>PHA02677 hypothetical protein; Provisional
Probab=39.05 E-value=87 Score=20.93 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 99 YAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 99 ~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
|.++|+=+++.++.=...+|+.+..+++++-
T Consensus 10 YFILIFNIiVP~I~EKlR~E~~Af~ky~~l~ 40 (108)
T PHA02677 10 YFVLIFNILVPGIFEKLRQEHAAFDRLANAG 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566777888888889999998888887763
No 36
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=38.22 E-value=2.8e+02 Score=24.32 Aligned_cols=71 Identities=7% Similarity=0.063 Sum_probs=38.9
Q ss_pred HHHHHHHhhccC-CeeeccCCCHHHHH---HHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 47 VQQYLRRVVYGK-NEIAVPMKSIFSLL---FLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRL 122 (132)
Q Consensus 47 ~e~~~r~~~yG~-N~i~i~~~s~~~ll---~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~ 122 (132)
++.+...+++|+ +.. ....+.-+.. .++...-...+.++++ -++++.++.+.+.....+++||..
T Consensus 536 ~~l~~~l~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~i~~i----------i~ili~l~~i~~~~~~~~~~~rke 604 (679)
T TIGR01654 536 QALLPLLKKYLLDGNI-SHLSSVNDIVQEDIDEIQDALTNLNILFI----------LFALISLSIIYFLVVLYFEQHRKK 604 (679)
T ss_pred HHHHHHHHHcCCcccc-ceeeeHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888 432 2223333333 3333333332222222 244555666777788888888777
Q ss_pred HHHHhh
Q psy14095 123 MNPLSM 128 (132)
Q Consensus 123 ~~L~~m 128 (132)
-++|++
T Consensus 605 IaIRkv 610 (679)
T TIGR01654 605 ILIKRL 610 (679)
T ss_pred hHHHHH
Confidence 666664
No 37
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=38.19 E-value=1.6e+02 Score=27.83 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q psy14095 81 YVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKR-LMNPLSMY 129 (132)
Q Consensus 81 ~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~-~~~L~~m~ 129 (132)
.++.+.+++.|++. |..+++..+++++++.+..+-+..+. .+.+|+.+
T Consensus 159 ~i~l~~~v~Swifg-~~~fs~~slffii~~~~~vY~~~~~rv~rnird~v 207 (1227)
T COG5038 159 AIVLIGSVASWIFG-YLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLV 207 (1227)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777766 66666666666666665555554332 33444443
No 38
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=36.68 E-value=1.4e+02 Score=20.55 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.0
Q ss_pred CCCCHHHHHH-HHhhccCCeeeccC
Q psy14095 42 RGLTSVQQYL-RRVVYGKNEIAVPM 65 (132)
Q Consensus 42 ~GLs~~e~~~-r~~~yG~N~i~i~~ 65 (132)
.|-|++|+.. ..+.||.=.+--|.
T Consensus 72 ~G~Sd~eI~~~~v~RYG~~Vly~Pp 96 (126)
T TIGR03147 72 EGKSNQQIIDFMTARFGDFVLYNPP 96 (126)
T ss_pred cCCCHHHHHHHHHHhcCCeEEecCC
Confidence 7999999876 79999988885555
No 39
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=35.71 E-value=40 Score=20.97 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=19.8
Q ss_pred CCCCcChHHHhhcCCCCHHHHHHH
Q psy14095 29 LGLHISTAQLHDARGLTSVQQYLR 52 (132)
Q Consensus 29 ~~~~~~~~~~~~~~GLs~~e~~~r 52 (132)
+.+..||+.+....||++.|+...
T Consensus 10 weDRtpFeaI~~~fGL~E~eVi~l 33 (72)
T TIGR03643 10 WEDRTPFEAIEQQFGLSEKEVIKL 33 (72)
T ss_pred HccCCCHHHHHHHHCCCHHHHHHH
Confidence 455678999998999999998763
No 40
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=34.61 E-value=37 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHhhccCCee
Q psy14095 42 RGLTSVQQYLRRVVYGKNEI 61 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i 61 (132)
.|++.+++...-++||.|.|
T Consensus 54 ~~i~~~~A~~Lg~~f~QnAI 73 (73)
T PF11697_consen 54 LGISLEEAIALGRKFGQNAI 73 (73)
T ss_pred cCCCHHHHHHHHHHhCcCcC
Confidence 59999999999999999975
No 41
>PF14981 FAM165: FAM165 family
Probab=34.41 E-value=92 Score=17.72 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 100 AMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 100 a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
|.-.+++-+..+....+|.++-..++++.-
T Consensus 14 aaKtlilClaFAgvK~yQ~krlEak~~k~~ 43 (51)
T PF14981_consen 14 AAKTLILCLAFAGVKMYQRKRLEAKLKKLE 43 (51)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444455555667788999998887777653
No 42
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=34.33 E-value=43 Score=20.90 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=19.8
Q ss_pred CCCCcChHHHhhcCCCCHHHHHHH
Q psy14095 29 LGLHISTAQLHDARGLTSVQQYLR 52 (132)
Q Consensus 29 ~~~~~~~~~~~~~~GLs~~e~~~r 52 (132)
+.+..||+.+....||++.|+.+.
T Consensus 9 weDRtpFeaI~~qfGl~E~eVi~l 32 (73)
T PF10985_consen 9 WEDRTPFEAIERQFGLSEKEVIKL 32 (73)
T ss_pred HccCCCHHHHHHHHCCCHHHHHHH
Confidence 455678999998899999998764
No 43
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=33.25 E-value=63 Score=19.78 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=19.5
Q ss_pred CcChHHHhhcCCCCHHHHHHHHhhcc
Q psy14095 32 HISTAQLHDARGLTSVQQYLRRVVYG 57 (132)
Q Consensus 32 ~~~~~~~~~~~GLs~~e~~~r~~~yG 57 (132)
|.+.+++.+.-||+..||+.....+|
T Consensus 44 Ga~~~el~~~CgL~~aEAeLl~~Lh~ 69 (70)
T PF10975_consen 44 GASVEELMEECGLSRAEAELLLSLHR 69 (70)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhc
Confidence 55667777778899999887766655
No 44
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=33.25 E-value=46 Score=18.85 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14095 78 NPFYVFQLFSFALWFADDYTSYAMAIA 104 (132)
Q Consensus 78 ~Pf~i~qi~~~~lw~~~~y~~~a~ii~ 104 (132)
+|..+.....+-+....+|..|..+=.
T Consensus 1 TPiLviL~g~vGLsa~vgyLDyvL~Pa 27 (46)
T PF11431_consen 1 TPILVILFGAVGLSALVGYLDYVLLPA 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHSHTTTSTTTT
T ss_pred CceehHHHHHhHHHHHHHHHHHHHHHH
Confidence 366666666666665666666644333
No 45
>PTZ00370 STEVOR; Provisional
Probab=32.98 E-value=1.2e+02 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 93 ADDYTSYAMAIAAMSVFSITGAIIQTRKR 121 (132)
Q Consensus 93 ~~~y~~~a~ii~~~~i~s~~~~~~~~~k~ 121 (132)
+..|-..|+++++++++-+++-+|-.||.
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555555565566666666543
No 46
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=32.21 E-value=42 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=16.4
Q ss_pred CCCCHHHHHH-HHhhccCCeeeccCC
Q psy14095 42 RGLTSVQQYL-RRVVYGKNEIAVPMK 66 (132)
Q Consensus 42 ~GLs~~e~~~-r~~~yG~N~i~i~~~ 66 (132)
.|.|++|+.+ ..+.||.=.+-.|..
T Consensus 72 ~G~s~~eI~~~~v~rYG~~Vl~~Pp~ 97 (148)
T PF03918_consen 72 EGKSDEEIIDYFVERYGEFVLYEPPF 97 (148)
T ss_dssp HT--HHHHHHHHHHHHTTT-EES--S
T ss_pred cCCCHHHHHHHHHHhcCcceeecCCC
Confidence 7999999876 699999877765553
No 47
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=32.18 E-value=45 Score=18.63 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM 65 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~ 65 (132)
..||++|..+.+..||-+...|..
T Consensus 4 ~~LSd~eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 4 DRLSDAELRAELKQYGLPPGPITD 27 (44)
T ss_pred hHcCHHHHHHHHHHcCCCCCCcCc
Confidence 368999999999999988865543
No 48
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.03 E-value=80 Score=19.74 Aligned_cols=21 Identities=29% Similarity=0.747 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHH
Q psy14095 77 LNPFYVFQLFSFALWFADDYT 97 (132)
Q Consensus 77 ~~Pf~i~qi~~~~lw~~~~y~ 97 (132)
.-|+.+|.+|.+.+|++..|.
T Consensus 7 ~~plivf~ifVap~WL~lHY~ 27 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666777666554
No 49
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=13 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=29.9
Q ss_pred CeeeeccCCCCCcChHHHhhcCCCCHHHHHH--HHhhccCC
Q psy14095 21 RHFYKLCGLGLHISTAQLHDARGLTSVQQYL--RRVVYGKN 59 (132)
Q Consensus 21 ~~F~~~~~~~~~~~~~~~~~~~GLs~~e~~~--r~~~yG~N 59 (132)
+||...+.+.++.|+.+++...|-|...+.+ |-..||.-
T Consensus 45 qRlqVa~mL~eg~tY~~I~~eTGaStaTIsRVkRcl~yGnd 85 (100)
T COG4496 45 QRLQVAKMLKEGRTYRDIEDETGASTATISRVKRCLNYGND 85 (100)
T ss_pred HHHHHHHHHHcCCCcchhhhccCcchhhHHHHHHHHHcCCc
Confidence 4556566667889999999989999887653 77788853
No 50
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.16 E-value=84 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHhhhhHH
Q psy14095 77 LNPFYVFQLFSFALWFADDYT 97 (132)
Q Consensus 77 ~~Pf~i~qi~~~~lw~~~~y~ 97 (132)
.-|..+|.+|.+.+|++..|.
T Consensus 7 ~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777766654
No 51
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=29.88 E-value=1.4e+02 Score=19.77 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy14095 115 IIQTRKRLMNPLSMYLE 131 (132)
Q Consensus 115 ~~~~~k~~~~L~~m~~~ 131 (132)
+...+|..++.++|..+
T Consensus 36 ~RpqkK~~k~~~~~~~~ 52 (106)
T PRK05585 36 IRPQQKRQKEHKKMLSS 52 (106)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 34455666666766654
No 52
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=29.52 E-value=2.2e+02 Score=20.64 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14095 105 AMSVFSITGAIIQTRKRLMNP 125 (132)
Q Consensus 105 ~~~i~s~~~~~~~~~k~~~~L 125 (132)
+++++.++=.++--|+-.+.+
T Consensus 110 ~~~~~~iid~~~l~r~vkk~v 130 (170)
T PF11241_consen 110 VLLLLVIIDGVILGRRVKKRV 130 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445444433
No 53
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.43 E-value=1.1e+02 Score=17.22 Aligned_cols=21 Identities=24% Similarity=0.010 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14095 100 AMAIAAMSVFSITGAIIQTRK 120 (132)
Q Consensus 100 a~ii~~~~i~s~~~~~~~~~k 120 (132)
+++|++-++.=..++++|..+
T Consensus 10 svvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 10 SVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555543
No 54
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=29.43 E-value=1.7e+02 Score=19.38 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 74 LEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRL 122 (132)
Q Consensus 74 ~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~ 122 (132)
-.+..||.++-+.....-..+.-. ..-.++++.++.++..++|.|++.
T Consensus 36 ~D~~~~fli~~i~~ls~~~~~~s~-lpy~~l~~~ll~i~l~~~~~~~~~ 83 (116)
T PF11877_consen 36 PDVTTPFLIFSIHLLSNNIFGHSF-LPYLLLVLLLLAIILAIYQARKKG 83 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666665444433222222211 123445666667777788888764
No 55
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.38 E-value=1.4e+02 Score=19.63 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhhh
Q psy14095 116 IQTRKRLMNPLSMYLE 131 (132)
Q Consensus 116 ~~~~k~~~~L~~m~~~ 131 (132)
...||.+++-++|..+
T Consensus 28 RPQrKr~K~~~~ml~s 43 (97)
T COG1862 28 RPQRKRMKEHQELLNS 43 (97)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3445666666666654
No 56
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=28.91 E-value=2e+02 Score=19.85 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=19.9
Q ss_pred CCCCHHHHHH-HHhhccCCeeeccC
Q psy14095 42 RGLTSVQQYL-RRVVYGKNEIAVPM 65 (132)
Q Consensus 42 ~GLs~~e~~~-r~~~yG~N~i~i~~ 65 (132)
.|-|++|+.. ..+.||.=..--|.
T Consensus 72 ~G~sd~eI~~~~v~RYG~~Vl~~Pp 96 (126)
T PRK10144 72 EGKSEVEIIGWMTERYGDFVRYNPP 96 (126)
T ss_pred cCCCHHHHHHHHHHhcCCeEEecCC
Confidence 7999999876 79999988885555
No 57
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.77 E-value=1.5e+02 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 94 DDYTSYAMAIAAMSVFSITGAIIQTRKR 121 (132)
Q Consensus 94 ~~y~~~a~ii~~~~i~s~~~~~~~~~k~ 121 (132)
..|-.-|+++++++++-+++-+|-.||.
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555566666666553
No 58
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=28.44 E-value=2.7e+02 Score=21.34 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy14095 105 AMSVFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 105 ~~~i~s~~~~~~~~~k~~~~L~~m 128 (132)
+++++..++.++-.|+-.+.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~pl~~l 92 (356)
T PRK10755 69 VMVSLTLLICFQAVRWITRPLAEL 92 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444445555555544444433
No 59
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.55 E-value=82 Score=19.75 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHH
Q psy14095 76 VLNPFYVFQLFSFALWFADDYTS 98 (132)
Q Consensus 76 ~~~Pf~i~qi~~~~lw~~~~y~~ 98 (132)
+.-|..+|.+|.+-+|++..|..
T Consensus 6 l~~PliiF~ifVaPiWL~LHY~s 28 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHYRS 28 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhhcc
Confidence 45688889999888898877743
No 60
>PF12591 DUF3762: Protein of unknown function (DUF3762); InterPro: IPR022239 This domain family is found in viruses, and is approximately 80 amino acids in length. The family is found in association with PF05533 from PFAM.
Probab=27.13 E-value=35 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=9.6
Q ss_pred EcceEEEEeCCC
Q psy14095 9 CKKLRYVWDPEL 20 (132)
Q Consensus 9 ~~~~rY~y~~~~ 20 (132)
=++.||+||+..
T Consensus 47 ~khvryvyndvs 58 (80)
T PF12591_consen 47 EKHVRYVYNDVS 58 (80)
T ss_pred CceEEeeeechh
Confidence 368999998865
No 61
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.46 E-value=1.2e+02 Score=19.20 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhh
Q psy14095 116 IQTRKRLMNPLSMYLE 131 (132)
Q Consensus 116 ~~~~k~~~~L~~m~~~ 131 (132)
...+|..++.++|..+
T Consensus 22 rpqkK~~k~~~~m~~~ 37 (84)
T TIGR00739 22 RPQRKRRKAHKKLIES 37 (84)
T ss_pred chHHHHHHHHHHHHHh
Confidence 3455666666666554
No 62
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=26.32 E-value=1.7e+02 Score=18.35 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHH
Q psy14095 74 LEVLNPFYVFQLFSF 88 (132)
Q Consensus 74 ~e~~~Pf~i~qi~~~ 88 (132)
+-..||+|.-.++..
T Consensus 49 ~~vRhPmY~g~~l~~ 63 (106)
T PF04191_consen 49 RYVRHPMYLGFLLIL 63 (106)
T ss_pred cCcCChHHHHHHHHH
Confidence 446899986444433
No 63
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=26.09 E-value=47 Score=21.17 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=16.8
Q ss_pred cCCCCHHHHHHHHhhccCCeee
Q psy14095 41 ARGLTSVQQYLRRVVYGKNEIA 62 (132)
Q Consensus 41 ~~GLs~~e~~~r~~~yG~N~i~ 62 (132)
..|++...+.+..+.||.+.++
T Consensus 17 ~~gl~~~~a~kl~~~yg~~ai~ 38 (94)
T PF14490_consen 17 EYGLSPKLAMKLYKKYGDDAIE 38 (94)
T ss_dssp HTT--HHHHHHHHHHH-TTHHH
T ss_pred HcCCCHHHHHHHHHHHhHHHHH
Confidence 4799999999999999998875
No 64
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.74 E-value=2.1e+02 Score=19.01 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14095 100 AMAIAAMSVFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 100 a~ii~~~~i~s~~~~~~~~~k~~~~L~~m 128 (132)
.++.+++-++..++.++|-|.=.+++++|
T Consensus 5 ii~~~~~~~lQ~~l~~~Qik~f~~~~~~l 33 (109)
T PF06923_consen 5 IILLVIAWLLQILLGWFQIKNFNKAYKEL 33 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888887544444443
No 65
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.60 E-value=2.5e+02 Score=19.96 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=36.7
Q ss_pred eeeccCCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14095 60 EIAVPMKSIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLS 127 (132)
Q Consensus 60 ~i~i~~~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~ 127 (132)
++.++-+|..+.-+--..-|...+.+...+ .+.-...=.+.++..++.....++--|+-.+++++
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~L---a~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAIL---AQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666788887777777776654443322 22112223334455555666666767776666655
No 66
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=24.70 E-value=85 Score=19.10 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.6
Q ss_pred hcCCCCHHHHHHH
Q psy14095 40 DARGLTSVQQYLR 52 (132)
Q Consensus 40 ~~~GLs~~e~~~r 52 (132)
...|||.+|..++
T Consensus 15 K~~gLT~eE~~Eq 27 (65)
T PF05979_consen 15 KEEGLTEEEKAEQ 27 (65)
T ss_dssp HTT---HHHHHHH
T ss_pred ccCCCCHHHHHHH
Confidence 3489999887654
No 67
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=24.61 E-value=56 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHhhccCCeeeccC
Q psy14095 43 GLTSVQQYLRRVVYGKNEIAVPM 65 (132)
Q Consensus 43 GLs~~e~~~r~~~yG~N~i~i~~ 65 (132)
=||.+|+++.+++|+-..-..|+
T Consensus 17 iLs~eE~~~lL~~y~i~~~qLP~ 39 (79)
T PRK09570 17 ILSEEEAKKLLKEYGIKPEQLPK 39 (79)
T ss_pred ECCHHHHHHHHHHcCCCHHHCCc
Confidence 48999999999999987776655
No 68
>PRK01631 hypothetical protein; Provisional
Probab=24.46 E-value=88 Score=19.67 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=9.8
Q ss_pred cCCCCHHHHHHHH
Q psy14095 41 ARGLTSVQQYLRR 53 (132)
Q Consensus 41 ~~GLs~~e~~~r~ 53 (132)
..|||.+|..++.
T Consensus 17 ~~gLT~eE~~Eq~ 29 (76)
T PRK01631 17 ATGLTVDEKQEQQ 29 (76)
T ss_pred ccCCCHHHHHHHH
Confidence 3899999876643
No 69
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.39 E-value=2.3e+02 Score=19.00 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhhh
Q psy14095 117 QTRKRLMNPLSMYLE 131 (132)
Q Consensus 117 ~~~k~~~~L~~m~~~ 131 (132)
-.+|..++.++|..+
T Consensus 24 PQkKr~K~~~~m~~~ 38 (109)
T PRK05886 24 RQRKAMQATIDLHES 38 (109)
T ss_pred HHHHHHHHHHHHHHh
Confidence 335556666666554
No 70
>PHA03045 IMV membrane protein; Provisional
Probab=23.62 E-value=2.4e+02 Score=19.07 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 99 YAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 99 ~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
|.++|+=+++.++.-...+|+.+..+.+++-
T Consensus 10 YFILIFNIIvp~I~eKLr~E~~ay~~~~~l~ 40 (113)
T PHA03045 10 YFILIFNIIVPAISEKLRREYDAYTKYKQLK 40 (113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667778888899999999998877776654
No 71
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.51 E-value=1.6e+02 Score=20.84 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14095 98 SYAMAIAAMSVFSITGAIIQT 118 (132)
Q Consensus 98 ~~a~ii~~~~i~s~~~~~~~~ 118 (132)
..+++.++.+++.+++.+-+.
T Consensus 48 DL~II~~L~ll~l~giq~~~y 68 (149)
T PF11694_consen 48 DLSIIALLLLLLLIGIQYSDY 68 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666665554443
No 72
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=23.17 E-value=2e+02 Score=23.66 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14095 101 MAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131 (132)
Q Consensus 101 ~ii~~~~i~s~~~~~~~~~k~~~~L~~m~~~ 131 (132)
.+++++......+++-+.|-+.++|+++++.
T Consensus 212 v~vllV~~t~lalNl~ehRlAD~kLkeL~qr 242 (459)
T COG4564 212 VAVLLVFATCLALNLREHRLADKKLKELAQR 242 (459)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Confidence 3445555666777888889899999998865
No 73
>PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to constitute part of the catalytic core of ATP dependent DNA ligase []. ; GO: 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 2CFM_A 1X9N_A 1VS0_B 3GDE_A 2HIX_A 2HIV_A 3L2P_A 4EQ5_A.
Probab=22.72 E-value=1.7e+02 Score=18.44 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHhhccCCeeec
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAV 63 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i 63 (132)
.|++.++.++..+..-++.+..
T Consensus 28 tG~~~~~~~~l~~~l~~~~~~~ 49 (97)
T PF04679_consen 28 TGFSDEELRELRERLEPLWIKK 49 (97)
T ss_dssp SS--HHHHHHHHHHHGGGEEEE
T ss_pred CCCCHHHHHHHHHHhhCccccC
Confidence 7999999998888887777643
No 74
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=22.60 E-value=2.7e+02 Score=19.28 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHH-HHHHHHHHHHhhhh
Q psy14095 70 SLLFLEVLNPFY-VFQLFSFALWFADD 95 (132)
Q Consensus 70 ~ll~~e~~~Pf~-i~qi~~~~lw~~~~ 95 (132)
..+-+-.-+|.. ++-++.+++|...+
T Consensus 6 ~~is~~~gs~~~f~~~~~~Ii~W~i~G 32 (132)
T PF04120_consen 6 NWISDVAGSPWAFVIAVAVIIVWAISG 32 (132)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 344455566774 45555557787764
No 75
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.31 E-value=1.1e+02 Score=19.44 Aligned_cols=6 Identities=0% Similarity=-0.269 Sum_probs=1.5
Q ss_pred HHHHhh
Q psy14095 123 MNPLSM 128 (132)
Q Consensus 123 ~~L~~m 128 (132)
+++.++
T Consensus 37 rkId~l 42 (81)
T PF00558_consen 37 RKIDRL 42 (81)
T ss_dssp --CHHH
T ss_pred HhHHHH
Confidence 344333
No 76
>PRK02539 hypothetical protein; Provisional
Probab=22.27 E-value=1e+02 Score=19.81 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=10.5
Q ss_pred cCCCCHHHHHHHHh
Q psy14095 41 ARGLTSVQQYLRRV 54 (132)
Q Consensus 41 ~~GLs~~e~~~r~~ 54 (132)
..|||.+|..++.+
T Consensus 18 ~~gLT~eEk~Eq~~ 31 (85)
T PRK02539 18 TEGLTGEEKVEQAK 31 (85)
T ss_pred ccCCCHHHHHHHHH
Confidence 38999998776543
No 77
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.23 E-value=2.2e+02 Score=18.82 Aligned_cols=13 Identities=15% Similarity=-0.043 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhC
Q psy14095 120 KRLMNPLSMYLEI 132 (132)
Q Consensus 120 k~~~~L~~m~~~~ 132 (132)
+..++++++++++
T Consensus 90 ~le~~i~~L~qei 102 (115)
T PF10066_consen 90 RLEEKIKRLAQEI 102 (115)
T ss_pred HHHHHHHHHHHHH
Confidence 4567888887764
No 78
>KOG3733|consensus
Probab=21.70 E-value=3.3e+02 Score=23.09 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHH
Q psy14095 80 FYVFQLFSFALWFADDYTSYAMAIAA-MSVFSITGAI 115 (132)
Q Consensus 80 f~i~qi~~~~lw~~~~y~~~a~ii~~-~~i~s~~~~~ 115 (132)
|--.|-=+.++|++...+.|++|-+. -+++|..+.+
T Consensus 466 FA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAl 502 (566)
T KOG3733|consen 466 FATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIAL 502 (566)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43455567789999988888877663 3455555443
No 79
>PF13964 Kelch_6: Kelch motif
Probab=21.69 E-value=1.2e+02 Score=16.40 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.3
Q ss_pred EcceEEEEeCCCCeeeeccCC
Q psy14095 9 CKKLRYVWDPELRHFYKLCGL 29 (132)
Q Consensus 9 ~~~~rY~y~~~~~~F~~~~~~ 29 (132)
....-+.||.+++++..+...
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred ccccEEEEcCCCCcEEECCCC
Confidence 445678999999999988643
No 80
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=21.63 E-value=89 Score=16.42 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.1
Q ss_pred ceEEEEeCCCCeeeecc
Q psy14095 11 KLRYVWDPELRHFYKLC 27 (132)
Q Consensus 11 ~~rY~y~~~~~~F~~~~ 27 (132)
..-+.||..+++|.++.
T Consensus 28 ~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 28 NSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eeEEEEeCCCCEEEEcC
Confidence 45688999999999875
No 81
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.47 E-value=2.5e+02 Score=20.99 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhh
Q psy14095 119 RKRLMNPLSMYLE 131 (132)
Q Consensus 119 ~k~~~~L~~m~~~ 131 (132)
+..++++|++.+|
T Consensus 71 ~ekm~~~qk~m~e 83 (201)
T COG1422 71 QEKMKELQKMMKE 83 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666666654
No 82
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=21.41 E-value=93 Score=17.84 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14095 103 IAAMSVFSITGAIIQTRKR 121 (132)
Q Consensus 103 i~~~~i~s~~~~~~~~~k~ 121 (132)
++++++++..+.++-.++-
T Consensus 5 ~~~~~~~~~~~~~~~~~~i 23 (70)
T PF00672_consen 5 FLIILLLSLLLAWLLARRI 23 (70)
T ss_dssp HHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544433
No 83
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=21.31 E-value=93 Score=16.65 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHH
Q psy14095 72 LFLEVLNPFYVFQ 84 (132)
Q Consensus 72 l~~e~~~Pf~i~q 84 (132)
.+.|+.+|+.+|+
T Consensus 23 wl~E~~hpy~~f~ 35 (38)
T PF13587_consen 23 WLSELAHPYYVFT 35 (38)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ccHHHhhHHHHHH
Confidence 4678888887764
No 84
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=21.06 E-value=4.4e+02 Score=24.81 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhHHH
Q psy14095 81 YVFQLFSFALWFADDYTS 98 (132)
Q Consensus 81 ~i~qi~~~~lw~~~~y~~ 98 (132)
..+.++|+++|+..-++.
T Consensus 4 l~~~~l~~~iW~~gp~~~ 21 (1169)
T TIGR03348 4 LGLILLCILIWWAGPLLA 21 (1169)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 446677788898876644
No 85
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.68 E-value=3.8e+02 Score=20.19 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=19.8
Q ss_pred ccCCeeeccCCCHHHHHHHHHHhHHHHHHHH
Q psy14095 56 YGKNEIAVPMKSIFSLLFLEVLNPFYVFQLF 86 (132)
Q Consensus 56 yG~N~i~i~~~s~~~ll~~e~~~Pf~i~qi~ 86 (132)
|++.....+.++++.-+.+.+.+-+..|.-+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 232 (262)
T PF14257_consen 202 YEPESIKPESPSFGSRFRDALKNGWNALVSF 232 (262)
T ss_pred EecCCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4444333455688888888888877554433
No 86
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=20.60 E-value=2.6e+02 Score=18.29 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy14095 104 AAMSVFS 110 (132)
Q Consensus 104 ~~~~i~s 110 (132)
.++++++
T Consensus 29 ~liill~ 35 (102)
T PF11669_consen 29 VLIILLS 35 (102)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.36 E-value=1.7e+02 Score=23.13 Aligned_cols=6 Identities=0% Similarity=-0.457 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy14095 121 RLMNPL 126 (132)
Q Consensus 121 ~~~~L~ 126 (132)
..++|+
T Consensus 287 mkKKlQ 292 (299)
T PF02009_consen 287 MKKKLQ 292 (299)
T ss_pred hhHHHH
Confidence 334443
Done!