Query psy14095
Match_columns 132
No_of_seqs 111 out of 794
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:25:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.3 3.9E-12 1.3E-16 111.6 9.5 86 42-127 71-170 (1034)
2 2zxe_A Na, K-ATPase alpha subu 99.3 3.6E-12 1.2E-16 111.8 6.7 88 42-129 66-170 (1028)
3 3ar4_A Sarcoplasmic/endoplasmi 99.3 6.9E-12 2.4E-16 109.6 8.5 93 35-127 14-119 (995)
4 1mhs_A Proton pump, plasma mem 99.2 1.6E-11 5.4E-16 106.7 7.8 87 42-129 86-173 (920)
5 3b8c_A ATPase 2, plasma membra 99.0 2.1E-12 7.1E-17 111.9 -7.5 94 34-128 22-124 (885)
6 2w84_A Peroxisomal membrane pr 63.0 5.9 0.0002 23.7 2.6 22 39-60 42-63 (70)
7 1nkz_B Light-harvesting protei 55.4 7.9 0.00027 20.7 2.0 13 42-54 1-13 (41)
8 1lgh_B LH II, B800/850, light 52.8 8.9 0.0003 20.9 2.0 13 42-54 6-18 (45)
9 3j09_A COPA, copper-exporting 46.0 6.6 0.00023 33.1 1.1 47 82-128 157-205 (723)
10 3j08_A COPA, copper-exporting 44.6 5.4 0.00019 33.2 0.4 48 80-127 77-126 (645)
11 3ff5_A PEX14P, peroxisomal bio 41.9 19 0.00066 20.3 2.4 16 39-54 37-52 (54)
12 1p58_D Envelope protein M; fla 35.7 52 0.0018 19.7 3.7 28 76-104 37-64 (75)
13 2jvd_A UPF0291 protein YNZC; s 33.0 38 0.0013 19.0 2.6 16 41-56 19-37 (54)
14 3bhp_A UPF0291 protein YNZC; N 32.2 39 0.0013 19.4 2.6 12 41-52 19-30 (60)
15 3rfu_A Copper efflux ATPase; a 30.2 25 0.00084 29.9 2.2 35 95-129 186-220 (736)
16 1hmj_A RPB5, protein (subunit 26.9 29 0.00099 21.0 1.5 23 43-65 14-36 (78)
17 1irz_A ARR10-B; helix-turn-hel 26.8 46 0.0016 19.3 2.4 21 37-57 37-57 (64)
18 4aw6_A CAAX prenyl protease 1 24.7 1.8E+02 0.0061 23.4 6.3 38 52-94 149-190 (482)
19 3syx_A Sprouty-related, EVH1 d 23.9 88 0.003 20.7 3.6 26 3-28 10-35 (130)
20 1eik_A RNA polymerase subunit 23.8 34 0.0011 20.7 1.4 23 43-65 16-38 (77)
21 2rdd_B UPF0092 membrane protei 21.5 91 0.0031 15.7 3.9 16 115-130 21-36 (37)
22 1dx7_A Light-harvesting protei 21.4 14 0.00048 20.3 -0.6 13 42-54 9-21 (48)
23 1qc6_A EVH1 domain from ENA/VA 21.1 1.4E+02 0.0047 19.3 4.2 27 1-27 1-27 (130)
24 1evh_A WH1 domain, protein (ME 20.7 1.4E+02 0.0049 18.8 4.1 27 1-27 1-27 (112)
25 1jei_A Emerin; membrane protei 20.5 67 0.0023 17.9 2.1 19 42-60 4-22 (53)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.33 E-value=3.9e-12 Score=111.57 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFAD-------------DYTSYAMAIAAMS 107 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~-------------~y~~~a~ii~~~~ 107 (132)
.|||++||++|+++||+|++..++ +|+++.+++++.+||.+++++++++.++. +++..++++++++
T Consensus 71 ~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv 150 (1034)
T 3ixz_A 71 KGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVV 150 (1034)
T ss_pred cCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheee
Confidence 699999999999999999998776 59999999999999987777666554332 3466788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14095 108 VFSITGAIIQTRKRLMNPLS 127 (132)
Q Consensus 108 i~s~~~~~~~~~k~~~~L~~ 127 (132)
++++++.++|++|+.+++++
T Consensus 151 ~i~~~~~~~qe~ka~~al~~ 170 (1034)
T 3ixz_A 151 VVTGCFGYYQEFKSTNIIAS 170 (1034)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765444
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.28 E-value=3.6e-12 Score=111.80 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhh----h---------hHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFA----D---------DYTSYAMAIAAMS 107 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~----~---------~y~~~a~ii~~~~ 107 (132)
.|||++|+++|+++||+|++..++ +|+++.+++++.+||.+++++++++.++ + +++..++++++++
T Consensus 66 ~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv 145 (1028)
T 2zxe_A 66 RGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVV 145 (1028)
T ss_dssp SCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence 699999999999999999998875 6999999999999999888777655432 2 3566788899999
Q ss_pred HHHHHHHHHHHHHHH---HHHHhhh
Q psy14095 108 VFSITGAIIQTRKRL---MNPLSMY 129 (132)
Q Consensus 108 i~s~~~~~~~~~k~~---~~L~~m~ 129 (132)
++++++.++|++|+. ++|++|.
T Consensus 146 ~i~~~~~~~qe~ka~~~~~~L~~l~ 170 (1028)
T 2zxe_A 146 IVTGCFSYYQEAKSSRIMDSFKNMV 170 (1028)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998754 4555554
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.28 E-value=6.9e-12 Score=109.60 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=72.5
Q ss_pred hHHHhhc--CCCCHHHHHHHHhhccCCeeeccC-CCHHHHHHHHHHhHHHHHHHHHHHHHhhhh----------HHHHHH
Q psy14095 35 TAQLHDA--RGLTSVQQYLRRVVYGKNEIAVPM-KSIFSLLFLEVLNPFYVFQLFSFALWFADD----------YTSYAM 101 (132)
Q Consensus 35 ~~~~~~~--~GLs~~e~~~r~~~yG~N~i~i~~-~s~~~ll~~e~~~Pf~i~qi~~~~lw~~~~----------y~~~a~ 101 (132)
++.+... .|||++|+++|+++||+|+++.++ +|++++++++|.+|++++.++++++.++.. .+..++
T Consensus 14 ~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~ 93 (995)
T 3ar4_A 14 LAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPF 93 (995)
T ss_dssp HHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHH
T ss_pred HHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhH
Confidence 3444432 699999999999999999998876 599999999999999877766665544321 345578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14095 102 AIAAMSVFSITGAIIQTRKRLMNPLS 127 (132)
Q Consensus 102 ii~~~~i~s~~~~~~~~~k~~~~L~~ 127 (132)
++++++++++++..+|++|+.+++++
T Consensus 94 ~i~~~~~~~~~i~~~qe~~a~~al~~ 119 (995)
T 3ar4_A 94 VILLILIANAIVGVWQERNAENAIEA 119 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999986544433
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.23 E-value=1.6e-11 Score=106.72 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHHHhHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14095 42 RGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFY-VFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRK 120 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf~-i~qi~~~~lw~~~~y~~~a~ii~~~~i~s~~~~~~~~~k 120 (132)
.|||++|+++|+++||+|++..++++++..++++|.+|+. ++++++++.|++.+|.. +.+++++++++.++.++|++|
T Consensus 86 ~GLs~~ea~~r~~~~G~N~l~~~~~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~~-~~~i~~vv~i~~~i~~~qe~~ 164 (920)
T 1mhs_A 86 VGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVD-FGVICGLLLLNAVVGFVQEFQ 164 (920)
T ss_dssp CCCCSHHHHHHHHHTSSSSCCCCCCSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999998778999999999999995 56666666677766555 456677888899999999998
Q ss_pred HHHHHHhhh
Q psy14095 121 RLMNPLSMY 129 (132)
Q Consensus 121 ~~~~L~~m~ 129 (132)
+.++++++.
T Consensus 165 a~~a~~~L~ 173 (920)
T 1mhs_A 165 AGSIVDELK 173 (920)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhh
Confidence 877666553
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.01 E-value=2.1e-12 Score=111.89 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=73.5
Q ss_pred ChHHHhhc-CCCCHHHHHHHHhhccCCeeeccCCCHHHHHHHHHHhHHH-HHHHHHHHHHhhh-------hHHHHHHHHH
Q psy14095 34 STAQLHDA-RGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFY-VFQLFSFALWFAD-------DYTSYAMAIA 104 (132)
Q Consensus 34 ~~~~~~~~-~GLs~~e~~~r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf~-i~qi~~~~lw~~~-------~y~~~a~ii~ 104 (132)
.++.+... .|||++|+++|+++||+|+++.++++.+..+++++.+||. ++++++++.|.+. +|.. +++++
T Consensus 22 ~~~~l~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~-~~~I~ 100 (885)
T 3b8c_A 22 VFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQD-FVGII 100 (885)
T ss_dssp CTTTSSSCSSCSTHHHHHHHSSSCCSCCTTTTCCCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTT-HHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHH-HHHHH
Confidence 34444443 7999999999999999999988888999999999999995 5666665656654 4444 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy14095 105 AMSVFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 105 ~~~i~s~~~~~~~~~k~~~~L~~m 128 (132)
++++++.++.++|++|+.++++++
T Consensus 101 ~~v~i~~~l~~~qe~ka~~al~~L 124 (885)
T 3b8c_A 101 CLLVINSTISFIEENNAGNAAAAL 124 (885)
T ss_dssp HHTTTTTTTTTTTTTTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999877666554
No 6
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=62.97 E-value=5.9 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.0
Q ss_pred hhcCCCCHHHHHHHHhhccCCe
Q psy14095 39 HDARGLTSVQQYLRRVVYGKNE 60 (132)
Q Consensus 39 ~~~~GLs~~e~~~r~~~yG~N~ 60 (132)
...+||+++|++..++.-|.+.
T Consensus 42 L~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 42 LKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHTTCCHHHHHHHHHHHTCCC
T ss_pred HHHcCCCHHHHHHHHHHccCCC
Confidence 3458999999999988887654
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=55.43 E-value=7.9 Score=20.67 Aligned_cols=13 Identities=23% Similarity=-0.046 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHh
Q psy14095 42 RGLTSVQQYLRRV 54 (132)
Q Consensus 42 ~GLs~~e~~~r~~ 54 (132)
.|||++|+++-..
T Consensus 1 ~gLT~~EA~EfH~ 13 (41)
T 1nkz_B 1 ATLTAEQSEELHK 13 (41)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4899999886443
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=52.80 E-value=8.9 Score=20.88 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHh
Q psy14095 42 RGLTSVQQYLRRV 54 (132)
Q Consensus 42 ~GLs~~e~~~r~~ 54 (132)
.|||++|+++-..
T Consensus 6 tGLT~~EA~EfH~ 18 (45)
T 1lgh_B 6 SGLTEEEAIAVHD 18 (45)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7999999986543
No 9
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=46.03 E-value=6.6 Score=33.13 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14095 82 VFQLFSFALWFADD--YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSM 128 (132)
Q Consensus 82 i~qi~~~~lw~~~~--y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m 128 (132)
++++++.+.|...+ |+..++++++++.++..+..+.++|+.++++++
T Consensus 157 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l 205 (723)
T 3j09_A 157 LASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKL 205 (723)
T ss_dssp HHHHHHHHTTTTCCCCCCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555454444 344466666666666666666665554444443
No 10
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=44.55 E-value=5.4 Score=33.20 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14095 80 FYVFQLFSFALWFADDY--TSYAMAIAAMSVFSITGAIIQTRKRLMNPLS 127 (132)
Q Consensus 80 f~i~qi~~~~lw~~~~y--~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~ 127 (132)
-+++.+++.+.|..+++ +..++++++++.++..+..+.++|+.+++++
T Consensus 77 a~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~ 126 (645)
T 3j08_A 77 AFLASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKK 126 (645)
T ss_dssp HHHHHHHHHHHHCCSCSSCCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667666766654 4446666666666666666655554443333
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=41.90 E-value=19 Score=20.26 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=12.5
Q ss_pred hhcCCCCHHHHHHHHh
Q psy14095 39 HDARGLTSVQQYLRRV 54 (132)
Q Consensus 39 ~~~~GLs~~e~~~r~~ 54 (132)
....||+++|+++..+
T Consensus 37 L~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 37 LKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 3458999999987654
No 12
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=35.69 E-value=52 Score=19.69 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=17.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14095 76 VLNPFYVFQLFSFALWFADDYTSYAMAIA 104 (132)
Q Consensus 76 ~~~Pf~i~qi~~~~lw~~~~y~~~a~ii~ 104 (132)
+.||.|-+-+. ++.|++.+...--++++
T Consensus 37 lrNp~~al~a~-~~~w~lG~~~~Qrvi~~ 64 (75)
T 1p58_D 37 LRHPGFTIMAA-ILAYTIGTTHFQRVLIF 64 (75)
T ss_pred HHChHHHHHHH-HHHHHHcCChHHHHHHH
Confidence 68998866655 67787765544333333
No 13
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=33.02 E-value=38 Score=19.05 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=10.9
Q ss_pred cCCCCHHHHHH---HHhhc
Q psy14095 41 ARGLTSVQQYL---RRVVY 56 (132)
Q Consensus 41 ~~GLs~~e~~~---r~~~y 56 (132)
..|||.+|..+ .++.|
T Consensus 19 ~~gLT~eEk~EQ~~LR~eY 37 (54)
T 2jvd_A 19 AGVITEEEKAEQQKLRQEY 37 (54)
T ss_dssp HTCCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 38999987655 34444
No 14
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=32.16 E-value=39 Score=19.43 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=9.3
Q ss_pred cCCCCHHHHHHH
Q psy14095 41 ARGLTSVQQYLR 52 (132)
Q Consensus 41 ~~GLs~~e~~~r 52 (132)
..|||.+|..++
T Consensus 19 ~~gLT~eEk~EQ 30 (60)
T 3bhp_A 19 AGVITEEEKAEQ 30 (60)
T ss_dssp HTCCCHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 389999987654
No 15
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=30.20 E-value=25 Score=29.87 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14095 95 DYTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMY 129 (132)
Q Consensus 95 ~y~~~a~ii~~~~i~s~~~~~~~~~k~~~~L~~m~ 129 (132)
.|+..+.+++++++++..+..+.++|+.++++++.
T Consensus 186 ~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~ 220 (736)
T 3rfu_A 186 VYFEAAAVITTLVLLGQVLELKAREQTGSAIRALL 220 (736)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888877666665543
No 16
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.92 E-value=29 Score=21.04 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHhhccCCeeeccC
Q psy14095 43 GLTSVQQYLRRVVYGKNEIAVPM 65 (132)
Q Consensus 43 GLs~~e~~~r~~~yG~N~i~i~~ 65 (132)
=||.+|+++.+++|+-..-..|.
T Consensus 14 iLs~eEk~~lL~~y~i~~~qLPr 36 (78)
T 1hmj_A 14 IVPKEEVEEILKRYNIKIQQLPK 36 (78)
T ss_pred ECCHHHHHHHHHHcCCCHHHCCe
Confidence 48999999999999977666554
No 17
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=26.84 E-value=46 Score=19.28 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=17.0
Q ss_pred HHhhcCCCCHHHHHHHHhhcc
Q psy14095 37 QLHDARGLTSVQQYLRRVVYG 57 (132)
Q Consensus 37 ~~~~~~GLs~~e~~~r~~~yG 57 (132)
++++..||+.+.+...+++|-
T Consensus 37 ~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 37 DLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp HHHCCTTCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHH
Confidence 445557999999999999884
No 18
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=24.71 E-value=1.8e+02 Score=23.35 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=22.1
Q ss_pred HHhhccCCeeeccCCCHHHHHHHHHHhHHH----HHHHHHHHHHhhh
Q psy14095 52 RRVVYGKNEIAVPMKSIFSLLFLEVLNPFY----VFQLFSFALWFAD 94 (132)
Q Consensus 52 r~~~yG~N~i~i~~~s~~~ll~~e~~~Pf~----i~qi~~~~lw~~~ 94 (132)
..++||-|+ .++...+.+.+++-.. ..-+.++++|++.
T Consensus 149 le~~~Gfnk-----~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~ 190 (482)
T 4aw6_A 149 IEEKHGFNQ-----QTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIK 190 (482)
T ss_dssp HHHHTTCBC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999995 3555566666665442 2334445666654
No 19
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=23.89 E-value=88 Score=20.70 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.5
Q ss_pred ceEEEEEcceEEEEeCCCCeeeeccC
Q psy14095 3 QVRVFDCKKLRYVWDPELRHFYKLCG 28 (132)
Q Consensus 3 ~~r~f~~~~~rY~y~~~~~~F~~~~~ 28 (132)
.+.||.=|=....||+.+.+|.|...
T Consensus 10 ~~~~~~~rA~Vm~~Dd~tk~WlP~gg 35 (130)
T 3syx_A 10 HMSYARVRAVVMTRDDSSGGWLPLGG 35 (130)
T ss_dssp TTEEEEEEEEEEEECSSSSCEEESSS
T ss_pred cceeeEEEEEeeeEcCCCCceEeCCC
Confidence 46788889999999999999999864
No 20
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=23.76 E-value=34 Score=20.68 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHhhccCCeeeccC
Q psy14095 43 GLTSVQQYLRRVVYGKNEIAVPM 65 (132)
Q Consensus 43 GLs~~e~~~r~~~yG~N~i~i~~ 65 (132)
=||.+|+++.+++||-..-..|.
T Consensus 16 iLs~eEk~~lL~~y~i~~~qLP~ 38 (77)
T 1eik_A 16 ILNESEAKRVLKELDAHPEQLPK 38 (77)
T ss_dssp EECHHHHHHHHHHTTCCTTTSCC
T ss_pred EcCHHHHHHHHHHcCCCHHHCCe
Confidence 38899999999999977666555
No 21
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.45 E-value=91 Score=15.66 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhh
Q psy14095 115 IIQTRKRLMNPLSMYL 130 (132)
Q Consensus 115 ~~~~~k~~~~L~~m~~ 130 (132)
+.-.+|..++-++|..
T Consensus 21 iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 21 LRPQQKRTKEHKKLMD 36 (37)
T ss_dssp HHHHHHHHHHHTTGGG
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3444566667777654
No 22
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=21.40 E-value=14 Score=20.35 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHh
Q psy14095 42 RGLTSVQQYLRRV 54 (132)
Q Consensus 42 ~GLs~~e~~~r~~ 54 (132)
.|||.+|+++-..
T Consensus 9 tGLT~~EA~EfH~ 21 (48)
T 1dx7_A 9 TGLTDEQAQELHS 21 (48)
T ss_dssp HHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHH
Confidence 6999999986543
No 23
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.13 E-value=1.4e+02 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCceEEEEEcceEEEEeCCCCeeeecc
Q psy14095 1 MDQVRVFDCKKLRYVWDPELRHFYKLC 27 (132)
Q Consensus 1 ~~~~r~f~~~~~rY~y~~~~~~F~~~~ 27 (132)
|++...+.=+-..|.||+..++|.|..
T Consensus 1 ~~E~~i~~~~A~V~~~d~~~~~W~~~g 27 (130)
T 1qc6_A 1 MSEQSICQARASVMVYDDTSKKWVPIK 27 (130)
T ss_dssp CCCEEEEEEEEEEEEEETTTTEEEECC
T ss_pred CCceeEEEEEEEEEEECCCCCceeECC
Confidence 566778888888899999888898865
No 24
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=20.67 E-value=1.4e+02 Score=18.78 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCceEEEEEcceEEEEeCCCCeeeecc
Q psy14095 1 MDQVRVFDCKKLRYVWDPELRHFYKLC 27 (132)
Q Consensus 1 ~~~~r~f~~~~~rY~y~~~~~~F~~~~ 27 (132)
|++..++.=+-+.|.||+.+.+|.|..
T Consensus 1 ~~e~~i~~~~A~V~~~d~~~~~W~p~~ 27 (112)
T 1evh_A 1 MSEQSICQARAAVMVYDDANKKWVPAG 27 (112)
T ss_dssp -CEEEEEEEEEEEEEEETTTTEEEEGG
T ss_pred CCceeEEEEEEEEEEEcCCCCceEECC
Confidence 456677778888899999888898876
No 25
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.49 E-value=67 Score=17.90 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHhhccCCe
Q psy14095 42 RGLTSVQQYLRRVVYGKNE 60 (132)
Q Consensus 42 ~GLs~~e~~~r~~~yG~N~ 60 (132)
..|+.+|....+..||-+.
T Consensus 4 ~~Lsd~eLr~~L~~~G~~~ 22 (53)
T 1jei_A 4 ADLSDTELTTLLRRYNIPH 22 (53)
T ss_dssp TTCCHHHHHHHHSSSCCSC
T ss_pred HHcCHHHHHHHHHHhCCCC
Confidence 4689999999999999875
Done!