RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14095
(132 letters)
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 91.3 bits (227), Expect = 2e-22
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 7 FDCKKLRYVWDPELRHFYKLCGL------GLHISTAQLHDARGLTSVQQYLRRVVYGKNE 60
FD +K R+ + + + ST H T + YGKNE
Sbjct: 98 FDFRKQRFSYHEKELKIFSPLPYLFKEKSFGVYSTCAGHSNGLTTGDIAQRKAK-YGKNE 156
Query: 61 IAVPMKSIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRK 120
I +P+ S LL EVL+PFYVFQ+FS LW D+Y Y++ I MS SI+ ++ Q RK
Sbjct: 157 IEIPVPSFLELLKEEVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRK 216
Query: 121 RLMNPLSM 128
++ M
Sbjct: 217 QMQRLRDM 224
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. This entry represents the conserved
N-terminal region found in several classes of
cation-transporting P-type ATPases, including those
that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the
H+/K+- and Na+/K+-exchange P-ATPases, this domain is
found in the catalytic alpha chain. In gastric
H+/K+-ATPases, this domain undergoes reversible
sequential phosphorylation inducing conformational
changes that may be important for regulating the
function of these ATPases.
Length = 75
Score = 38.7 bits (91), Expect = 5e-05
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 42 RGLTSVQQYLRRVVYGKNEIAVP-MKSIFSLLFLEVLNPFYVFQLFSFALWFA 93
+GL+S + R YG NE+ P S + NP L + L
Sbjct: 22 KGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILLAAAVLSAL 74
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. Members of this families are involved in
Na+/K+, H+/K+, Ca++ and Mg++ transport.
Length = 69
Score = 36.4 bits (85), Expect = 4e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 41 ARGLTSVQQYLRRVVYGKNEIA-VPMKSIFSLLFLEVLNPFYVFQLFS 87
+GLT + R YG NE+ KS++ + + +P + L +
Sbjct: 18 EKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVIILLIA 65
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 36.2 bits (84), Expect = 0.003
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 42 RGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLF-----SFALWFADDY 96
GL+ + R YG NE+ K FL ++ L S + D
Sbjct: 43 TGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDA 102
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKR 121
A+ I + V + +Q +
Sbjct: 103 GVDAIVILLVVVINALLGFVQEYRA 127
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 30.4 bits (69), Expect = 0.22
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 76 VLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSITGAIIQTRKRLMNP 125
F+V++LF +L + + AMS + +++ R+ L+NP
Sbjct: 159 RFTTFWVWRLFLLSLGIC-------VLLVAMSSLTYRQPVVKIRQ-LLNP 200
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 28.7 bits (64), Expect = 1.1
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 43 GLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVL-NPF-YVFQLFSFALWFADDYTSYA 100
GLT+V+ R +G N+ K L + NPF Y+ + + DD +
Sbjct: 33 GLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEA-T 91
Query: 101 MAIAAMSVFSITGAIIQT 118
+ IA M + S IQ
Sbjct: 92 VIIALMVLASGLLGFIQE 109
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 441
Score = 27.2 bits (61), Expect = 2.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 73 FLEVLNPFYVFQLFSFALWFA 93
+L ++ PFY F AL+FA
Sbjct: 359 YLRIVGPFYGFFGLGLALYFA 379
>gnl|CDD|140236 PTZ00209, PTZ00209, retrotransposon hot spot protein; Provisional.
Length = 693
Score = 26.9 bits (59), Expect = 4.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 87 SFALWFAD-DYTSYAMAIAAMSVFSITGAIIQTRKRLMN 124
+ A +F+D D S MA + V +I G +I+TR+R +N
Sbjct: 597 NIARYFSDWDTFSRNMAWEMIYVNAIYGGVIKTRQRCVN 635
>gnl|CDD|239650 cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl
coenzyme A (CoA) mutase (MCM) family, unknown subfamily
1; composed of uncharacterized bacterial proteins
containing a C-terminal MCM domain. MCM catalyzes the
isomerization of methylmalonyl-CoA to succinyl-CoA. The
reaction proceeds via radical intermediates beginning
with a substrate-induced homolytic cleavage of the Co-C
bond of coenzyme B12 to produce cob(II)alamin and the
deoxyadenosyl radical. MCM plays an important role in
the conversion of propionyl-CoA to succinyl-CoA during
the degradation of propionate for the Krebs cycle. In
some bacteria, MCM is involved in the reverse metabolic
reaction, the rearrangement of succinyl-CoA to
methylmalonyl-CoA. Members of this subfamily also
contain an N-terminal coenzyme B12 binding domain
followed by a domain similar to the E. coli ArgK
membrane ATPase.
Length = 495
Score = 26.3 bits (58), Expect = 5.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 14 YVWDPELRHFYKLCGLGLHISTA------QLHD--ARGLTSVQQYLRR 53
Y ++R+FY + G HI+ A QL A G T V+ YL R
Sbjct: 241 YFIAHQVRNFYSVSISGYHIAEAGANPITQLAFTLANGFTYVEYYLSR 288
>gnl|CDD|214448 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 26.0 bits (58), Expect = 6.4
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 67 SIFSLLFLEVLNPFYVFQLFSFALWFADDYTSYAMAIAAMSVFSIT 112
S SL FL L FS ++W + S + ++V S
Sbjct: 15 SFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQV 60
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family.
Length = 399
Score = 26.1 bits (58), Expect = 6.7
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 16/79 (20%)
Query: 55 VYGKNEIAVPMKSI--------------FSLLFL--EVLNPFYVFQLFSFALWFADDYTS 98
V KN + + K+ +SL F + F S A
Sbjct: 25 VRSKNVLNILYKNFQDVAIGVLAYWGFGYSLAFGKRYGFSGFIGNLGVSAAGIQWGTLPD 84
Query: 99 YAMAIAAMSVFSITGAIIQ 117
+ M + I+
Sbjct: 85 GLFFLFQMMFAATAITIVS 103
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 25.9 bits (57), Expect = 7.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 43 GLTSVQQYL-RRVVYGKNEIAV----PMKSIFSLLFLEVLNPFYVFQLFSFALWFA---- 93
GL S Q+ RR +G NE V + F F++ NP + + S +
Sbjct: 23 GLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVK--NPLILLLIASAVISVFMGNI 80
Query: 94 DDYTSYAMAI 103
DD S +AI
Sbjct: 81 DDAVSITLAI 90
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 26.0 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 81 YVFQLFSFALWFADDYTSYAMAIAA 105
+V +L + L FADD ++A A+AA
Sbjct: 140 HVLELLTPGLVFADDGAAFARALAA 164
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes. Members
of this subfamily are tetrameric NAD-dependent
2-hydroxycarboxylate dehydrogenases including LDHs,
L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and
LDH-like malate dehydrogenases (MDH). Dehydrogenases
catalyze the conversion of carbonyl compounds to
alcohols or amino acids. LDHs catalyze the last step of
glycolysis in which pyruvate is converted to L-lactate.
Vertebrate LDHs are non-allosteric, but some bacterial
LDHs are activated by an allosteric effector such as
fructose-1,6-bisphosphate. L-HicDH catalyzes the
conversion of a variety of 2-oxo carboxylic acids with
medium-sized aliphatic or aromatic side chains. MDH is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. The LDH-like
subfamily is part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 300
Score = 25.7 bits (57), Expect = 8.2
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T+Y +A A I +I+ +R++ P+S E
Sbjct: 220 ATNYGIATAIAD---IVKSILLDERRVL-PVSAVQE 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.141 0.433
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,943,357
Number of extensions: 619096
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 53
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)