RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14095
(132 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 1e-04
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 37/124 (29%)
Query: 18 PELRHFYKLCGLGLHISTAQLHDAR------G----LTSVQQYLRRV--VYGKNEIAVPM 65
P + + IS L + G L + LR+ G ++ +P
Sbjct: 361 PAGKQ--------VEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 66 ---KSIFSLLFLEVLNPF---Y---VFQLFSFALWFAD-DYTSYAMAIAAMSVFSI-TGA 114
K FS FL V +PF L + L + + + + I V+ G+
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---VYDTFDGS 466
Query: 115 IIQT 118
++
Sbjct: 467 DLRV 470
Score = 28.9 bits (64), Expect = 0.51
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 41/125 (32%)
Query: 14 YVWDPELRHFYK----------------LCGLGLHISTAQLHDARGLTSVQ--------- 48
Y ++ ELR Y+ L L A+ +GL ++
Sbjct: 169 Y-FE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 49 --QYLRRVVYGKNEIAVPMKSIFSL----LFLEVL--NPFYVFQLFSFALWFADDYTSYA 100
YL + I+ P+ + L + ++L P + A + + A
Sbjct: 227 DKDYLLSI-----PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-A 280
Query: 101 MAIAA 105
+AIA
Sbjct: 281 VAIAE 285
Score = 26.2 bits (57), Expect = 4.3
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 27/115 (23%)
Query: 13 RYVWDPELRHFYKLCGLG-LHIS-------TAQLHDARGLTSVQQYLRRVVYGKNEIAVP 64
+ VW+ HF G L I T +G + Y + + +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 65 MKSIFSLLFLEVLNPFYVFQ-----LFSFALWFADDYTSY---AMAIAAMSVFSI 111
+ IF + + Y F+ L + T + A+ + + F
Sbjct: 1703 TEKIFKEINEHSTS--YTFRSEKGLLSA---------TQFTQPALTLMEKAAFED 1746
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 41 ARGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLFSFAL--WFADDYTS 98
GLTS + RR YG N++ ++ F + P F + A+ +D+
Sbjct: 85 RVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPI-QFVMEGAAVLAAGLEDWVD 143
Query: 99 YAMAIAAMSVFSITGAIIQTRK 120
I + + + +Q +
Sbjct: 144 -FGVICGLLLLNAVVGFVQEFQ 164
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 40 DARGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLF----SFAL----W 91
GLT+ + R ++G N++ +S + NP + AL
Sbjct: 29 SREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDG 88
Query: 92 FADDYTSYAMAIAAMSVFSITGAIIQTRK 120
D+ + I + V + T + I+
Sbjct: 89 RPPDWQD-FVGIICLLVINSTISFIEENN 116
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 33.0 bits (76), Expect = 0.017
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 14/93 (15%)
Query: 42 RGLTSVQQYLRRVVYGKNEIA-VPMKSIFSLLFLEVLNPF----YVFQLFSFALWFADDY 96
RGLT+ + G N + P + ++ F ++ + F +
Sbjct: 66 RGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAA 125
Query: 97 TS-------YAMAIAAMSVFSITGAI--IQTRK 120
T + + +V +TG Q K
Sbjct: 126 TEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAK 158
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 32.6 bits (75), Expect = 0.026
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 16/97 (16%)
Query: 39 HDARGLTSVQQYLRRVVYGKNEI-AVPMKSIFSLLFLEVLNPFYVFQLF-----SFALWF 92
+GL++ + G N + + ++ ++ +
Sbjct: 68 SATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGL-QCLMWVAAAICLIAFA 126
Query: 93 ADDYTS-------YAMAIAAMSVFSITGAI--IQTRK 120
+A+A ++V +TG Q K
Sbjct: 127 IQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFK 163
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 31.4 bits (72), Expect = 0.068
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
S+++ +SV + +I+ +K++ +S +
Sbjct: 217 QRSWSVG---LSVADMVDSIVNNKKKVH-SVSALAK 248
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 30.9 bits (71), Expect = 0.076
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
YTS+A+ +SV + +I++ +R+ P+S ++
Sbjct: 246 YTSWAIG---LSVADLAESIMKNLRRVH-PISTMIK 277
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 30.9 bits (71), Expect = 0.083
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T + A ++++ + A+++ ++ P SM L+
Sbjct: 211 ATIFGPA---VAIYRMVKAVVEDTGEII-PTSMILQ 242
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.096
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 14/68 (20%)
Query: 31 LHIST--AQLHDARGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLF-S 87
+S + D + V K + +I L VL P ++F
Sbjct: 328 RRLSIIAESIRDGLATW---DNWKHVNCDK------LTTIIES-SLNVLEPAEYRKMFDR 377
Query: 88 FALWFADD 95
++ F
Sbjct: 378 LSV-FPPS 384
Score = 29.8 bits (66), Expect = 0.28
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 40/120 (33%)
Query: 2 DQVRVF--DCKKLRYVW----------DPEL-RHFY-----KLCGLG-----LHISTAQL 38
+ V+ F + ++ Y + P + Y +L ++S Q
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 39 HDA--RGLTSVQQYLRRVVYGKNEIAVPM----KSIFSLLFLEVLNPFYVFQLFSFAL-W 91
+ + L ++ ++ G + K+ + L+V + V F + W
Sbjct: 137 YLKLRQALLELRPAKNVLIDG-------VLGSGKTW---VALDVCLSYKVQCKMDFKIFW 186
Score = 26.0 bits (56), Expect = 5.1
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 21/108 (19%)
Query: 12 LRYVWDPE-LRHFYKLCGLGLHISTAQLHDARGLTSVQQYLRRVVYGKNEIAVPMKSIFS 70
L V + + F C + L LT+ + + + + +
Sbjct: 250 LLNVQNAKAWNAFNLSCKI-L------------LTTRFKQVTDFLSAATTTHISLDH--- 293
Query: 71 LLFLEVLNPFYVFQLFSFALWF-ADDYTSYAMAIAAMSVFSITGAIIQ 117
L P V L L D + + SI I+
Sbjct: 294 --HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIR 338
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 30.9 bits (71), Expect = 0.10
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y +A M + IT AI + ++ +S LE
Sbjct: 231 ATYYGVA---MGLARITEAIFRNEDAVL-TVSALLE 262
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 30.6 bits (70), Expect = 0.10
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y +A MS+ IT AI+ ++ +S YL+
Sbjct: 231 ATYYGVA---MSLARITKAILHNENSIL-TVSTYLD 262
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 30.5 bits (70), Expect = 0.11
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T YA+A ++V I +I KR++ LS+YLE
Sbjct: 225 ATHYAIA---LAVADIVESIFFDEKRVL-TLSVYLE 256
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 30.6 bits (70), Expect = 0.12
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLEI 132
YTSY + A S I A++ + +S +
Sbjct: 227 YTSYGV---ATSAIRIAKAVMADAHAEL-VVSNRRDD 259
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 30.5 bits (70), Expect = 0.12
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y +A M + +T AI+ ++ +S YL+
Sbjct: 232 ATYYGIA---MGLARVTRAILHNENAIL-TVSAYLD 263
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 30.5 bits (70), Expect = 0.12
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y + + + AI+ K + +S +
Sbjct: 226 ATYYGIG---AGLARLVRAILTDEKGVY-TVSAFTP 257
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 30.5 bits (70), Expect = 0.13
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y +A +S+ +I +++ + + + +
Sbjct: 233 ATYYGIA---VSINTIVETLLKNQNTIR-TVGTVIN 264
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 30.5 bits (70), Expect = 0.13
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y + ++ IT A+++ R+ ++ +S
Sbjct: 224 ATYYGI---GAALARITEAVLRDRRAVL-TVSAPTP 255
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y +A ++ I+ AI+ ++ PLS+Y++
Sbjct: 234 ATFYGIA---TALARISKAILNDENAVL-PLSVYMD 265
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T + A V + AI+ ++ P S+ LE
Sbjct: 220 ATEWGPA---RGVAHMVEAILHDTGEVL-PASVKLE 251
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T+YA+ MS I A++ R++ P+S L+
Sbjct: 235 ATNYAIG---MSGVDIIEAVLHDTNRIL-PVSSMLK 266
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.8 bits (68), Expect = 0.20
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
T Y + ++ I+ AI++ ++ P+ Y++
Sbjct: 229 ATFYGIG---TALMRISKAILRDENAVL-PVGAYMD 260
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
+ + A ++ ++ I+ KRL+ LS Y++
Sbjct: 228 SEFG---PAAAILNVVRCIVNNEKRLL-TLSAYVD 258
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 96 YTSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
YA A SV + +I+ RKR++ P ++ LE
Sbjct: 223 SAFYA---PASSVVEMVESIVLDRKRVL-PCAVGLE 254
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 27.6 bits (62), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 41 ARGLTSVQQYLRRVVYGKNEI-AVPMKSIFSLLFLE 75
GLT Q YG NE+ A KS++ L +E
Sbjct: 22 TTGLTPDQVKRHLEKYGHNELPAEEGKSLW-ELVIE 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 117 QTRKRLMNPLSMY 129
Q K+L L +Y
Sbjct: 20 QALKKLQASLKLY 32
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.7 bits (60), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
TS A A + +T AI++ KR++ P + Y +
Sbjct: 221 TSAWYAPGA-AAAEMTEAILKDNKRIL-PCAAYCD 253
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 26.3 bits (59), Expect = 3.0
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
++Y A + AI + KR+ P S+YL+
Sbjct: 221 SNYG---PAAGLVLTVEAIKRDSKRIY-PYSLYLQ 251
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
YA A S ++ + + KR++ P S+Y
Sbjct: 243 AYYA---PAASAVAMATSFLNDEKRVI-PCSVYCN 273
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 25.9 bits (58), Expect = 3.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
YA A S + + ++ +KR++ P++ L
Sbjct: 235 AFYA---PAASAIQMAESYLKDKKRVL-PVAAQLS 265
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 25.9 bits (58), Expect = 4.4
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
+A A + + A ++ +K ++ P S +
Sbjct: 232 AYFA---PAAAAVKMAEAYLKDKKAVV-PCSAFCS 262
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 25.9 bits (58), Expect = 4.4
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 105 AMSVFSITGAIIQTRKRLMNPLSMYLE 131
A S+ +T AI++ ++R++ P YLE
Sbjct: 238 AASLVEMTEAILKDQRRVL-PAIAYLE 263
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 25.9 bits (58), Expect = 4.5
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 97 TSYAMAIAAMSVFSITGAIIQTRKRLMNPLSMYLE 131
A A ++ + + ++ K+++ S LE
Sbjct: 235 PYVA---PAAAIIEMAESYLKDLKKVL-ICSTLLE 265
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 26.0 bits (58), Expect = 4.9
Identities = 3/27 (11%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 105 AMSVFSITGAIIQTRKRLMNPLSMYLE 131
A + + + ++ +K ++ P + ++
Sbjct: 238 AAAGIQMAESFLKDKKMIL-PCAAKVK 263
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 25.5 bits (57), Expect = 5.2
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 105 AMSVFSITGAIIQTRKRLMNPLSMYLE 131
A S ++ A ++ K ++ S YL
Sbjct: 247 AASAVAMAQAYLKDSKSVL-VCSTYLT 272
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 25.5 bits (57), Expect = 5.4
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 105 AMSVFSITGAIIQTRKRLMNPLSMYLE 131
A + + A+++ +KR+M P++ YL
Sbjct: 230 AAATAQMVEAVLKDKKRVM-PVAAYLT 255
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 25.5 bits (56), Expect = 7.8
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 14/33 (42%)
Query: 78 NPFYVF-----QLFSFALW---------FADDY 96
FY Q+ +F W +DY
Sbjct: 483 TAFYYIDYTLAQICAFQFWKRSRENYKEAWNDY 515
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.141 0.433
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,086,665
Number of extensions: 113031
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 49
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (23.6 bits)