RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14095
         (132 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 30.4 bits (68), Expect = 0.049
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 11/87 (12%)

Query: 42  RGLTSVQQYLRRVVYGKNEIAVPMKSIFSLLFLEVLNPFYVFQLF-----SFALWFADDY 96
            GLT  Q       YG NE+          L +E      V  L      SF L + ++ 
Sbjct: 22  TGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEG 81

Query: 97  TSY------AMAIAAMSVFSITGAIIQ 117
                       I  + + +    + Q
Sbjct: 82  EETITAFVEPFVILLILIANAIVGVWQ 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,939
Number of extensions: 21029
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 4
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.4 bits)