Query psy14099
Match_columns 224
No_of_seqs 303 out of 2487
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:30:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 98.9 2.8E-09 9.4E-14 94.1 7.4 99 3-106 329-428 (491)
2 2cfq_A Lactose permease; trans 97.8 2.2E-05 7.6E-10 68.1 6.3 94 4-106 277-371 (417)
3 3o7q_A L-fucose-proton symport 97.8 6.4E-05 2.2E-09 64.8 8.3 98 2-106 77-175 (438)
4 1pw4_A Glycerol-3-phosphate tr 97.6 0.00011 3.7E-09 63.4 7.6 98 3-105 79-176 (451)
5 1pw4_A Glycerol-3-phosphate tr 97.4 0.00037 1.3E-08 60.1 8.2 53 54-106 352-405 (451)
6 4aps_A DI-OR tripeptide H+ sym 97.4 0.00029 9.9E-09 61.7 7.6 94 3-105 71-167 (491)
7 4gc0_A D-xylose-proton symport 97.4 0.00051 1.8E-08 60.1 9.2 49 56-104 134-182 (491)
8 2xut_A Proton/peptide symporte 97.1 0.0014 4.6E-08 58.0 8.3 95 3-105 71-169 (524)
9 2gfp_A EMRD, multidrug resista 97.1 0.00018 6E-09 60.9 2.1 94 4-106 53-146 (375)
10 3o7q_A L-fucose-proton symport 97.0 0.0019 6.5E-08 55.4 8.2 92 3-106 312-403 (438)
11 4aps_A DI-OR tripeptide H+ sym 96.8 0.00039 1.3E-08 60.9 2.2 51 56-106 394-444 (491)
12 2gfp_A EMRD, multidrug resista 94.7 0.011 3.9E-07 49.5 2.0 51 55-106 298-348 (375)
13 2xut_A Proton/peptide symporte 94.2 0.027 9.2E-07 49.5 3.4 51 56-106 413-463 (524)
14 2cfq_A Lactose permease; trans 48.3 3.9 0.00013 34.6 0.1 27 198-224 43-69 (417)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.88 E-value=2.8e-09 Score=94.10 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=62.2
Q ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhh-hhHhhhcccccchHH
Q psy14099 3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAY-TVLYVNTVDMFPTPL 81 (224)
Q Consensus 3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt~v 81 (224)
.+++..+.||.|||+.++.+..++.+.+..+..... . . ......++..++...+++..+ .+.|+|.+|+|||++
T Consensus 329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~ 403 (491)
T 4gc0_A 329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---T-Q-APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403 (491)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---T-T-CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---c-c-cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence 456777888988888766644333322221211111 1 1 112222333333333444444 357899999999999
Q ss_pred HHHHHHHHHHHHhhhcccccceeeh
Q psy14099 82 RQSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 82 R~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
|++|+|+++..+++++.+++++.+.
T Consensus 404 R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 404 RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876643
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.84 E-value=2.2e-05 Score=68.07 Aligned_cols=94 Identities=5% Similarity=0.003 Sum_probs=55.0
Q ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099 4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ 83 (224)
Q Consensus 4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~ 83 (224)
+.+..+.||.|||+++..+.....+.+. .. .+ ... .+...+..++..+.........+.+.+|.+|++.|+
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRII-GS-SF------ATS-ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHH-HH-TT------CCS-HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHH-HH-HH------hcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4455667888888776553333222222 11 11 111 222222222222333333445688999999999999
Q ss_pred HHHHHH-HHHHhhhcccccceeeh
Q psy14099 84 SLLAFC-SMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 84 ~g~g~~-~~~~~~~~~~~~~~~~~ 106 (224)
++.++. +...++|+.++|.+...
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~ 371 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGN 371 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHH
Confidence 999995 66677888888876653
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.78 E-value=6.4e-05 Score=64.76 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=63.2
Q ss_pred chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099 2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYV-NTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP 80 (224)
Q Consensus 2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 80 (224)
+.++...+.||.|||+.++.+.....+...+... .. ... .+..++..++..++.+........+.+|.+|.+
T Consensus 77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------IMN-YTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149 (438)
T ss_dssp THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST
T ss_pred HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------ccc-HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch
Confidence 3455666778888888766644333222221110 11 111 223333444444555566667889999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099 81 LRQSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 81 vR~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
.|++++++......+|..++|.+...
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.64 E-value=0.00011 Score=63.42 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=60.5
Q ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099 3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR 82 (224)
Q Consensus 3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR 82 (224)
.++...+.||.|||+.++.+.....+... +.. +..... ++ .+..++..++..++.+........+.+|.+|.+.|
T Consensus 79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~-~~~-~~~~~~-~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r 153 (451)
T 1pw4_A 79 KFIMGSVSDRSNPRVFLPAGLILAAAVML-FMG-FVPWAT-SS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 153 (451)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HHH-HCHHHH-SS--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred HHhHHHHHHhcCchHHHHHHHHHHHHHHH-HHH-hhhhcc-cc--HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhh
Confidence 34555667888888876654433322222 111 100000 11 12233334444455555666788999999999999
Q ss_pred HHHHHHHHHHHhhhcccccceee
Q psy14099 83 QSLLAFCSMIGRIGQVIAPQVFL 105 (224)
Q Consensus 83 ~~g~g~~~~~~~~~~~~~~~~~~ 105 (224)
++++|+......+|..++|.+..
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887764
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.44 E-value=0.00037 Score=60.07 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceeeh
Q psy14099 54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFLL 106 (224)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~~ 106 (224)
..++..++....+...+.+..|.+|++.|+++.|+.+....+ |+.++|.+...
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555666789999999999999999999999999 99999887653
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.44 E-value=0.00029 Score=61.74 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=56.7
Q ss_pred hhhHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099 3 RIVCIWMDHV-VFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL 81 (224)
Q Consensus 3 ~l~~~~~~~~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v 81 (224)
.+++..+.|| .|||+.++.+.....+... +.. + .++ .+...+..++..++.+........+.+|.+|.+.
T Consensus 71 ~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~-~~~-~------~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 141 (491)
T 4aps_A 71 GTIGGFVADRIIGARPAVFWGGVLIMLGHI-VLA-L------PFG-ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD 141 (491)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-HHH-S------CCS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHH-HHH-H------hhh-HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence 3455666777 7888877664433322222 111 1 111 2223333344445555566678899999999988
Q ss_pred --HHHHHHHHHHHHhhhcccccceee
Q psy14099 82 --RQSLLAFCSMIGRIGQVIAPQVFL 105 (224)
Q Consensus 82 --R~~g~g~~~~~~~~~~~~~~~~~~ 105 (224)
|++++++.+....+|..++|.+..
T Consensus 142 ~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 142 RRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHH
Confidence 777777777777888887776654
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.44 E-value=0.00051 Score=60.06 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099 56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF 104 (224)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~ 104 (224)
++..++.++......+|.+|..|.+.|++..++......+|...++.+.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcc
Confidence 3334445556667899999999999999999887776666665555433
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.11 E-value=0.0014 Score=57.99 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=54.1
Q ss_pred hhhHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099 3 RIVCIWMDHVV-FRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL 81 (224)
Q Consensus 3 ~l~~~~~~~~~-gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v 81 (224)
.+++..+.||. |||+.++.+.....+...+.. +. +.. .+...+..++..++.+........+.+|.+|.+.
T Consensus 71 ~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~~-----~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 71 PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA--IF-----EHS-VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH--HT-----SSC-HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH--Hh-----ccc-HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 34555666777 888776553332222222111 11 102 2223333333344445555677899999999999
Q ss_pred HHHHHHH---HHHHHhhhcccccceee
Q psy14099 82 RQSLLAF---CSMIGRIGQVIAPQVFL 105 (224)
Q Consensus 82 R~~g~g~---~~~~~~~~~~~~~~~~~ 105 (224)
|++..+. .+....+|+.++|.+..
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9765555 67777777777776554
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.08 E-value=0.00018 Score=60.88 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099 4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ 83 (224)
Q Consensus 4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~ 83 (224)
+....+.||.|||+.++.+............ + .+ ..+...+..++..++.+........+.+|.+|.+.|+
T Consensus 53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~------~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (375)
T 2gfp_A 53 LFYGPISDRVGRRPVILVGMSIFMLATLVAV--T------TS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR 123 (375)
T ss_dssp TTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH--H------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHH--H------hc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH
Confidence 4455566777777665443322222111111 1 11 1222333333444444555566789999999999999
Q ss_pred HHHHHHHHHHhhhcccccceeeh
Q psy14099 84 SLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 84 ~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
+..++......+|..++|.+...
T Consensus 124 ~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 124 HANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999998888888888876643
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.03 E-value=0.0019 Score=55.38 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=57.1
Q ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099 3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR 82 (224)
Q Consensus 3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR 82 (224)
.+++..+.||.|||+++..+.......+. +. .+ ... ......+ ++..++.+..+...+.+..|.+|++ |
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~ 380 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCL-IS-AF------AGG-HVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-T 380 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HH-HH------CCH-HHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-H
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH-HH-HH------cCC-cHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence 45566677888888876653332222222 11 11 111 2222222 3334555666777889999999988 9
Q ss_pred HHHHHHHHHHHhhhcccccceeeh
Q psy14099 83 QSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 83 ~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
+++.++.. .+.+++.++|.+...
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHH
Confidence 99988877 678999888887654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.83 E-value=0.00039 Score=60.95 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099 56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
++..+.........+.+..|.+|++.|+++.|+.+....+|+.++|.+...
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444456678999999999999999999999999999999887654
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.69 E-value=0.011 Score=49.52 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099 55 FLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
.++..++.+..+.....+..|.+| +.|+++.|+.+....+|+.++|.+...
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556677899999999 899999999999999999999987654
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.22 E-value=0.027 Score=49.54 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099 56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL 106 (224)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~ 106 (224)
++..++........+.+..|..|++.|++++|+.+....+|+.++|.+...
T Consensus 413 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 413 ALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556788999999999999999999999999999999987654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=48.34 E-value=3.9 Score=34.62 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHhhhhccceeeeccCC
Q psy14099 198 WKLTIVGSIDGLGALLGSPFCAFISDK 224 (224)
Q Consensus 198 ~~~~~~~s~~~~G~~~G~~~~G~lsDr 224 (224)
....+..+++.++.++|.+++|+++||
T Consensus 43 ~~~g~~~~~~~~~~~i~~~~~G~lsDr 69 (417)
T 2cfq_A 43 SDTGIIFAAISLFSLLFQPLFGLLSDK 69 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998
Done!