RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14099
(224 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 50.4 bits (121), Expect = 2e-07
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 40 MFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVI 99
+ P+ R L ++G GITSA+ ++Y+ T +++PT +R + CS + R+G +I
Sbjct: 402 LLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461
Query: 100 APQVFLLLGF 109
+P + L
Sbjct: 462 SPFLVYLGEK 471
Score = 40.0 bits (94), Expect = 6e-04
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 82 RQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPY- 140
R++ L I + VFL G + C +P AAN S +
Sbjct: 8 RRTFLLLALPIALLAFHFVLIVFL--GATP-EHHCRLP---DAANLSS--RCELNLTLPR 59
Query: 141 -KDGYPQNCFRYGHIG----EGNGCNPT---SFNKSHVIKC-NAWVFQTDEV--NLLNEF 189
DG P++C R+ GC P + C + W + D ++ E+
Sbjct: 60 LPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEW 119
Query: 190 NLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
+L C E+ WK+ + S +G LLGS ++SD+
Sbjct: 120 DLVC-EDAWKVDLTQSCFFVGVLLGSFVFGYLSDR 153
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 35.4 bits (82), Expect = 0.015
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGIT 63
+ + D + R+ L LIG+ +L + L L+G G+
Sbjct: 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA--------LLLLGF-GLG 280
Query: 64 SAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLL 107
A+ L ++ P R + + G +G + P + LL
Sbjct: 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324
Score = 27.3 bits (61), Expect = 7.4
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 55 FLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLG 112
FL+G+ G + Y + FP R L S +G ++ P + LL LG
Sbjct: 95 FLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG 151
>gnl|CDD|239588 cd03511, Rhizopine-oxygenase-like, This CD includes the putative
hydrocarbon oxygenase, MocD, a bacterial rhizopine
(3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and
other related proteins. It has been proposed that MocD,
MocE (Rieske-like ferredoxin), and MocF (ferredoxin
reductase) under the regulation of MocR, act in concert
to form a ferredoxin oxygenase system that demethylates
3-O-MSI to form scyllo-inosamine. This domain family
appears to be structurally related to the membrane fatty
acid desaturases and the alkane hydroxylases. They all
share in common extensive hydrophobic regions that would
be capable of spanning the membrane bilayer at least
twice. Comparison of sequences also reveals the
existence of three regions of conserved histidine
cluster motifs that contain eight histidine residues:
HXXXH, HXXHH, and HXXHH. These histidine residues are
reported to be catalytically essential and proposed to
be the ligands for the iron atoms contained within
homologs, stearoyl CoA desaturase and alkane
hydroxylase.
Length = 285
Score = 29.3 bits (66), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 96 GQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDG----YPQNCFRY 151
G A FL+ G + EC H T++ T WLN AV G P + FR+
Sbjct: 40 GSWWALPAFLVYGVLYAALFARWHECVH--GTAFATRWLNDAVGQIAGLMILLPPDFFRW 97
Query: 152 GH 153
H
Sbjct: 98 SH 99
>gnl|CDD|152257 pfam11821, DUF3341, Protein of unknown function (DUF3341). This
family of proteins are functionally uncharacterized.
This family is found in bacteria. Proteins in this
family are about 170 amino acids in length.
Length = 173
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 42 PTPLHHV-----VFRQTL----FLIGITGITSAYTVLYVNTVDMFP 78
P P+H + + L FL G+TG +A+ + Y + +P
Sbjct: 35 PFPVHGLDEALGLKPSRLPWVAFLGGLTGAATAFLLQYYTSAIDWP 80
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 28.5 bits (64), Expect = 2.9
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 49 VFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP 101
+F Q + GI+G+ Y F T R + L F +G +G +AP
Sbjct: 373 LFFQQMLGQGISGLLPKLIGGY------FDTEQRAAGLGFTYNVGALGGALAP 419
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 27.8 bits (62), Expect = 4.3
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 7 IWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAY 66
D R+ L + + +L+ +++ + +V R L G+ G + +
Sbjct: 54 RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL------LVLR---VLQGL-GGGALF 103
Query: 67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLG 112
D FP R L S +G + P + LL + G
Sbjct: 104 PAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFG 149
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 28.0 bits (63), Expect = 4.9
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 15 RQTLFLIGITGITSAYTVLYVNTVDMFP-TPLHHVVFRQTLFLIGITGI-TSAYTVLYVN 72
R+ L L+G G+ + VL V + + L+ I V +V
Sbjct: 315 RRPLLLLGAAGMAICFLVLGV--ALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVI 372
Query: 73 TVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL 105
++FP +R +A + + + +F
Sbjct: 373 VSELFPLGVRPKAMAIATAANWLANFLIGFLFP 405
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.465
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,496,724
Number of extensions: 1062237
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1119
Number of HSP's successfully gapped: 27
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.6 bits)