RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14099
         (224 letters)



>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 28.9 bits (64), Expect = 0.39
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 99  IAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYP-----QNCFRYGH 153
           +A    +L  F    +  LI +    A+ S   P+     P   GY       NC   G 
Sbjct: 1   LAAGAVILRRFAFNAAEQLIRDINDVASQS---PFRQMVTP--GGYTMSVAMTNCGHLGW 55

Query: 154 IGEGNG 159
                G
Sbjct: 56  TTHRQG 61


>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4
           12-hydroxydehydrogenase/prostaglandin 15-keto reductase
           {Guinea pig (Cavia porcellus) [TaxId: 10141]}
          Length = 147

 Score = 26.9 bits (59), Expect = 1.4
 Identities = 5/61 (8%), Positives = 17/61 (27%)

Query: 10  DHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVL 69
            +  F     ++  +G T+ +         +        +        G   + +A+  +
Sbjct: 75  KNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM 134

Query: 70  Y 70
            
Sbjct: 135 L 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.465 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,021
Number of extensions: 38902
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 5
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)