BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy141
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 128 LVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMRK 187
L F +V RHGDR G S W P G QL G + Y LG ++R+
Sbjct: 3 LKFVTLVFRHGDR--GPIETFPNDPIKESS----W-PQGFGQLTKWGMGQHYELGSYIRR 55
Query: 188 RYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRT 247
RY FL + Y H+ V + S D+DR + SA A L+PP+G +IWN + +QPIPV T
Sbjct: 56 RYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRL--LWQPIPVHT 113
Query: 248 LDAENDIYLNEDVHCVPYEMELAKVLLQG---MKNFNLKYKYVYEYLEMYTGMSVSNLMD 304
+ D L P EL L+ +K YK + L +G +L +
Sbjct: 114 VSLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQ-PYKSFIDTLPSLSGFEDQDLFE 172
Query: 305 V-ARIYTTLRIE 315
+ +R+Y L E
Sbjct: 173 IWSRLYDPLYCE 184
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 317 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 376
G + Y LG ++R+RY FL + Y H+ V + S D+DR + SA A L+PP+G +IWN
Sbjct: 42 GMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWN 101
Query: 377 DNVGRYYQPIPVRTLDAEND 396
+ +QPIPV T+ D
Sbjct: 102 PRL--LWQPIPVHTVSLSED 119
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 128 LVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPF----WLPYGCDQLRNKGKMRSYWLGL 183
L F +V RHGDR DP W P G QL G + Y LG
Sbjct: 3 LKFVTLVFRHGDR----------SPIDTFPTDPIKESSW-PQGFGQLTQLGMEQHYELGE 51
Query: 184 FMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPI 243
++RKRY FL + Y H V + S D+DR + SA A L+PP+G++IWN + +QPI
Sbjct: 52 YIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL--LWQPI 109
Query: 244 PVRTLDAEND 253
PV T+ D
Sbjct: 110 PVHTVPLSED 119
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 317 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 376
G + Y LG ++RKRY FL + Y H V + S D+DR + SA A L+PP+G++IWN
Sbjct: 42 GMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWN 101
Query: 377 DNVGRYYQPIPVRTLDAEND 396
+ +QPIPV T+ D
Sbjct: 102 PIL--LWQPIPVHTVPLSED 119
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 128 LVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPF----WLPYGCDQLRNKGKMRSYWLGL 183
L F +V RHGDR DP W P G QL G + Y LG
Sbjct: 3 LKFVTLVFRHGDR----------SPIDTFPTDPIKESSW-PQGFGQLTQLGMEQHYELGE 51
Query: 184 FMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPI 243
++RKRY FL + Y H V + S D+DR + SA A L+PP+G++IWN + +QPI
Sbjct: 52 YIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL--LWQPI 109
Query: 244 PVRTLDAEND 253
PV T+ D
Sbjct: 110 PVHTVPLSED 119
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 317 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 376
G + Y LG ++RKRY FL + Y H V + S D+DR + SA A L+PP+G++IWN
Sbjct: 42 GMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWN 101
Query: 377 DNVGRYYQPIPVRTLDAEND 396
+ +QPIPV T+ D
Sbjct: 102 PIL--LWQPIPVHTVPLSED 119
>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
Length = 342
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 125 NTTLVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPFWLPYGCDQLRNKGKMRSYWLGLF 184
++ L+F ++ RHGDR E P G +Q Y LGL
Sbjct: 5 SSKLIFVSMITRHGDR--APFANIENANYSWGTELSELTPIGMNQ--------EYNLGLQ 54
Query: 185 MRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDN---VGR 238
+RKRY G L + Y + + S+ +R + SA + GLYP + D +
Sbjct: 55 LRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKD 114
Query: 239 YYQPIPVRTLDAENDIYLNEDVHCVPYEMELA 270
+QPIP+ TL A++ + PYE LA
Sbjct: 115 RFQPIPIMTLSADSRLI------QFPYEQYLA 140
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 317 GKMRSYWLGLFMRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGIN 373
G + Y LGL +RKRY G L + Y + + S+ +R + SA + GLYP
Sbjct: 44 GMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGP 103
Query: 374 IWNDN---VGRYYQPIPVRTLDAENDI 397
+ D + +QPIP+ TL A++ +
Sbjct: 104 LIGDGDPAIKDRFQPIPIMTLSADSRL 130
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 125 NTTLVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPFWLPYGCDQLRNKGKMRSYWLGLF 184
++ L+F ++ RHGDR E P G +Q Y LGL
Sbjct: 5 SSKLIFVSMITRHGDR--APFANIENANYSWGTELSELTPIGMNQ--------EYNLGLQ 54
Query: 185 MRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDN---VGR 238
+RKRY G L + Y + + S+ +R + SA + GLYP + D +
Sbjct: 55 LRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKD 114
Query: 239 YYQPIPVRTLDAENDIYLNEDVHCVPYEMELA 270
+QPIP+ TL A++ + PYE LA
Sbjct: 115 RFQPIPIMTLSADSRLI------QFPYEQYLA 140
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 317 GKMRSYWLGLFMRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGIN 373
G + Y LGL +RKRY G L + Y + + S+ +R + SA + GLYP
Sbjct: 44 GMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGP 103
Query: 374 IWNDN---VGRYYQPIPVRTLDAENDI 397
+ D + +QPIP+ TL A++ +
Sbjct: 104 LIGDGDPAIKDRFQPIPIMTLSADSRL 130
>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
Length = 342
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 125 NTTLVFAEIVLRHGDRYKGXXXXXXXXXXXXSQEDPFWLPYGCDQLRNKGKMRSYWLGLF 184
++ L+F ++ R+GDR E P G +Q Y LGL
Sbjct: 5 SSKLIFVSMITRNGDR--APFANIENANYSWGTELSELTPIGMNQ--------EYNLGLQ 54
Query: 185 MRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDN---VGR 238
+RKRY G L + Y + + S+ +R + SA + GLYP + D +
Sbjct: 55 LRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKD 114
Query: 239 YYQPIPVRTLDAENDIYLNEDVHCVPYEMELA 270
+QPIP+ TL A++ + PYE LA
Sbjct: 115 RFQPIPIMTLSADSRLI------QFPYEQYLA 140
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 317 GKMRSYWLGLFMRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGIN 373
G + Y LGL +RKRY G L + Y + + S+ +R + SA + GLYP
Sbjct: 44 GMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGP 103
Query: 374 IWNDN---VGRYYQPIPVRTLDAENDI 397
+ D + +QPIP+ TL A++ +
Sbjct: 104 LIGDGDPAIKDRFQPIPIMTLSADSRL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,086,988
Number of Sequences: 62578
Number of extensions: 500304
Number of successful extensions: 1210
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 22
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)