RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy141
(399 letters)
>gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch
2). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches.The smaller branch 2 contains predominantly
eukaryotic proteins. The catalytic functions in members
include phytase, glucose-1-phosphatase and multiple
inositol polyphosphate phosphatase. The in vivo roles of
the mammalian acid phosphatases in branch 2 are not
fully understood, although activity against
lysophosphatidic acid and tyrosine-phosphorylated
proteins has been demonstrated.
Length = 327
Score = 88.7 bits (220), Expect = 1e-19
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 127 TLVFAEIVLRHGDRY--KGYDDDETYPYD----PYSQEDPFWLPYGC--DQLRNKGKMRS 178
L F ++V RHGDR K D + + + QL +G+ ++
Sbjct: 1 ELEFVQVVSRHGDRTPTKSLPKDPEAWPFKLLSEKHNDFLNKVQWPLGWGQLTPRGRAQA 60
Query: 179 YWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGR 238
+ LG ++R+RY G L D Y ++V + S+D +R + SA AGL+PP+G DN
Sbjct: 61 FELGRYLRQRYVGLLPDGYPPSEVYIRSSDSNRTLASAQAFLAGLFPPEG---DIDNDLL 117
Query: 239 YYQPIPVRTLDAEND 253
+QPIPV TL
Sbjct: 118 DWQPIPVVTLPEVKK 132
Score = 67.1 bits (164), Expect = 3e-12
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 317 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 376
G+ +++ LG ++R+RY G L D Y ++V + S+D +R + SA AGL+PP+G
Sbjct: 56 GRAQAFELGRYLRQRYVGLLPDGYPPSEVYIRSSDSNRTLASAQAFLAGLFPPEG---DI 112
Query: 377 DNVGRYYQPIPVRTLDAENDID 398
DN +QPIPV TL
Sbjct: 113 DNDLLDWQPIPVVTLPEVKKAL 134
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
histidine acid phosphatases and phytases; contains a His
residue which is phosphorylated during the reaction.
Catalytic domain of HAP (histidine acid phosphatases)
and phytases (myo-inositol hexakisphosphate
phosphohydrolases). The conserved catalytic core of this
domain contains a His residue which is phosphorylated in
the reaction. Functions in this subgroup include roles
in metabolism, signaling, or regulation, for example
Escherichia coli glucose-1-phosphatase functions to
scavenge glucose from glucose-1-phosphate and the
signaling molecules inositol 1,3,4,5,6-pentakisphosphate
(InsP5) and inositol hexakisphosphate (InsP6) are in
vivo substrates for eukaryotic multiple inositol
polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
phosphate from extracellular sources and are added to
animal feed while prostatic acid phosphatase (PAP) has
been used for many years as a serum marker for prostate
cancer. Recently PAP has been shown in mouse models to
suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 56.6 bits (137), Expect = 3e-09
Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 40/168 (23%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMR 186
L +++ RHGDRY G +L G+ +++ LG + R
Sbjct: 1 ELEQVQVLSRHGDRYPG-------------------------ELTPFGRQQAFELGRYFR 35
Query: 187 KRYNGFLKDE-YYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPV 245
+RY L Y +D+ + S+D R + SA AGL+PP +QPI V
Sbjct: 36 QRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPD-----------GWQPIAV 84
Query: 246 RTL-DAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLE 292
T+ + E+D+ D+ YE F + EYL
Sbjct: 85 HTIPEEEDDVSNLFDLC--AYETVAKGYSAPFCDLFTEEEWVKLEYLN 130
Score = 43.9 bits (104), Expect = 5e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 316 KGKMRSYWLGLFMRKRYNGFLKDE-YYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
G+ +++ LG + R+RY L Y +D+ + S+D R + SA AGL+PP
Sbjct: 22 FGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPD---- 77
Query: 375 WNDNVGRYYQPIPVRTLDAENDIDV 399
+QPI V T+ E + DV
Sbjct: 78 -------GWQPIAVHTI-PEEEDDV 94
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 38.9 bits (91), Expect = 0.001
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 133 IVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMRKRYNGF 192
++RHG+R + + + G Q R GK
Sbjct: 3 YLVRHGERE--PNAEGRFTGWGDGPLTEK----GRQQARELGK----------------A 40
Query: 193 LKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIW 232
L++ Y D +S L R I +A ++ GL+ + +
Sbjct: 41 LRERYIKFDRIYSS-PLKRAIQTAEIILEGLFEGLPVEVD 79
Score = 31.6 bits (72), Expect = 0.34
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 335 FLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIW 375
L++ Y D +S L R I +A ++ GL+ + +
Sbjct: 40 ALRERYIKFDRIYSS-PLKRAIQTAEIILEGLFEGLPVEVD 79
>gnl|CDD|185272 PRK15374, PRK15374, pathogenicity island 1 effector protein SipB;
Provisional.
Length = 593
Score = 33.4 bits (76), Expect = 0.24
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 23 DSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKELKLNKADETLTEEQLIKN 82
E V+ KE T+ K+ +DKA ++ K T + K KAD LT+ Q N
Sbjct: 177 ADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAG-TDAKAKAEKADNILTKFQGTAN 235
Query: 83 ALKFDKLQPSTQE 95
A ++ ++
Sbjct: 236 AASQNQ-VSQGEQ 247
>gnl|CDD|214369 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated.
Length = 156
Score = 31.1 bits (71), Expect = 0.47
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 8 KTKEKSDSKPRKEVKD---SASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKE 64
K E+ SK RKE + + + AKEI E+ +K ID K+L QKE
Sbjct: 77 KQYEQELSKARKEAQLEITQSQKEAKEI----VENELKQAQKYIDSLLNEATKQLEAQKE 132
Query: 65 LKLNKADE------TLTEEQLIKN 82
L +E EE+L+
Sbjct: 133 KALKSLEEQVDTLSDQIEEKLLIK 156
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.7 bits (73), Expect = 0.83
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 19 KEVKDSAS---QTAKEIG--VKSHSKEVTDDKKPIDKAPESHAKKLATQKELKLNKADET 73
KE+ S+ + KE+G VKSHS V +++ ++A ++ + E E
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70
Query: 74 LTEEQLIKNALKFDKLQPSTQEPPAPK 100
+ + A + + + A +
Sbjct: 71 EAKAEAAAAAPAEEAAEAAAAAEAAAR 97
>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase;
Provisional.
Length = 348
Score = 31.0 bits (70), Expect = 1.0
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 38/151 (25%)
Query: 224 YPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLK 283
Y P+GI+I+ DNVG LDA LN +H ++ + GM + N
Sbjct: 224 YFPEGIDIYFDNVGG-------DMLDAA---LLNMKIH--------GRIAVCGMVSLN-- 263
Query: 284 YKYVYEYLEMYTGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKD--EYY 341
+ + NL ++ I +R++ G ++S +L LF + FL++ YY
Sbjct: 264 --------SLSASQGIHNLYNL--ISKRIRMQ-GFLQSDYLHLFPQ-----FLENVSRYY 307
Query: 342 HNDVRLTSADLDRCIDSAHVMTAGLYPPKGI 372
+ D+ ++SA GL+ K +
Sbjct: 308 KQGKIVYIEDMSEGLESAPAALVGLFSGKNV 338
>gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase. This enzyme is part of the
diaminopimelate pathway of lysine biosynthesis.
Alternate name: tetrahydrodipicolinate
N-succinyltransferase. The closely related TabB protein
of Pseudomonas syringae (pv. tabaci) appears to act in
the biosynthesis of tabtoxin rather than lysine. The
trusted cutoff is set high enough to exclude this gene.
Sequences below trusted also include a version of this
enzyme which apparently utilize acetate rather than
succinate (EC: 2.3.1.89) [Amino acid biosynthesis,
Aspartate family].
Length = 269
Score = 29.1 bits (65), Expect = 3.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 231 IWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVP 264
+ N RY+ +P++ D + + VP
Sbjct: 72 VINGAENRYFDKVPMKFADYDEARFKKAGFRVVP 105
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 29.0 bits (65), Expect = 4.5
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 4 PHEFKTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQK 63
P F +E S R D + +A E + K P K ES K L T++
Sbjct: 228 PEPFNFQESHKSSSRTY-LDQENISAGE----ENLKPTRRKLPPSTKKWESLVKFLRTER 282
Query: 64 ELKLNKADETLTEEQLIKNALKF---DKLQPSTQEPPAPKILSVNAIDKTASNQTQQE 118
+ K K + E + K K Q PA K+ + ++E
Sbjct: 283 KEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKE 340
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 28.8 bits (65), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 186 RKRYNGFLKDEYYHNDVRLTSADLDRCIDSA 216
+R G KDEY+ + +T D+ ++SA
Sbjct: 96 LRRTIGLKKDEYFLDKKNVTKNDVMNLLESA 126
Score = 28.8 bits (65), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 329 RKRYNGFLKDEYYHNDVRLTSADLDRCIDSA 359
+R G KDEY+ + +T D+ ++SA
Sbjct: 96 LRRTIGLKKDEYFLDKKNVTKNDVMNLLESA 126
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 28.2 bits (63), Expect = 5.8
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 18 RKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKELKLNKADETLTEE 77
+K + D+ S KEI ++ +E KK + A ES KKL +EL K +
Sbjct: 40 KKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKL-KFEELDDLKITAENEIK 98
Query: 78 QLIKNALKFDKLQPSTQEPPAPKILSVNAIDKTASNQTQQEDDGTN 123
+ + S +E P L+ ++T Q D+
Sbjct: 99 SI---QDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPK 141
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 28.5 bits (64), Expect = 7.6
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 6 EFKTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKEL 65
KE K + K + S D + +LAT +
Sbjct: 628 ALSPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATH-QS 686
Query: 66 KLNKADETLTEEQLIKNALKFDKLQPSTQEPPAPKILSVNAIDKTASNQTQQEDDGTNVN 125
A + + +D+ P +E P + + N ++ +D +N
Sbjct: 687 VPEAALASGSAPAPPPVPDPYDR--PPWEEAPEVASANDGPNNAAEGNLSESVEDASNSE 744
Query: 126 TTLV 129
V
Sbjct: 745 LQAV 748
>gnl|CDD|184278 PRK13726, PRK13726, conjugal transfer pilus assembly protein TraE;
Provisional.
Length = 188
Score = 27.8 bits (62), Expect = 8.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 14 DSKPRKEVKDSASQTAKEIGVKS--HSKEVTDDKK 46
DSKP E+K +E GV + E D+KK
Sbjct: 154 DSKPFTEIKHYILILKRENGVTWLDNFGETDDEKK 188
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 27.7 bits (62), Expect = 9.8
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 8 KTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKELKL 67
K K+K K K+ + S + ++ + E+ K
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTEL----SSGAGQVGEAKKLKKKRSIAPDN 237
Query: 68 NKAD 71
K++
Sbjct: 238 EKSE 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.401
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,310,573
Number of extensions: 1954570
Number of successful extensions: 1720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 50
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)