RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy141
(399 letters)
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 117 bits (293), Expect = 7e-30
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Query: 123 NVNTTLVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLG 182
++ L+F ++ RHGDR P+ + W +L G + Y LG
Sbjct: 3 GYSSKLIFVSMITRHGDRA---------PFANIENANYSW-GTELSELTPIGMNQEYNLG 52
Query: 183 LFMRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWND---NV 236
L +RKRY G L + Y + + S+ +R + SA + GLYP + D +
Sbjct: 53 LQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAI 112
Query: 237 GRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMYTG 296
+QPIP+ TL A++ + + ++ +N + + + G
Sbjct: 113 KDRFQPIPIMTLSADSRLIQFPYEQYLA-VLKKYVYNSPEWQNKTKEAAPNFAKWQQILG 171
Query: 297 MSVSNLMDVARIYTTLRIEK 316
+S L DV + L + +
Sbjct: 172 NRISGLNDVITVGDVLIVAQ 191
Score = 65.9 bits (160), Expect = 4e-12
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 316 KGKMRSYWLGLFMRKRY---NGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGI 372
G + Y LGL +RKRY G L + Y + + S+ +R + SA + GLYP
Sbjct: 43 IGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTG 102
Query: 373 NIWND---NVGRYYQPIPVRTLDAENDI 397
+ D + +QPIP+ TL A++ +
Sbjct: 103 PLIGDGDPAIKDRFQPIPIMTLSADSRL 130
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 116 bits (292), Expect = 1e-29
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 128 LVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMRK 187
L F +V RHGDR +T+P DP + W P G QL G + Y LG ++RK
Sbjct: 3 LKFVTLVFRHGDRSP----IDTFPTDPIK--ESSW-PQGFGQLTQLGMEQHYELGEYIRK 55
Query: 188 RYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRT 247
RY FL + Y H V + S D+DR + SA A L+PP+G++IWN + +QPIPV T
Sbjct: 56 RYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILL--WQPIPVHT 113
Query: 248 LDAENDIYLNEDV-HCVPYEMELAKVL-LQGMKNFNLKYKYVYEYLEMYTGMSVSNLMDV 305
+ D L +C ++ ++ L + + YK L +G+ +L +
Sbjct: 114 VPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGI 173
Query: 306 AR-IYTTLRIE 315
+Y L E
Sbjct: 174 WSKVYDPLYCE 184
Score = 68.6 bits (167), Expect = 5e-13
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
+ G + Y LG ++RKRY FL + Y H V + S D+DR + SA A L+PP+G++I
Sbjct: 40 QLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSI 99
Query: 375 WNDNVGRYYQPIPVRTLDAEND 396
WN + +QPIPV T+ D
Sbjct: 100 WNPILL--WQPIPVHTVPLSED 119
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 93.5 bits (231), Expect = 3e-21
Identities = 32/237 (13%), Positives = 60/237 (25%), Gaps = 31/237 (13%)
Query: 125 NTTLVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLF 184
L IV R G R P + P W P L +G +LG +
Sbjct: 5 ELKLESVVIVSRAGVRAPTKATQLMQDVTPDAW--PTW-PVKLGWLTPRGGELIAYLGHY 61
Query: 185 MRKRY--NGFLKDEYYHN--DVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN----DNV 236
R+R +G L + V + + +R + AGL P I + +
Sbjct: 62 QRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQTDTSSP 121
Query: 237 GRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMYTG 296
+ P+ +N + + + +F + + LE
Sbjct: 122 DPLFNPLKTGVCQLDNANVTDAILSRAGGSIA----------DFTGHRQTAFRELERVLN 171
Query: 297 MSVS----------NLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHN 343
S + + + S + + +
Sbjct: 172 FPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQG 228
Score = 53.8 bits (128), Expect = 4e-08
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 316 KGKMRSYWLGLFMRKRY--NGFLKDEYYHN--DVRLTSADLDRCIDSAHVMTAGLYPPKG 371
+G +LG + R+R +G L + V + + +R + AGL P
Sbjct: 50 RGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCA 109
Query: 372 INIWN----DNVGRYYQPIPVRTLDAEND 396
I + + + P+ +N
Sbjct: 110 ITVHTQTDTSSPDPLFNPLKTGVCQLDNA 138
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 88.0 bits (217), Expect = 2e-19
Identities = 29/222 (13%), Positives = 58/222 (26%), Gaps = 16/222 (7%)
Query: 125 NTTLVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLF 184
+ L + RHG R + E W +L G G
Sbjct: 13 DWQLEKVVELSRHGIRPPTAGNREAIEAATGRPW-TEW-TTHDGELTGHGYAAVVNKGRE 70
Query: 185 MRKRY--NGFLKDEYY-HNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQ 241
+ Y G L+ + + ++ L R +A + G +P G+ I N
Sbjct: 71 EGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPL 130
Query: 242 PIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMYTGMSVSN 301
+ + D ++ K + + L+ +
Sbjct: 131 FQTDKFAATQTD---------PARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQA-DK 180
Query: 302 LMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHN 343
+ + K ++ GL + L+ + N
Sbjct: 181 PCPIFDTPWRVEQSKSG-KTTISGLSVMANMVETLRLGWSEN 221
Score = 55.3 bits (132), Expect = 2e-08
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 315 EKGKMRSYWLGLFMRKRY--NGFLKDEYY-HNDVRLTSADLDRCIDSAHVMTAGLYPPKG 371
G G + Y G L+ + + ++ L R +A + G +P G
Sbjct: 58 GHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117
Query: 372 INIWNDNVGRYYQPIPVRTLDAEND 396
+ I N + + D
Sbjct: 118 VAIHYANGDADPLFQTDKFAATQTD 142
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 86.9 bits (214), Expect = 7e-19
Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 34/234 (14%)
Query: 125 NTTLVFAEIVLRHGDRYKGYDDDETYPYDPYSQED-PFWLPYGCDQLRNKGKMRSYWLGL 183
L I+ R R + + + + P W QL KG + ++G
Sbjct: 4 GYQLEQVLIMSRANLRAP--LANNGSVLEQSTPKQWPEW-EVPGGQLTTKGGVLEVYMGH 60
Query: 184 FMRKRY--NGFLKDE--YYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN----DN 235
+MR+ G +K + V + L R + +A G +P + + +
Sbjct: 61 YMREWLAQQGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGT 120
Query: 236 VGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMYT 295
+ + P+ + L + ++ Y+ LE T
Sbjct: 121 MDPTFNPVITDNSPEFREKALKA----------------METERQKMQLTESYKLLEQMT 164
Query: 296 GMSVS------NLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHN 343
+ S + +A T + K L + +YY
Sbjct: 165 NYADSPSCKEKKVCSLADAKDTFSADYEKEPGVSGPLKVGNSLVDAFTLQYYEG 218
Score = 56.0 bits (134), Expect = 8e-09
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 315 EKGKMRSYWLGLFMRKRY--NGFLKDE--YYHNDVRLTSADLDRCIDSAHVMTAGLYPPK 370
KG + ++G +MR+ G +K + V + L R + +A G +P
Sbjct: 49 TKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGC 108
Query: 371 GINIWNDNVGRYYQPI--PVRTLDAENDID 398
+ + + P PV T ++ +
Sbjct: 109 DVPVHHQEKMGTMDPTFNPVITDNSPEFRE 138
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 77.3 bits (189), Expect = 1e-15
Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDE-------------TYPYDPYSQEDPFWLPYGCDQLRNK 173
+ FA+++ RHG RY + T Y+ + G D L
Sbjct: 49 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPF 108
Query: 174 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 233
G+ G+ +RY ++ + S+ R I S G K +
Sbjct: 109 GEQELVNSGIKFYQRYESLTRNIVP----FIRSSGSSRVIASGKKFIEGFQSTKLKDPRA 164
Query: 234 DNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLK--YKYVYEYL 291
+ V + + ++ L+ V + ELA + + + + L
Sbjct: 165 QPGQSSPKIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTATFVPSIRQRLENDL 224
Query: 292 EMY--TGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVR 346
T V+ LMD+ T S + LF + + Y ++
Sbjct: 225 SGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLF----THDEWINYDYLQSLK 277
Score = 47.2 bits (111), Expect = 5e-06
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
G+ G+ +RY ++ + S+ R I S G K +
Sbjct: 107 PFGEQELVNSGIKFYQRYESLTRNIVP----FIRSSGSSRVIASGKKFIEGFQSTKLKDP 162
Query: 375 WNDNVGRYYQPIPV 388
+ V
Sbjct: 163 RAQPGQSSPKIDVV 176
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 76.1 bits (186), Expect = 3e-15
Identities = 36/238 (15%), Positives = 68/238 (28%), Gaps = 26/238 (10%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDE-------------TYPYDPYSQEDPFWLPYGCDQLRNK 173
+ +++ RHG RY + T ++ + G D L
Sbjct: 48 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPF 107
Query: 174 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 233
G+ + G+ +RY + + ++ DR I S G K +
Sbjct: 108 GEQQLVNSGIKFYQRYKALARSVVP----FIRASGSDRVIASGEKFIEGFQQAKLADPGA 163
Query: 234 DNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLK--YKYVYEYL 291
N + + + N+ L+ V +L + ++L
Sbjct: 164 TNRAAPAISVIIPESETFNN-TLDHGVCTKFEASQLGDEVAANFTALFAPDIRARAEKHL 222
Query: 292 EMY--TGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRL 347
T V +LMD+ T R S + LF + + Y +
Sbjct: 223 PGVTLTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKY----NYLQSLGK 276
Score = 47.6 bits (112), Expect = 5e-06
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
G+ + G+ +RY + + ++ DR I S G K +
Sbjct: 106 PFGEQQLVNSGIKFYQRYKALARSVVP----FIRASGSDRVIASGEKFIEGFQQAKLADP 161
Query: 375 WNDNVGRYYQPIPVRTLDAENDI 397
N + + + N+
Sbjct: 162 GATNRAAPAISVIIPESETFNNT 184
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 65.7 bits (159), Expect = 7e-12
Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 43/247 (17%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETY----------------PYDPYSQEDPFWLPY----- 165
TL ++ RHG+RY + Y + + +++P
Sbjct: 60 TLEQVQLFSRHGERYPSTGSGKKYKAVYEKLMSYNGTFKGELAFLNDDYEYFVPDSVYLE 119
Query: 166 -----GCDQLRNKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMT 220
G + G+ R +Y ++ + + +++ R ++
Sbjct: 120 KETSPKNSDSIYAGTTDAMKHGIAFRTKYGELFDT---NDTLPVFTSNSGRVYQTSQYFA 176
Query: 221 AGLYPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNF 280
G N I N + + C Y ++
Sbjct: 177 RGFMGDDFSNDTV-----KTNIISEDADMGANSLTPRD--GCFNYNENANTAIVDEYTTE 229
Query: 281 NLKYKYVYEYLEMYTGMSVSNLMDVARIYTTLRIEK-GKMRSYWLGLFMRKRYNGFLKDE 339
L K + + G++++ DV+ ++ E K S +F + + +
Sbjct: 230 YLT-KALNRFKASNPGLNITE-DDVSNLFGYCAYELNVKGASPMCDIFTNEEFIQY---- 283
Query: 340 YYHNDVR 346
Y D+
Sbjct: 284 SYSVDLD 290
Score = 46.0 bits (108), Expect = 2e-05
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 316 KGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIW 375
G + G+ R +Y ++ + + +++ R ++ G N
Sbjct: 132 AGTTDAMKHGIAFRTKYGELFDT---NDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDT 188
Query: 376 NDNVGRYYQPIPVRTLDAENDI 397
I N +
Sbjct: 189 V-----KTNIISEDADMGANSL 205
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 61.8 bits (149), Expect = 1e-10
Identities = 32/243 (13%), Positives = 58/243 (23%), Gaps = 43/243 (17%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETY----------------------PYDPYSQEDPFWLP 164
+ +V RHG+RY + Y + +
Sbjct: 53 EVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYN 112
Query: 165 YGCDQLRNKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLY 224
G + +Y G + RY E V S+ R I++A G +
Sbjct: 113 AETTSGPYAGLLDAYNHGNDYKARYGHLWNGE---TVVPFFSSGYGRVIETARKFGEGFF 169
Query: 225 PPKGINIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKY 284
I + D + + + + ++
Sbjct: 170 GYNYSTNAA------LNIISESE-------VMGADSLTPTCDTDNDQTTCDNLTYQLPQF 216
Query: 285 KYVYEYLEMYTGMSVSNLMDVARIYTTLRIEK-GKMRSYWLGLFMRKRYNGFLKDEYYHN 343
K L DV + E + S W+ F + + F Y
Sbjct: 217 KVAAARLNSQNPGMNLTASDVYNLMVMASFELNARPFSNWINAFTQDEWVSFG----YVE 272
Query: 344 DVR 346
D+
Sbjct: 273 DLN 275
Score = 46.0 bits (108), Expect = 2e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 268 ELAKVLLQGMKNFNLKYKYVYEYLEMYTGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLF 327
++ + L + +YK +L +T V N T+ G + +Y G
Sbjct: 75 DIEEALAKVYSINTTEYKGDLAFLNDWT-YYVPNECYYNAETTSGPYA-GLLDAYNHGND 132
Query: 328 MRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNV 379
+ RY E V S+ R I++A G + N+
Sbjct: 133 YKARYGHLWNGE---TVVPFFSSGYGRVIETARKFGEGFFGYNYSTNAALNI 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 51/378 (13%), Positives = 105/378 (27%), Gaps = 121/378 (32%)
Query: 20 EVKDSASQTAKEIGVK----SHSKEVTDDKKPIDKAPESHAKKLATQKELKLNKADETLT 75
V+++ + A + K + K+VTD AT + L+ TLT
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA------------ATTTHISLDHHSMTLT 299
Query: 76 EEQLIKNALKFDKLQPSTQEPPAPKILSVN--AIDKTASNQTQQEDDGTNVNTTLVFAEI 133
+++ LK+ L Q+ P ++L+ N + + AE
Sbjct: 300 PDEVKSLLLKY--LDCRPQDLP-REVLTTNPRRLS--------------------IIAES 336
Query: 134 VLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKM-----------RSYW-L 181
+ + W CD+L + + + L
Sbjct: 337 IRDGLATWD------------------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 182 GLFMRKRYNGFLKDEYYHNDVRLTSADLDRCI-------DSAHVMTAGLYPPKGINIWND 234
+F + + L + V+ L+ +
Sbjct: 379 SVFP--------------PSAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 235 NVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLL---QGMKNFNLKY------- 284
IP IYL V E L + ++ K F+
Sbjct: 423 E-STIS--IP--------SIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 285 KYVYEYLEMY--TGMSVSNLMDVAR-IYTTLRIEKGKMRSYWLGLFMRKRYNGFLKD-EY 340
+Y Y ++ + + M + R ++ R + K+R L+ ++
Sbjct: 471 QYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 341 YHNDVRLTSADLDRCIDS 358
Y + +R +++
Sbjct: 530 YKPYICDNDPKYERLVNA 547
Score = 30.2 bits (67), Expect = 1.4
Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 60/208 (28%)
Query: 161 FWLPYGCDQLRNKGK-MRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVM 219
FW L +K + M ++ +R Y FL + R S I+ +
Sbjct: 68 FWT------LLSKQEEMVQKFVEEVLRINY-KFLMSPI-KTEQRQPSMMTRMYIEQRDRL 119
Query: 220 TAGLYPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAK-VLLQGMK 278
+NDN + + V L L + + E+ AK VL+ G+
Sbjct: 120 ------------YNDN--QVFAKYNVSRLQPYLK--LRQAL----LELRPAKNVLIDGVL 159
Query: 279 -------------NFNLKYKY---VY-----------EYLEMYTGMSV---SNLMDVARI 308
++ ++ K ++ LEM + N +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 309 YTTLRIEKGKMRSYWLGLFMRKRYNGFL 336
+ +++ +++ L K Y L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 48/292 (16%), Positives = 88/292 (30%), Gaps = 100/292 (34%)
Query: 133 IVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYG----CDQLRNKGKMRSYWLGLFMRKR 188
+ L HG S E +P QL+ +
Sbjct: 9 LTLSHG-----------------SLEHVLLVPTASFFIASQLQEQ--------------- 36
Query: 189 YNGFLK------DEYYHNDVRLTSADLDRCIDSAHVM--TAGLYPPKGINIWNDNVGRYY 240
F K + + +D T A+L + + L P VG++
Sbjct: 37 ---FNKILPEPTEGFAADDEPTTPAEL-----VGKFLGYVSSLVEP-------SKVGQFD 81
Query: 241 QPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEM------- 293
Q + + + EN D+H + AK+L + + + Y+
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 294 YTGMSVSNLMDV-----ARIYTTLRI--EKGKMRSYW--L-GLFMRKRYNGFLKDEYYHN 343
+ S S L A++ I +G Y+ L L+ + Y+ + D
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVA---IFGGQGNTDDYFEELRDLY--QTYHVLVGDL---- 187
Query: 344 DVRLTSADLDRCIDSAHVMTAGLYPPKGINI--WNDNVGR-----YYQPIPV 388
++ ++ L + A +G+NI W +N Y IP+
Sbjct: 188 -IKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 81 KNALKFDKLQPSTQ--EP-PAPKILSVNA 106
K ALK KLQ S + AP L++ A
Sbjct: 19 KQALK--KLQASLKLYADDSAPA-LAIKA 44
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 36.1 bits (82), Expect = 0.022
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 5 HEFKTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKE 64
H+F+ + + + EV D + + ++ K+ A + K T +
Sbjct: 30 HDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAKPETPKTVTPEW 89
Query: 65 LKLNKADETLTEEQLIKNALKFDKLQPSTQEPPAPKILSVNAIDKTASNQTQQEDDGTNV 124
+ K ++ T + +++++L + Q A K + D N
Sbjct: 90 QTVEKKEQQGTVTIREEKGVRYNQLSSTAQNDNAGK-------PALFEKKGLTVDANGNA 142
Query: 125 NTTLVFAEIVLRHGDR---YKGYDDDETYPYDPYSQEDPFWLPYG 166
L F + + R + + D + + Y ++ FW
Sbjct: 143 TVDLTFKDDSEKGKSRFGVFLKFKDTKNNVFVGYDKDGWFWEYKS 187
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.056
Identities = 9/78 (11%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 5 HEFKTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLATQKE 64
E K + + + R + D+AS+ ++ + K+ +++ + ++++ +K
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-------LEEWNQRQSEQV--EKN 134
Query: 65 LKLNKADETLTEEQLIKN 82
N+ ++ +
Sbjct: 135 KINNRIA----DKAFYQQ 148
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase,
protein SELF-processing; 1.29A {Escherichia coli} SCOP:
b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A
1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Length = 143
Score = 30.3 bits (68), Expect = 0.60
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 202 VRLTSADLDR----CIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLN 257
V++T ADL ID + AG+ + I+IWN G+ + + I +N
Sbjct: 30 VKVTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVN 89
Score = 27.2 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 345 VRLTSADLDR----CIDSAHVMTAGLYPPKGINIWNDNVGRYYQP 385
V++T ADL ID + AG+ + I+IWN G+ +
Sbjct: 30 VKVTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFST 74
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 30.8 bits (69), Expect = 0.95
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 2 KTPHEFKTKEKSDSKPRKEVKDSASQTAKEIGVKSHSKEVTDDKKPIDKAPESHAKKLAT 61
K + + + P SA+ TA K + + +
Sbjct: 51 KAAGGQRVTAEVEVAPITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELI 110
Query: 62 QKELKLNKADETLTEEQLIKNALKFDKLQPSTQEPPAP--KILSVN 105
+ L + +E+++ + + F + + P+ K ++ N
Sbjct: 111 RTAEALAALNAKKSEKEIWSDVVPFVRRTTDSDFDPSRMYKFITWN 156
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for
structural genomics of infec diseases, csgid, double-PSI
beta barrel; HET: MSE; 1.55A {Francisella tularensis
subsp}
Length = 114
Score = 29.0 bits (65), Expect = 1.1
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 202 VRLTSADLDR----CIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLN 257
+T DL IDS + A + + + + N N G + ++ I LN
Sbjct: 16 ATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALN 75
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase,
zymogen, pantothenate biosynthesis, pyruvate; 2.99A
{Mycobacterium tuberculosis}
Length = 139
Score = 29.1 bits (65), Expect = 1.2
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 202 VRLTSADLDR----CIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRTLDAENDIYLN 257
+T ADL ID+ + A L + + I + + G + I +N
Sbjct: 13 ATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGIN 72
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bacteroides thetaiotaomicron}
Length = 212
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 241 QPIPVRTLDAENDIYLNEDVHCVPYE----MELAKVLLQGMKNFN 281
+ AE ++ ++ +PY ELAK +++ M N
Sbjct: 107 NKPTNFNVTAEIPCHVGSEIPVIPYYRPGSPELAKAVVEAMLKHN 151
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: b.55.1.11
Length = 133
Score = 27.9 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 291 LEMYTGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGF 335
+E Y G++V + D +R Y +RI+ G RS ++G+ R + F
Sbjct: 74 VEQYPGIAVETVTDSSR-YFVIRIQDGTGRSAFIGIGFTDRGDAF 117
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 27.8 bits (62), Expect = 6.5
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 18/70 (25%)
Query: 222 GLYPPKG----------INIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYE-MEL- 269
G+YP KG + IW + + + + + + + P+E +E+
Sbjct: 432 GMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKL---MEHNCDYTPFEGIEIK 488
Query: 270 ---AKVLLQG 276
+++G
Sbjct: 489 NWPRYTIVKG 498
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.6 bits (62), Expect = 7.0
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 17/38 (44%)
Query: 147 DETYPYDPYSQEDPFWLPYGC-----DQLRNKGKMRSY 179
DE+ D +S PYGC DQ M Y
Sbjct: 154 DESTQLDFHS-------PYGCSKGAADQY-----MLDY 179
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
octameric RUVA, AAA-ATPase domain, complex with
nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
thermophilus} SCOP: a.60.2.1 b.40.4.2
Length = 191
Score = 27.2 bits (61), Expect = 7.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 66 KLNKADETLTEEQLIKNALK 85
L + + LIK ALK
Sbjct: 169 DLLAQNPKARAQDLIKEALK 188
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 27.2 bits (61), Expect = 7.8
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 66 KLNKADETLTEEQLIKNALK 85
+ A+ T +++AL
Sbjct: 187 TVLAANHDATTSSALRSALS 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.401
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,165,059
Number of extensions: 371554
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 47
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)