RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy141
(399 letters)
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 107 bits (267), Expect = 8e-27
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 128 LVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMRK 187
L F +V RHGDR +T+P DP + W P G QL G + Y LG ++RK
Sbjct: 3 LKFVTLVFRHGDRS----PIDTFPTDPIK--ESSW-PQGFGQLTQLGMEQHYELGEYIRK 55
Query: 188 RYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQPIPVRT 247
RY FL + Y H V + S D+DR + SA A L+PP+G++IWN + +QPIPV T
Sbjct: 56 RYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILL--WQPIPVHT 113
Query: 248 LDAENDIYLNEDVH-CVPYEMELAKVLLQ-GMKNFNLKYKYVYEYLEMYTGMSVSNLMDV 305
+ D L C ++ ++ L + YK L +G+ +L +
Sbjct: 114 VPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGI 173
Query: 306 A-RIYTTLRIE 315
++Y L E
Sbjct: 174 WSKVYDPLYCE 184
Score = 68.7 bits (167), Expect = 2e-13
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
+ G + Y LG ++RKRY FL + Y H V + S D+DR + SA A L+PP+G++I
Sbjct: 40 QLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSI 99
Query: 375 WNDNVGRYYQPIPVRTLDAEND 396
WN + +QPIPV T+ D
Sbjct: 100 WNPILL--WQPIPVHTVPLSED 119
>d1dkla_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Escherichia coli [TaxId: 562]}
Length = 409
Score = 87.8 bits (216), Expect = 1e-19
Identities = 30/229 (13%), Positives = 57/229 (24%), Gaps = 19/229 (8%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFMR 186
L IV RHG R P P W P L +G +LG + R
Sbjct: 6 KLESVVIVSRHGVRAPTKATQLMQDVTPD--AWPTW-PVKLGWLTPRGGELIAYLGHYQR 62
Query: 187 KRYNGFLK----DEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN----DNVGR 238
+R V + + +R + AGL P I + +
Sbjct: 63 QRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDP 122
Query: 239 YYQPIPVRTLDAENDIYLNEDV----HCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMY 294
+ P+ +N + + + + + ++ L + L+
Sbjct: 123 LFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERV-LNFPQSNLCLKRE 181
Query: 295 TGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHN 343
+L + + + M +
Sbjct: 182 KQDESCSLTQALPSELKVSADNVSLTGAVSLASM---LTEIFLLQQAQG 227
Score = 53.5 bits (127), Expect = 2e-08
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLK----DEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPK 370
+G +LG + R+R V + + +R + AGL P
Sbjct: 48 PRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDC 107
Query: 371 GINIWN----DNVGRYYQPIPVRTLDAEND 396
I + + + P+ +N
Sbjct: 108 AITVHTQADTSSPDPLFNPLKTGVCQLDNA 137
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 86.9 bits (214), Expect = 3e-19
Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 26/228 (11%)
Query: 127 TLVFAEIVLRHGDRY------KGYDD-------DETYPYDPYSQEDPFWLPYGCDQLRNK 173
+ +++ RHG RY K Y + T ++ + G D L
Sbjct: 42 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPF 101
Query: 174 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 233
G+ + G+ +RY + ++ DR I S G K +
Sbjct: 102 GEQQLVNSGIKFYQRYKAL----ARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGA 157
Query: 234 DNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEM 293
N R I V ++E + C +E L + E
Sbjct: 158 TN--RAAPAISVIIPESETFNNTLDHGVCTKFE-ASQLGDEVAANFTALFAPDIRARAEK 214
Query: 294 YTGMSVSNLMDVARIYTTLRIEK------GKMRSYWLGLFMRKRYNGF 335
+ DV + + S + LF + +
Sbjct: 215 HLPGVTLTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKY 262
Score = 54.1 bits (129), Expect = 1e-08
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
G+ + G+ +RY + ++ DR I S G K +
Sbjct: 100 PFGEQQLVNSGIKFYQRYKAL----ARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADP 155
Query: 375 WNDNVGRYYQPIPVRTLDAENDID 398
N R I V ++E +
Sbjct: 156 GATN--RAAPAISVIIPESETFNN 177
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 83.0 bits (204), Expect = 5e-18
Identities = 38/218 (17%), Positives = 66/218 (30%), Gaps = 21/218 (9%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETYPY-------------DPYSQEDPFWLPYGCDQLRNK 173
+ FA+++ RHG RY + Y Y+ + G D L
Sbjct: 43 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPF 102
Query: 174 GKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWN 233
G+ G+ +RY + + S+ R I S G K +
Sbjct: 103 GEQELVNSGIKFYQRYESL----TRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKDPRA 158
Query: 234 DNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLK--YKYVYEYL 291
+ V + + ++ L+ V + ELA + + + + L
Sbjct: 159 QPGQSSPKIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTATFVPSIRQRLENDL 218
Query: 292 EMY--TGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLF 327
T V+ LMD+ T S + LF
Sbjct: 219 SGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLF 256
Score = 52.2 bits (124), Expect = 6e-08
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 315 EKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINI 374
G+ G+ +RY + + S+ R I S G K +
Sbjct: 101 PFGEQELVNSGIKFYQRYESL----TRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKDP 156
Query: 375 WNDNVGRYYQPIPV 388
+ V
Sbjct: 157 RAQPGQSSPKIDVV 170
>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 81.6 bits (200), Expect = 1e-17
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 18/224 (8%)
Query: 127 TLVFAEIVLRHGDRYKGYDD-DETYPYDPYSQEDPFWLPYGCDQLRNKGKMRSYWLGLFM 185
L ++ R R ++ P + P W QL KG + ++G +M
Sbjct: 8 QLQQVLMMSRANLRAPLANNGSVLEQSTPN--KWPEW-DVPGGQLTTKGGVLEVYMGHYM 64
Query: 186 RKRYNGF----LKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNVGRYYQ 241
R+ + V + L R + +A G +P I + + +
Sbjct: 65 REWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVH--HQEKMGT 122
Query: 242 PIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKYKYVYEYLEMYTGMS--V 299
P +D + E EL+K+ Y+ + + + +
Sbjct: 123 MDPTFNPVITDDSAAFSEQAVAAMEKELSKL------QLTDSYQLLEKIVNYKDSPACKE 176
Query: 300 SNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGFLKDEYYHN 343
+ T + + L + +YY
Sbjct: 177 KQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEG 220
Score = 51.9 bits (123), Expect = 6e-08
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 315 EKGKMRSYWLGLFMRKRYNGF----LKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPK 370
KG + ++G +MR+ + V + L R + +A G +P
Sbjct: 51 TKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGC 110
Query: 371 GINIWN----DNVGRYYQPIPVRTLDAEND 396
I + + + + P+ A ++
Sbjct: 111 DIPVHHQEKMGTMDPTFNPVITDDSAAFSE 140
>d1qfxa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus niger [TaxId: 5061]}
Length = 447
Score = 71.7 bits (175), Expect = 3e-14
Identities = 32/244 (13%), Positives = 60/244 (24%), Gaps = 42/244 (17%)
Query: 127 TLVFAEIVLRHGDRYKGYDDDETYPYDP----------------------YSQEDPFWLP 164
+ +V RHG+RY + Y + +
Sbjct: 40 EVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYN 99
Query: 165 YGCDQLRNKGKMRSYWLGLFMRKRYNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLY 224
G + +Y G + RY E V S+ R I++A G +
Sbjct: 100 AETTSGPYAGLLDAYNHGNDYKARYGHLWNGET---VVPFFSSGYGRVIETARKFGEGFF 156
Query: 225 PPKGINIWNDNVGRYYQPIPVRTLDAENDIYLNEDVHCVPYEMELAKVLLQGMKNFNLKY 284
++ N I + D + + + + ++
Sbjct: 157 GYN----YSTNA--ALNIIS-------ESEVMGADSLTPTCDTDNDQTTCDNLTYQLPQF 203
Query: 285 KYVYEYLEMYTGMSVSNLMDVARIYTTLRIEK-GKMRSYWLGLFMR---KRYNGFLKDEY 340
K L DV + E + S W+ F + + Y
Sbjct: 204 KVAAARLNSQNPGMNLTASDVYNLMVMASFELNARPFSNWINAFTQDEWVSFGYVEDLNY 263
Query: 341 YHND 344
Y+
Sbjct: 264 YYCA 267
Score = 44.7 bits (105), Expect = 1e-05
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 273 LLQGMKNFN-LKYKYVYEYLEMYTGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKR 331
L + + N +YK +L +T V N T+ G + +Y G + R
Sbjct: 66 ALAKVYSINTTEYKGDLAFLNDWT-YYVPNECYYNAETTSG-PYAGLLDAYNHGNDYKAR 123
Query: 332 YNGFLKDEYYHNDVRLTSADLDRCIDSAHVMTAGLYPPKGINIWNDNV 379
Y E V S+ R I++A G + N+
Sbjct: 124 YGHLWNGET---VVPFFSSGYGRVIETARKFGEGFFGYNYSTNAALNI 168
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate
decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Length = 121
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 202 VRLTSADLDR---CIDSAHVMTAGLYPPKGINIWNDNVGRYYQP 242
+T A+L+ ID A L + I + N G +
Sbjct: 13 ATITDANLNYIGITIDEDLAKLAKLREGMKVEIVDVNNGERFST 56
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 345 VRLTSADLDR---CIDSAHVMTAGLYPPKGINIWNDNVGRYYQP 385
+T A+L+ ID A L + I + N G +
Sbjct: 13 ATITDANLNYIGITIDEDLAKLAKLREGMKVEIVDVNNGERFST 56
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 133
Score = 26.6 bits (59), Expect = 2.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 294 YTGMSVSNLMDVARIYTTLRIEKGKMRSYWLGLFMRKRYNGF 335
Y G++V + D +R Y +RI+ G RS ++G+ R + F
Sbjct: 77 YPGIAVETVTDSSR-YFVIRIQDGTGRSAFIGIGFTDRGDAF 117
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 25.0 bits (55), Expect = 3.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 70 ADETLTEEQLIKNALK 85
A + E LI+ AL+
Sbjct: 30 ARPDASSETLIREALR 45
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.0 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 121 GTNVNTTLVFAEIVLRHGDR 140
T VN LV +VL+ G+R
Sbjct: 70 ETYVNGKLVTEPLVLKSGNR 89
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.8 bits (56), Expect = 9.8
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 53 ESHAKKLATQKELKLNKADETLTEEQLIKNALKFDKLQPSTQEPPAPKILS 103
A + +++ L K +TEE L + A ++L+ + P P+ L
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALR 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.401
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,522,032
Number of extensions: 73462
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 23
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)