BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1410
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMB|A Chain A, Structures Of Mitd1
pdb|2YMB|B Chain B, Structures Of Mitd1
pdb|2YMB|C Chain C, Structures Of Mitd1
pdb|2YMB|D Chain D, Structures Of Mitd1
Length = 257
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + + +R+KI Y++RAE
Sbjct: 23 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 82
Query: 68 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 127
+K LD++K+ G YH+QI+I N G +YE LF +L+E V ++ + DPYI + HQ YNF
Sbjct: 83 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 142
Query: 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187
L+FCE+ IK VK I+LLT+ + +V+Q L++++ESLR + L + Y
Sbjct: 143 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 196
Query: 188 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 241
S+++HDREI +N W+IKIGRGLD F P+ FS+G+ D LRPC ET V+IFH+
Sbjct: 197 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 251
>pdb|4A5Z|A Chain A, Structures Of Mitd1
pdb|4A5Z|B Chain B, Structures Of Mitd1
pdb|4A5Z|C Chain C, Structures Of Mitd1
pdb|4A5Z|D Chain D, Structures Of Mitd1
Length = 163
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 9/160 (5%)
Query: 83 EQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVK 142
+QI+I N G +YE LF +L+E V ++ + DPYI + HQ YNFL+FCE IK VK
Sbjct: 10 DQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEXLIKRPCKVK 69
Query: 143 RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDW 202
I+LLT+ + +V+Q L++++ESLR + L + YS+++HDREI +N W
Sbjct: 70 TIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGW 123
Query: 203 VIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 240
IKIGRGLD F P+ FS+G+ D LRPC ET V+IFH
Sbjct: 124 XIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFH 162
>pdb|4A5X|A Chain A, Structures Of Mitd1
pdb|4A5X|B Chain B, Structures Of Mitd1
Length = 86
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + + +R+KI Y++RAE
Sbjct: 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 75
Query: 68 LKGKLDEKK 76
+K LD++K
Sbjct: 76 IKKYLDQEK 84
>pdb|1WFD|A Chain A, Solution Structure Of Mouse Mit Domain
Length = 93
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + +R KI Y++RAE
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74
Query: 68 LKGKLDEKKKMG 79
+K LD++K+ G
Sbjct: 75 IKKYLDQEKEDG 86
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRAEVL 68
L +A + D+ G + E+L YQ V L HV +GD+ Q IR K Y++RAE L
Sbjct: 17 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRAEKL 75
Query: 69 KGKLDEKKK 77
K L K+K
Sbjct: 76 KEYLKNKEK 84
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRAEVL 68
L +A + D+ G + E+L YQ V L HV +GD+ Q IR K Y++RAE L
Sbjct: 21 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRAEKL 79
Query: 69 KGKLDEKKK 77
K L K+K
Sbjct: 80 KEYLKNKEK 88
>pdb|2JQ9|A Chain A, Vps4a Mit-Chmp1a Complex
pdb|2K3W|A Chain A, Nmr Structure Of Vps4a-Mit-Chmp6
Length = 84
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR--GLSNKGDQQKIRDKIET 60
S+++ A L+ +A E D+ + E+L YQ V L ++ S+K ++ IR K
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKA-KESIRAKCVQ 62
Query: 61 YINRAEVLKGKLDEKKKMGN 80
Y++RAE LK L K+K G
Sbjct: 63 YLDRAEKLKDYLRSKEKHGK 82
>pdb|2V6X|A Chain A, Stractural Insight Into The Interaction Between
Escrt-Iii And Vps4
Length = 85
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 1 MASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET 60
+ IEL Q +A++LD ++ E+ T Y +G+ L ++ N + IR K
Sbjct: 10 LTKGIELVQ----KAIDLDTATQYEEAYTAYYNGLDYLXLALKYEKNPKSKDLIRAKFTE 65
Query: 61 YINRAEVLKGKLD 73
Y+NRAE LK L+
Sbjct: 66 YLNRAEQLKKHLE 78
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 48 KGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDEN 107
+GD +++ D T+ N + L GK+D K+ +GNY + + I KG ++LF RF N
Sbjct: 22 QGDTRRV-DLPHTW-NAQDALAGKIDYKRGIGNYEKALYIRPEWKG---KRLFLRFDGVN 76
Query: 108 VEQIDVTDPYIHNKH 122
+ D +I+ KH
Sbjct: 77 ----SIADVFINRKH 87
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRA 65
L +A + D+ G + E+L YQ V L HV +GD+ Q IR K Y++RA
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRA 69
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 16 VELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ 51
V + + G W ES +F DG+ E+ K +G+ G Q
Sbjct: 28 VAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQ 63
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 160 TARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGL 210
A +K NL +L S + N + +NT H RE+ L+N+ ++K+ GL
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 160 TARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGL 210
A +K NL +L S + N + +NT H RE+ L+N+ ++K+ GL
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 35 VTELLKHVRGLSNKGDQQKIRDKIETYI-NRAEVLKGKLDEKKKMGNYHEQIEIANNEKG 93
V ELL + G + + D + I T + N+ +L G ++E + ++H +I + E
Sbjct: 27 VEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEE---IYHFHNRIFLRELESC 83
Query: 94 VTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFC 131
+ +L GR E +E+ + + Y NK + + + C
Sbjct: 84 IDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQC 121
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 35 VTELLKHVRGLSNKGDQQKIRDKIETYI-NRAEVLKGKLDEKKKMGNYHEQIEIANNEKG 93
V ELL + G + + D + I T + N+ +L G ++E + ++H +I + E
Sbjct: 27 VEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEE---IYHFHNRIFLRELESC 83
Query: 94 VTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFC 131
+ +L GR E +E+ + + Y NK + + + C
Sbjct: 84 IDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQC 121
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 35 VTELLKHVRGLSNKGDQQKIRDKIETYI-NRAEVLKGKLDEKKKMGNYHEQIEIANNEKG 93
V ELL + G + + D + I T + N+ +L G ++E + ++H +I + E
Sbjct: 27 VEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEE---IYHFHNRIFLRELESC 83
Query: 94 VTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFC 131
+ +L GR E +E+ + + Y NK + + + C
Sbjct: 84 IDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQC 121
>pdb|4A18|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 118
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 52 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYE 97
Q + DK+ AE LK K+ K+GN E I I+N++K + +
Sbjct: 23 QPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQ 68
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 132 ELAIKNCKNVKRINLLTTYADRPQHSNKT---ARVKQEENL 169
EL ++ KN R L++ + P HS KT A++ +E N
Sbjct: 49 ELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 89
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 132 ELAIKNCKNVKRINLLTTYADRPQHSNKT---ARVKQEENL 169
EL ++ KN R L++ + P HS KT A++ +E N
Sbjct: 50 ELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 90
>pdb|3PT1|A Chain A, Structure Of Duf89 From Saccharomyces Cerevisiae
Co-Crystallized With F6p
Length = 471
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 172 LQESLRKMKITL---NINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSL 228
L + L+K + + ++NY DR+ + W IG P + G T LSL
Sbjct: 370 LHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIG---------PLATNGITSLSL 420
Query: 229 RPCKETV 235
R CK V
Sbjct: 421 RTCKADV 427
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 136 KNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDRE 195
K VK+ L Y +P + K+A EE+L ++ E L++ + +N +T +E
Sbjct: 128 KKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKE 187
Query: 196 IVL 198
++
Sbjct: 188 YLI 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,948,074
Number of Sequences: 62578
Number of extensions: 282249
Number of successful extensions: 916
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 49
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)