BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1410
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WV92|MITD1_HUMAN MIT domain-containing protein 1 OS=Homo sapiens GN=MITD1 PE=1 SV=1
Length = 249
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + + +R+KI Y++RAE
Sbjct: 15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74
Query: 68 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 127
+K LD++K+ G YH+QI+I N G +YE LF +L+E V ++ + DPYI + HQ YNF
Sbjct: 75 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 134
Query: 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187
L+FCE+ IK VK I+LLT+ + +V+Q L++++ESLR + L + Y
Sbjct: 135 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 188
Query: 188 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 241
S+++HDREI +N W+IKIGRGLD F P+ FS+G+ D LRPC ET V+IFH+
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 243
>sp|Q5I0J5|MITD1_RAT MIT domain-containing protein 1 OS=Rattus norvegicus GN=Mitd1 PE=2
SV=1
Length = 249
Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + +R KI Y++RAE
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRSTLRTKISGYMDRAEN 74
Query: 68 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 127
+K LD++K+ G YH+QI+I N G +YE LF +L E V ++ + DPYI HQ YNF
Sbjct: 75 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLQETVTEVWIEDPYIRQTHQLYNF 134
Query: 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187
L+FCE+ IK V+ I+LLT+ +Q L+++++SLR + L INY
Sbjct: 135 LRFCEMLIKKPCKVRTIHLLTS------GDEGFGNTQQSSGLEEIKQSLRSHGVVLEINY 188
Query: 188 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 240
S+++HDREI +N W+IKIGRGLD F P+ FS+G+ DL LRPC ET V+IFH
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYCDLDLRPCHETTVDIFH 242
>sp|Q8VDV8|MITD1_MOUSE MIT domain-containing protein 1 OS=Mus musculus GN=Mitd1 PE=1 SV=1
Length = 249
Score = 197 bits (502), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67
A +L RAVELD R+ ++L YQ+G+ LL+ ++G + +R KI Y++RAE
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74
Query: 68 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 127
+K LD++K+ G YH+QI+I N G +YE LF +L E V ++ + DPYI HQ YNF
Sbjct: 75 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLHETVTEVWIEDPYIRQTHQLYNF 134
Query: 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187
L+FCE+ IK V+ I+LLT+ + +Q L+++++SL + L INY
Sbjct: 135 LRFCEMLIKKPCKVRTIHLLTSGYE------GLGNTQQSSGLEEIKQSLGSHGVVLEINY 188
Query: 188 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 240
S+++HDREI +N W+IKIGRGLD F P+ FS+G+ DL LRPC ET V+IFH
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYYDLDLRPCHETTVDIFH 242
>sp|Q91WE1|SNX15_MOUSE Sorting nexin-15 OS=Mus musculus GN=Snx15 PE=2 SV=1
Length = 337
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVL 68
L+ +A+ ++ G + +L YQDGV LL+ V G + ++ ++ K Y+ RAE+L
Sbjct: 275 LITQALRNEKAGAYAAALQGYQDGVHILLQGVSGDPSPARREGVKKKAAEYLKRAEML 332
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRAEVL 68
L +A + D+ G + E+L YQ V L HV +GD+ Q IR K Y++RAE L
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRAEKL 72
Query: 69 KGKL--DEKKKMGNYHEQIEIANNEKG 93
K L EKK E +EKG
Sbjct: 73 KEYLKNKEKKAQKPVKEGQPSPADEKG 99
>sp|Q4V7Q6|ULK3_XENLA Serine/threonine-protein kinase ULK3 OS=Xenopus laevis GN=ulk3 PE=2
SV=1
Length = 468
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 2 ASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETY 61
A ++E A L++ AVE D G + +LT Y + + + S+ ++ +R K+ Y
Sbjct: 277 AETLEKATRLVVEAVEKDSAGEHSAALTLYCKALEYFIPALHYESDAKRKEAMRSKVCQY 336
Query: 62 INRAEVLK 69
I+RAE LK
Sbjct: 337 ISRAEELK 344
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYI 62
S++E+A AV DE G ++L YQ + ELL + S ++ + +I+T +
Sbjct: 377 SALEVAS----AAVAKDEEGCACDALDLYQQSLGELLLMLSAESPGRRRELLHAEIQTLM 432
Query: 63 NRAEVLKGKL 72
RAE LK ++
Sbjct: 433 GRAEFLKEQM 442
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRAEVL 68
L +A + D+ G + E+L YQ V L HV +GD+ Q IR + Y++RAE L
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAQCTEYLDRAEKL 72
Query: 69 KGKL--DEKKKMGNYHEQIEIANNEKG 93
K L EKK E +EKG
Sbjct: 73 KEYLKNKEKKAQKPVKEGQPSPADEKG 99
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 1 MASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET 60
+ IEL Q +A++LD ++ E+ T Y +G+ L+ ++ N + IR K
Sbjct: 7 LTKGIELVQ----KAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 62
Query: 61 YINRAEVLKGKLD 73
Y+NRAE LK L+
Sbjct: 63 YLNRAEQLKKHLE 75
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR--GLSNKGDQQKIRDKIET 60
S+++ A L+ +A E D+ + E+L YQ V L ++ S+K ++ IR K
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKA-KESIRAKCVQ 62
Query: 61 YINRAEVLKGKLDEKKKMG 79
Y++RAE LK L K+K G
Sbjct: 63 YLDRAEKLKDYLRSKEKHG 81
>sp|Q4V896|SNX15_RAT Sorting nexin-15 OS=Rattus norvegicus GN=Snx15 PE=2 SV=1
Length = 338
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 70
L+ +A+ ++ G + +L YQ+GV LL+ V G + ++ ++ K Y+ RAE L
Sbjct: 276 LITQALRNEKAGAYAAALQGYQEGVHILLQGVSGDPSPTRREGVKKKAAEYLKRAETLHA 335
Query: 71 KL 72
L
Sbjct: 336 HL 337
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus
norvegicus GN=Vps4a PE=2 SV=1
Length = 437
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR--GLSNKGDQQKIRDKIET 60
S+++ A L+ +A E D+ + E+L YQ V L ++ S+K ++ IR K
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKA-KESIRAKCMQ 62
Query: 61 YINRAEVLKGKLDEKKKMG 79
Y++RAE LK L K+K G
Sbjct: 63 YLDRAEKLKDYLRNKEKHG 81
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR--GLSNKGDQQKIRDKIET 60
S+++ A L+ +A E D+ + E+L YQ V L ++ S+K ++ IR K
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKA-KESIRAKCMQ 62
Query: 61 YINRAEVLKGKLDEKKKMG 79
Y++RAE LK L K+K G
Sbjct: 63 YLDRAEKLKDYLRNKEKHG 81
>sp|Q5ZJH6|ULK3_CHICK Serine/threonine-protein kinase ULK3 OS=Gallus gallus GN=ULK3 PE=2
SV=1
Length = 468
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 70
L++ AV+ D+ G + +L+ Y + + + S+ ++ IR K+ YI+RAE LK
Sbjct: 287 LVVEAVKKDQEGDASAALSLYCKALEYFVPALHYESDARRKEAIRTKVGQYISRAEELKA 346
Query: 71 KLDEKKK 77
+ K K
Sbjct: 347 LVASKSK 353
>sp|Q9R1S8|CAN7_MOUSE Calpain-7 OS=Mus musculus GN=Capn7 PE=2 SV=1
Length = 813
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINR 64
+E A FL+ +A + DE+G +++ Y + V LK ++K Q K++ ++R
Sbjct: 87 LERAHFLVTQAFDEDEKGNVEDAIELYTEAVELCLKTSSETADKTLQNKLKQLARQALDR 146
Query: 65 AEVLKGKL 72
AE L L
Sbjct: 147 AEALSEPL 154
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2 ASSIELAQFLLIR-AVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET 60
AS++E R AV+ D GR++E++ +Y++ L+ S+ ++I++KI
Sbjct: 3 ASALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAEMAGSS---LERIQEKINE 59
Query: 61 YINRAEVLKGKLDEK 75
Y+ R + L + K
Sbjct: 60 YLERVQALHSAVQSK 74
>sp|Q148E7|SNX15_BOVIN Sorting nexin-15 OS=Bos taurus GN=SNX15 PE=2 SV=1
Length = 345
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 66
L+ +A+ ++ G + +L Y+DGV LL+ V G + ++ ++ K Y+ RAE
Sbjct: 282 LITQALRDEKAGAYPAALQGYRDGVHILLQGVPGDPSPARREGVKKKAAEYLKRAE 337
>sp|Q54KQ7|SPAST_DICDI Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1
Length = 655
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 15 AVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 72
A +LDE ++ + Y DG+ +L+ L + + ++ RD I+ Y+ RAE LK +L
Sbjct: 179 AKQLDESLKYNSCIKLYIDGIEKLM----ALFSSYNSKEYRDYIDFYLKRAEYLKNEL 232
>sp|Q5FB23|URE1_CAMLA Urease subunit beta OS=Campylobacter lari GN=ureB PE=3 SV=1
Length = 565
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 67 VLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYN 126
+LKG L K+G+ + I + + YEK+FG L+EN N + +
Sbjct: 448 ILKGGLIVGAKIGDANASIP---TPEPIIYEKMFGANLNENALHFVSKASLDANIPEKLS 504
Query: 127 FLQFCELAIKNCKNVKRINL 146
+ C +A+KNC+N+ + +L
Sbjct: 505 LKRKC-VAVKNCRNITKKDL 523
>sp|Q3YQP0|SYT_EHRCJ Threonine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=thrS
PE=3 SV=1
Length = 633
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187
L+FC L ++ K+ N+L ++DRP++ R +E + + +L+K N+NY
Sbjct: 397 LKFCNLLMEVYKDFGFTNILVKFSDRPEN-----RAGSDETWDRAESALKKSVEAANLNY 451
>sp|Q8BLK9|KS6C1_MOUSE Ribosomal protein S6 kinase delta-1 OS=Mus musculus GN=Rps6kc1 PE=1
SV=2
Length = 1056
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINR 64
+E A L+ A++ +E + + FY+ GV LL+ V+G S+ ++ ++ + Y+ R
Sbjct: 239 LEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGVQGESSPTRREAVKRRTAEYLMR 298
Query: 65 AE 66
AE
Sbjct: 299 AE 300
>sp|Q7SAF6|CEF1_NEUCR Pre-mRNA-splicing factor cef-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cef-1 PE=3 SV=1
Length = 779
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 26 ESLTFYQDGVTELLKHVRGLSNKGD--QQKIRDKIETYINRAEVLKGKLDEKKKMGNYHE 83
E ++ Q + E++ + + KG+ ++K+ + Y NRAE+L+ K+ E HE
Sbjct: 657 EQISTMQIALEEVIDQIVASAEKGNKLEKKLNLHLGGYKNRAEMLRKKISEA------HE 710
Query: 84 QIEIANNEKG 93
+E ANN G
Sbjct: 711 ALEKANNALG 720
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 70
L+ A++ D ++ ++ +YQ + + ++ N+ ++ IR K+ Y++RAE LK
Sbjct: 13 LVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKV 72
Query: 71 KLDEK 75
L EK
Sbjct: 73 YLQEK 77
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRA 65
L +A + D+ G + E+L YQ V L HV +GD+ Q IR K Y++RA
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRA 69
>sp|Q9NRS6|SNX15_HUMAN Sorting nexin-15 OS=Homo sapiens GN=SNX15 PE=1 SV=1
Length = 342
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 11 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 66
L+ +A+ ++ G + +L Y+DGV LL+ V Q+ ++ K Y+ RAE
Sbjct: 275 LITQALRDEKAGAYAAALQGYRDGVHVLLQGVPSDPLPARQEGVKKKAAEYLKRAE 330
>sp|P0C5E7|AGE1_CAEBR Phosphatidylinositol 3-kinase age-1 OS=Caenorhabditis briggsae
GN=age-1 PE=3 SV=1
Length = 1159
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 33 DGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 79
D +T + V+GLS + ++K+RD++ T ++ E + LD K G
Sbjct: 809 DELTRISSLVKGLSKEAAREKLRDQLRTISHKMESIDSPLDPVYKFG 855
>sp|Q96S38|KS6C1_HUMAN Ribosomal protein S6 kinase delta-1 OS=Homo sapiens GN=RPS6KC1 PE=1
SV=2
Length = 1066
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINR 64
+E A L+ A++ +E + + FY+ GV LL+ V+G S+ ++ ++ + Y+ R
Sbjct: 240 LEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGVQGESSPTRREAVKRRTAEYLMR 299
Query: 65 AE 66
AE
Sbjct: 300 AE 301
>sp|Q2NVL2|SYA_SODGM Alanine--tRNA ligase OS=Sodalis glossinidius (strain morsitans)
GN=alaS PE=3 SV=1
Length = 875
Score = 31.2 bits (69), Expect = 7.4, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 36 TELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVT 95
++L++H+ L KGD Q + DK+ R+ L+ L + K E + N + +
Sbjct: 711 SDLVQHIAQLV-KGDSQTLVDKVRALQERSRQLEKDLQQLKNQQAAQESASLGRNVRDIN 769
Query: 96 YEKLFGRFLD 105
K+ R LD
Sbjct: 770 GVKVLVRQLD 779
>sp|P11137|MAP2_HUMAN Microtubule-associated protein 2 OS=Homo sapiens GN=MAP2 PE=1 SV=4
Length = 1827
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQ-KIRDKIETYINR 64
+LA L + V+L GR + + ++ + GLS + DQ+ K D+++T + +
Sbjct: 907 DLATDLSLIEVKLAAAGRVKDEFSVDKEASAHISGDKSGLSKEFDQEKKANDRLDTVLEK 966
Query: 65 AEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFL 104
+E + KK ++IE GVTYE+ + L
Sbjct: 967 SEEHADSKEHAKKTEEAGDEIETFG--LGVTYEQALAKDL 1004
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,593,845
Number of Sequences: 539616
Number of extensions: 3565593
Number of successful extensions: 11875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 11788
Number of HSP's gapped (non-prelim): 143
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)