Query psy1410
Match_columns 246
No_of_seqs 203 out of 346
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:32:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4509|consensus 100.0 6.4E-83 1.4E-87 549.0 16.4 233 5-243 12-247 (247)
2 cd02685 MIT_C MIT_C; domain fo 100.0 5.4E-72 1.2E-76 467.4 16.8 147 90-243 1-148 (148)
3 cd02683 MIT_1 MIT: domain cont 99.9 9.5E-22 2.1E-26 148.5 10.2 75 5-79 3-77 (77)
4 cd02684 MIT_2 MIT: domain cont 99.8 3.6E-20 7.8E-25 139.2 9.9 71 4-74 2-72 (75)
5 cd02681 MIT_calpain7_1 MIT: do 99.8 6.2E-20 1.3E-24 138.6 10.0 71 5-75 3-74 (76)
6 cd02682 MIT_AAA_Arch MIT: doma 99.8 2.6E-19 5.5E-24 135.0 9.8 68 5-72 3-70 (75)
7 cd02677 MIT_SNX15 MIT: domain 99.8 2.6E-19 5.7E-24 134.7 9.5 69 3-71 1-69 (75)
8 cd02678 MIT_VPS4 MIT: domain c 99.8 8.7E-19 1.9E-23 130.9 10.2 73 3-75 1-73 (75)
9 PF04212 MIT: MIT (microtubule 99.8 2.5E-18 5.5E-23 125.8 10.3 69 4-72 1-69 (69)
10 cd02656 MIT MIT: domain contai 99.7 1.4E-17 3.1E-22 123.6 10.2 72 4-75 2-73 (75)
11 KOG0739|consensus 99.7 2.7E-17 5.8E-22 152.8 11.5 119 1-122 3-134 (439)
12 smart00745 MIT Microtubule Int 99.7 1.2E-16 2.5E-21 118.8 10.4 72 3-74 3-74 (77)
13 cd02680 MIT_calpain7_2 MIT: do 99.6 7.2E-16 1.6E-20 116.3 8.7 66 5-74 3-72 (75)
14 cd02679 MIT_spastin MIT: domai 97.2 0.0031 6.7E-08 48.2 8.9 42 4-45 4-45 (79)
15 PF08969 USP8_dimer: USP8 dime 96.4 0.018 3.9E-07 45.9 7.8 71 4-75 34-111 (115)
16 PF00515 TPR_1: Tetratricopept 93.5 0.22 4.7E-06 30.4 4.7 30 8-37 1-30 (34)
17 PF12063 DUF3543: Domain of un 90.0 0.98 2.1E-05 40.9 6.7 49 24-72 69-135 (238)
18 PF13176 TPR_7: Tetratricopept 89.5 0.9 1.9E-05 28.6 4.4 26 11-36 2-27 (36)
19 PF13181 TPR_8: Tetratricopept 88.1 1.5 3.3E-05 26.4 4.6 28 10-37 3-30 (34)
20 PF07719 TPR_2: Tetratricopept 87.0 2 4.4E-05 25.6 4.7 28 10-37 3-30 (34)
21 PF13414 TPR_11: TPR repeat; P 86.2 0.94 2E-05 31.4 3.2 31 7-37 2-32 (69)
22 PF13374 TPR_10: Tetratricopep 85.9 2.6 5.5E-05 26.0 4.9 35 8-42 2-36 (42)
23 KOG2709|consensus 85.7 3.9 8.4E-05 40.7 8.1 69 6-74 20-101 (560)
24 PF03704 BTAD: Bacterial trans 79.2 8.9 0.00019 30.5 6.8 35 21-55 109-143 (146)
25 PF12063 DUF3543: Domain of un 77.8 21 0.00045 32.4 9.4 65 5-69 162-234 (238)
26 KOG2880|consensus 77.7 12 0.00026 36.5 8.1 69 4-72 31-104 (424)
27 PF13424 TPR_12: Tetratricopep 76.5 7.1 0.00015 27.6 5.0 32 7-38 45-76 (78)
28 cd09247 BRO1_Alix_like_2 Prote 76.3 14 0.00031 34.9 8.3 38 7-44 252-289 (346)
29 PRK10775 cell division protein 76.3 13 0.00028 34.3 7.8 46 163-209 168-214 (276)
30 cd09240 BRO1_Alix Protein-inte 75.9 14 0.0003 34.9 8.1 61 7-67 254-314 (346)
31 PF13091 PLDc_2: PLD-like doma 75.1 3.3 7.3E-05 31.8 3.1 84 104-204 5-88 (126)
32 PF13414 TPR_11: TPR repeat; P 74.2 6.2 0.00013 27.2 4.1 32 5-36 19-66 (69)
33 KOG4648|consensus 73.5 3 6.5E-05 40.8 2.9 33 5-37 94-126 (536)
34 smart00028 TPR Tetratricopepti 73.4 5.8 0.00013 21.2 3.1 26 11-36 4-29 (34)
35 PF05168 HEPN: HEPN domain; I 73.2 11 0.00023 28.4 5.5 41 2-42 2-42 (118)
36 PF08910 Aida_N: Aida N-termin 72.3 46 0.001 27.0 9.0 62 10-71 7-72 (106)
37 PF04652 DUF605: Vta1 like; I 72.0 10 0.00022 35.7 6.2 109 9-134 4-117 (380)
38 KOG0603|consensus 70.9 3.5 7.6E-05 42.3 2.9 70 1-70 93-166 (612)
39 PF14938 SNAP: Soluble NSF att 70.7 24 0.00053 31.8 8.1 56 6-65 112-168 (282)
40 PF13371 TPR_9: Tetratricopept 70.4 9.7 0.00021 26.4 4.4 53 5-57 11-71 (73)
41 KOG2997|consensus 69.6 5.5 0.00012 38.3 3.7 32 5-36 16-47 (366)
42 PF13424 TPR_12: Tetratricopep 67.9 15 0.00033 25.9 5.0 34 8-42 5-38 (78)
43 PRK12452 cardiolipin synthetas 66.5 68 0.0015 32.1 10.9 103 95-212 341-447 (509)
44 cd09241 BRO1_ScRim20-like Prot 66.0 31 0.00067 32.7 8.0 66 7-72 236-306 (355)
45 PF01474 DAHP_synth_2: Class-I 65.9 31 0.00067 34.3 8.1 70 123-205 294-364 (439)
46 PF02609 Exonuc_VII_S: Exonucl 64.8 42 0.00091 23.2 6.6 33 7-39 3-37 (53)
47 cd09242 BRO1_ScBro1_like Prote 64.2 25 0.00054 33.2 7.1 37 7-43 243-279 (348)
48 cd09239 BRO1_HD-PTP_like Prote 63.4 30 0.00066 33.0 7.5 38 7-44 251-288 (361)
49 PRK10370 formate-dependent nit 63.2 28 0.0006 30.0 6.6 53 6-69 127-194 (198)
50 PRK01642 cls cardiolipin synth 62.9 79 0.0017 31.2 10.5 99 98-211 321-420 (483)
51 cd09246 BRO1_Alix_like_1 Prote 62.5 34 0.00075 32.4 7.7 66 7-72 246-317 (353)
52 KOG2003|consensus 62.0 44 0.00096 34.1 8.5 68 3-74 640-731 (840)
53 PF12688 TPR_5: Tetratrico pep 60.4 14 0.00029 30.0 3.9 26 11-36 4-29 (120)
54 KOG0553|consensus 59.4 13 0.00029 35.1 4.2 31 7-37 80-110 (304)
55 PRK11263 cardiolipin synthase 59.1 1.1E+02 0.0025 29.7 10.7 101 97-212 208-309 (411)
56 PRK14066 exodeoxyribonuclease 59.0 56 0.0012 24.6 6.8 34 5-38 6-41 (75)
57 PF13428 TPR_14: Tetratricopep 59.0 22 0.00048 22.9 4.1 25 12-36 5-29 (44)
58 COG1502 Cls Phosphatidylserine 58.9 1.2E+02 0.0027 28.5 10.8 94 98-204 273-368 (438)
59 KOG1840|consensus 57.8 54 0.0012 33.1 8.4 67 6-73 281-349 (508)
60 KOG3906|consensus 57.7 51 0.0011 31.3 7.6 102 22-139 219-320 (399)
61 KOG1840|consensus 57.3 49 0.0011 33.4 8.0 54 18-72 251-316 (508)
62 PRK14064 exodeoxyribonuclease 55.5 69 0.0015 24.1 6.8 47 5-68 8-56 (75)
63 PRK00977 exodeoxyribonuclease 55.2 68 0.0015 24.3 6.8 34 5-38 12-47 (80)
64 PF13174 TPR_6: Tetratricopept 55.1 20 0.00043 20.8 3.1 26 11-36 3-28 (33)
65 cd09243 BRO1_Brox_like Protein 55.0 74 0.0016 30.5 8.5 67 6-72 246-327 (353)
66 COG0124 HisS Histidyl-tRNA syn 54.0 12 0.00027 36.8 3.2 35 164-215 239-273 (429)
67 KOG0543|consensus 53.6 43 0.00093 32.9 6.7 68 6-73 274-354 (397)
68 TIGR01358 DAHP_synth_II 3-deox 53.6 41 0.00089 33.5 6.7 70 123-205 291-361 (443)
69 KOG4514|consensus 53.4 27 0.00059 31.1 4.9 44 25-77 160-203 (222)
70 PF03097 BRO1: BRO1-like domai 52.9 1.4E+02 0.0029 28.0 9.9 68 6-73 237-311 (377)
71 TIGR01280 xseB exodeoxyribonuc 51.6 92 0.002 22.8 6.8 34 5-38 3-38 (67)
72 cd09034 BRO1_Alix_like Protein 51.0 74 0.0016 29.4 7.7 67 6-72 249-320 (345)
73 PF13432 TPR_16: Tetratricopep 50.3 34 0.00074 23.1 4.2 19 18-36 41-59 (65)
74 KOG0547|consensus 49.8 22 0.00048 36.2 4.2 22 16-37 123-144 (606)
75 PLN02291 phospho-2-dehydro-3-d 49.6 48 0.001 33.2 6.5 71 122-205 310-381 (474)
76 PLN03088 SGT1, suppressor of 49.6 23 0.0005 33.4 4.2 29 8-36 2-30 (356)
77 KOG0545|consensus 49.5 56 0.0012 30.8 6.5 39 7-45 176-215 (329)
78 PRK14063 exodeoxyribonuclease 48.8 1E+02 0.0022 23.2 6.8 34 5-38 7-42 (76)
79 PF14559 TPR_19: Tetratricopep 48.4 15 0.00032 25.0 2.1 17 20-36 3-19 (68)
80 PRK10866 outer membrane biogen 48.2 2E+02 0.0044 25.6 10.7 136 8-180 32-178 (243)
81 PRK14069 exodeoxyribonuclease 48.2 1.4E+02 0.003 23.7 8.5 33 5-37 10-44 (95)
82 TIGR02552 LcrH_SycD type III s 48.1 39 0.00086 25.9 4.7 13 6-18 34-46 (135)
83 PF12968 DUF3856: Domain of Un 46.0 37 0.00081 28.6 4.3 35 10-45 102-136 (144)
84 KOG0547|consensus 45.5 22 0.00048 36.2 3.5 33 5-37 519-566 (606)
85 PRK14068 exodeoxyribonuclease 45.0 1.3E+02 0.0029 22.7 7.9 34 5-38 8-43 (76)
86 smart00748 HEPN Higher Eukaryt 44.6 47 0.001 25.6 4.6 37 6-42 2-38 (113)
87 cd00215 PTS_IIA_lac PTS_IIA, P 44.3 69 0.0015 25.2 5.5 35 7-41 14-48 (97)
88 PRK10454 PTS system N,N'-diace 43.9 65 0.0014 26.3 5.4 35 7-41 30-64 (115)
89 PRK09591 celC cellobiose phosp 43.1 72 0.0016 25.4 5.5 35 7-41 19-53 (104)
90 PF03799 FtsQ: Cell division p 43.0 76 0.0017 23.8 5.5 44 165-209 43-87 (117)
91 PF02255 PTS_IIA: PTS system, 42.9 74 0.0016 24.9 5.4 36 6-41 12-47 (96)
92 PRK02603 photosystem I assembl 42.7 51 0.0011 27.1 4.8 32 6-37 33-64 (172)
93 cd09245 BRO1_UmRIM23-like Prot 42.4 1.3E+02 0.0028 29.5 8.2 35 6-40 294-328 (413)
94 PRK02603 photosystem I assembl 42.0 1.9E+02 0.0041 23.7 8.1 29 9-37 73-101 (172)
95 COG3200 AroG 3-deoxy-D-arabino 40.4 80 0.0017 31.0 6.2 69 124-205 296-365 (445)
96 PF00070 Pyr_redox: Pyridine n 40.4 64 0.0014 23.2 4.5 50 128-187 12-61 (80)
97 PRK14067 exodeoxyribonuclease 40.1 1.7E+02 0.0036 22.4 8.4 35 4-38 8-44 (80)
98 CHL00033 ycf3 photosystem I as 40.0 85 0.0018 25.5 5.7 29 19-47 124-152 (168)
99 PF13432 TPR_16: Tetratricopep 39.2 40 0.00086 22.8 3.1 24 13-36 2-25 (65)
100 PRK13430 F0F1 ATP synthase sub 39.1 3.1E+02 0.0067 25.1 14.9 78 111-207 173-250 (271)
101 TIGR00823 EIIA-LAC phosphotran 39.0 92 0.002 24.6 5.4 35 7-41 16-50 (99)
102 cd00138 PLDc Phospholipase D. 37.7 2.2E+02 0.0047 23.0 8.7 104 90-201 16-124 (176)
103 KOG4555|consensus 37.6 97 0.0021 26.8 5.7 34 5-38 40-73 (175)
104 PLN03098 LPA1 LOW PSII ACCUMUL 37.4 50 0.0011 33.0 4.5 21 163-183 311-331 (453)
105 PF09753 Use1: Membrane fusion 37.3 1E+02 0.0022 27.7 6.2 53 25-81 26-78 (251)
106 KOG1936|consensus 37.2 35 0.00075 34.3 3.3 62 123-215 276-337 (518)
107 COG2250 Uncharacterized conser 36.0 99 0.0022 25.3 5.4 40 4-43 9-48 (132)
108 PLN03088 SGT1, suppressor of 35.5 94 0.002 29.2 5.9 15 21-35 49-63 (356)
109 PF14853 Fis1_TPR_C: Fis1 C-te 35.0 1.1E+02 0.0024 21.4 4.8 39 15-60 8-46 (53)
110 PRK14070 exodeoxyribonuclease 34.9 84 0.0018 23.4 4.4 15 23-37 17-31 (69)
111 CHL00033 ycf3 photosystem I as 34.1 91 0.002 25.3 5.0 32 6-37 33-64 (168)
112 KOG4234|consensus 33.4 1.5E+02 0.0033 27.3 6.6 34 5-38 92-125 (271)
113 PF06957 COPI_C: Coatomer (COP 33.3 1.3E+02 0.0027 29.9 6.5 57 7-63 203-260 (422)
114 PF06552 TOM20_plant: Plant sp 32.8 3.5E+02 0.0077 24.0 8.6 44 4-47 50-112 (186)
115 PRK15359 type III secretion sy 32.5 49 0.0011 26.8 3.1 18 19-36 69-86 (144)
116 PRK12295 hisZ ATP phosphoribos 32.5 49 0.0011 31.7 3.5 39 162-215 282-321 (373)
117 KOG1154|consensus 32.0 1.2E+02 0.0026 28.4 5.7 39 96-135 104-142 (285)
118 TIGR00990 3a0801s09 mitochondr 31.6 76 0.0016 31.7 4.8 31 6-36 125-155 (615)
119 PF15580 Imm33: Immunity prote 31.6 39 0.00084 26.5 2.2 36 198-233 27-65 (90)
120 KOG0543|consensus 31.2 1.8E+02 0.004 28.7 7.2 58 7-65 207-264 (397)
121 PRK15179 Vi polysaccharide bio 31.2 49 0.0011 34.5 3.5 29 7-35 153-181 (694)
122 PRK15359 type III secretion sy 30.9 2.1E+02 0.0046 23.0 6.6 32 5-36 74-120 (144)
123 PRK11449 putative deoxyribonuc 30.6 49 0.0011 29.9 3.1 74 120-210 109-182 (258)
124 PF10157 DUF2365: Uncharacteri 30.4 1.5E+02 0.0032 25.2 5.7 42 25-75 87-128 (149)
125 PF01261 AP_endonuc_2: Xylose 30.3 2.6E+02 0.0057 22.6 7.2 61 123-189 72-134 (213)
126 PF06552 TOM20_plant: Plant sp 30.2 2.4E+02 0.0051 25.1 7.1 45 25-69 45-110 (186)
127 PF12862 Apc5: Anaphase-promot 29.9 1.2E+02 0.0025 22.9 4.6 32 8-39 41-72 (94)
128 PF14938 SNAP: Soluble NSF att 29.2 1.2E+02 0.0025 27.4 5.2 34 7-40 73-106 (282)
129 PHA02820 phospholipase-D-like 28.9 3.2E+02 0.0069 26.7 8.5 102 97-208 220-339 (424)
130 PRK12292 hisZ ATP phosphoribos 28.8 61 0.0013 30.9 3.5 38 163-215 236-273 (391)
131 KOG4642|consensus 28.6 57 0.0012 30.5 3.1 48 7-63 9-56 (284)
132 PF13371 TPR_9: Tetratricopept 28.1 1E+02 0.0022 21.0 3.8 25 12-36 33-57 (73)
133 PLN03098 LPA1 LOW PSII ACCUMUL 27.9 90 0.0019 31.3 4.5 23 15-37 119-141 (453)
134 PRK13434 F0F1 ATP synthase sub 27.8 3.2E+02 0.007 23.2 7.5 53 139-207 102-154 (184)
135 PF02120 Flg_hook: Flagellar h 27.8 86 0.0019 22.7 3.5 38 143-188 39-77 (85)
136 TIGR02795 tol_pal_ybgF tol-pal 27.6 1.2E+02 0.0026 22.1 4.2 27 10-36 4-30 (119)
137 KOG2847|consensus 27.3 30 0.00066 32.3 1.1 86 120-216 48-139 (286)
138 PF09537 DUF2383: Domain of un 27.0 2.9E+02 0.0062 21.1 7.1 44 32-75 14-57 (111)
139 KOG4626|consensus 26.9 65 0.0014 34.1 3.4 32 13-44 393-427 (966)
140 PRK12370 invasion protein regu 26.7 89 0.0019 31.0 4.4 32 5-36 320-366 (553)
141 PRK10370 formate-dependent nit 26.3 1.3E+02 0.0027 25.9 4.7 31 6-36 56-101 (198)
142 PF10516 SHNi-TPR: SHNi-TPR; 26.0 1.1E+02 0.0023 20.1 3.3 23 20-42 13-35 (38)
143 KOG1156|consensus 25.7 2.3E+02 0.0051 29.8 7.1 62 5-73 57-137 (700)
144 PF14733 ACDC: AP2-coincident 25.2 2.5E+02 0.0055 21.2 5.8 62 26-106 3-72 (91)
145 PF12895 Apc3: Anaphase-promot 25.1 1.3E+02 0.0029 21.5 4.0 18 14-31 31-48 (84)
146 PF00210 Ferritin: Ferritin-li 25.0 3.1E+02 0.0068 20.8 7.1 50 25-74 86-138 (142)
147 PRK12420 histidyl-tRNA synthet 24.9 79 0.0017 30.4 3.5 39 162-215 239-277 (423)
148 cd09244 BRO1_Rhophilin Protein 24.8 2.7E+02 0.0059 26.7 7.1 68 7-74 243-313 (350)
149 PRK13436 F0F1 ATP synthase sub 24.4 4.2E+02 0.0091 22.5 7.6 53 139-207 106-158 (179)
150 cd00189 TPR Tetratricopeptide 24.4 1.3E+02 0.0028 19.4 3.6 24 13-36 5-28 (100)
151 COG1447 CelC Phosphotransferas 24.1 2E+02 0.0044 23.2 5.1 35 7-41 18-52 (105)
152 PF06415 iPGM_N: BPG-independe 23.6 1.9E+02 0.0042 26.2 5.5 51 123-181 44-95 (223)
153 TIGR03265 PhnT2 putative 2-ami 23.6 4.5E+02 0.0098 24.8 8.3 58 162-219 167-230 (353)
154 PF11389 Porin_OmpL1: Leptospi 22.9 99 0.0021 28.6 3.5 38 181-224 122-168 (267)
155 PLN02530 histidine-tRNA ligase 22.9 84 0.0018 31.1 3.3 27 164-190 304-330 (487)
156 cd00089 HR1 Protein kinase C-r 22.8 3E+02 0.0065 19.8 5.8 45 30-74 23-67 (72)
157 PF03514 GRAS: GRAS domain fam 22.8 3.2E+02 0.0069 26.1 7.2 73 104-187 106-180 (374)
158 TIGR02795 tol_pal_ybgF tol-pal 22.3 1.8E+02 0.0038 21.1 4.3 23 14-36 45-67 (119)
159 KOG0553|consensus 22.3 3.4E+02 0.0074 25.9 7.0 62 10-71 76-141 (304)
160 TIGR00511 ribulose_e2b2 ribose 21.6 6.6E+02 0.014 23.3 12.0 39 34-72 67-105 (301)
161 PF13643 DUF4145: Domain of un 21.5 2.9E+02 0.0063 19.9 5.3 61 14-79 2-64 (87)
162 PLN02972 Histidyl-tRNA synthet 21.3 1.1E+02 0.0023 32.7 3.9 38 163-215 567-604 (763)
163 cd00907 Bacterioferritin Bacte 21.2 4.3E+02 0.0092 21.0 7.5 57 24-80 86-145 (153)
164 PRK11189 lipoprotein NlpI; Pro 21.2 1.6E+02 0.0035 26.6 4.6 29 8-36 64-92 (296)
165 cd00179 SynN Syntaxin N-termin 20.9 4.4E+02 0.0094 21.0 9.3 48 28-75 18-67 (151)
166 PF14059 DUF4251: Domain of un 20.8 1.7E+02 0.0037 24.0 4.3 54 162-215 3-58 (138)
167 PF07875 Coat_F: Coat F domain 20.5 3.1E+02 0.0068 19.2 6.8 49 26-74 8-56 (64)
168 KOG4234|consensus 20.5 5E+02 0.011 24.0 7.4 21 13-33 173-193 (271)
169 PF08004 DUF1699: Protein of u 20.4 1.8E+02 0.0039 24.4 4.3 40 134-188 36-75 (131)
170 PF06069 PerC: PerC transcript 20.3 1.6E+02 0.0034 23.1 3.7 82 13-104 5-88 (90)
171 KOG1585|consensus 20.2 1.8E+02 0.0039 27.5 4.7 32 8-39 110-141 (308)
172 KOG2460|consensus 20.2 2.1E+02 0.0045 29.6 5.4 33 13-45 427-459 (593)
173 PRK09452 potA putrescine/sperm 20.1 6E+02 0.013 24.3 8.4 58 162-219 177-240 (375)
No 1
>KOG4509|consensus
Probab=100.00 E-value=6.4e-83 Score=548.99 Aligned_cols=233 Identities=38% Similarity=0.717 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcch
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS-NKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHE 83 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~-d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~~~ 83 (246)
+.+|..++++||+.|+.|+|..|+.||++||+++.+++++.+ |...|..++.+++.||+||+.|+++|+++++.|++|+
T Consensus 12 ~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~e 91 (247)
T KOG4509|consen 12 LKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTHE 91 (247)
T ss_pred hhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhh
Confidence 458999999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhhhcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEee-cCCCCCCCccccch
Q psy1410 84 QIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLT-TYADRPQHSNKTAR 162 (246)
Q Consensus 84 ~~~i~en~~G~sYe~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T-~~d~~~~~~~~~~~ 162 (246)
|++|++|+||+||++|||.|+++++++|||+|||||..||+.||+|||||+|+.+|.++.|||+| +.|++.. .
T Consensus 92 Q~KI~~NaTG~SY~~iF~e~~dd~l~~V~ieD~YIr~~HQL~NFlRFCElli~~pckvktihLLtisL~eG~E------~ 165 (247)
T KOG4509|consen 92 QIKIAANATGFSYARIFGECCDDRLREVHIEDAYIRAHHQLVNFLRFCELLIKLPCKVKTIHLLTISLDEGEE------A 165 (247)
T ss_pred hhhhhhccCcccHHHHHHHHHhhhhheeeecchHHHHHHHHHHHHHHHHHHcccccccceEEEEEEechhhHH------H
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8888763 5
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEec
Q psy1410 163 VKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHR 241 (246)
Q Consensus 163 ~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~~-~~f~lg~~~~~~R~c~et~v~i~~~ 241 (246)
.+|...|++|.+||+++||-|+++||+|||||+|+|||||+||||||||||++| ++||+|+||+|+||||||+|||||.
T Consensus 166 ~knq~~~eEieeSL~~~GVl~eVefSssIHDREI~FdNGWmiK~GRGLDYFK~p~~kfsLG~~DfD~RPCHET~idIfhk 245 (247)
T KOG4509|consen 166 RKNQAEFEEIEESLAKHGVLFEVEFSSSIHDREIIFDNGWMIKIGRGLDYFKAPDGKFSLGACDFDLRPCHETIIDIFHK 245 (247)
T ss_pred HHhhhhHHHHHHHHHhcceEEEEEecccccceeEEecCceEEEecCccccccCCCCceeecccccccCchhHHHHHHhhc
Confidence 567888999999999999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred cc
Q psy1410 242 AS 243 (246)
Q Consensus 242 ~~ 243 (246)
++
T Consensus 246 Kh 247 (247)
T KOG4509|consen 246 KH 247 (247)
T ss_pred CC
Confidence 75
No 2
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=100.00 E-value=5.4e-72 Score=467.39 Aligned_cols=147 Identities=45% Similarity=0.786 Sum_probs=144.0
Q ss_pred CCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHH
Q psy1410 90 NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENL 169 (246)
Q Consensus 90 n~~G~sYe~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l 169 (246)
|+||+||++||||||++.|++|+|||||||++||++||||||||+|++|+++++|||+|++|+.+ +++|.++|
T Consensus 1 n~~G~sYd~LFg~Yl~d~~~~I~ieDPYir~~hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~-------~~~Q~~~l 73 (148)
T cd02685 1 NATGFSYDRLFGPYLDDGVTEITVEDPYIRNFHQIRNFLRFCELVVKPPCELKYIHLVTGEDEDN-------GKQQIEAL 73 (148)
T ss_pred CCCcccHHHHHHHHHhCCceEEEEeCccccchHHHHHHHHHHHHHhcCccceEEEEEEecCCCCC-------HHHHHHHH
Confidence 79999999999999997799999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEeccc
Q psy1410 170 KQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHRAS 243 (246)
Q Consensus 170 ~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~~-~~f~lg~~~~~~R~c~et~v~i~~~~~ 243 (246)
++|++||+++||+|+|+||+|||||+|+|||||+|||||||||||+| ++||||+|||+||+|+||+|||||+++
T Consensus 74 ~~i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~IkigRGLD~fq~~~~~fsig~~d~~~R~C~~t~Vdi~~~~~ 148 (148)
T cd02685 74 EEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWIIKIGRGLDYFKPPEGKFSLGNRDQDFRPCKATEVDIFHTKH 148 (148)
T ss_pred HHHHHHHHhCCcEEEEEECCCccceEEEecCCeEEEECCcccceeCCCCccchhhcchhccceeeeEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999 899999999999999999999999875
No 3
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.87 E-value=9.5e-22 Score=148.50 Aligned_cols=75 Identities=39% Similarity=0.691 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG 79 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g 79 (246)
..+|++++++||++|++|+|+||+.||++||++|+++++++||+.+|+.++.|+.+||+|||+||++|++.++.|
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~~~~~ 77 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQEKEDG 77 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence 579999999999999999999999999999999999999999999999999999999999999999998877654
No 4
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.83 E-value=3.6e-20 Score=139.18 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
.+++|++++++||+.|++|+|++|+.||++||++|+.++++|+||.+|+.++.|+.+||+|||+||.+|++
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~ 72 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIAS 72 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999975
No 5
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.82 E-value=6.2e-20 Score=138.60 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e-~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
..+|++++++||++|++|+|+||+.||++||++|+.+++++ +||..++.++.|+++||+|||+||+++.++
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~~~ 74 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQGQ 74 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56999999999999999999999999999999999998887 999999999999999999999999998643
No 6
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.80 E-value=2.6e-19 Score=135.01 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
.+.|.+++++||++|+.|+|+||+.||++||++|+++++.+||+.+|..+++|+++|++|||.||+.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999999999999999999999987
No 7
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.80 E-value=2.6e-19 Score=134.69 Aligned_cols=69 Identities=33% Similarity=0.507 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Q psy1410 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGK 71 (246)
Q Consensus 3 ~~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~ 71 (246)
+++++|++++++||+.|++|+|++|+.+|++||++|+.++++++|+.+|+.++.|+.+||+|||+|+..
T Consensus 1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999864
No 8
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.79 E-value=8.7e-19 Score=130.93 Aligned_cols=73 Identities=30% Similarity=0.453 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 3 ~~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
+++++|+.++++||+.|++|+|++|+.+|.+||++|+.+++.++||..+..++.|+.+|++|||.||.+|++.
T Consensus 1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~ 73 (75)
T cd02678 1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAKK 73 (75)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999653
No 9
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.77 E-value=2.5e-18 Score=125.76 Aligned_cols=69 Identities=35% Similarity=0.568 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
++++|++++++||++|++|+|++|+.+|++||++|+++++.++|+..|+.++.|+.+||+|||.||++|
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 367999999999999999999999999999999999999999999999999999999999999999875
No 10
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.74 E-value=1.4e-17 Score=123.61 Aligned_cols=72 Identities=29% Similarity=0.510 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
++++|++++++||+.|+.|+|++|+.+|.+|+++|+.+++.++|+..|..++.++.+||+|||.||..+..+
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~~ 73 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLKKQ 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467999999999999999999999999999999999999999999999999999999999999999998653
No 11
>KOG0739|consensus
Probab=99.72 E-value=2.7e-17 Score=152.81 Aligned_cols=119 Identities=26% Similarity=0.340 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-
Q psy1410 1 MASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKKKM- 78 (246)
Q Consensus 1 M~~~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e-~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~- 78 (246)
|.+++++||+++++|++.|++++|+||+.+|+.|++||+.++||| .+++.|+.+|.|+.||++|||+||.+|+.....
T Consensus 3 ~~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~~ 82 (439)
T KOG0739|consen 3 NGSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKGA 82 (439)
T ss_pred cchHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 346899999999999999999999999999999999999999999 677799999999999999999999999864321
Q ss_pred cC---------cchhhhhcC--CCCccchHHhHHHhhcccccEEEeeCCcccchh
Q psy1410 79 GN---------YHEQIEIAN--NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKH 122 (246)
Q Consensus 79 g~---------~~~~~~i~e--n~~G~sYe~lFg~yl~~~~~~I~ieDPYIr~~h 122 (246)
++ ....-...+ +.-|---.+-+..-|.+ .|.+|.|.|++.-
T Consensus 83 ~k~~~~a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~s---AIv~EKPNVkWsD 134 (439)
T KOG0739|consen 83 GKKGDEAVATVPKGKKKDSDGEGEDDEPEKKKLRSALNS---AIVREKPNVKWSD 134 (439)
T ss_pred CCCCccccCCCCCCCCCCccccccCCChhHHHHHHHhhh---hhhccCCCCchhh
Confidence 11 111122222 11122346788888876 7999999999753
No 12
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.70 E-value=1.2e-16 Score=118.81 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 3 SSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 3 ~~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
++.++|++++.+||++|+.|+|++|+.+|++|++.|+.+++.++|+..++.++.|+.+|++|||+||..+..
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~ 74 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLE 74 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999998854
No 13
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.65 E-value=7.2e-16 Score=116.29 Aligned_cols=66 Identities=30% Similarity=0.517 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH----HHHHHHHHHHHhhhh
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIE----TYINRAEVLKGKLDE 74 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~----eYm~RAE~LK~~l~~ 74 (246)
+++|+.++++|++.|++|+|+||+.+|.+||++|+. ++|+..++.++.|+. +||+|||+||.++.+
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~~ 72 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----TSNETMDQALQTKLKQLARQALDRAEALKESMSK 72 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999999998 789999999999996 999999999999864
No 14
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=97.23 E-value=0.0031 Score=48.17 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL 45 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e 45 (246)
....|.+.+.+|+..|+.|..++|+.+|+.||+.|...+.-.
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999999998654
No 15
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=96.40 E-value=0.018 Score=45.90 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC----hhHHHH-H-HHHHHHH-HHHHHHHHHhhhhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN----KGDQQK-I-RDKIETY-INRAEVLKGKLDEK 75 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d----~~kK~~-l-r~Ki~eY-m~RAE~LK~~l~~~ 75 (246)
....|..+.++|..+...|+.+.|+.+|...+.++ ..+..-|| +..... + ..+..+- +++||.||..|+..
T Consensus 34 y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpdy~~~~~~~~~~~~~~~~~~~il~~lE~Lk~~L~~r 111 (115)
T PF08969_consen 34 YLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPDYKKDKNSYKKLLGKKKLNEVILEELEKLKPSLKER 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCCCCCTHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999988 77755443 232222 2 3344455 89999999999753
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.53 E-value=0.22 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
|..+..+|......|+|++|+.+|++||++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345678899999999999999999999973
No 17
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=90.03 E-value=0.98 Score=40.92 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---------------CChhH---HHHHHHHHHHHHHHHHHHHHhh
Q psy1410 24 WTESLTFYQDGVTELLKHVRGL---------------SNKGD---QQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 24 y~EAl~lY~eaIe~Ll~~lk~e---------------~d~~k---K~~lr~Ki~eYm~RAE~LK~~l 72 (246)
..||+.+|..|+.+|-.+|... +.... -+-+|.+.++.++|||.++..+
T Consensus 69 ~~E~LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwlr~rfneclekae~lr~~l 135 (238)
T PF12063_consen 69 SAEALVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWLRERFNECLEKAEFLRLRL 135 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998877431 12222 3558999999999999999999
No 18
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.46 E-value=0.9 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 11 LLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 11 ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
+..-|.-+.+.|+|++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34557778899999999999999874
No 19
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.10 E-value=1.5 Score=26.35 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
.+...|.-+.+.|++++|+.+|++|+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567788889999999999999999974
No 20
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.01 E-value=2 Score=25.56 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
-+...|.-+=+.|+|++|+.+|++|+++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677788899999999999999864
No 21
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.19 E-value=0.94 Score=31.41 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
.|..+...|..+=..|+|++|+.+|.+||++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4677888999999999999999999999974
No 22
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.86 E-value=2.6 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 42 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~l 42 (246)
|..+-.-|.-+=..|+|++|+.+|+++++..-.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 34455667788889999999999999998766554
No 23
>KOG2709|consensus
Probab=85.66 E-value=3.9 Score=40.67 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh-cCCC------hh--HHHHHHHHHH----HHHHHHHHHHHhh
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR-GLSN------KG--DQQKIRDKIE----TYINRAEVLKGKL 72 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk-~e~d------~~--kK~~lr~Ki~----eYm~RAE~LK~~l 72 (246)
..|...+.+++-.|+.+.+++|+..|+.||.+++..+. ++++ +. .-..+.+|++ +--.|.+-||+..
T Consensus 20 k~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL~kqk 99 (560)
T KOG2709|consen 20 KGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVLKKQK 99 (560)
T ss_pred HHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47888999999999999999999999999999998442 2221 11 1123444444 4456777777766
Q ss_pred hh
Q psy1410 73 DE 74 (246)
Q Consensus 73 ~~ 74 (246)
++
T Consensus 100 qs 101 (560)
T KOG2709|consen 100 QS 101 (560)
T ss_pred cc
Confidence 54
No 24
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=79.22 E-value=8.9 Score=30.51 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy1410 21 RGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIR 55 (246)
Q Consensus 21 ~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr 55 (246)
.|++.+|+..|...-..|..-+-.+|++..+..++
T Consensus 109 ~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 109 QGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 56666666666666666666665566666655443
No 25
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=77.83 E-value=21 Score=32.41 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERG-RWTESLTFYQDGVTELLKHVRGL-------SNKGDQQKIRDKIETYINRAEVLK 69 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g-~y~EAl~lY~eaIe~Ll~~lk~e-------~d~~kK~~lr~Ki~eYm~RAE~LK 69 (246)
.+.|+++.+.|.-.+=.| +...+...|..||-+|-.++... .++.-|..+.+-+..--.|--.|+
T Consensus 162 YdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~~Lr 234 (238)
T PF12063_consen 162 YDRALEMSRTAAVDELFGENLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLSALR 234 (238)
T ss_pred HHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999 99999999999996555555544 567777777665555445544444
No 26
>KOG2880|consensus
Probab=77.66 E-value=12 Score=36.49 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChh----HHHHHHHHH-HHHHHHHHHHHHhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKG----DQQKIRDKI-ETYINRAEVLKGKL 72 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~----kK~~lr~Ki-~eYm~RAE~LK~~l 72 (246)
+...|.++++.|--+-..|+++-|+.+|..=+.+|+.-+..-+|-. .|+-++.|+ .+-+.|+++||.-+
T Consensus 31 yfRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~~~klk~~~~p~~deL~~~l 104 (424)
T KOG2880|consen 31 YFRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDIRKKLKEEAFPRIDELKAKL 104 (424)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567999999999999999999999999999999998654333321 133344443 34567777777654
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=76.51 E-value=7.1 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTEL 38 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~L 38 (246)
-|..+..-|.-....|++++|+.+|++|++++
T Consensus 45 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 45 TANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 35556666777777888888888888888754
No 28
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=76.27 E-value=14 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRG 44 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~ 44 (246)
+|...-..|..+++++++.||+.+++.|.+.+-.+.+.
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~ 289 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPG 289 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcc
Confidence 67777788999999999999999999999987666654
No 29
>PRK10775 cell division protein FtsQ; Provisional
Probab=76.26 E-value=13 Score=34.30 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhccCcEEE-EEecCCccceEEEecCCeEEEeCCc
Q psy1410 163 VKQEENLKQLQESLRKMKITLN-INYSNTLHDREIVLSNDWVIKIGRG 209 (246)
Q Consensus 163 ~~q~~~l~~i~~sl~~~gi~l~-~~~~~tiHDR~I~~dnGw~IkigRG 209 (246)
....+.+.++.+-|...|..+. +.+++ -|.=.|+++||-.|+|||+
T Consensus 168 ~~vl~~~~~l~~~L~~~~~~v~~l~l~~-r~~W~l~L~nGi~v~LGr~ 214 (276)
T PRK10775 168 NEVLQGYREMGQVLAKDKFTLKEAAMTA-RRSWQLTLNNDIRLELGRG 214 (276)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEEcC-CCeEEEEeCCCeEEEECCc
Confidence 3466788899999998887666 33443 6778899999999999997
No 30
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=75.92 E-value=14 Score=34.94 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 67 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~ 67 (246)
.|+.....|..+.++++|.||+..++.|.+.+..+.+..+....-..+...|++-+++||.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~aek 314 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAAKK 314 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhh
Confidence 4777778999999999999999999999997766655322211123355555555555543
No 31
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=75.05 E-value=3.3 Score=31.83 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=51.5
Q ss_pred hcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEE
Q psy1410 104 LDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITL 183 (246)
Q Consensus 104 l~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l 183 (246)
|...-++|+|.=||| ... ++++.++....+-..|+|+|.....+. .......+..+..-+...|+++
T Consensus 5 i~~A~~~i~i~~~~~-~~~------~i~~~l~~~~~~gv~v~ii~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~v 71 (126)
T PF13091_consen 5 IKSAQKSIWIASPYI-TDP------DIIKALLDAAKRGVKVRIIVDSNQDDS------EAINLASLKELRELLKNAGIEV 71 (126)
T ss_dssp HHT-SSEEEEEESSS--SC------HHHHHHHHHHHTT-EEEEEEECGGGHH------CCCSHHHHHHHHHHHHHTTHCE
T ss_pred HhccCCEEEEEEEec-CcH------HHHHHHHHHHHCCCeEEEEECCCcccc------chhhhHHHHHHHhhhccceEEE
Confidence 334357999999999 222 234444443333467999998743210 1112567888888888899998
Q ss_pred EEEecCCccceEEEecCCeEE
Q psy1410 184 NINYSNTLHDREIVLSNDWVI 204 (246)
Q Consensus 184 ~~~~~~tiHDR~I~~dnGw~I 204 (246)
. ..+|..-+.+|+-+.|
T Consensus 72 ~----~~~H~K~~i~d~~~~i 88 (126)
T PF13091_consen 72 R----NRLHAKFYIIDDKVAI 88 (126)
T ss_dssp E----S-B--EEEEETTTEEE
T ss_pred e----cCCCcceEEecCccEE
Confidence 7 6899999999965444
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=74.16 E-value=6.2 Score=27.16 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHh---------------cC-CHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDE---------------RG-RWTESLTFYQDGVT 36 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~---------------~g-~y~EAl~lY~eaIe 36 (246)
.++|+....+|+++|. .| ++.+|+..|..||+
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4577777777777765 45 46666666665554
No 33
>KOG4648|consensus
Probab=73.47 E-value=3 Score=40.81 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
+.++.++-.+.-++=++|+|+||++||..||.+
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~ 126 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV 126 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc
Confidence 445555555566667789999999999999864
No 34
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.40 E-value=5.8 Score=21.21 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 11 LLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 11 ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
....|.-+-..|++++|..+|++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34667778888999999999998875
No 35
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=73.21 E-value=11 Score=28.44 Aligned_cols=41 Identities=24% Similarity=0.139 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy1410 2 ASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 42 (246)
Q Consensus 2 ~~~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~l 42 (246)
...+++|.+.++.|-.+=+.|.|..|..+...|++..++++
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lkAl 42 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALKAL 42 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999998887
No 36
>PF08910 Aida_N: Aida N-terminus; InterPro: IPR015006 This entry represents the axin interactor, dorsalization-associated protein family AIDA [].; PDB: 1UG7_A.
Probab=72.34 E-value=46 Score=26.96 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHh
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRG----LSNKGDQQKIRDKIETYINRAEVLKGK 71 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~----e~d~~kK~~lr~Ki~eYm~RAE~LK~~ 71 (246)
.-+++|+++|.=|+..||..-|+.=..-+-..+.. .-.+..++.+.+-..----|++.|...
T Consensus 7 ~s~~ka~dfDsWGQlvEA~deY~~La~~l~k~~~~~~~~~fte~qkk~i~Kia~cL~lRs~~Lq~~ 72 (106)
T PF08910_consen 7 ASFKKATDFDSWGQLVEAIDEYQRLARQLKKEVQSHQDSDFTEDQKKTIGKIATCLELRSKALQSL 72 (106)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHT-SS--SS-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999755556666655 123455555555444444577777754
No 37
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=72.03 E-value=10 Score=35.66 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhc
Q psy1410 9 QFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIA 88 (246)
Q Consensus 9 i~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~~~~~~i~ 88 (246)
..++++|.++++.+ ---|+-|..-|++..|..- ..++ ..+.-+..-|++.|++|..+.... .|.
T Consensus 4 ~~~l~~a~e~~~~~-p~v~Y~c~~ya~~~~l~~~--~~~~----e~~~~~~~Ll~~lE~~K~~~~~~~---------~~~ 67 (380)
T PF04652_consen 4 SPFLKRAQELEKRD-PVVAYYCRLYAVEQILKLK--LRSK----ECRQFLTSLLDKLEKMKAELGDNE---------AIL 67 (380)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHTT-T--T--H----HHHHHHHHHHHHHHHHHHCT---C---------HHC
T ss_pred HHHHHHHHHHhhcC-CEEhHHHHHHHHHHHcCCC--CCCh----hHHHHHHHHHHHHHHhhhccCcHH---------hhc
Confidence 46899999999998 4455555556666444331 1343 355555667999999999886321 111
Q ss_pred CCCCccch-----HHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHH
Q psy1410 89 NNEKGVTY-----EKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELA 134 (246)
Q Consensus 89 en~~G~sY-----e~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~ 134 (246)
+...|..| -+||...+.. .+.=..+.--++.|+=+-+|++.|..+
T Consensus 68 ~~~~~~~~v~~fa~~~f~~a~~~-~~~~~~~~~~~~~f~~a~~~~~~l~~f 117 (380)
T PF04652_consen 68 DDVAAQAYVENFALKLFNRADKE-DRAGRATKQTAKTFYAASTFFEVLNIF 117 (380)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-HHSS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222 4888888865 333334446677888888999888877
No 38
>KOG0603|consensus
Probab=70.94 E-value=3.5 Score=42.29 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHH-hhcCCChhHHHHHHHHHH--HHHHHHHHHHH
Q psy1410 1 MASSIELAQFLLIRAVELDERGRWTESLTFY-QDGVTELLKH-VRGLSNKGDQQKIRDKIE--TYINRAEVLKG 70 (246)
Q Consensus 1 M~~~~~kAi~ll~rAVe~D~~g~y~EAl~lY-~eaIe~Ll~~-lk~e~d~~kK~~lr~Ki~--eYm~RAE~LK~ 70 (246)
|-..+.-+.-++.-|+++|....+..|+..| .++|.++... ++.......|..+..++. .|.-||++|-.
T Consensus 93 ~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~ 166 (612)
T KOG0603|consen 93 MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN 166 (612)
T ss_pred chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh
Confidence 3455678899999999999999999999999 8999988888 788888888999999999 99999999887
No 39
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=70.68 E-value=24 Score=31.76 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDER-GRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA 65 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~-g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RA 65 (246)
..|.-+..-|.-+.+. |++++|+.+|++|++++-.- .++..-..+..++....-+.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHh
Confidence 3444455555666677 89999999999999976532 23444344444444444333
No 40
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=70.41 E-value=9.7 Score=26.37 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDER--------GRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDK 57 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~--------g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~K 57 (246)
.+.|++.+.++++++.. |..-.....|.+|++.|-.+++..|++.....++.+
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 34666666666666542 222223333445555555555566666665555554
No 41
>KOG2997|consensus
Probab=69.57 E-value=5.5 Score=38.27 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
..+|+.+-..||+.++.|+.-+|+..|..|++
T Consensus 16 ~kkA~~l~~~av~~Eq~G~l~dai~fYR~Alq 47 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQDGSLYDAINFYRDALQ 47 (366)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhc
Confidence 46999999999999999999999999999985
No 42
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.92 E-value=15 Score=25.86 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 42 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~l 42 (246)
|..+-.-|.-+=..|+|++|+.+|++|+++ ...+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH
Confidence 445566677788999999999999999997 5444
No 43
>PRK12452 cardiolipin synthetase; Reviewed
Probab=66.51 E-value=68 Score=32.08 Aligned_cols=103 Identities=11% Similarity=0.183 Sum_probs=61.1
Q ss_pred chHHhHHHhh---cccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHH
Q psy1410 95 TYEKLFGRFL---DENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQ 171 (246)
Q Consensus 95 sYe~lFg~yl---~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~ 171 (246)
..+.++.-|+ +..=.+|+|+-||......+ ++.|......=+.|++++...... .-..... ..
T Consensus 341 ~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~~l------~~aL~~Aa~rGV~Vrii~p~~~D~-------~~~~~a~-~~ 406 (509)
T PRK12452 341 DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQET------LTLLRLSAISGIDVRILYPGKSDS-------IISDQAS-QS 406 (509)
T ss_pred hhHHHHHHHHHHHHHhhhEEEEECCccCCCHHH------HHHHHHHHHcCCEEEEEcCCCCCh-------HHHHHHH-HH
Confidence 3445555554 44446999999998776533 333333323335688988542211 1111111 12
Q ss_pred HHHHHhccCcEEEEEecC-CccceEEEecCCeEEEeCCcccc
Q psy1410 172 LQESLRKMKITLNINYSN-TLHDREIVLSNDWVIKIGRGLDI 212 (246)
Q Consensus 172 i~~sl~~~gi~l~~~~~~-tiHDR~I~~dnGw~IkigRGLd~ 212 (246)
.-..|.+.||.+ ++|.+ -+|..-++.|+-|.+.=+-.+|.
T Consensus 407 ~~~~L~~aGv~I-~~y~~~~lHaK~~ivD~~~a~vGS~Nld~ 447 (509)
T PRK12452 407 YFTPLLKAGASI-YSYKDGFMHAKIVLVDDKIATIGTANMDV 447 (509)
T ss_pred HHHHHHHcCCEE-EEecCCCeeeeEEEECCCEEEEeCcccCH
Confidence 224556689998 56765 59999999999888765566654
No 44
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=65.99 E-value=31 Score=32.68 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC--CChh---HHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL--SNKG---DQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e--~d~~---kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
+|+..-..|..+.++++|.||+..++.|++.+..+.+.- .++. .-+.+...|++-+++||+==+.+
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~l~~~i~~~l~~aekdNd~I 306 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEARYGNKAVLEDLQGLKDIVKESLKRAERDNDLI 306 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhhccCee
Confidence 577778899999999999999999999999988887531 1222 22345666777777766655444
No 45
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=65.86 E-value=31 Score=34.28 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHhhHHHHHHHHHhcCCCcc-eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCC
Q psy1410 123 QCYNFLQFCELAIKNCKNVK-RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSND 201 (246)
Q Consensus 123 Q~~N~~~f~E~~v~~~~~~~-~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnG 201 (246)
.-..++++|+.| ++.+.. ++.|||..-... -.+.|-.|-+.....|....|..|+ +|---+.+++|
T Consensus 294 ~~~~l~~l~~~L--nP~~~pGRltlI~RmGa~~----------v~~~LP~li~aV~~~g~~vvW~cDP-MHGNT~~~~~G 360 (439)
T PF01474_consen 294 TPEELVELCDRL--NPDNEPGRLTLITRMGADK----------VRERLPPLIEAVQAAGHPVVWSCDP-MHGNTITTSSG 360 (439)
T ss_dssp -HHHHHHHHHHH--STT--TTSEEEEE---TTT----------HHHHHHHHHHHHHTTT---EEEE-T-STTSEEE-TTS
T ss_pred CHHHHHHHHHHh--CCCCCCCeEEEEecCCcHH----------HHHHhHHHHHHHHHCCCceEEeccC-CCCCceECCCC
Confidence 345688999988 565655 999999977655 4677999999999999999999997 99999999999
Q ss_pred eEEE
Q psy1410 202 WVIK 205 (246)
Q Consensus 202 w~Ik 205 (246)
.+.+
T Consensus 361 ~KTR 364 (439)
T PF01474_consen 361 YKTR 364 (439)
T ss_dssp SEEE
T ss_pred ccCC
Confidence 8875
No 46
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=64.80 E-value=42 Score=23.19 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGR--WTESLTFYQDGVTELL 39 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~--y~EAl~lY~eaIe~Ll 39 (246)
.|+.-+...|+.=..|+ .++|+.+|.+|..++-
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44555555555444444 6899999999997443
No 47
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=64.23 E-value=25 Score=33.23 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR 43 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk 43 (246)
+|+..-..|..++++++|.||+..++.|.+.+-.+.+
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~ 279 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKEANP 279 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 5777788999999999999999999999998877765
No 48
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=63.42 E-value=30 Score=33.05 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRG 44 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~ 44 (246)
.|+.....|..++++++|.||+..|+.|.+.+-.+.+.
T Consensus 251 ~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~~~ 288 (361)
T cd09239 251 ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAIKN 288 (361)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777889999999999999999999999988777743
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=63.25 E-value=28 Score=30.03 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDE---------------RGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLK 69 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~---------------~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK 69 (246)
+.|.+++.+|++.|. .|+|++|+.+|+.+++. ..++..+++.+ +. +++|+.+.
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l------~~~~~~r~~~i-~~----i~~a~~~~ 194 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL------NSPRVNRTQLV-ES----INMAKLLQ 194 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCccHHHHH-HH----HHHHHHHh
Confidence 567777777777765 47778777777776652 23566666655 22 77777775
No 50
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=62.88 E-value=79 Score=31.18 Aligned_cols=99 Identities=10% Similarity=0.179 Sum_probs=57.6
Q ss_pred HhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHh
Q psy1410 98 KLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLR 177 (246)
Q Consensus 98 ~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~ 177 (246)
..+-.-+...=++|+|+-||.-..- .+++.|...+..=+.|+|++..-... .--.... ...-..|.
T Consensus 321 ~~~~~~I~~A~~~I~I~tpYfip~~------~i~~aL~~Aa~rGV~Vril~p~~~d~-------~~~~~~~-~~~~~~L~ 386 (483)
T PRK01642 321 QFLLTAIYSARERLWITTPYFVPDE------DLLAALKTAALRGVDVRIIIPSKNDS-------LLVFWAS-RAFFTELL 386 (483)
T ss_pred HHHHHHHHHhccEEEEEcCCcCCCH------HHHHHHHHHHHcCCEEEEEeCCCCCc-------HHHHHHH-HHHHHHHH
Confidence 3455566553469999999987543 34444443333335689988643322 1111111 11223456
Q ss_pred ccCcEEEEEecC-CccceEEEecCCeEEEeCCccc
Q psy1410 178 KMKITLNINYSN-TLHDREIVLSNDWVIKIGRGLD 211 (246)
Q Consensus 178 ~~gi~l~~~~~~-tiHDR~I~~dnGw~IkigRGLd 211 (246)
+.||.+ ++|.+ -+|..-+..|+-|.+.=.--+|
T Consensus 387 ~~Gv~I-~~y~~~~~HaK~~ivD~~~~~vGS~N~d 420 (483)
T PRK01642 387 EAGVKI-YRYEGGLLHTKSVLVDDELALVGTVNLD 420 (483)
T ss_pred HcCCEE-EEeCCCceEeEEEEECCCEEEeeCCcCC
Confidence 689988 46654 4999999999887654444444
No 51
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=62.47 E-value=34 Score=32.41 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC---CChh---HHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL---SNKG---DQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e---~d~~---kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
.|+..-..|..+.++++|.||+..++.|.+.+..+.+.. +.+. .-+.+...|++-+++||.-=+.|
T Consensus 246 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~~~~~~~~~~~~~~~l~~~v~~~l~~aekdNd~I 317 (353)
T cd09246 246 RAEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQAKGVNGDELIEAVSELEQVINELLERAEKENDCV 317 (353)
T ss_pred HHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 677788899999999999999999999999887777543 2112 22334455666666665544444
No 52
>KOG2003|consensus
Probab=62.04 E-value=44 Score=34.08 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHH---------------HHHhcCCHHHHHHHHHHHHHH-------HHHHhhcCCChhHHH--HHHHHH
Q psy1410 3 SSIELAQFLLIRAV---------------ELDERGRWTESLTFYQDGVTE-------LLKHVRGLSNKGDQQ--KIRDKI 58 (246)
Q Consensus 3 ~~~~kAi~ll~rAV---------------e~D~~g~y~EAl~lY~eaIe~-------Ll~~lk~e~d~~kK~--~lr~Ki 58 (246)
+|-++|+.+..+|. -+-..|+|+.|+.+|..--.. |--+++...|-..++ .+..|
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~k- 718 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADK- 718 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHH-
Confidence 46677888777764 356799999999999874332 222222223322221 13332
Q ss_pred HHHHHHHHHHHHhhhh
Q psy1410 59 ETYINRAEVLKGKLDE 74 (246)
Q Consensus 59 ~eYm~RAE~LK~~l~~ 74 (246)
++|||++|+.-..
T Consensus 719 ---lek~eki~eir~q 731 (840)
T KOG2003|consen 719 ---LEKAEKIKEIREQ 731 (840)
T ss_pred ---HHHHHHHHHHHHH
Confidence 7889999987544
No 53
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=60.37 E-value=14 Score=30.01 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 11 LLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 11 ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
....|-.+|..|+.++|+.+|.+|++
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34678999999999999999999997
No 54
>KOG0553|consensus
Probab=59.42 E-value=13 Score=35.14 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
.|-+|=.+.=++=++++|+||+.+|.+||++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l 110 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL 110 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444455555677777777777777764
No 55
>PRK11263 cardiolipin synthase 2; Provisional
Probab=59.13 E-value=1.1e+02 Score=29.68 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=62.6
Q ss_pred HHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHH
Q psy1410 97 EKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESL 176 (246)
Q Consensus 97 e~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl 176 (246)
+.++-.-+...=.+|+|+.||.-.... +++=+..+++ .=+.|+|++.... + ..-....=..+-..|
T Consensus 208 ~~~~~~~i~~A~~~I~I~tpYf~p~~~---l~~aL~~Aa~---RGV~V~ii~~~~~-d-------~~~~~~a~~~~~~~L 273 (411)
T PRK11263 208 ERHYLKALRQARREVIIANAYFFPGYR---LLRALRNAAR---RGVRVRLILQGEP-D-------MPIVRVGARLLYNYL 273 (411)
T ss_pred HHHHHHHHHHhceEEEEEecCcCCCHH---HHHHHHHHHH---CCCEEEEEeCCCC-C-------cHHHHHHHHHHHHHH
Confidence 456666666656799999999966433 3333333333 3356888875322 2 111111122345567
Q ss_pred hccCcEEEEEecC-CccceEEEecCCeEEEeCCcccc
Q psy1410 177 RKMKITLNINYSN-TLHDREIVLSNDWVIKIGRGLDI 212 (246)
Q Consensus 177 ~~~gi~l~~~~~~-tiHDR~I~~dnGw~IkigRGLd~ 212 (246)
.+.||.+ ++|.+ .+|..-+..|+-|.+.=+=-||.
T Consensus 274 l~~Gv~I-~~y~~~~lHaK~~viD~~~~~vGS~Nld~ 309 (411)
T PRK11263 274 LKGGVQI-YEYCRRPLHGKVALMDDHWATVGSSNLDP 309 (411)
T ss_pred HHCCCEE-EEecCCCceeEEEEECCCEEEEeCCcCCH
Confidence 7889998 46654 59999999999998765555554
No 56
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=59.02 E-value=56 Score=24.61 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRW--TESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y--~EAl~lY~eaIe~L 38 (246)
.+.|+.-+..-|+.=.+|+. ++|+.+|++|+.+.
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~ 41 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHA 41 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56788888888888777765 89999999999733
No 57
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.98 E-value=22 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 12 LIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 12 l~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
..-|-.+-..|++++|..+|+.+++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4557778889999999999999886
No 58
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=58.89 E-value=1.2e+02 Score=28.49 Aligned_cols=94 Identities=11% Similarity=0.224 Sum_probs=66.0
Q ss_pred HhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHh
Q psy1410 98 KLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLR 177 (246)
Q Consensus 98 ~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~ 177 (246)
..+-+-+...-.+|.|.-||.-...++.+- +......-+.|.++|....... ...........-..|.
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~~~~~~~a------l~~a~~~Gv~V~ii~~~~~~~d------~~~~~~~~~~~~~~l~ 340 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVPDRELLAA------LKAAARRGVDVRIIIPSLGAND------SAIVHAAYRAYLKELL 340 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCCCHHHHHH------HHHHHhcCCEEEEEeCCCCCCC------hHHHHHHHHHHHHHHH
Confidence 456677777778999999999999888733 2233333456899998432221 1222244555667777
Q ss_pred ccCcEEEEEecC--CccceEEEecCCeEE
Q psy1410 178 KMKITLNINYSN--TLHDREIVLSNDWVI 204 (246)
Q Consensus 178 ~~gi~l~~~~~~--tiHDR~I~~dnGw~I 204 (246)
+.|+.. |++.. .+|..-+..|+=|.+
T Consensus 341 ~~gv~i-~~~~~g~~lH~K~~iiD~~~~~ 368 (438)
T COG1502 341 EAGVKV-YEYPGGAFLHSKVMIIDDRTVL 368 (438)
T ss_pred HhCCEE-EEecCCCcceeeEEEEcCCEEE
Confidence 889988 88888 799999999998844
No 59
>KOG1840|consensus
Probab=57.75 E-value=54 Score=33.08 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH--HHHHHHHHHHHHHhhh
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDK--IETYINRAEVLKGKLD 73 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~K--i~eYm~RAE~LK~~l~ 73 (246)
.-|..+..-|+.+.+.|+|.||-.+|+.|+++.-+ +-....+.....+..- +-+-++++|+-+.+++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 34677777899999999999999999999998777 4344555555555443 3344667777666665
No 60
>KOG3906|consensus
Probab=57.69 E-value=51 Score=31.32 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhcCCCCccchHHhHH
Q psy1410 22 GRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFG 101 (246)
Q Consensus 22 g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~~~~~~i~en~~G~sYe~lFg 101 (246)
++|++.++-|.++. +.++. +|..-+.....+.+|-.+||.+...+... .|+| .|..|.+-.||..|=|
T Consensus 219 ~K~eksv~r~Le~~--~~~a~----~~~~~eek~~qlae~~K~~ev~~SifDp~-----~He~-lir~G~RrlShrAlqG 286 (399)
T KOG3906|consen 219 IKYEKSVNRYLEDL--AKQAA----DPSNTEEKAKQLAEYHKTAEVFQSIFDPR-----QHEQ-LIRNGNRRLSHRALQG 286 (399)
T ss_pred HHHHHHHHHHHHHH--HHHhh----CCcchHHHHHHHHHHHHHHHHHHHhcChH-----HHHH-HHhccchhhchhhhcC
Confidence 46778887777754 33333 22222334456699999999999988643 4454 3678889999986554
Q ss_pred HhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCC
Q psy1410 102 RFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCK 139 (246)
Q Consensus 102 ~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~ 139 (246)
.-|- -.--++|-..+|||+.-|+-=+.-|..+..
T Consensus 287 A~MI----yFYRdePRFsqP~QlLT~LMDIDSL~TKWR 320 (399)
T KOG3906|consen 287 AMMI----YFYRDEPRFSQPYQLLTFLMDIDSLFTKWR 320 (399)
T ss_pred cEEE----EEecCCCcccCcHHHHHHHHhHHHHHHHHh
Confidence 4332 234579999999999998777777776644
No 61
>KOG1840|consensus
Probab=57.30 E-value=49 Score=33.41 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHH------------HHHHHHHHHHHHHHhh
Q psy1410 18 LDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRD------------KIETYINRAEVLKGKL 72 (246)
Q Consensus 18 ~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~------------Ki~eYm~RAE~LK~~l 72 (246)
+=+.++|.||+.+|++|+..+-.. .++.+|..-..+-. ...+|++||=.|.+.+
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~-~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEV-FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 346899999999999999866655 58888888666653 5788999999988873
No 62
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=55.54 E-value=69 Score=24.11 Aligned_cols=47 Identities=30% Similarity=0.280 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGR--WTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVL 68 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~--y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~L 68 (246)
.+.|+.-+..-|..=..|+ .++|+.+|++|+.+ ...|...++.||+=
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L-----------------~k~c~~~L~~ae~k 56 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIEL-----------------TKLCQDKLQSAEKR 56 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 4677777777777766666 48999999999973 33345567777744
No 63
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=55.25 E-value=68 Score=24.35 Aligned_cols=34 Identities=32% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGR--WTESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~--y~EAl~lY~eaIe~L 38 (246)
.+.|++-+...|..=..|+ .++++.+|.+|+.++
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~ 47 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALA 47 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 4677777888887777776 489999999999743
No 64
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=55.05 E-value=20 Score=20.82 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 11 LLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 11 ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
+...|.-..+.|++++|+..|++-++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45667777788999999998888665
No 65
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=54.97 E-value=74 Score=30.54 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc------C--CCh-------hHHHHHHHHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRG------L--SNK-------GDQQKIRDKIETYINRAEVLKG 70 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~------e--~d~-------~kK~~lr~Ki~eYm~RAE~LK~ 70 (246)
-+|...-..|..++++++|.||+.+++.|.+.+-.+.+. . ++. .--+.+...|+.-++|||.-=+
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~~~~~l~~~I~~~L~~aeKDNd 325 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPGTTAKPDQHLFFRKLGPLVKRTLEKCERENG 325 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhhHHHHHHHHHHHHHHHHHhhhhc
Confidence 367788889999999999999999999999977665431 1 111 1123355677777777776555
Q ss_pred hh
Q psy1410 71 KL 72 (246)
Q Consensus 71 ~l 72 (246)
.|
T Consensus 326 fI 327 (353)
T cd09243 326 FI 327 (353)
T ss_pred ee
Confidence 55
No 66
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.00 E-value=12 Score=36.84 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy1410 164 KQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 215 (246)
Q Consensus 164 ~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~ 215 (246)
+-.+.|+++.+-|...||.+ .+|. +|=||||||..
T Consensus 239 e~~~~~~~v~~~L~~~g~~~--~id~---------------~lvRGLDYYtg 273 (429)
T COG0124 239 ESLEHLEELLALLDALGISY--EIDP---------------SLVRGLDYYTG 273 (429)
T ss_pred HHHHHHHHHHHHHHHcCCCE--EEcc---------------ceecchhhccc
Confidence 56788999999999999774 4554 35799999986
No 67
>KOG0543|consensus
Probab=53.60 E-value=43 Score=32.91 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHhhcCCChhH-H---HHHHHHHHHHHHHHHHH-HHhh
Q psy1410 6 ELAQFLLIRAVELDE--------RGRWTESLTFYQDGVTELLKHVRGLSNKGD-Q---QKIRDKIETYINRAEVL-KGKL 72 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~--------~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~k-K---~~lr~Ki~eYm~RAE~L-K~~l 72 (246)
..|+....++.++|. .|+-..|+.=|..|+..|.++++.+|+.+. + ..+.+|+++|.+|..++ +.++
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368888888888886 466678888899999999999999976533 2 24777888888884443 4444
Q ss_pred h
Q psy1410 73 D 73 (246)
Q Consensus 73 ~ 73 (246)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 3
No 68
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=53.55 E-value=41 Score=33.47 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=57.4
Q ss_pred HHhhHHHHHHHHHhcCCCcc-eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCC
Q psy1410 123 QCYNFLQFCELAIKNCKNVK-RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSND 201 (246)
Q Consensus 123 Q~~N~~~f~E~~v~~~~~~~-~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnG 201 (246)
.-..++++|+.| ++.+.. ++.|||..-..+ -.+.|-.|-+.....|-...|..|+ +|---+.+++|
T Consensus 291 ~p~~l~~L~~~L--nP~~epGRlTLI~RmGa~k----------V~~~LP~li~aV~~~G~~VvW~cDP-MHGNT~~t~~G 357 (443)
T TIGR01358 291 TPDELLRLIERL--NPENEPGRLTLISRMGADK----------IADKLPPLLRAVKAAGRRVVWVCDP-MHGNTEEAASG 357 (443)
T ss_pred CHHHHHHHHHHh--CCCCCCceEEEEeccCchH----------HHHhHHHHHHHHHHcCCceEEeecC-CCCCceeCCCC
Confidence 345688888888 455555 999999876543 5678999999999999999999997 99999999999
Q ss_pred eEEE
Q psy1410 202 WVIK 205 (246)
Q Consensus 202 w~Ik 205 (246)
.+.+
T Consensus 358 ~KTR 361 (443)
T TIGR01358 358 YKTR 361 (443)
T ss_pred ccCC
Confidence 8753
No 69
>KOG4514|consensus
Probab=53.40 E-value=27 Score=31.14 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy1410 25 TESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK 77 (246)
Q Consensus 25 ~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~ 77 (246)
-+.+.+|..|++.|-..+ |...|..|.- +.|||+|-+.++....
T Consensus 160 ~~~vq~yr~aV~kl~d~~----DanIK~~Y~l-----LAk~EEi~ksm~pv~~ 203 (222)
T KOG4514|consen 160 ADNVQVYRNAVNKLTDTL----DANIKCQYQL-----LAKAEEITKSMKPVEQ 203 (222)
T ss_pred hhHHHHHHHHHHHHHHHh----hhhhHHHHHH-----HHHHHHHHHHHhhHHH
Confidence 356789999999998887 6677776655 7899999888876433
No 70
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=52.95 E-value=1.4e+02 Score=27.99 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-------SNKGDQQKIRDKIETYINRAEVLKGKLD 73 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e-------~d~~kK~~lr~Ki~eYm~RAE~LK~~l~ 73 (246)
-.|+.....|..+..+++|.+|+.+++.|.+.+-.+.+.. .-...-..+...+..-++++|.-=+.+-
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy 311 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKCSKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY 311 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCHSCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3677778899999999999999999999999999888543 2244456678888888888888877664
No 71
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=51.60 E-value=92 Score=22.82 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGR--WTESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~--y~EAl~lY~eaIe~L 38 (246)
.+.|+.-+..-|+.=.+|+ .++|+.+|++|+.++
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~ 38 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALA 38 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3566777777777666665 599999999999743
No 72
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=50.95 E-value=74 Score=29.43 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCh-----hHHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNK-----GDQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~-----~kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
-+|+.....|..+++.+++.+|+.+++.|...+-.+.+..... ..-+.+.++|+.-+++||.=-+.+
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~I 320 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKESERLCKSFLLDVWGNLKKLKEKIEKELEKAERENDFI 320 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 3678888899999999999999999999999777776542111 112335555555555555555544
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=50.25 E-value=34 Score=23.14 Aligned_cols=19 Identities=32% Similarity=0.800 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q psy1410 18 LDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 18 ~D~~g~y~EAl~lY~eaIe 36 (246)
+-..|++++|+..|+++++
T Consensus 41 ~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 41 LYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3345666666655555553
No 74
>KOG0547|consensus
Probab=49.82 E-value=22 Score=36.21 Aligned_cols=22 Identities=9% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q psy1410 16 VELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 16 Ve~D~~g~y~EAl~lY~eaIe~ 37 (246)
=.+=.+|+|++|+.+|.+||++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l 144 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL 144 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc
Confidence 3334567899999999999975
No 75
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=49.57 E-value=48 Score=33.25 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=58.1
Q ss_pred hHHhhHHHHHHHHHhcCCCcc-eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecC
Q psy1410 122 HQCYNFLQFCELAIKNCKNVK-RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSN 200 (246)
Q Consensus 122 hQ~~N~~~f~E~~v~~~~~~~-~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dn 200 (246)
-.-..++++|+.| ++.++. ++.|||..-..+ -.+.|-.|-+.....|-.+.|..|+ +|---+.+++
T Consensus 310 ~~pdel~~L~~~L--nP~~epGRlTLI~RmGa~k----------V~~~LP~Li~aV~~~G~~VvW~cDP-MHGNT~~t~~ 376 (474)
T PLN02291 310 MDPEELVKLIEIL--NPQNKPGRLTIIVRMGAEK----------LRVKLPHLIRAVRRAGQIVTWVSDP-MHGNTIKAPS 376 (474)
T ss_pred CCHHHHHHHHHHh--CCCCCCceEEEEeccchHH----------HHHHHHHHHHHHHHcCCceEEeecC-CCCCceeCCC
Confidence 3455689999988 455554 999999876443 5678999999999999999999997 9999999999
Q ss_pred CeEEE
Q psy1410 201 DWVIK 205 (246)
Q Consensus 201 Gw~Ik 205 (246)
|.+.+
T Consensus 377 G~KTR 381 (474)
T PLN02291 377 GLKTR 381 (474)
T ss_pred CccCC
Confidence 98753
No 76
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=49.56 E-value=23 Score=33.36 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
|.++..+|.++=..|+|++|+.+|.+||+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~ 30 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID 30 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34677888888899999999999999886
No 77
>KOG0545|consensus
Probab=49.52 E-value=56 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy1410 7 LAQFLL-IRAVELDERGRWTESLTFYQDGVTELLKHVRGL 45 (246)
Q Consensus 7 kAi~ll-~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e 45 (246)
+|++++ ++.=.+=+.|+|.||..+|.+||-.|-.++--|
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE 215 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE 215 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc
Confidence 667666 456778889999999999999998776665444
No 78
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.79 E-value=1e+02 Score=23.17 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGR--WTESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~--y~EAl~lY~eaIe~L 38 (246)
.+.|+.-+..-|..=..|+ .++|+.+|.+|+.++
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~ 42 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELS 42 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3566666666666666665 489999999999743
No 79
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=48.42 E-value=15 Score=25.02 Aligned_cols=17 Identities=12% Similarity=0.530 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHHHH
Q psy1410 20 ERGRWTESLTFYQDGVT 36 (246)
Q Consensus 20 ~~g~y~EAl~lY~eaIe 36 (246)
+.|+|++|+.+|+++++
T Consensus 3 ~~~~~~~A~~~~~~~l~ 19 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ 19 (68)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 46888888888888775
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=48.19 E-value=2e+02 Score=25.62 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhccC
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIR-------DKIETYINRAEVLKGKLDEKKKMGN 80 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr-------~Ki~eYm~RAE~LK~~l~~~k~~g~ 80 (246)
+.++-..|.+.=++|+|++|+..|++.+. ..|++.....-. -+.++|-.-++..+..++..-....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-------~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN-------RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 44455778888889999988888887554 233333322111 3456677767777777754211111
Q ss_pred cchhhhhcCCCCccchHH----hHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCC
Q psy1410 81 YHEQIEIANNEKGVTYEK----LFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQH 156 (246)
Q Consensus 81 ~~~~~~i~en~~G~sYe~----lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~ 156 (246)
. .-..=..|.|+.. .|.+|+. .|+.-|..-+.++=+.-++.+|+.-|+ ...
T Consensus 105 ~----~~a~Y~~g~~~~~~~~~~~~~~~~--------~~~~~rD~~~~~~A~~~~~~li~~yP~------------S~y- 159 (243)
T PRK10866 105 I----DYVLYMRGLTNMALDDSALQGFFG--------VDRSDRDPQHARAAFRDFSKLVRGYPN------------SQY- 159 (243)
T ss_pred h----HHHHHHHHHhhhhcchhhhhhccC--------CCccccCHHHHHHHHHHHHHHHHHCcC------------Chh-
Confidence 1 1111223444322 2344432 366778888888888888888887654 121
Q ss_pred ccccchHHHHHHHHHHHHHHhccC
Q psy1410 157 SNKTARVKQEENLKQLQESLRKMK 180 (246)
Q Consensus 157 ~~~~~~~~q~~~l~~i~~sl~~~g 180 (246)
.++-...|..|+.-|+.+-
T Consensus 160 -----a~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 160 -----TTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 5556677888888887653
No 81
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.15 E-value=1.4e+02 Score=23.71 Aligned_cols=33 Identities=33% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRW--TESLTFYQDGVTE 37 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y--~EAl~lY~eaIe~ 37 (246)
.+.|+.-+..-|+.=..|+. ++|+.+|++|+.+
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L 44 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMEL 44 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 46777788888887777764 9999999999973
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=48.13 E-value=39 Score=25.85 Aligned_cols=13 Identities=15% Similarity=-0.044 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVEL 18 (246)
Q Consensus 6 ~kAi~ll~rAVe~ 18 (246)
+.|.+.++++++.
T Consensus 34 ~~A~~~~~~~~~~ 46 (135)
T TIGR02552 34 DEALKLFQLLAAY 46 (135)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555554443
No 83
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.97 E-value=37 Score=28.65 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL 45 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e 45 (246)
.+..||+.++.-|+.+||+..|+.|-+.+-. -|+|
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEMiaE-RKGE 136 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEMIAE-RKGE 136 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH---S-
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-HcCC
Confidence 3568999999999999999999999985543 3444
No 84
>KOG0547|consensus
Probab=45.52 E-value=22 Score=36.16 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDE---------------RGRWTESLTFYQDGVTE 37 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~---------------~g~y~EAl~lY~eaIe~ 37 (246)
++.|++|+.+|+++|. .|+.+||+.++.+++++
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5789999999999996 57778899988888863
No 85
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=44.97 E-value=1.3e+02 Score=22.65 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRW--TESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y--~EAl~lY~eaIe~L 38 (246)
.+.|+.-+..-|+.=.+|+. ++|+.+|++|+.++
T Consensus 8 fEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~ 43 (76)
T PRK14068 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLS 43 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56778888888887777764 99999999999743
No 86
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=44.56 E-value=47 Score=25.63 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV 42 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~l 42 (246)
++|.+.+..|-.+=+.|.|..|...-++|+++.++++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~lKA~ 38 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELALKAL 38 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 4677888888888899999999999999999999887
No 87
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=44.25 E-value=69 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
.|.+.+.+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~A 48 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSLNEA 48 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999988877765
No 88
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=43.93 E-value=65 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
.|.+.+.+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 64 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 64 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999888877765
No 89
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=43.13 E-value=72 Score=25.44 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
.|.+.+.+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~A 53 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEA 53 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999988877665
No 90
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=43.00 E-value=76 Score=23.83 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhccCcEE-EEEecCCccceEEEecCCeEEEeCCc
Q psy1410 165 QEENLKQLQESLRKMKITL-NINYSNTLHDREIVLSNDWVIKIGRG 209 (246)
Q Consensus 165 q~~~l~~i~~sl~~~gi~l-~~~~~~tiHDR~I~~dnGw~IkigRG 209 (246)
..+.+.++.+-+....-.+ .+.+++ -.+=.|.++||..|++|+.
T Consensus 43 ~~~~~~~l~~~~~~~~~~i~~i~~~~-~~~~~l~l~dg~~V~lg~~ 87 (117)
T PF03799_consen 43 LLELLRELAALPPPLRSQISEISYDP-RGSWTLYLDDGVEVKLGRS 87 (117)
T ss_dssp HHHHHHHHHHHHHHTTHS-SEEEEET-TSCEEEE-SSS-EEEEESS
T ss_pred HHHHHHHHHHHHHHHhceeeEEEECC-CCeEEEEECCCcEEEEcCc
Confidence 3555555544444433222 122332 3335899999999999998
No 91
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=42.86 E-value=74 Score=24.88 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
=.|.+.+.+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~A 47 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADEELLKA 47 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999998877765
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.71 E-value=51 Score=27.11 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
..|..+...|..+-..|++++|+.+|.+|+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 64 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKL 64 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666788889999999999999999999874
No 93
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=42.37 E-value=1.3e+02 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLK 40 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~ 40 (246)
-+|...-..|+.++++|++.||+...+.|...|-.
T Consensus 294 ~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 294 ARALACKFLGIDAGENGKVGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHH
Confidence 35777777888899999999999999999986443
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.04 E-value=1.9e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 9 QFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 9 i~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
..+...|+-+...|+|++|+.+|.+|++.
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556667777889999999999988874
No 95
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=40.41 E-value=80 Score=31.02 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHhcCCCcc-eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCe
Q psy1410 124 CYNFLQFCELAIKNCKNVK-RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDW 202 (246)
Q Consensus 124 ~~N~~~f~E~~v~~~~~~~-~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw 202 (246)
-.+++++|+.|- +.|.. +..|+-... .++-.+.|-.|-+....-|-.+-|.-|+ +|--.|..+||+
T Consensus 296 ~d~ll~l~d~Ln--P~nepGRLtLi~RmG----------~dKV~d~LP~li~av~~eG~~VvWs~DP-MHGNTi~a~~gy 362 (445)
T COG3200 296 PDELLELIDRLN--PHNEPGRLTLIARMG----------ADKVGDRLPPLVEAVEAEGHQVIWSSDP-MHGNTIKASTGY 362 (445)
T ss_pred HHHHHHHHHhcC--CCCCCceEEeehhhc----------chHHhhhhhHHHHHHHHcCCceEEecCC-CCCceeecCCCC
Confidence 355666666662 33333 666666533 3356888999999999999999999886 999999999999
Q ss_pred EEE
Q psy1410 203 VIK 205 (246)
Q Consensus 203 ~Ik 205 (246)
+-+
T Consensus 363 KTR 365 (445)
T COG3200 363 KTR 365 (445)
T ss_pred ccc
Confidence 854
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=40.37 E-value=64 Score=23.16 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEe
Q psy1410 128 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 187 (246)
Q Consensus 128 ~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~ 187 (246)
++|.+.+.... +.++|++..+..- +.--.+.-..+.+.|++.||++.+.-
T Consensus 12 ~E~A~~l~~~g---~~vtli~~~~~~~-------~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 12 IELAEALAELG---KEVTLIERSDRLL-------PGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp HHHHHHHHHTT---SEEEEEESSSSSS-------TTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred HHHHHHHHHhC---cEEEEEeccchhh-------hhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 45555665443 5799999888643 11124455666778888999987554
No 97
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.06 E-value=1.7e+02 Score=22.35 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Q psy1410 4 SIELAQFLLIRAVELDERGRW--TESLTFYQDGVTEL 38 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y--~EAl~lY~eaIe~L 38 (246)
..+.|+.-+..-|..=..|+. ++++.+|++|+.++
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~ 44 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLA 44 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 356777778888877777764 89999999999733
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=40.05 E-value=85 Score=25.54 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=24.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q psy1410 19 DERGRWTESLTFYQDGVTELLKHVRGLSN 47 (246)
Q Consensus 19 D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d 47 (246)
-..|++++|+..|.+|+..+-.++...|+
T Consensus 124 ~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 124 IEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 37899999999999999999988877654
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=39.20 E-value=40 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 13 IRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
.+|..+=+.|+|++|+.+|+++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777788999999998888774
No 100
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=39.08 E-value=3.1e+02 Score=25.13 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=44.3
Q ss_pred EEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCC
Q psy1410 111 IDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNT 190 (246)
Q Consensus 111 I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~t 190 (246)
+.++.|-++...++ +-.|.+++... .+...++++|...= .++|.+.|.+.=+..-...|.++++-|++
T Consensus 173 ~lv~~~R~~~l~~i--~~~f~~l~~~~-~~~~~a~VtSA~pL---------s~~q~~~L~~~L~k~~g~~V~l~~~VDps 240 (271)
T PRK13430 173 QAVGRPRGRSIEEG--LDELSNLAAAR-RGRSVATVTTAVPL---------SDEQKQRLAAALSRIYGRPVHLNSEVDPS 240 (271)
T ss_pred HHHhCCChhhHHHH--HHHHHHHHHHH-cCeeEEEEEecCCC---------CHHHHHHHHHHHHHHHCCceEEEeeECcc
Confidence 34445544444444 34455555444 34556666665443 23455555543333334679999999987
Q ss_pred ccceEEEecCCeEEEeC
Q psy1410 191 LHDREIVLSNDWVIKIG 207 (246)
Q Consensus 191 iHDR~I~~dnGw~Ikig 207 (246)
| =-|.+|++|
T Consensus 241 L-------IGGivI~vG 250 (271)
T PRK13430 241 V-------LGGMRVQVG 250 (271)
T ss_pred c-------cCcEEEEEC
Confidence 5 357777776
No 101
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=39.01 E-value=92 Score=24.58 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
.|.+.+.+|++.=++|+|++|-.+..+|=+.|..+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~A 50 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMCLNEA 50 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999888888777655
No 102
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=37.68 E-value=2.2e+02 Score=22.98 Aligned_cols=104 Identities=9% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHH
Q psy1410 90 NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENL 169 (246)
Q Consensus 90 n~~G~sYe~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l 169 (246)
...|.++...+-..|...-++|.|+-||+...- -.-.-.+++.|.+.+..=..|++++....... .......+
T Consensus 16 ~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~------~~~~~~~~ 88 (176)
T cd00138 16 RVGGRSDLDALLEAISNAKKSIYIASFYLSPLI-TEYGPVILDALLAAARRGVKVRILVDEWSNTD------LKISSAYL 88 (176)
T ss_pred CcCcchHHHHHHHHHHhhheEEEEEEeEecccc-cccchHHHHHHHHHHHCCCEEEEEEcccccCC------chHHHHHH
Confidence 345667777777788776689999999888521 00012233444444333467999988765541 12445566
Q ss_pred HHHHHHHhccCcEEEEEe-----cCCccceEEEecCC
Q psy1410 170 KQLQESLRKMKITLNINY-----SNTLHDREIVLSND 201 (246)
Q Consensus 170 ~~i~~sl~~~gi~l~~~~-----~~tiHDR~I~~dnG 201 (246)
..|++.. ..||.+.+-- ....|..-+++|+-
T Consensus 89 ~~l~~~~-~~~i~~~~~~~~~~~~~~~H~K~~iiD~~ 124 (176)
T cd00138 89 DSLRALL-DIGVRVFLIRTDKTYGGVLHTKLVIVDDE 124 (176)
T ss_pred HHHHHhh-cCceEEEEEcCCcccccceeeeEEEEcCC
Confidence 6665544 3467765321 25689988888875
No 103
>KOG4555|consensus
Probab=37.58 E-value=97 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~L 38 (246)
++...++=.+||.+-++|+.++|+.++.+||.++
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~ 73 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLA 73 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc
Confidence 3456677789999999999999999999999865
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=37.38 E-value=50 Score=32.99 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhccCcEE
Q psy1410 163 VKQEENLKQLQESLRKMKITL 183 (246)
Q Consensus 163 ~~q~~~l~~i~~sl~~~gi~l 183 (246)
..-....+..++.|.+.||-+
T Consensus 311 ~~al~~ae~~r~~L~~r~Vlv 331 (453)
T PLN03098 311 TLAMQKAERYRTELLKRGVLL 331 (453)
T ss_pred HHHHHHhHHHHHHHHHcCcEE
Confidence 344455566688888888754
No 105
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=37.32 E-value=1e+02 Score=27.70 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy1410 25 TESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNY 81 (246)
Q Consensus 25 ~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~ 81 (246)
+-=+..|-++++-++.-++.+++...+ ..+.+|-.|.+.||..++..+.....
T Consensus 26 ~~rl~~yv~~L~~~l~~L~~~~~~~s~----e~l~eY~~ri~~Lk~l~~~~~~~s~~ 78 (251)
T PF09753_consen 26 QWRLEKYVETLREMLEELEESLSKPSK----EVLNEYSERIDFLKGLIEAEKLESPT 78 (251)
T ss_pred hHhHHHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHHHHHHhcccccccc
Confidence 334788899998888888877444333 44588999999999999876554333
No 106
>KOG1936|consensus
Probab=37.22 E-value=35 Score=34.26 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCe
Q psy1410 123 QCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDW 202 (246)
Q Consensus 123 Q~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw 202 (246)
++....+++|.+...++ +++.+. ..+-.+-|.+|=+-|...|+.=.+.||-
T Consensus 276 ~~~g~~eL~e~l~~d~~-------l~~n~~---------a~eal~dlk~Lf~y~~~fg~s~~isfDl------------- 326 (518)
T KOG1936|consen 276 SLKGLDELLEKLIADPK-------LSQNEA---------AKEALADLKQLFEYLEIFGISERISFDL------------- 326 (518)
T ss_pred hhccHHHHHHHHhcCCc-------ccccHH---------HHHHHHHHHHHHHHHHHcCCcceEEeeh-------------
Confidence 44566788888876632 111111 2234455666667788899988788875
Q ss_pred EEEeCCccccccc
Q psy1410 203 VIKIGRGLDIFCH 215 (246)
Q Consensus 203 ~IkigRGLd~fq~ 215 (246)
++-||||||--
T Consensus 327 --SLARGLDYYTG 337 (518)
T KOG1936|consen 327 --SLARGLDYYTG 337 (518)
T ss_pred --HHhccchhhhc
Confidence 56899999974
No 107
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=36.01 E-value=99 Score=25.32 Aligned_cols=40 Identities=23% Similarity=0.010 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy1410 4 SIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR 43 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk 43 (246)
.+++|...+..|...=+.|.|..|...=++|+++.++++=
T Consensus 9 ~~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL 48 (132)
T COG2250 9 WLRRAERDLKLAKRDLELGDYDLACFHAQQAVELALKALL 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999988873
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=35.53 E-value=94 Score=29.25 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHHH
Q psy1410 21 RGRWTESLTFYQDGV 35 (246)
Q Consensus 21 ~g~y~EAl~lY~eaI 35 (246)
.|+|++|+..+..||
T Consensus 49 ~g~~~eAl~~~~~Al 63 (356)
T PLN03088 49 LGNFTEAVADANKAI 63 (356)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
No 109
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=34.96 E-value=1.1e+02 Score=21.37 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy1410 15 AVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET 60 (246)
Q Consensus 15 AVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~e 60 (246)
|+..=+-|+|.+|.. ++-.+++.+|+...-..|+..|++
T Consensus 8 Aig~ykl~~Y~~A~~-------~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 8 AIGHYKLGEYEKARR-------YCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHTT-HHHHHH-------HHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHH-------HHHHHHhhCCCcHHHHHHHHHHHH
Confidence 455555566666554 444555678887766666665554
No 110
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.88 E-value=84 Score=23.41 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHH
Q psy1410 23 RWTESLTFYQDGVTE 37 (246)
Q Consensus 23 ~y~EAl~lY~eaIe~ 37 (246)
-.++|+.+|++|+.+
T Consensus 17 ~Leesl~lyeeG~~L 31 (69)
T PRK14070 17 PLEESIKLFERGVEL 31 (69)
T ss_pred CHHHHHHHHHHHHHH
Confidence 358999999999973
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=34.13 E-value=91 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
..|..+...|+..-..|+|++|+.+|..|+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45666777888888889999999999988875
No 112
>KOG4234|consensus
Probab=33.37 E-value=1.5e+02 Score=27.29 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDERGRWTESLTFYQDGVTEL 38 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~L 38 (246)
+++|-++=...-++=+.|.|++|..-|++||+..
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c 125 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESC 125 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC
Confidence 5666666677777777777777777777777653
No 113
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.32 E-value=1.3e+02 Score=29.91 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRDKIETYIN 63 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~l-k~e~d~~kK~~lr~Ki~eYm~ 63 (246)
.-.+.++.|-++=.+|+++||+..+++.|..+.-.+ ....+...-+.+...++||+-
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYil 260 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYIL 260 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHH
Confidence 344678889999999999999999999886544333 222334455567778888875
No 114
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.79 E-value=3.5e+02 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHhhcCCC
Q psy1410 4 SIELAQFLLIRAVELDERG-------------------RWTESLTFYQDGVTELLKHVRGLSN 47 (246)
Q Consensus 4 ~~~kAi~ll~rAVe~D~~g-------------------~y~EAl~lY~eaIe~Ll~~lk~e~d 47 (246)
+++.|++-...|+.++-.. +-.+|-.+|.+|.++|.+++..+|+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666666666665532 2244555555555555555554444
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.51 E-value=49 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=10.5
Q ss_pred HhcCCHHHHHHHHHHHHH
Q psy1410 19 DERGRWTESLTFYQDGVT 36 (246)
Q Consensus 19 D~~g~y~EAl~lY~eaIe 36 (246)
-..|+|++|+.+|..|+.
T Consensus 69 ~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 69 MMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 345666666666666554
No 116
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=32.46 E-value=49 Score=31.73 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHhccCcEE-EEEecCCccceEEEecCCeEEEeCCccccccc
Q psy1410 162 RVKQEENLKQLQESLRKMKITL-NINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 215 (246)
Q Consensus 162 ~~~q~~~l~~i~~sl~~~gi~l-~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~ 215 (246)
..+-.+.|.++-+.|..+|+.. .+.||. .++||||||--
T Consensus 282 ~~~al~~L~~l~~~l~~~g~~~~~v~~D~---------------~~vrgl~YYTG 321 (373)
T PRK12295 282 LDAALDRFEARLAALAARGIDLERLRFSA---------------SFGRPLDYYTG 321 (373)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEec---------------ccccCCccccc
Confidence 4456677888889999999863 255554 36899999875
No 117
>KOG1154|consensus
Probab=31.98 E-value=1.2e+02 Score=28.38 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=33.2
Q ss_pred hHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHH
Q psy1410 96 YEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAI 135 (246)
Q Consensus 96 Ye~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v 135 (246)
||.||..|=. .+-+|.|++|-|+.--|..|+-.=++-|+
T Consensus 104 ye~lF~Qy~~-~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL 142 (285)
T KOG1154|consen 104 YETLFTQYGI-TIAQVLVTRNDILDEQQRKNLQNTISELL 142 (285)
T ss_pred HHHHHHHhcc-chheeeecCcchhhHHHHHHHHHHHHHHH
Confidence 9999999975 48999999999999999999977665554
No 118
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=31.57 E-value=76 Score=31.69 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 6 ~kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
..|..+..++..+-+.|+|++|+.+|.+||.
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~ 155 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE 155 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466777888888899999999999988775
No 119
>PF15580 Imm33: Immunity protein 33
Probab=31.56 E-value=39 Score=26.54 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=22.8
Q ss_pred ecC-CeEEEeC-CcccccccC-CCcccccCCCCCccccc
Q psy1410 198 LSN-DWVIKIG-RGLDIFCHV-PEFSIGFTDLSLRPCKE 233 (246)
Q Consensus 198 ~dn-Gw~Ikig-RGLd~fq~~-~~f~lg~~~~~~R~c~e 233 (246)
+|| ||.|+|+ .+-+...++ ....+...+.|--.|+-
T Consensus 27 lDNPGW~v~Idl~eT~l~~~~~~~i~~~~~~~DW~~~~v 65 (90)
T PF15580_consen 27 LDNPGWSVEIDLSETGLEGKKFEWIIIERSENDWIHCKV 65 (90)
T ss_pred ccCCCeEEEEecccccccccccceEeccCCCCCeEEEEE
Confidence 577 9999998 544444443 55666555555555554
No 120
>KOG0543|consensus
Probab=31.25 E-value=1.8e+02 Score=28.65 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA 65 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RA 65 (246)
.|...=.++-.+=+.|+|+.|...|..|+..| ......+++..+...-.++.-|++=|
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA 264 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLA 264 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHH
Confidence 33333344445557899999999999999744 44445556666666666666666644
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.19 E-value=49 Score=34.55 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGV 35 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaI 35 (246)
+|..+...|+.+.+.|+|+||+.+|.+++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35566677888888888888888888877
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=30.92 E-value=2.1e+02 Score=22.98 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELD---------------ERGRWTESLTFYQDGVT 36 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D---------------~~g~y~EAl~lY~eaIe 36 (246)
.+.|+....+|+++| ..|++++|+..|..||.
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666644 47888888888887765
No 123
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=30.58 E-value=49 Score=29.87 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=46.9
Q ss_pred chhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEec
Q psy1410 120 NKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLS 199 (246)
Q Consensus 120 ~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~d 199 (246)
..+|..=|-+++|++.+.... ..||. ... ..+.++-|++.-...++.|.+ |+++.--=+-.++
T Consensus 109 ~~~Q~~vf~~ql~lA~~~~~P-v~iH~--r~a-------------~~~~~~il~~~~~~~~~i~H~-fsG~~~~a~~~l~ 171 (258)
T PRK11449 109 FERQQWLLDEQLKLAKRYDLP-VILHS--RRT-------------HDKLAMHLKRHDLPRTGVVHG-FSGSLQQAERFVQ 171 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-EEEEe--cCc-------------cHHHHHHHHhcCCCCCeEEEc-CCCCHHHHHHHHH
Confidence 368999999999999988544 23454 321 133455555321233566776 9988543344467
Q ss_pred CCeEEEeCCcc
Q psy1410 200 NDWVIKIGRGL 210 (246)
Q Consensus 200 nGw~IkigRGL 210 (246)
.||-|.+|--+
T Consensus 172 ~G~~iS~~g~i 182 (258)
T PRK11449 172 LGYKIGVGGTI 182 (258)
T ss_pred CCCEEEeCccc
Confidence 89999988655
No 124
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=30.41 E-value=1.5e+02 Score=25.23 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 25 TESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 25 ~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
-+.+.+|..|++.+-..+ |...|. +..+|+++|+|-+.+++-
T Consensus 87 v~~~~~y~~sv~~~cdsv----D~sik~-----~y~liakceELn~~M~~v 128 (149)
T PF10157_consen 87 VEHMETYKDSVDKLCDSV----DASIKS-----MYTLIAKCEELNESMKPV 128 (149)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 567888999988888776 444443 445688888887777653
No 125
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.32 E-value=2.6e+02 Score=22.61 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHhhHHHHHHHHHhcCCCcceEEEeec--CCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecC
Q psy1410 123 QCYNFLQFCELAIKNCKNVKRINLLTT--YADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSN 189 (246)
Q Consensus 123 Q~~N~~~f~E~~v~~~~~~~~i~L~T~--~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~ 189 (246)
++...+++++.+ ..+.|.+..+ ..... .+...+.+.-.+.|.+|.+-++++||.+.++.-.
T Consensus 72 ~~~~~i~~a~~l-----g~~~i~~~~g~~~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 72 YLKKAIDLAKRL-----GAKYIVVHSGRYPSGPE-DDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHH-----TBSEEEEECTTESSSTT-SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHh-----CCCceeecCcccccccC-CCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 344455555555 2455666665 11111 1223446677888999999999999999988654
No 126
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=30.22 E-value=2.4e+02 Score=25.07 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---------------------hhHHHHHHHHHHHHHHHHHHHH
Q psy1410 25 TESLTFYQDGVTELLKHVRGLSN---------------------KGDQQKIRDKIETYINRAEVLK 69 (246)
Q Consensus 25 ~EAl~lY~eaIe~Ll~~lk~e~d---------------------~~kK~~lr~Ki~eYm~RAE~LK 69 (246)
.||..+|++||..|-.+++..|+ ...-+.+-++..+|..+|..++
T Consensus 45 ~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 45 PESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 56777777777777777766444 3344456666777777776654
No 127
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.91 E-value=1.2e+02 Score=22.89 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELL 39 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll 39 (246)
+..++..|.-.-.-|++++|+....+||++--
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45577888888888999999999999998544
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=29.20 E-value=1.2e+02 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLK 40 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~ 40 (246)
.|.....+|..+=+.+++++|+.+|++|+++++.
T Consensus 73 ~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKGDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Confidence 3444555677777777999999999999988764
No 129
>PHA02820 phospholipase-D-like protein; Provisional
Probab=28.92 E-value=3.2e+02 Score=26.74 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=59.0
Q ss_pred HHhHHHhhcccccEEEeeCCcccch-----hHHhhHHHHHHHHHh-cCCCcceEEEeecCCCCCCCccccchHHHHHHHH
Q psy1410 97 EKLFGRFLDENVEQIDVTDPYIHNK-----HQCYNFLQFCELAIK-NCKNVKRINLLTTYADRPQHSNKTARVKQEENLK 170 (246)
Q Consensus 97 e~lFg~yl~~~~~~I~ieDPYIr~~-----hQ~~N~~~f~E~~v~-~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~ 170 (246)
...+-.-+...=+.|+|.-||.--. .+....=.+...|.+ ....=+.|+|+...-... ..-....+.
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~~d~-------~~~~~a~~~ 292 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRS-------SFIMRNFLR 292 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEeccCCC-------CccHHHHHH
Confidence 3666667776568999999998776 222222334444432 111124688877632211 112234555
Q ss_pred HHHHHHhccCcEEE---EEe---------cCCccceEEEecCCeEEEeCC
Q psy1410 171 QLQESLRKMKITLN---INY---------SNTLHDREIVLSNDWVIKIGR 208 (246)
Q Consensus 171 ~i~~sl~~~gi~l~---~~~---------~~tiHDR~I~~dnGw~IkigR 208 (246)
.+++ |...|+.+. |.+ ..=+|..-+++| +| .-||=
T Consensus 293 ~l~~-L~~~gv~I~Vk~y~~p~~~~~~~~~~f~HaK~~vvD-~~-a~IGT 339 (424)
T PHA02820 293 SIAM-LKSKNINIEVKLFIVPDADPPIPYSRVNHAKYMVTD-KT-AYIGT 339 (424)
T ss_pred HHHH-HhccCceEEEEEEEcCcccccCCcceeeeeeEEEEc-cc-EEEEC
Confidence 5533 445788775 322 345999999999 69 77773
No 130
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=28.76 E-value=61 Score=30.93 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy1410 163 VKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 215 (246)
Q Consensus 163 ~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~ 215 (246)
..-.+.|.++-+.|...|+...+.||.+ +-||||||--
T Consensus 236 ~~~l~~L~~l~~~l~~~~~~~~i~~D~~---------------lvrgl~YYtG 273 (391)
T PRK12292 236 KRALDELEALAEALEKYGYGIPLSLDLG---------------LLRHLDYYTG 273 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEehh---------------hccCCcCccc
Confidence 3567888899999999988766677764 4677777764
No 131
>KOG4642|consensus
Probab=28.62 E-value=57 Score=30.53 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYIN 63 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~ 63 (246)
.|-.+=.+.-.++...+|..|+.+|.+||- . +|..-..++.++..||.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~-~--------nP~~~~Y~tnralchlk 56 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC-I--------NPTVASYYTNRALCHLK 56 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHh-c--------CCCcchhhhhHHHHHHH
Confidence 455555666677778889999999999884 2 34444456666666664
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=28.15 E-value=1e+02 Score=21.02 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 12 LIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 12 l~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
..+|.-+-..|+|++|+..+..+++
T Consensus 33 ~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 33 LQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456666666666666666666553
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=27.90 E-value=90 Score=31.25 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=15.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy1410 15 AVELDERGRWTESLTFYQDGVTE 37 (246)
Q Consensus 15 AVe~D~~g~y~EAl~lY~eaIe~ 37 (246)
|.-+-..|+++||+.+|..||+.
T Consensus 119 Acaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 119 ACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 33334457777777777777774
No 134
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=27.77 E-value=3.2e+02 Score=23.21 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=31.4
Q ss_pred CCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeC
Q psy1410 139 KNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIG 207 (246)
Q Consensus 139 ~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~Ikig 207 (246)
.+...+.++|...=. ++|.+.|.+.=+......|.|+.+-|++| =-|++|++|
T Consensus 102 ~~~~~~~V~sA~~Ls---------~~q~~~l~~~L~k~~g~~v~l~~~vDpsL-------IGG~ii~ig 154 (184)
T PRK13434 102 KGRVRAQIVSYPSLE---------PAQVDKLGSILSEKFKSEFILEVSEDKNL-------LGGFVVQFN 154 (184)
T ss_pred cCeEEEEEEEcCCCC---------HHHHHHHHHHHHHHHCCEeEEEeeeChHH-------cCceEEEEC
Confidence 455677777764432 23444444332222335788888888864 368888887
No 135
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=27.76 E-value=86 Score=22.75 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=25.7
Q ss_pred eEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEE-EEec
Q psy1410 143 RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLN-INYS 188 (246)
Q Consensus 143 ~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~-~~~~ 188 (246)
.|++.|..++ +...-.+.+.+|++.|...|+.+. +.++
T Consensus 39 ~v~~~~~~~~--------~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 39 SVQFTAENPE--------TKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp EEEEE--SSH--------HHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred EEEEEECCHH--------HHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 5555554433 255678889999999999999987 4443
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.59 E-value=1.2e+02 Score=22.07 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
.+...|..+-+.|+|++|+.+|.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777788999999999888775
No 137
>KOG2847|consensus
Probab=27.31 E-value=30 Score=32.31 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=62.8
Q ss_pred chhHHhhHHHHHHHHHhcCCCcceEEEeecCC------CCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccc
Q psy1410 120 NKHQCYNFLQFCELAIKNCKNVKRINLLTTYA------DRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHD 193 (246)
Q Consensus 120 ~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d------~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHD 193 (246)
+.-|++|.=.|.+++-+.++| +-|+|..+ +.- ---+-.-.---+++.++.+|+.++|.|+=.|-+++
T Consensus 48 Nk~~v~n~e~l~~l~~~Rp~n---~PLiTVSNH~S~vDDP~--~W~~L~~~~f~~~~~~RWtlaAhdICF~n~~~S~f-- 120 (286)
T KOG2847|consen 48 NKLLVHNRETLTALLESRPPN---RPLITVSNHMSCVDDPL--VWGILKLRLFLNLKNIRWTLAAHDICFTNPFHSNF-- 120 (286)
T ss_pred cccccccHHHHHHHHHcCCCC---CCeEEEecchhccCCce--eEEEechhhhcchhhhheehhhhhchhccHHHHHH--
Confidence 445788888888888888877 45555432 210 00000123455678999999999999998887777
Q ss_pred eEEEecCCeEEEeCCcccccccC
Q psy1410 194 REIVLSNDWVIKIGRGLDIFCHV 216 (246)
Q Consensus 194 R~I~~dnGw~IkigRGLd~fq~~ 216 (246)
|+.|=.|-+-||--+||+.
T Consensus 121 ----FslGkclPi~RG~GvYQ~g 139 (286)
T KOG2847|consen 121 ----FSLGKCLPIVRGEGVYQKG 139 (286)
T ss_pred ----HhcCceEeeeccCcccccc
Confidence 8999999999999999974
No 138
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=26.99 E-value=2.9e+02 Score=21.10 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 32 QDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 32 ~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
..|++.+-.+.....||..|..|...+.+.-.-+++|..++...
T Consensus 14 ~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~ 57 (111)
T PF09537_consen 14 HDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQEL 57 (111)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444455555455689999999999999999999999999754
No 139
>KOG4626|consensus
Probab=26.94 E-value=65 Score=34.09 Aligned_cols=32 Identities=9% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---HHHHhhc
Q psy1410 13 IRAVELDERGRWTESLTFYQDGVTE---LLKHVRG 44 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~eaIe~---Ll~~lk~ 44 (246)
.-|+-+-+.|++++|+.||++||.. |-+++..
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 4567788999999999999999963 5555544
No 140
>PRK12370 invasion protein regulator; Provisional
Probab=26.72 E-value=89 Score=31.04 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDE---------------RGRWTESLTFYQDGVT 36 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~---------------~g~y~EAl~lY~eaIe 36 (246)
.+.|...+.+|+++|. .|++++|+.+|++|++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678888888888764 5667777777766664
No 141
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=26.28 E-value=1.3e+02 Score=25.94 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHH
Q psy1410 6 ELAQFLLIRAVELD---------------ERGRWTESLTFYQDGVT 36 (246)
Q Consensus 6 ~kAi~ll~rAVe~D---------------~~g~y~EAl~lY~eaIe 36 (246)
+.++..+.++++.+ ..|++++|+.+|..|+.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667776665 67888888888887775
No 142
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.02 E-value=1.1e+02 Score=20.06 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=18.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHh
Q psy1410 20 ERGRWTESLTFYQDGVTELLKHV 42 (246)
Q Consensus 20 ~~g~y~EAl~lY~eaIe~Ll~~l 42 (246)
..++|.+|+.=|++++++..+.+
T Consensus 13 e~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 13 ENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred HhccHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999998766554
No 143
>KOG1156|consensus
Probab=25.67 E-value=2.3e+02 Score=29.81 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHHHHhhcCCChhH----HHHHHHHHHHHHHHH
Q psy1410 5 IELAQFLLIRAVELDE---------------RGRWTESLTFYQDGVTELLKHVRGLSNKGD----QQKIRDKIETYINRA 65 (246)
Q Consensus 5 ~~kAi~ll~rAVe~D~---------------~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~k----K~~lr~Ki~eYm~RA 65 (246)
.+.|.+.+..|+.-|- .++|.||+.||+.|+. .+||... -..|...|..|-.++
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~-------~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK-------IEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3567777777777664 5688999999999873 3433321 122445566666666
Q ss_pred HHHHHhhh
Q psy1410 66 EVLKGKLD 73 (246)
Q Consensus 66 E~LK~~l~ 73 (246)
+.=..+++
T Consensus 130 ~tr~~LLq 137 (700)
T KOG1156|consen 130 ETRNQLLQ 137 (700)
T ss_pred HHHHHHHH
Confidence 66555554
No 144
>PF14733 ACDC: AP2-coincident C-terminal
Probab=25.20 E-value=2.5e+02 Score=21.21 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChh--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhcCCCCccchH
Q psy1410 26 ESLTFYQDGVTELLKHVRGLSNKG--------DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYE 97 (246)
Q Consensus 26 EAl~lY~eaIe~Ll~~lk~e~d~~--------kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~~~~~~i~en~~G~sYe 97 (246)
+.+.+|++||.+++.=++.--.|. .++.+...+..++.+.+.-+..-. + ..|=
T Consensus 3 ~~L~l~K~Ai~~iL~DL~~~c~~~~~~~~~~~~~~~~~~~i~~H~~~V~~a~~~~~-----------L--------~pyl 63 (91)
T PF14733_consen 3 QRLSLCKEAILLILSDLKDNCLPNLFSKLLNASRKIYKRVIDYHIRYVNSAKNIEE-----------L--------QPYL 63 (91)
T ss_pred chHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhHHHHHHHHHHHHHHHHHccCHHH-----------H--------HHHH
Confidence 467889999988887765432222 234455555555554443332211 0 1577
Q ss_pred HhHHHhhcc
Q psy1410 98 KLFGRFLDE 106 (246)
Q Consensus 98 ~lFg~yl~~ 106 (246)
.+|++++..
T Consensus 64 ~lF~~cI~~ 72 (91)
T PF14733_consen 64 ALFSNCIKN 72 (91)
T ss_pred HHHHHHHHc
Confidence 888888864
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.10 E-value=1.3e+02 Score=21.46 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHH
Q psy1410 14 RAVELDERGRWTESLTFY 31 (246)
Q Consensus 14 rAVe~D~~g~y~EAl~lY 31 (246)
.|.-+=+.|+|.+|+.++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444455555555555555
No 146
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=25.03 E-value=3.1e+02 Score=20.85 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 25 TESLTFYQDGVTELLKHVRG---LSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 25 ~EAl~lY~eaIe~Ll~~lk~---e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
+.|+..+...++.+..+++. ..|+...+.+...+.+.......|+.+|..
T Consensus 86 ~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 86 EAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555543 379999999999999999999999998865
No 147
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=24.88 E-value=79 Score=30.42 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy1410 162 RVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 215 (246)
Q Consensus 162 ~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~ 215 (246)
..+-.+.|.+|...|...|+...+.||.++ -||||||--
T Consensus 239 ~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~---------------vr~l~YYtG 277 (423)
T PRK12420 239 VAEGVNELQQLQQYLIALGINENCIFNPFL---------------ARGLTMYTG 277 (423)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEeccc---------------cCCCcccce
Confidence 445677899999999999988666777643 577777753
No 148
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=24.82 E-value=2.7e+02 Score=26.72 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR---GLSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk---~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
+|+..-..|..+...+++.+|+...++|++++-.+.+ .-+.+...+.|.+-++..++|+..-.+.++.
T Consensus 243 ~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~~~~~~c~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 313 (350)
T cd09244 243 KALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEALRLHRMCRFLRNVDSLQEVLKEAHDRSLNKYSSLEE 313 (350)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566667778788888888888888888876665555 2234556677888888888887776666653
No 149
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=24.45 E-value=4.2e+02 Score=22.49 Aligned_cols=53 Identities=17% Similarity=0.051 Sum_probs=32.3
Q ss_pred CCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeC
Q psy1410 139 KNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIG 207 (246)
Q Consensus 139 ~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~Ikig 207 (246)
.+...++++|...-.+ +|.+.+.+.=+.-....|.+++.-|++| =.|.+|++|
T Consensus 106 ~~~~~~~V~sA~~Ls~---------~~~~~i~~~l~~~~g~~v~l~~~vDpsl-------IGGi~i~~g 158 (179)
T PRK13436 106 LNITYGEIYTTEPLSE---------VQISRFESKLSKKLNKKVHLVNKIDPKL-------IAGIKIKVD 158 (179)
T ss_pred cCeEEEEEEecCCCCH---------HHHHHHHHHHHHHHCCeEEEEeecCHHH-------cCceEEEEC
Confidence 4566778877655422 3444444433333345788888888874 357777766
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=24.38 E-value=1.3e+02 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 13 IRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
..|..+=..|++++|+..+.++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~ 28 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE 28 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344445557788887777777664
No 151
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=24.07 E-value=2e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy1410 7 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKH 41 (246)
Q Consensus 7 kAi~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~ 41 (246)
.|.+.+-+|++.=++|+|++|=.+-++|=+.|..+
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~eA 52 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEANDALNEA 52 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999988877765
No 152
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.59 E-value=1.9e+02 Score=26.16 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHhhHHHHHHHHHhcCCCcceEEEee-cCCCCCCCccccchHHHHHHHHHHHHHHhccCc
Q psy1410 123 QCYNFLQFCELAIKNCKNVKRINLLT-TYADRPQHSNKTARVKQEENLKQLQESLRKMKI 181 (246)
Q Consensus 123 Q~~N~~~f~E~~v~~~~~~~~i~L~T-~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi 181 (246)
.+..|.-+++++.+.--+-..||++| ++|..+ ..=...|++|.+.|.+.|+
T Consensus 44 h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P--------~S~~~yl~~l~~~l~~~~~ 95 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPP--------KSALKYLEELEEKLAEIGI 95 (223)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-T--------TTHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCc--------chHHHHHHHHHHHHHhhCC
Confidence 45678889999988865556899999 577654 3457789999999998765
No 153
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=23.58 E-value=4.5e+02 Score=24.81 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhccCcEEEEEecC-----CccceEEEecCCeEEEeCCcccccccC-CCc
Q psy1410 162 RVKQEENLKQLQESLRKMKITLNINYSN-----TLHDREIVLSNDWVIKIGRGLDIFCHV-PEF 219 (246)
Q Consensus 162 ~~~q~~~l~~i~~sl~~~gi~l~~~~~~-----tiHDR~I~~dnGw~IkigRGLd~fq~~-~~f 219 (246)
...+......|++-..+.|+++-+---+ .+-||-+++++|-++-.|.--++|..| +.|
T Consensus 167 ~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 167 ARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 4456666777776666678765443221 267999999999999999988899887 444
No 154
>PF11389 Porin_OmpL1: Leptospira porin protein OmpL1; InterPro: IPR021058 OmpL1 is a member of the outer membrane (OM) proteins in the mammalian pathogen Leptospira, related proteins are restricted to the Spirochaetes. Specifically, it is a porin [].
Probab=22.90 E-value=99 Score=28.56 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=24.7
Q ss_pred cEEEEEecCCccceEEEecCCeE--------EEeCCcccccccCCCccc-ccC
Q psy1410 181 ITLNINYSNTLHDREIVLSNDWV--------IKIGRGLDIFCHVPEFSI-GFT 224 (246)
Q Consensus 181 i~l~~~~~~tiHDR~I~~dnGw~--------IkigRGLd~fq~~~~f~l-g~~ 224 (246)
++.+|.|+. + +|-+.=|.+ +=+|-||+||+ ++||+ |..
T Consensus 122 ~DmtW~ysa-i---~IP~~vGiKl~V~EDaavY~GAGl~YF~--GGWsl~G~n 168 (267)
T PF11389_consen 122 VDMTWSYSA-I---QIPITVGIKLNVTEDAAVYIGAGLHYFR--GGWSLNGMN 168 (267)
T ss_pred EEeEeeeeE-E---EeeeEEEEEEeeccccceeeccceeeec--cceeccccc
Confidence 577888875 2 333333332 23689999999 89998 544
No 155
>PLN02530 histidine-tRNA ligase
Probab=22.85 E-value=84 Score=31.08 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEecCC
Q psy1410 164 KQEENLKQLQESLRKMKITLNINYSNT 190 (246)
Q Consensus 164 ~q~~~l~~i~~sl~~~gi~l~~~~~~t 190 (246)
+..+.|++|.+.|...|+.-.+.||.+
T Consensus 304 ~~l~~L~~l~~~l~~~g~~~~i~~Dl~ 330 (487)
T PLN02530 304 EAVADLKQLFSLAEAYGYQDWLVFDAS 330 (487)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEEecc
Confidence 467788888889999998744555543
No 156
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=22.84 E-value=3e+02 Score=19.83 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 30 FYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 30 lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
-+.+|++-++.++...++.........++.+...+.+.|+..|..
T Consensus 23 ~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 23 KVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999998877666556777888889999999999988865
No 157
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=22.83 E-value=3.2e+02 Score=26.14 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=43.3
Q ss_pred hcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCC--CcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCc
Q psy1410 104 LDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCK--NVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKI 181 (246)
Q Consensus 104 l~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~--~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi 181 (246)
+.| ...|+|.|=-|..-.|--.||+-+- ..+. ..-+|+-+..+.... ...-.+.=..|.+--+..||
T Consensus 106 ~~g-~~~vHIID~~i~~G~QW~~LiqaLa---~R~~gpp~LrIT~i~~~~~~~-------~~~l~~~g~rL~~fA~~lgv 174 (374)
T PF03514_consen 106 FEG-ERRVHIIDFGIGFGVQWPSLIQALA---SRPGGPPSLRITGIGPPNSGS-------ADELQETGRRLAEFARSLGV 174 (374)
T ss_pred hcc-CcceEEEeccCCcchHHHHHHHHHh---cCCCCCCeEEEEeccCCCCCc-------HHHHHHHHHHHHHHHHHcCc
Confidence 444 4899999999999999999887554 4332 233455444444333 22333333333333345688
Q ss_pred EEEEEe
Q psy1410 182 TLNINY 187 (246)
Q Consensus 182 ~l~~~~ 187 (246)
.|++.-
T Consensus 175 ~fef~~ 180 (374)
T PF03514_consen 175 PFEFHP 180 (374)
T ss_pred cEEEEe
Confidence 887654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=22.34 E-value=1.8e+02 Score=21.10 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 14 RAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 14 rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
.|..+-+.|+|++|+.+|.+++.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 34444455666666666666654
No 159
>KOG0553|consensus
Probab=22.25 E-value=3.4e+02 Score=25.88 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhH----HHHHHHHHHHHHHHHHHHHHh
Q psy1410 10 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD----QQKIRDKIETYINRAEVLKGK 71 (246)
Q Consensus 10 ~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~k----K~~lr~Ki~eYm~RAE~LK~~ 71 (246)
+-...|-++-.+|+-..+-..|++||+.+-.++...|.... |..--.++.+|-+-.+..+.-
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 46678888999999999999999999999999998854433 334444455554444444433
No 160
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=21.55 E-value=6.6e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q psy1410 34 GVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL 72 (246)
Q Consensus 34 aIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l 72 (246)
|++.++..+...+.+..|+.+.+.+.+++++.++-.+.+
T Consensus 67 ai~~~~~~i~~~~~~~~k~~l~~~~~~~~~e~~~a~~~I 105 (301)
T TIGR00511 67 AVRYVLKYMSGEDVETLRETVIERADAFINQSDKAQERI 105 (301)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555443445566777777777777766666555
No 161
>PF13643 DUF4145: Domain of unknown function (DUF4145)
Probab=21.45 E-value=2.9e+02 Score=19.92 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH--HHHHHhhhhhhhcc
Q psy1410 14 RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA--EVLKGKLDEKKKMG 79 (246)
Q Consensus 14 rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RA--E~LK~~l~~~k~~g 79 (246)
+|..+=..+ +..|...+..++|.++..+...++. .|.++|......- +.+.+.+..-...|
T Consensus 2 eA~~~~~~~-~~~a~~~~R~~lE~~~~~~~~~~~~----~L~~~I~~l~~~~~~~~~~~~~~~iR~~G 64 (87)
T PF13643_consen 2 EAERCYNSD-PRAAAVMARRALEFIVKELGIKKGK----NLNEKINKLRKKGLPPDIRDWLHAIRKIG 64 (87)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566666666 9999999999999999998643333 3666666655554 55555555444444
No 162
>PLN02972 Histidyl-tRNA synthetase
Probab=21.33 E-value=1.1e+02 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCccccccc
Q psy1410 163 VKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCH 215 (246)
Q Consensus 163 ~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~IkigRGLd~fq~ 215 (246)
.+-.+.|.+|-+.|...|+.-.+.||.+ +.||||||--
T Consensus 567 ~~aL~eL~~L~~~L~~~gv~~~I~fDls---------------LvRGLDYYTG 604 (763)
T PLN02972 567 RAALDELEIMFKALEKSKAIGKIVFDLS---------------LARGLDYYTG 604 (763)
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEECCc---------------ccCCCcccCc
Confidence 3567788888899999998655667654 4788888874
No 163
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=21.24 E-value=4.3e+02 Score=21.01 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy1410 24 WTESLTFYQDGVTELLKHVR---GLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGN 80 (246)
Q Consensus 24 y~EAl~lY~eaIe~Ll~~lk---~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~ 80 (246)
++.++..+.++++.+..++. .+.|+...+.+..-+.++-..+.-++..+..-+..|.
T Consensus 86 l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 86 LENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 45556666666655555543 3589999999999999999999999999977655553
No 164
>PRK11189 lipoprotein NlpI; Provisional
Probab=21.22 E-value=1.6e+02 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVT 36 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe 36 (246)
|.....+|+-++..|++.+|+..|.+|++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~ 92 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA 92 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566778888888888888888877775
No 165
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=20.92 E-value=4.4e+02 Score=21.01 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1410 28 LTFYQDGVTELLKHVRGLS--NKGDQQKIRDKIETYINRAEVLKGKLDEK 75 (246)
Q Consensus 28 l~lY~eaIe~Ll~~lk~e~--d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~ 75 (246)
+.-....|+-+...+...+ ++..++.+..-+.+--.++..+|..|+.-
T Consensus 18 i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l 67 (151)
T cd00179 18 ISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666555 57788888888999999999999998764
No 166
>PF14059 DUF4251: Domain of unknown function (DUF4251); PDB: 3FYF_B.
Probab=20.77 E-value=1.7e+02 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.420 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEec-CCeEEEeCCc-cccccc
Q psy1410 162 RVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLS-NDWVIKIGRG-LDIFCH 215 (246)
Q Consensus 162 ~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~d-nGw~IkigRG-Ld~fq~ 215 (246)
.+++.+..+++++.|....-.|+++.--....+.|.++ |+|-|+|--. ++.|=|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~f~i~~~~~~p~~g~~~~l~~~~~~i~v~~dsv~~~Lp 58 (138)
T PF14059_consen 3 AEKKAQKFAQVKEALESRNFKIEVDRAYPMRGRSIYLTGNPYFIEVSGDSVDSYLP 58 (138)
T ss_dssp -----HHHHHHHHHHHTT-EEEEEEEEEETTS-EEE--TTTSEEEEETTEEEEEES
T ss_pred chhhHHHHHHHHHHHHcCCeEEEEEEEEeCCCCcEEecCCCCEEEEECCEEEEEec
Confidence 34456689999999999998888776555778899999 9999988544 444444
No 167
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=20.51 E-value=3.1e+02 Score=19.19 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1410 26 ESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDE 74 (246)
Q Consensus 26 EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~ 74 (246)
..|..-+.++..+..++-...||..|+.|..-..+..+-+++|=.++..
T Consensus 8 d~L~~~K~~~~~y~~a~~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~ 56 (64)
T PF07875_consen 8 DLLNSEKAAARNYATAALECANPELRQILQQILNECQQMQYELFNYMNQ 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666689999999999999999999999888864
No 168
>KOG4234|consensus
Probab=20.47 E-value=5e+02 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q psy1410 13 IRAVELDERGRWTESLTFYQD 33 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~e 33 (246)
+||-.+.+-.+|++|+.=|..
T Consensus 173 RRAeayek~ek~eealeDyKk 193 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKK 193 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 445555555555555555544
No 169
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.45 E-value=1.8e+02 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHHHHhccCcEEEEEec
Q psy1410 134 AIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYS 188 (246)
Q Consensus 134 ~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~sl~~~gi~l~~~~~ 188 (246)
||+.||+++.|+|=.+ -.+..=..++.-|.-.||+| ++=|
T Consensus 36 Lv~~CP~lk~iqiP~S--------------Y~~t~Sksi~mfL~mqgI~L-leGD 75 (131)
T PF08004_consen 36 LVERCPNLKAIQIPPS--------------YYKTLSKSIKMFLEMQGIEL-LEGD 75 (131)
T ss_pred HHHhCCCCeEEeCChH--------------HHHHHhHHHHHHHHhcCcee-eccc
Confidence 5688999999999322 23444556777888899999 4443
No 170
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=20.31 E-value=1.6e+02 Score=23.13 Aligned_cols=82 Identities=16% Similarity=0.325 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhcCCCC
Q psy1410 13 IRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEK 92 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e~d~~kK~~lr~Ki~eYm~RAE~LK~~l~~~k~~g~~~~~~~i~en~~ 92 (246)
..|-+++.+|-|--|- ..|+.++....+...++.+..+-...+..|.--... ...-|..++...=..-..
T Consensus 5 ~~Ae~LE~kGl~RRAA-------~rW~evm~~~~~~~eRe~~~~RR~~Cl~kakR~p~~---~~~f~~l~~Aa~~T~~~M 74 (90)
T PF06069_consen 5 KKAEELEAKGLWRRAA-------TRWLEVMDLAETDKEREWIAQRREYCLRKAKRPPEP---PDNFGDLRKAADRTQKRM 74 (90)
T ss_pred HHHHHHHHcccHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccCCCC---hhHHHHHHHHHHHHHHHc
Confidence 4577777777655554 455555555568888899998888888766521111 111122233322223344
Q ss_pred cc--chHHhHHHhh
Q psy1410 93 GV--TYEKLFGRFL 104 (246)
Q Consensus 93 G~--sYe~lFg~yl 104 (246)
|. .++.+|..|=
T Consensus 75 Gi~~~~~~~fR~y~ 88 (90)
T PF06069_consen 75 GIDQPNGEIFRNYK 88 (90)
T ss_pred CCCCCccHHHhcCC
Confidence 44 5567776663
No 171
>KOG1585|consensus
Probab=20.25 E-value=1.8e+02 Score=27.49 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy1410 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELL 39 (246)
Q Consensus 8 Ai~ll~rAVe~D~~g~y~EAl~lY~eaIe~Ll 39 (246)
|.--+.+|..+=+.-+-++|+.+|+.|+.++.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44445666667777788999999999998765
No 172
>KOG2460|consensus
Probab=20.17 E-value=2.1e+02 Score=29.56 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy1410 13 IRAVELDERGRWTESLTFYQDGVTELLKHVRGL 45 (246)
Q Consensus 13 ~rAVe~D~~g~y~EAl~lY~eaIe~Ll~~lk~e 45 (246)
.-|+.+-..++|.||+.+|..|..++..+.+.-
T Consensus 427 ~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l 459 (593)
T KOG2460|consen 427 YIAVSYQAKKKYSEALALYVRAYSYLQEVNSEL 459 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346777788999999999999999999988543
No 173
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=20.10 E-value=6e+02 Score=24.29 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhccCcEEEEEecC-----CccceEEEecCCeEEEeCCcccccccC-CCc
Q psy1410 162 RVKQEENLKQLQESLRKMKITLNINYSN-----TLHDREIVLSNDWVIKIGRGLDIFCHV-PEF 219 (246)
Q Consensus 162 ~~~q~~~l~~i~~sl~~~gi~l~~~~~~-----tiHDR~I~~dnGw~IkigRGLd~fq~~-~~f 219 (246)
...+......|++-..+.|+++-+---+ .+-||-+++++|-++-.|.--++|+.| +.|
T Consensus 177 ~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 177 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 3345555666665555667765443221 267999999999999999999999987 444
Done!