RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1410
(246 letters)
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 69.2 bits (169), Expect = 1e-15
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 1 MASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET 60
S A +L RAVELD R+ ++L YQ+G+ LL+ ++G + +R KI
Sbjct: 8 QDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISG 67
Query: 61 YINRAEVLKGKLDEKKKMGN 80
Y++RAE +K LD++K+ G
Sbjct: 68 YMDRAENIKKYLDQEKEDGK 87
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 66.1 bits (161), Expect = 1e-14
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 2 ASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETY 61
+ L+ +A++LD ++ E+ T Y +G+ L+ ++ N + IR K Y
Sbjct: 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEY 66
Query: 62 INRAEVLKGKLDEKKKMG 79
+NRAE LK L+ ++
Sbjct: 67 LNRAEQLKKHLESEEANA 84
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 62.4 bits (151), Expect = 8e-13
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1 MASS---IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR-GLSNKGDQQKIRD 56
M+S+ ++ A L +A + D+ G + E+L YQ V L V+ +Q IR
Sbjct: 8 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 67
Query: 57 KIETYINRAEVLKGKLDEKKKMGN 80
K Y++RAE LK L K+K
Sbjct: 68 KCTEYLDRAEKLKEYLKNKEKKAQ 91
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 53.5 bits (128), Expect = 7e-10
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA 65
++A+ I AV+ D+ G+ +++T+Y+ + L + + + I Y R
Sbjct: 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68
Query: 66 EVLKGKLDEKKKMG 79
L+ L
Sbjct: 69 SYLEKVLPASSDGS 82
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 52.0 bits (124), Expect = 3e-09
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA 65
E+A+ I AV+ D+ G E++T Y+ + L + V + I Y R
Sbjct: 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRI 76
Query: 66 EVLK 69
EVLK
Sbjct: 77 EVLK 80
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A
1wr0_A 2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 45.7 bits (108), Expect = 6e-06
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 1 MASS---IELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRD 56
MAS+ ++ A L +A + D+ G + E+L YQ V L V +Q IR
Sbjct: 1 MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60
Query: 57 KIETYINRAEVLKGKLDEKKK 77
K Y++RAE LK L +K+K
Sbjct: 61 KCTEYLDRAEKLKEYLKKKEK 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 49/192 (25%)
Query: 42 VRGLSNKGDQQKIRDKIETY-----------IN--RAEVLKG------KLD---EKKKMG 79
+ L+ + Q + +K ++ +N + V+ G L+ K K
Sbjct: 341 ISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 80 NYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCK 139
+ +Q I +E+ + K RFL V P+ H+ L I K
Sbjct: 400 SGLDQSRIPFSERKL---KFSNRFL-------PVASPF-HSHL-----LVPASDLIN--K 441
Query: 140 NVKRINLLTTYAD--RPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIV 197
++ + N+ D P + + + + E + I L + + T
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQ----- 495
Query: 198 LSNDWVIKIGRG 209
++ G G
Sbjct: 496 FKATHILDFGPG 507
Score = 40.4 bits (94), Expect = 4e-04
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 56/153 (36%)
Query: 5 IELAQFLLIRAVELDERGR--------------------WTESLTFYQDGVTELLKHVRG 44
+E A F ++ +G + ++ + V E++ RG
Sbjct: 1739 MEKAAFEDLK-----SKGLIPADATFAGHSLGEYAALASLADVMSI-ESLV-EVV-FYRG 1790
Query: 45 LSNKGDQQKIRDKIETY----INRAEVLKGKLDEK---------KKMGNYHEQIEIAN-N 90
++ + + Y IN V E K+ G +EI N N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG---WLVEIVNYN 1847
Query: 91 EKGVTY---------EKLFGRFLDEN-VEQIDV 113
+ Y + + L+ +++ID+
Sbjct: 1848 VENQQYVAAGDLRALDTV-TNVLNFIKLQKIDI 1879
Score = 36.2 bits (83), Expect = 0.009
Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 79/237 (33%)
Query: 64 RAEVLKGKLDE-KKKMGNYHEQIEIANNEKGVTYEKLFGRFL---DENVEQIDV--TDPY 117
A L+ ++ K + E A +++ T +L G+FL VE V D
Sbjct: 29 IASQLQ---EQFNKILPEPTE--GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 118 IHNKHQCY--NFLQFCE--------LAIKNCKNVKRINLLTTY------ADRP---QHSN 158
++ + +L+ + L + VK L+ Y A RP + ++
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 159 KTARVKQEENLK-------Q------LQESLRKMKITLNINYSNTLHD---------REI 196
R E N + Q +E LR + T Y + D E+
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQT----YHVLVGDLIKFSAETLSEL 198
Query: 197 VLSNDWVIKI-GRGLDI---------------FCHVPEFS---IGFTDLS--LRPCK 232
+ + K+ +GL+I +P S IG L+ + K
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAK 254
Score = 35.8 bits (82), Expect = 0.012
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 167 ENLKQLQESLRKMKITLNINYSNTLH-DREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTD 225
++L L +LRK K ++ S +R++ SN R L + P F +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-------RFLPVA--SP-F---HSH 430
Query: 226 LSLRPCKETVVN-------IFHRASL 244
L L P + + F+ +
Sbjct: 431 L-LVPASDLINKDLVKNNVSFNAKDI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 133 LAIKNCKN----VKRINLLTTYADRPQHSNKTARVKQEENLKQLQESL--RKMKITLNIN 186
L +KNC + ++ + L D N T+R N+K S+ ++ +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 187 YSNTLHDREIVLSNDWVIKIGRGLDIFCHV 216
Y N L +VL N K ++ C +
Sbjct: 243 YENCL----LVLLNVQNAKAWNAFNLSCKI 268
Score = 37.1 bits (85), Expect = 0.004
Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 76/205 (37%)
Query: 80 NYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTD-----PYIHNKHQCYNFLQ----- 129
++H ++ E Y+ + F D V+ D D I +K + + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 130 ------FCELAIKNCKNVKR-------IN---LLTTYADRP-QHSNKTAR---------- 162
F L K + V++ IN L++ Q S T
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 163 ---------VKQEENLKQLQESLRKMKITLNINYSNTLH----------------DREIV 197
V + + +L+++L +++ N+ + ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 198 LSND----WVIKIGRGLDIFCHVPE 218
D W + + C+ PE
Sbjct: 178 CKMDFKIFW-LNLKN-----CNSPE 196
Score = 35.6 bits (81), Expect = 0.013
Identities = 38/244 (15%), Positives = 68/244 (27%), Gaps = 87/244 (35%)
Query: 77 KMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQ--FCELA 134
+ N + + +KL + + D + H L+
Sbjct: 188 NLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 135 IKNC-------KNVKRIN--------LLTT----YADRPQHSNKTARVKQEENLKQLQ-- 173
+NC +N K N LLTT D + T + + + L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPD 301
Query: 174 ---------------------------------ESLRKMKITLNINYSNTLHDREIVLSN 200
ES+R T + N+ + D+ L+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK---LTT 357
Query: 201 DWVIKIG-------------RGLDIF---CHVPE--FSIGFTDLSLRPCKETVVNIFHRA 242
+I+ L +F H+P S+ + D+ VVN H+
Sbjct: 358 --IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKY 414
Query: 243 SLIK 246
SL++
Sbjct: 415 SLVE 418
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.036
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Query: 164 KQEENLKQLQESLRKMKI-------TLNINYS 188
KQ LK+LQ SL K+ L I +
Sbjct: 19 KQA--LKKLQASL---KLYADDSAPALAIKAT 45
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 116
Score = 32.4 bits (73), Expect = 0.045
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 6 ELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD------------QQK 53
+ A + + + DE G+ E+ +Y+ G+ LL+ + S + + QQK
Sbjct: 20 KKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQK 79
Query: 54 IRDKIETYINRAEVLKGKLDEKKK 77
+++ ++ R E+L+ L +
Sbjct: 80 MKETLQNVRTRLEILEKGLATSLQ 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 33.6 bits (77), Expect = 0.053
Identities = 10/108 (9%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 53 KIRDKIETYINRAEVL--KGKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFGRFL 104
++ ++ +YI A ++ + E + + +++ +G L +
Sbjct: 265 ELFPRVNSYIYMALIMADRNDSTEYYN--YFDKALKLDSNNSSVYYHRGQMNFIL-QNY- 320
Query: 105 DENVE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRIN 145
D+ + ++D + + + + KR
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 16/71 (22%)
Query: 52 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 111
+ I++K + Y++R Y + + + + F + I
Sbjct: 97 RVIKEKRDAYVSRLN------------AIYQNNLT----KSHIEIIRGHAAFTSDPKPTI 140
Query: 112 DVTDPYIHNKH 122
+V+ H
Sbjct: 141 EVSGKKYTAPH 151
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 28.7 bits (65), Expect = 1.9
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 29/122 (23%)
Query: 8 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD---------------QQ 52
LL+ + + R S F + + SN G+ +
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92
Query: 53 KIR---DKIETYINRAEVLK--GKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFG 101
+R D I+ YIN A L G ++ + Y ++ ++ G + L G
Sbjct: 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQ--AYVSALQYNPDLYCVRSDLGNLLKAL-G 149
Query: 102 RF 103
R
Sbjct: 150 RL 151
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 19/108 (17%)
Query: 53 KIRDKIETYINRAEVL--KGKLDEKKKMGNYHEQIEI------ANNEKGVTYEKLFGRFL 104
+ +YI A L K E K + + +++ +G Y L +
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFK--FFQKAVDLNPEYPPTYYHRGQMYFIL-QDY- 326
Query: 105 DENVE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRIN 145
E ++ + Y + + K
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.8 bits (62), Expect = 2.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 166 EENLKQLQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIG 207
EE ++L + + + HD E+ + D VI+I
Sbjct: 96 EERRRKLITIMERYL-----KKIPQVILVSHDEELKDAADHVIRIS 136
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase,
ATP-binding, cell cycle, cell division, cytoplas
hydrolase, microtubule; NMR {Mus musculus}
Length = 78
Score = 26.5 bits (58), Expect = 2.2
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 1 MASSIELAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQK 53
M S+++ + A E G + ++ +YQ + ++ K++ + + +QK
Sbjct: 5 MTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQK 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 27.5 bits (62), Expect = 3.7
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 28/134 (20%)
Query: 56 DKIETYINRAEVL--KGKLDEKKKMGNYHEQIEIANNE------KGVTYEKLFGRFLDEN 107
+K E + K K Y E I+ A + + KL F E
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVK--AYTEMIKRAPEDARGYSNRAAALAKL-MSF-PEA 192
Query: 108 VE------QIDVTDPYIH-NKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSN-K 159
+ + D + K ++ A++ + + + +N
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD--------AEVNNGS 244
Query: 160 TARVKQEENLKQLQ 173
+AR + K Q
Sbjct: 245 SAREIDQLYYKASQ 258
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 27.1 bits (61), Expect = 6.1
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 18/71 (25%)
Query: 52 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 111
++ + YI + +E G+T RF+D + I
Sbjct: 81 PRLVAGRDRYIGAIN------------SFWDGYVE----RLGITRVDGHARFVDAH--TI 122
Query: 112 DVTDPYIHNKH 122
+V + H
Sbjct: 123 EVEGQRLSADH 133
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 27.1 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 110 QIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKR--INLLTTYAD 152
+I DP I N+ C F + C A R IN LT++ D
Sbjct: 17 KIPPNDPRIKNQADCIPFFRSCP-ACPGSNITIRNQINALTSFVD 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.0 bits (61), Expect = 7.7
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 165 QEENLKQLQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIGRG 209
+ + L ++L+K++ + NT+ HD E++ + D +I IG G
Sbjct: 499 PRDTER-LIKTLKKLR-----DLGNTVIVVEHDEEVIRNADHIIDIGPG 541
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 26.8 bits (60), Expect = 8.3
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 18/67 (26%)
Query: 50 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 109
D ++ + ++ +I Y + EK V YE +G+F+ +
Sbjct: 117 DWDRMIEAVQNHIGSLN------------WGYRVALR----EKKVVYENAYGQFIGPH-- 158
Query: 110 QIDVTDP 116
+I T+
Sbjct: 159 RIKATNN 165
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 26.7 bits (60), Expect = 8.4
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 52 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 111
+K+ I+R E G Y E ++ V + F+DE+ ++
Sbjct: 103 EKLVAAKNKEISRLE------------GLYREGLQ----NSNVHIYESRAVFVDEHTLEL 146
Query: 112 DVTDPYIHNKH 122
VT I +
Sbjct: 147 SVTGERISAEK 157
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 26.8 bits (60), Expect = 8.6
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 50 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 109
+ +K+ + +Y N+ +G+ + +G +N
Sbjct: 94 NWKKLIAAKNEAVLDIN------------KSYEGMF---NDTEGLDFFLGWGSLESKN-- 136
Query: 110 QIDVTDP 116
+ V +
Sbjct: 137 VVVVRET 143
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 26.7 bits (60), Expect = 8.8
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 52 QKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQI 111
+ + YI+R +Y + + V K F RF+D +
Sbjct: 82 ETLIASRTAYIDRIH------------TSYENVLG----KNNVDVIKGFARFVDAK--TL 123
Query: 112 DVTDPYIHNKH 122
+V I H
Sbjct: 124 EVNGETITADH 134
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 26.8 bits (59), Expect = 9.2
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 16 VELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 66
V + ++G D V +++++V + ++ + +++ E
Sbjct: 570 VNVGDQGEINIDFINEGDTVEDMMRYV-HIDVDQIRKNYHSLVSQRVDQEE 619
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.7 bits (60), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 172 LQESLRKMKITLNINYSNTL----HDREIVLSNDWVIKIGRG 209
L +L +K N+L HD +++ DW++ +G
Sbjct: 420 LLSALENLK-----RGGNSLFVVEHDLDVIRRADWLVDVGPE 456
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 26.4 bits (59), Expect = 9.6
Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Query: 50 DQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVE 109
+ + + + ++ ++ + Q++ ++ V Y + F+DE+
Sbjct: 91 NWKTMAEAVQNHVKSLN------------WGHRVQLQ----DRKVKYFNIKASFVDEH-- 132
Query: 110 QIDVTDP 116
+ D
Sbjct: 133 TVRGVDK 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,695,322
Number of extensions: 216142
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 61
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)