Query psy14100
Match_columns 137
No_of_seqs 35 out of 37
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 19:33:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3658|consensus 99.4 4E-14 8.7E-19 131.2 3.2 95 13-107 634-740 (764)
2 TIGR02697 WPE_wolbac Wolbachia 72.5 1.8 3.9E-05 27.5 0.8 29 34-74 4-32 (36)
3 TIGR02096 conserved hypothetic 58.5 7.4 0.00016 26.5 1.8 28 31-58 1-28 (129)
4 cd00781 ketosteroid_isomerase 50.2 12 0.00026 25.4 1.8 30 30-59 5-34 (122)
5 PRK14748 kdpF potassium-transp 43.9 14 0.0003 22.6 1.1 16 54-69 3-18 (29)
6 PF00632 HECT: HECT-domain (ub 42.9 20 0.00043 29.0 2.3 32 30-62 221-252 (317)
7 PTZ00355 Rhoptry-associated pr 39.5 18 0.00039 32.9 1.7 38 18-55 275-315 (400)
8 PF02106 Fanconi_C: Fanconi an 36.0 28 0.00061 33.0 2.4 73 4-77 422-506 (559)
9 PF04794 YdjC: YdjC-like prote 34.9 8.9 0.00019 30.8 -0.9 39 15-56 221-261 (261)
10 PF04117 Mpv17_PMP22: Mpv17 / 33.0 24 0.00053 23.0 1.1 35 40-75 3-37 (68)
11 PF12680 SnoaL_2: SnoaL-like d 32.6 14 0.0003 23.1 -0.1 25 34-58 1-25 (102)
12 cd00078 HECTc HECT domain; C-t 31.8 34 0.00075 28.7 2.1 31 30-61 260-290 (352)
13 smart00119 HECTc Domain Homolo 31.8 34 0.00074 28.9 2.1 29 31-60 243-271 (336)
14 COG4986 ABC-type anion transpo 31.6 36 0.00078 32.0 2.3 48 31-78 298-346 (523)
15 PF08525 OapA_N: Opacity-assoc 31.0 27 0.00059 20.6 1.0 17 57-73 14-30 (30)
16 PRK02134 hypothetical protein; 30.1 31 0.00068 28.5 1.5 39 15-56 201-239 (249)
17 PF12870 Lumazine_bd: Lumazine 28.4 42 0.0009 22.0 1.6 32 27-58 6-37 (111)
18 PF10890 DUF2741: Protein of u 27.4 13 0.00028 26.7 -1.0 20 46-65 31-50 (72)
19 COG3080 FrdD Fumarate reductas 26.5 24 0.00053 27.4 0.3 38 42-82 48-85 (118)
20 PF11044 TMEMspv1-c74-12: Plec 26.2 32 0.00069 23.2 0.7 23 52-75 4-26 (49)
21 PRK12996 ulaA PTS system ascor 24.6 31 0.00068 31.9 0.6 31 41-71 209-239 (463)
22 PF11438 N36: 36-mer N-termina 24.1 57 0.0012 20.6 1.5 18 81-98 5-23 (35)
23 PTZ00198 60S ribosomal protein 24.0 41 0.0009 26.2 1.1 24 25-57 24-47 (122)
24 COG3037 SgaT Uncharacterized p 23.4 43 0.00094 31.3 1.3 29 41-69 218-246 (481)
25 PTZ00233 variable surface prot 22.7 32 0.0007 32.0 0.3 60 16-77 393-462 (509)
26 PRK09548 PTS system ascorbate- 22.0 41 0.00089 32.0 0.9 32 40-71 216-247 (602)
27 PRK07353 F0F1 ATP synthase sub 21.9 76 0.0016 23.0 2.1 29 55-86 13-41 (140)
28 PRK10299 PhoPQ regulatory prot 21.4 77 0.0017 21.2 1.8 24 5-29 18-42 (47)
29 CHL00019 atpF ATP synthase CF0 21.2 74 0.0016 24.6 2.0 41 44-86 20-60 (184)
30 PF10164 DUF2367: Uncharacteri 21.1 15 0.00032 27.7 -1.8 23 62-84 68-90 (98)
31 PF09675 Chlamy_scaf: Chlamydi 21.0 54 0.0012 25.4 1.2 37 10-47 17-53 (114)
32 PF02937 COX6C: Cytochrome c o 20.2 32 0.00069 24.2 -0.2 16 49-64 13-28 (73)
33 PF13474 SnoaL_3: SnoaL-like d 20.2 49 0.0011 21.7 0.7 30 30-59 1-30 (121)
34 PF15345 TMEM51: Transmembrane 20.1 16 0.00036 31.0 -1.9 33 57-89 59-91 (233)
No 1
>KOG3658|consensus
Probab=99.44 E-value=4e-14 Score=131.17 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=78.1
Q ss_pred HhccC--ccccC-CCeEeecchh-HHHHhhhhhcccChHH------HHHHHhhhhhhhhhhhhhhheeeceeeeehhhHH
Q psy14100 13 YQMEH--PVYKA-SGTCEKTIQD-VVERFWDIIEEININK------VLLFLRDNVVGTVVVVSAALWIPASCLISYIDRA 82 (137)
Q Consensus 13 ~~~Ch--~G~C~-~G~Cek~vqD-vveRFwDiiE~isin~------v~~fl~dNIVGaVlIvSlLlWIP~SclI~~vD~K 82 (137)
.++|. .|||+ -|+|++.++| .++||||+|.+++..+ +++|+++||||+|+|+++++|||+++++++.|++
T Consensus 634 GsPC~~~~GyCdvf~KCr~vd~dgpl~rl~~li~~~~~~~~~~~w~~~~w~~v~i~gi~~i~~m~~fik~~aVht~s~np 713 (764)
T KOG3658|consen 634 GSPCNNYKGYCDVFGKCRKVDADGPLARLKDLIFQLETIETFAEWIVLNWLAVNIVGIVLIVLMAFFIKICAVHTPSSNP 713 (764)
T ss_pred CCcCcCCcceeccccceeeecCCchHHHHHHHHhhhhhhhhhHHHHHhhhHHhHhHHHHHHHHHHHhhhheEEeccccCc
Confidence 47999 99999 5999999999 9999999999999998 9999999999999999999999999999999998
Q ss_pred HHHHHHhh--hhhhhcccCccCCCCCC
Q psy14100 83 RLRAAYNE--HRKRNAHLEPMFNPEAL 107 (137)
Q Consensus 83 r~k~~ek~--~~w~~~~l~~~~~p~~~ 107 (137)
..|...+. ..|.....-+..||+-.
T Consensus 714 ~kk~~~~~~~~~~s~~~~~~~~~~~~~ 740 (764)
T KOG3658|consen 714 KKKPTHSIAGTLRSRQPKQDIQHPSRS 740 (764)
T ss_pred ccCcccccccccccCCCcccccccCCC
Confidence 65544444 33321122223777544
No 2
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=72.47 E-value=1.8 Score=27.55 Aligned_cols=29 Identities=38% Similarity=0.668 Sum_probs=22.2
Q ss_pred HHHhhhhhcccChHHHHHHHhhhhhhhhhhhhhhheeecee
Q psy14100 34 VERFWDIIEEININKVLLFLRDNVVGTVVVVSAALWIPASC 74 (137)
Q Consensus 34 veRFwDiiE~isin~v~~fl~dNIVGaVlIvSlLlWIP~Sc 74 (137)
|.|-||- |++-.|.-.++|.+ -.|||+|-
T Consensus 4 V~~hwDp-~~li~n~~~~~l~n-----------k~WIPVSa 32 (36)
T TIGR02697 4 VPRHWDP-ENLIANERIRQLYN-----------KNWIPVSA 32 (36)
T ss_pred cccccCc-chhhhhHHHHHHhc-----------cCceeeee
Confidence 3467887 77777777888875 78999984
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=58.52 E-value=7.4 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=25.7
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
|+++++|.+.++.-+++.+.+++.+|++
T Consensus 1 ~~iv~~~~~a~~~~d~~~~~~~~~~d~~ 28 (129)
T TIGR02096 1 TELAQHWIEAFNRGDMDAVLALLAEDVL 28 (129)
T ss_pred CHHHHHHHHHHHCCCHHHHHHhcCCCeE
Confidence 5889999999999999999999999954
No 4
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=50.17 E-value=12 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=27.3
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVVG 59 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIVG 59 (137)
+.++++||++.++.-+++.+.+++.++.+-
T Consensus 5 ~~~~v~~~~~a~~~~D~~~~~~l~aed~~~ 34 (122)
T cd00781 5 MKAAVQRYVEAVNAGDPEGIVALFADDATV 34 (122)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHcCCCeEE
Confidence 468899999999999999999999999863
No 5
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=43.90 E-value=14 Score=22.57 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=13.4
Q ss_pred hhhhhhhhhhhhhhhe
Q psy14100 54 RDNVVGTVVVVSAALW 69 (137)
Q Consensus 54 ~dNIVGaVlIvSlLlW 69 (137)
.+||+|.+++++|+-.
T Consensus 3 ~~vi~G~ilv~lLlgY 18 (29)
T PRK14748 3 AGVITGVLLVFLLLGY 18 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3689999999998764
No 6
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=42.88 E-value=20 Score=29.05 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=25.2
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVVGTVV 62 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIVGaVl 62 (137)
....++.||++++++|.++..+||+ -+.|+.-
T Consensus 221 ~~~~i~~fw~vl~~~s~~~~~~fL~-F~TG~~~ 252 (317)
T PF00632_consen 221 SSPVIQWFWEVLEEFSQEERRKFLR-FVTGSSR 252 (317)
T ss_dssp TSHHHHHHHHHHHHS-HHHHHHHHH-HHHSSSS
T ss_pred ccceeeEEeeeeccCCHHHhheeEE-EecCCCC
Confidence 3688999999999999999888888 5555543
No 7
>PTZ00355 Rhoptry-associated protein 2; Provisional
Probab=39.50 E-value=18 Score=32.89 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=30.1
Q ss_pred ccccC-CCe--EeecchhHHHHhhhhhcccChHHHHHHHhh
Q psy14100 18 PVYKA-SGT--CEKTIQDVVERFWDIIEEININKVLLFLRD 55 (137)
Q Consensus 18 ~G~C~-~G~--Cek~vqDvveRFwDiiE~isin~v~~fl~d 55 (137)
-|+|. .|+ |-.+++|++..|+..|..==+.-=.+||++
T Consensus 275 f~~C~K~gke~yygtpDDli~sFFS~iK~KMi~~hkRFL~~ 315 (400)
T PTZ00355 275 FAFCEKDGKEEYFGTPDDLIPSFFSVMKTKMIYGHKRFLRE 315 (400)
T ss_pred eeEEeeCCchhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888 554 889999999999999887666666777763
No 8
>PF02106 Fanconi_C: Fanconi anaemia group C protein; InterPro: IPR000686 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy. Four complementation groups have been identified, designated A to D. The gene for group C (FACC) has been cloned. Expression of the FACC cDNA corrects the phenotypic defect of FA(C) cells, resulting in normalized cell growth in the presence of DNA cross-linking agents such as mitomycin C (MMC). Gene transfer of the FACC gene should provide a survival advantage to transduced hematopoietic cells, suggesting that FA might be an ideal candidate for gene therapy []. The function of the FACC gene is not known. Immunofluorescence and sub-cellular fractionation studies of human cell lines, and COS-7 cells transiently expressing human FACC, showed the protein to be located primarily in the cytoplasm. Yet, placement of a nuclear localisation signal at the N terminus of FACC directed the hybrid protein to the nuclei of transfected COS-7 cells. Such findings suggest an indirect role for FACC in regulating DNA repair in this group of Fanconi anaemia [].; GO: 0006281 DNA repair
Probab=36.01 E-value=28 Score=33.02 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhccCccccCCCeEeecchhHHHHhhhhhcc--cChHHHHHHH----------hhhhhhhhhhhhhhheee
Q psy14100 4 VLLWTLLIFYQMEHPVYKASGTCEKTIQDVVERFWDIIEE--ININKVLLFL----------RDNVVGTVVVVSAALWIP 71 (137)
Q Consensus 4 ~~~~~~~~~~~~Ch~G~C~~G~Cek~vqDvveRFwDiiE~--isin~v~~fl----------~dNIVGaVlIvSlLlWIP 71 (137)
.|||.|..||+|+++|-|...+ ...+..+.+|+-..+.+ ++..++..-+ ..+-.-.=+++.+++|-|
T Consensus 422 aLLWLLaFyy~P~~~~qqraqt-m~~~k~v~~hL~~L~~~~~ls~~dLqa~~~~~~~~~~~~~~~~L~r~LllnFll~s~ 500 (559)
T PF02106_consen 422 ALLWLLAFYYHPTNGNQQRAQT-MVEAKAVLGHLRMLFRSPPLSARDLQAAAESLGQDPRQPACQQLIRHLLLNFLLFSP 500 (559)
T ss_pred HHHHHHHHhcCCCCccchHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcCCCCCCchHHHHHHHHHHHHHHhCC
Confidence 4799999999999999887322 23346788888888765 5666777666 222233447889999999
Q ss_pred ceeeee
Q psy14100 72 ASCLIS 77 (137)
Q Consensus 72 ~SclI~ 77 (137)
.+--|.
T Consensus 501 ~gh~ia 506 (559)
T PF02106_consen 501 GGHTIA 506 (559)
T ss_pred CcchhH
Confidence 887654
No 9
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=34.92 E-value=8.9 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=22.4
Q ss_pred ccCccccCC--CeEeecchhHHHHhhhhhcccChHHHHHHHhhh
Q psy14100 15 MEHPVYKAS--GTCEKTIQDVVERFWDIIEEININKVLLFLRDN 56 (137)
Q Consensus 15 ~Ch~G~C~~--G~Cek~vqDvveRFwDiiE~isin~v~~fl~dN 56 (137)
+||.|+++. ..-. ......|.++. +-+.-..+.+|+++|
T Consensus 221 m~HPg~~d~~~l~~~--~~~~~~R~~E~-~~L~s~~~~~~l~~~ 261 (261)
T PF04794_consen 221 MCHPGYVDDDELRAI--SSYSQQREKEL-EALTSPEFKEWLEEN 261 (261)
T ss_dssp EE----C-HHHHHCH--STTHCHHHHHH-HHHCSHHHHHHHHC-
T ss_pred EEccCCCCchhhccc--CCccHHHHHHH-HHHcCHHHHHHHhcC
Confidence 799999842 2211 12345577776 888889999999988
No 10
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=33.05 E-value=24 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.2
Q ss_pred hhcccChHHHHHHHhhhhhhhhhhhhhhheeeceee
Q psy14100 40 IIEEININKVLLFLRDNVVGTVVVVSAALWIPASCL 75 (137)
Q Consensus 40 iiE~isin~v~~fl~dNIVGaVlIvSlLlWIP~Scl 75 (137)
++|.-|.+++.+-++++...+ +..+..+|.|+.++
T Consensus 3 ~l~g~s~~~~~~~l~~~~~~~-~~~~~~~Wp~~~~v 37 (68)
T PF04117_consen 3 LLEGKSWEEIKEKLKRDYWPT-LKASWKFWPPAQIV 37 (68)
T ss_pred cccCCCHHHHHHHHHHHHHHH-HHHHhHhHHHHHHH
Confidence 467778888888888777654 55889999988765
No 11
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=32.63 E-value=14 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 34 VERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 34 veRFwDiiE~isin~v~~fl~dNIV 58 (137)
|++|.+.+++-+.+.+.+++.+|++
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~ 25 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAV 25 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEE
Confidence 5789999999999999999999976
No 12
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=31.82 E-value=34 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=25.7
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVVGTV 61 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIVGaV 61 (137)
....|..||++++++|.++-.+||+ =+.|+.
T Consensus 260 ~~~~i~~Fw~vl~~~s~eer~~fL~-F~TG~~ 290 (352)
T cd00078 260 DSPTIQWFWEVLESFTNEERKKFLQ-FVTGSS 290 (352)
T ss_pred CCHHHHHHHHHHHhCCHHHHHHhhe-eecCCC
Confidence 3567899999999999999999998 555544
No 13
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=31.81 E-value=34 Score=28.93 Aligned_cols=29 Identities=21% Similarity=0.554 Sum_probs=23.9
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
...|+.||++++++|.++..+||+ =+.|+
T Consensus 243 ~~~i~~Fw~vl~~~s~ee~~~fL~-F~TG~ 271 (336)
T smart00119 243 SQTIKWFWEVVESFTNEERRKLLQ-FVTGS 271 (336)
T ss_pred CHHHHHHHHHHHHCCHHHHHHhhe-eccCC
Confidence 457789999999999999999997 44443
No 14
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=31.63 E-value=36 Score=32.03 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.9
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhh-hhhhhhhhhhheeeceeeeeh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNV-VGTVVVVSAALWIPASCLISY 78 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNI-VGaVlIvSlLlWIP~SclI~~ 78 (137)
-.+.+..|.-.=+.+++-++--+.|.+ |++++++|+++|||+++-|..
T Consensus 298 ~~v~~slw~~l~~~~~~v~~~~l~~~lRV~vilals~~i~i~lGy~i~~ 346 (523)
T COG4986 298 SSVPESLWGALVSETPAVLLYLLYDYLRVVVILALSFLISIFLGYSIAL 346 (523)
T ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHheee
Confidence 446677788777777887777666665 899999999999999887654
No 15
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=30.99 E-value=27 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhheeece
Q psy14100 57 VVGTVVVVSAALWIPAS 73 (137)
Q Consensus 57 IVGaVlIvSlLlWIP~S 73 (137)
|...+.++.+++|+|.|
T Consensus 14 l~~l~~v~l~ll~~Ps~ 30 (30)
T PF08525_consen 14 LIALSAVVLVLLLWPSS 30 (30)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 44455555567888865
No 16
>PRK02134 hypothetical protein; Provisional
Probab=30.14 E-value=31 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.9
Q ss_pred ccCccccCCCeEeecchhHHHHhhhhhcccChHHHHHHHhhh
Q psy14100 15 MEHPVYKASGTCEKTIQDVVERFWDIIEEININKVLLFLRDN 56 (137)
Q Consensus 15 ~Ch~G~C~~G~Cek~vqDvveRFwDiiE~isin~v~~fl~dN 56 (137)
+||.|+++.-- . ...-...|-.+. +-++-..+.+|+++|
T Consensus 201 m~HPg~~d~~l-~-~ss~~~~R~~El-~~L~sp~~~~~l~~~ 239 (249)
T PRK02134 201 MCHPAFIDNTL-R-QSAYCYPRLTEL-EVLTSASLKEAIAER 239 (249)
T ss_pred EeCCCCCCchh-h-cCCCcchhHHHH-HHHcCHHHHHHHHHc
Confidence 59999999644 3 334455676666 778889999999876
No 17
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=28.39 E-value=42 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.3
Q ss_pred eecchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 27 EKTIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 27 ek~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..++++++..|++.+.+=+.++..+++.....
T Consensus 6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~ 37 (111)
T PF12870_consen 6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESR 37 (111)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHTB--TT-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHhhCcccc
Confidence 67889999999999999999999999886655
No 18
>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex. The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.
Probab=27.35 E-value=13 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.1
Q ss_pred hHHHHHHHhhhhhhhhhhhh
Q psy14100 46 INKVLLFLRDNVVGTVVVVS 65 (137)
Q Consensus 46 in~v~~fl~dNIVGaVlIvS 65 (137)
+.++...+.||-|+++++++
T Consensus 31 p~ki~hk~~enwv~a~~~~~ 50 (72)
T PF10890_consen 31 PKKIHHKFSENWVSATLFLV 50 (72)
T ss_pred HHHHHHHHhhcceeeEEEee
Confidence 68999999999999998877
No 19
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=26.51 E-value=24 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.506 Sum_probs=27.6
Q ss_pred cccChHHHHHHHhhhhhhhhhhhhhhheeeceeeeehhhHH
Q psy14100 42 EEININKVLLFLRDNVVGTVVVVSAALWIPASCLISYIDRA 82 (137)
Q Consensus 42 E~isin~v~~fl~dNIVGaVlIvSlLlWIP~SclI~~vD~K 82 (137)
+++| +.+..|++ |..|.++++.+++ .|.=|-.|++|+.
T Consensus 48 ~~ls-e~llaf~~-s~Igkl~llvl~v-lplw~a~HRihHg 85 (118)
T COG3080 48 DALS-ERLLAFAQ-SPIGKLFLLVLIV-LPLWCALHRIHHG 85 (118)
T ss_pred hhHH-HHHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 3444 55777777 8889888877665 4777999998863
No 20
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=26.25 E-value=32 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=18.7
Q ss_pred HHhhhhhhhhhhhhhhheeeceee
Q psy14100 52 FLRDNVVGTVVVVSAALWIPASCL 75 (137)
Q Consensus 52 fl~dNIVGaVlIvSlLlWIP~Scl 75 (137)
||. -|-+.|+++..+.||-.|+.
T Consensus 4 wlt-~iFsvvIil~If~~iGl~Iy 26 (49)
T PF11044_consen 4 WLT-TIFSVVIILGIFAWIGLSIY 26 (49)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444 68899999999999888764
No 21
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=24.58 E-value=31 Score=31.89 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=25.5
Q ss_pred hcccChHHHHHHHhhhhhhhhhhhhhhheee
Q psy14100 41 IEEININKVLLFLRDNVVGTVVVVSAALWIP 71 (137)
Q Consensus 41 iE~isin~v~~fl~dNIVGaVlIvSlLlWIP 71 (137)
.|++.+-+-++|+|||+|.+.++..+++=|-
T Consensus 209 tEdiklPk~LsflrD~~vs~ai~M~i~f~i~ 239 (463)
T PRK12996 209 TEEMNLPKNLSFLRDSSISISLTMMIIYLIM 239 (463)
T ss_pred HHHhcCCccchHhhccHHHHHHHHHHHHHHH
Confidence 5888888899999999999888777766543
No 22
>PF11438 N36: 36-mer N-terminal peptide of the N protein (N36); InterPro: IPR020952 Antitermination proteins positively regulate expression of bacteriophage early and late gene operons []. Bacterial host RNA polymerase is modified by these antitermination proteins to a terminator-resistant form that transcribes through termination sites that would otherwise prevent expression of the regulated genes. Enterobacteria phage lambda antitermination protein N is essential for the expression of two phage early operons which are critical for phage development. This entry represents the RNA-binding arginine-rich motif (also known as N36) which forms a complex with boxB RNA by binding tightly to the major groove of the boxB hairpin via hydrophobic and electrostatic interactions forming a bent alpha helix []. ; PDB: 1QFQ_B.
Probab=24.10 E-value=57 Score=20.64 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhh-hhccc
Q psy14100 81 RARLRAAYNEHRK-RNAHL 98 (137)
Q Consensus 81 ~Kr~k~~ek~~~w-~~~~l 98 (137)
++|.+..+|..+| ..+-|
T Consensus 5 RRRErRaeKQa~WKa~npl 23 (35)
T PF11438_consen 5 RRRERRAEKQAQWKAANPL 23 (35)
T ss_dssp HHHHHTHHHHHHHHHT-GG
T ss_pred HHHHHHHHHHHHHhhcCcc
Confidence 5677778888999 55544
No 23
>PTZ00198 60S ribosomal protein L22; Provisional
Probab=23.97 E-value=41 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEeecchhHHHHhhhhhcccChHHHHHHHhhhh
Q psy14100 25 TCEKTIQDVVERFWDIIEEININKVLLFLRDNV 57 (137)
Q Consensus 25 ~Cek~vqDvveRFwDiiE~isin~v~~fl~dNI 57 (137)
-|..++.|-+ +++++|.+||.|.|
T Consensus 24 DCt~PveD~I---------~d~a~fekfL~erI 47 (122)
T PTZ00198 24 DCTIPAEDGI---------IDLSGFEQFLQDRI 47 (122)
T ss_pred EcCCcccCCc---------ccHHHHHHHHHHhE
Confidence 3888888876 78999999999876
No 24
>COG3037 SgaT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.39 E-value=43 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=23.0
Q ss_pred hcccChHHHHHHHhhhhhhhhhhhhhhhe
Q psy14100 41 IEEININKVLLFLRDNVVGTVVVVSAALW 69 (137)
Q Consensus 41 iE~isin~v~~fl~dNIVGaVlIvSlLlW 69 (137)
-|++.+-|-++|++||+|-..++..+++-
T Consensus 218 tE~lklPk~L~ffrDs~va~t~tm~ilf~ 246 (481)
T COG3037 218 TEDLKLPKWLSIFRDSIVAITATMMILFF 246 (481)
T ss_pred HHhccCcchhHHHhcchHHHHHHHHHHHH
Confidence 48899999999999999996555555443
No 25
>PTZ00233 variable surface protein Vir18; Provisional
Probab=22.67 E-value=32 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=32.7
Q ss_pred cCccccCCCeEeecc--------hhHHHHhhhhhcccChHH-HHHHHhhhhhhhhhhhhhhh-eeeceeeee
Q psy14100 16 EHPVYKASGTCEKTI--------QDVVERFWDIIEEININK-VLLFLRDNVVGTVVVVSAAL-WIPASCLIS 77 (137)
Q Consensus 16 Ch~G~C~~G~Cek~v--------qDvveRFwDiiE~isin~-v~~fl~dNIVGaVlIvSlLl-WIP~SclI~ 77 (137)
++.+.|+++.|...- .|....|-.||+-|.=++ +-+ +.==+|.||+++||| .-|+==++.
T Consensus 393 ~~e~~~~~~~c~~~~~~El~~dn~nil~~l~~~F~~Iqnn~~iIk--tSaPmGIvLLLGLLFKyTPLWRvLT 462 (509)
T PTZ00233 393 DSETICNESTCREEQNGELTDDGGDKLDILAQIFNVIQSNKNIIK--TSMPIGIALLLGLLFKYTPLWRVLT 462 (509)
T ss_pred ccccccCCcccccccCcccccCCccHHHHHHHHHHHhccCcceee--cccchhHHHHHHHhhccchhHHhhh
Confidence 345677777776542 234445655666555222 111 111379999999997 345433333
No 26
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=21.98 E-value=41 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=26.1
Q ss_pred hhcccChHHHHHHHhhhhhhhhhhhhhhheee
Q psy14100 40 IIEEININKVLLFLRDNVVGTVVVVSAALWIP 71 (137)
Q Consensus 40 iiE~isin~v~~fl~dNIVGaVlIvSlLlWIP 71 (137)
-.|++.+-+-+.|++||+|.+.++..+++=|-
T Consensus 216 stEdiklPk~LsffrD~~vs~ai~M~i~f~i~ 247 (602)
T PRK09548 216 SVDDLKLPKWLHIFHDSIVATAIVMTVFFGII 247 (602)
T ss_pred CHHHhcCCcchhHhhhhHHHHHHHHHHHHHHH
Confidence 45788888889999999999988877776553
No 27
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=21.95 E-value=76 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=22.6
Q ss_pred hhhhhhhhhhhhhheeeceeeeehhhHHHHHH
Q psy14100 55 DNVVGTVVVVSAALWIPASCLISYIDRARLRA 86 (137)
Q Consensus 55 dNIVGaVlIvSlLlWIP~SclI~~vD~Kr~k~ 86 (137)
=|.+-.++++..++|-| +...+|.++.+-
T Consensus 13 i~flil~~ll~~~l~~p---i~~~l~~R~~~I 41 (140)
T PRK07353 13 VQFVLLTFILNALFYKP---VGKVVEEREDYI 41 (140)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 38888999999999999 567777665543
No 28
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.36 E-value=77 Score=21.21 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=16.0
Q ss_pred hHHHHHHHHhccCccccC-CCeEeec
Q psy14100 5 LLWTLLIFYQMEHPVYKA-SGTCEKT 29 (137)
Q Consensus 5 ~~~~~~~~~~~Ch~G~C~-~G~Cek~ 29 (137)
+|| ++.+-++||+|-== .|.|.-+
T Consensus 18 ~ly-l~ald~~CDQg~~F~~GIC~it 42 (47)
T PRK10299 18 LLW-AQVFNMMCDQDVQFFSGICAIN 42 (47)
T ss_pred HHH-HHHHHHHhcCCccceeeeeeee
Confidence 344 45678999999222 7888653
No 29
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.22 E-value=74 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=26.0
Q ss_pred cChHHHHHHHhhhhhhhhhhhhhhheeeceeeeehhhHHHHHH
Q psy14100 44 ININKVLLFLRDNVVGTVVVVSAALWIPASCLISYIDRARLRA 86 (137)
Q Consensus 44 isin~v~~fl~dNIVGaVlIvSlLlWIP~SclI~~vD~Kr~k~ 86 (137)
|++|. ..+.-|++..++++.+|.|+-.--+...+|+|+.+-
T Consensus 20 f~~n~--~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I 60 (184)
T CHL00019 20 FGFNT--DILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTI 60 (184)
T ss_pred cCCcc--hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 45543 455557888888887777755444667777665543
No 30
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=21.12 E-value=15 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.2
Q ss_pred hhhhhhheeeceeeeehhhHHHH
Q psy14100 62 VVVSAALWIPASCLISYIDRARL 84 (137)
Q Consensus 62 lIvSlLlWIP~SclI~~vD~Kr~ 84 (137)
=|+-+++|+|++++-...||+|+
T Consensus 68 Gi~~AI~fFPiGilcc~~~r~~r 90 (98)
T PF10164_consen 68 GILCAIFFFPIGILCCLAMRERR 90 (98)
T ss_pred HHHHHHHHHhhHHHHhhhcCccc
Confidence 35668999999999888886654
No 31
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=20.97 E-value=54 Score=25.39 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=29.2
Q ss_pred HHHHhccCccccCCCeEeecchhHHHHhhhhhcccChH
Q psy14100 10 LIFYQMEHPVYKASGTCEKTIQDVVERFWDIIEEININ 47 (137)
Q Consensus 10 ~~~~~~Ch~G~C~~G~Cek~vqDvveRFwDiiE~isin 47 (137)
+-=||.|++-+|+.--|-+. .++|.|-|.+|++|...
T Consensus 17 l~~r~~~Ygd~s~~~DyqeA-ln~V~e~~eaFd~LPa~ 53 (114)
T PF09675_consen 17 LEQRQPEYGDCSSPFDYQEA-LNMVAEANEAFDELPAH 53 (114)
T ss_pred HHhcCCcccccCCHHhHHHH-HHHHHHHHHHHHHchHH
Confidence 34578898888877777666 89999999999998543
No 32
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=20.20 E-value=32 Score=24.17 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.7
Q ss_pred HHHHHhhhhhhhhhhh
Q psy14100 49 VLLFLRDNVVGTVVVV 64 (137)
Q Consensus 49 v~~fl~dNIVGaVlIv 64 (137)
+.+.++-|||+++++.
T Consensus 13 l~~~l~~~i~~a~~ls 28 (73)
T PF02937_consen 13 LAKRLKRHIVVAFVLS 28 (73)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678889999987654
No 33
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=20.19 E-value=49 Score=21.72 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=24.6
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVVG 59 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIVG 59 (137)
|.++++++-+-++.-+++.+..+..+|.+.
T Consensus 1 V~~~~~~~~~a~~~~D~~~~~~~~~~d~~~ 30 (121)
T PF13474_consen 1 VEALLEEWIEAFERGDIDALLSLFSDDFVF 30 (121)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhCCCEEE
Confidence 457889999999999999999999888653
No 34
>PF15345 TMEM51: Transmembrane protein 51
Probab=20.08 E-value=16 Score=31.02 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhheeeceeeeehhhHHHHHHHHh
Q psy14100 57 VVGTVVVVSAALWIPASCLISYIDRARLRAAYN 89 (137)
Q Consensus 57 IVGaVlIvSlLlWIP~SclI~~vD~Kr~k~~ek 89 (137)
.|..|+|-+-+.-.=+|+|+...||||+++.++
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344555544444444899999999999999888
Done!