Query psy14100
Match_columns 137
No_of_seqs 35 out of 37
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 19:34:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 88.5 0.12 4E-06 35.6 0.6 35 57-91 17-51 (79)
2 3ewt_E Tumor necrosis factor r 72.1 1.5 5.1E-05 24.9 1.2 21 36-56 3-23 (25)
3 3pt3_A E3 ubiquitin-protein li 60.4 5.1 0.00018 28.9 2.4 29 31-60 27-55 (118)
4 3en8_A Uncharacterized NTF-2 l 49.0 2.6 8.9E-05 28.8 -0.7 30 29-58 6-35 (128)
5 3ff2_A Uncharacterized cystati 44.6 4.9 0.00017 26.1 0.1 30 29-58 3-32 (117)
6 3f40_A Uncharacterized NTF2-li 40.9 7.6 0.00026 26.1 0.6 30 29-58 7-36 (114)
7 3i0y_A Putative polyketide cyc 38.9 7.5 0.00026 25.5 0.3 29 30-58 10-38 (140)
8 1nww_A Limonene-1,2-epoxide hy 37.4 9.4 0.00032 25.4 0.6 31 28-58 22-52 (149)
9 2kv9_B Integrin beta-3; platel 36.1 7.9 0.00027 26.7 0.1 32 59-93 18-52 (75)
10 3fh1_A Uncharacterized NTF2-li 35.2 12 0.0004 24.8 0.8 29 30-58 19-47 (129)
11 4h3u_A Hypothetical protein; s 34.6 8.9 0.0003 26.4 0.2 30 29-58 26-55 (158)
12 1oh0_A Steroid delta-isomerase 33.0 13 0.00046 23.7 0.8 30 29-58 8-37 (131)
13 3ec9_A Uncharacterized NTF2-li 33.0 9.5 0.00032 25.2 0.1 30 29-58 13-42 (140)
14 3fgy_A Uncharacterized NTF2-li 32.6 9.5 0.00032 24.9 0.0 30 29-58 6-35 (135)
15 1z1s_A Hypothetical protein PA 31.5 13 0.00045 25.8 0.6 30 29-58 24-53 (163)
16 1uqv_A STE50 protein; SAM, ste 31.5 30 0.001 24.4 2.5 34 29-63 13-48 (85)
17 2bng_A MB2760; epoxide hydrola 31.5 15 0.0005 24.8 0.8 29 30-58 17-45 (149)
18 1s5a_A Hypothetical protein YE 30.2 11 0.00037 24.9 0.0 30 29-58 11-40 (150)
19 3f7x_A Putative polyketide cyc 29.7 13 0.00046 25.7 0.4 30 29-58 21-50 (151)
20 2k54_A Protein ATU0742; protei 28.3 14 0.00048 23.9 0.3 30 29-58 4-33 (123)
21 1tuh_A BAL32A, hypothetical pr 28.1 18 0.00062 24.5 0.8 29 30-58 31-59 (156)
22 3f14_A Uncharacterized NTF2-li 28.1 8.6 0.00029 25.2 -0.8 28 31-58 3-30 (112)
23 3ebt_A Uncharacterized NTF2-li 27.4 13 0.00044 24.0 -0.0 30 29-58 4-33 (132)
24 1m45_B IQ2, IQ2 motif from MYO 27.1 44 0.0015 19.0 2.2 17 46-62 2-18 (26)
25 2ebk_A RWD domain-containing p 26.6 23 0.00078 24.3 1.2 22 48-70 93-114 (128)
26 3g8z_A Protein of unknown func 26.3 21 0.00073 24.4 1.0 29 30-58 22-50 (148)
27 3dm8_A Uncharacterized protein 26.2 17 0.00058 24.7 0.4 31 28-58 4-34 (143)
28 3f9s_A Putative polyketide cyc 26.2 22 0.00074 23.7 1.0 30 29-58 7-37 (146)
29 1ohp_A Steroid delta-isomerase 26.2 13 0.00044 23.1 -0.2 30 29-58 6-35 (125)
30 2e3e_A Defensin, mutant DEF-BB 26.1 19 0.00066 22.7 0.6 12 17-28 30-41 (45)
31 1c4z_A E6AP, ubiquitin-protein 25.9 38 0.0013 27.9 2.6 29 31-60 267-295 (358)
32 3d9r_A Ketosteroid isomerase-l 24.1 16 0.00054 23.4 -0.1 31 28-58 11-41 (135)
33 1nd7_A WW domain-containing pr 23.7 41 0.0014 27.8 2.4 29 31-60 282-310 (374)
34 1xdt_R Hbegf, heparin-binding 23.4 27 0.00092 24.0 1.0 17 12-28 36-55 (79)
35 3dmc_A NTF2-like protein; stru 23.1 14 0.00048 25.3 -0.5 30 29-58 13-42 (134)
36 2oni_A E3 ubiquitin-protein li 22.9 43 0.0015 28.0 2.4 29 31-60 302-330 (392)
37 2e3g_A Defensin, mutant DEF-DA 22.8 26 0.00087 21.6 0.7 11 17-27 26-37 (40)
38 1zvd_A SMAD ubiquitination reg 22.3 45 0.0015 27.7 2.3 29 31-60 282-310 (380)
39 2ln4_A Coprisin; antimicrobial 22.0 23 0.00077 22.4 0.4 12 17-28 30-41 (44)
40 3f8h_A Putative polyketide cyc 21.6 18 0.0006 25.1 -0.2 31 28-58 18-48 (150)
41 1sz9_A PCF11 protein; RNA poly 21.1 94 0.0032 22.4 3.6 37 29-65 4-46 (144)
42 3h3h_A Uncharacterized snoal-l 21.1 21 0.0007 23.3 0.0 30 29-58 9-38 (122)
43 3k0z_A Putative polyketide cyc 20.2 30 0.001 24.1 0.7 28 31-58 37-64 (159)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=88.47 E-value=0.12 Score=35.59 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhheeeceeeeehhhHHHHHHHHhhh
Q psy14100 57 VVGTVVVVSAALWIPASCLISYIDRARLRAAYNEH 91 (137)
Q Consensus 57 IVGaVlIvSlLlWIP~SclI~~vD~Kr~k~~ek~~ 91 (137)
+||+++++.+++++=.-++++..|||+-++-|++.
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKEFAKFEEER 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888999999999888877773
No 2
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=72.09 E-value=1.5 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.7
Q ss_pred HhhhhhcccChHHHHHHHhhh
Q psy14100 36 RFWDIIEEININKVLLFLRDN 56 (137)
Q Consensus 36 RFwDiiE~isin~v~~fl~dN 56 (137)
.+++|-|...++++.+|+|.|
T Consensus 3 yIp~IAe~M~~~~Vk~fvR~~ 23 (25)
T 3ewt_E 3 YITTIAGVMTLSQVKGFVRKN 23 (26)
T ss_pred chhHHHHHHhHHHHHHHHHHc
Confidence 367888999999999999987
No 3
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=60.44 E-value=5.1 Score=28.90 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=24.2
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
+.+|.-||++++++|.++-.+||+ =+.|+
T Consensus 27 ~~~i~wFW~vv~~~~~eer~~fL~-FvTGs 55 (118)
T 3pt3_A 27 LQFKRWFWSIVEKMSMTERQDLVY-FWTSS 55 (118)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHH-HHHSC
T ss_pred chHHHHHHHHHHHCCHHHHHHHHh-HhcCC
Confidence 368999999999999999888886 45554
No 4
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=49.01 E-value=2.6 Score=28.83 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=27.5
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..++++|||+.++.=+.+.+.+++.++.|
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~v 35 (128)
T 3en8_A 6 KIREALNAHWQASAAGDFDAEHDIYDDDAI 35 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEE
Confidence 357899999999999999999999999987
No 5
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=44.63 E-value=4.9 Score=26.13 Aligned_cols=30 Identities=3% Similarity=0.206 Sum_probs=26.8
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..++++++++.+..=+++.+.+++.++.+
T Consensus 3 ~~~~~v~~~~~a~n~~D~~~~~~~~a~D~v 32 (117)
T 3ff2_A 3 SNLETAKAMIAAYNAQDVDTYVSYMTDDAC 32 (117)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHHHcccCHHHHHHhcCCcEE
Confidence 347899999999999999999999999865
No 6
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=40.86 E-value=7.6 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=27.4
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.+..=+.+.+.++|.+++|
T Consensus 7 ~~~~~v~~f~~A~~~gD~~~l~~lla~Dvv 36 (114)
T 3f40_A 7 TTRDLVLEFIHALNTENFPAAKKRLNENFT 36 (114)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHhcCCCeE
Confidence 446899999999999999999999999975
No 7
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=38.86 E-value=7.5 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.460 Sum_probs=26.3
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..+++++|++.++.=+++.+.+++.+++|
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~ 38 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVA 38 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEE
Confidence 46899999999999999999999999963
No 8
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=37.42 E-value=9.4 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=27.7
Q ss_pred ecchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 28 KTIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 28 k~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+..+++++|++.++.=+++.+.+++.++.|
T Consensus 22 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~ 52 (149)
T 1nww_A 22 TPDEKIVLEFMDALTSNDAAKLIEYFAEDTM 52 (149)
T ss_dssp SHHHHHHHHHHHHGGGCCHHHHHTTBCSSCE
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHhCCCEE
Confidence 3457899999999999999999999999975
No 9
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=36.05 E-value=7.9 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.5
Q ss_pred hhhhhhhhhheeeceeeeehhhHHHHHHHHhh---hhh
Q psy14100 59 GTVVVVSAALWIPASCLISYIDRARLRAAYNE---HRK 93 (137)
Q Consensus 59 GaVlIvSlLlWIP~SclI~~vD~Kr~k~~ek~---~~w 93 (137)
|+-+++.|++|- .|+...|+|+-++-|++ .+|
T Consensus 18 ~~~~~~~LliwK---ll~~i~DrREyaKFEkEr~~akw 52 (75)
T 2kv9_B 18 GSHMSPECLIWK---LLITIHDRKEFAKFEEERARAKW 52 (75)
T ss_dssp ----CHHHHHHH---HHHHHHHCHHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHhcc
Confidence 778899999993 66888999877766665 556
No 10
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=35.20 E-value=12 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=26.5
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..+++++|.+.++.=+++.+.+++.+++|
T Consensus 19 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~v 47 (129)
T 3fh1_A 19 TAEIMRRFNDVFQLHDPAALPELIAEECV 47 (129)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCCEE
Confidence 35799999999999999999999999976
No 11
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=34.56 E-value=8.9 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=27.8
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..|+|++|.+.+..-+++.+.+++.++.|
T Consensus 26 t~~eiv~~y~~A~n~~D~d~~~~l~a~D~v 55 (158)
T 4h3u_A 26 TTPEIVTAWAAAWTGTNPNALGTLFAADGT 55 (158)
T ss_dssp CCCHHHHHHHHHHHSSCHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhcccce
Confidence 457999999999999999999999999987
No 12
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=33.00 E-value=13 Score=23.72 Aligned_cols=30 Identities=13% Similarity=0.447 Sum_probs=26.9
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
...+++++|++.++.=+.+.+.+++.++.|
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~ 37 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDAT 37 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEE
Confidence 457899999999999999999999999864
No 13
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=33.00 E-value=9.5 Score=25.23 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=27.2
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.++.=+++.+.+++.+++|
T Consensus 13 ~~~~~v~~~~~a~~~gD~~~~~~l~a~D~~ 42 (140)
T 3ec9_A 13 TPYQIVADHYAASDRHDPAAMMADIAPAIE 42 (140)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCeE
Confidence 446899999999999999999999999986
No 14
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=32.57 E-value=9.5 Score=24.88 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=26.9
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.+..=+++.+.+++.+++|
T Consensus 6 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~ 35 (135)
T 3fgy_A 6 ENVQIVKDFFAAMGRGDKKGLLAVSAEDIE 35 (135)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCCeE
Confidence 446899999999999999999999999975
No 15
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=31.55 E-value=13 Score=25.78 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=27.3
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.++.=+++.+.+++.+++|
T Consensus 24 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v 53 (163)
T 1z1s_A 24 NAKEILVHSLRLLENGDARGWCDLFHPEGV 53 (163)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHCCCCEE
Confidence 457899999999999999999999999975
No 16
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=31.50 E-value=30 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=20.5
Q ss_pred cchhHHHHhhhh--hcccChHHHHHHHhhhhhhhhhh
Q psy14100 29 TIQDVVERFWDI--IEEININKVLLFLRDNVVGTVVV 63 (137)
Q Consensus 29 ~vqDvveRFwDi--iE~isin~v~~fl~dNIVGaVlI 63 (137)
++++|++=.-.. +++.++- +.+|..+||.|+|+.
T Consensus 13 t~~~V~~W~~~~lg~~d~d~~-~~~f~~ndItG~vL~ 48 (85)
T 1uqv_A 13 SVDDVITWCISTLEVEETDPL-CQRLRENDIVGDLLP 48 (85)
T ss_dssp CHHHHHHHHHHHHSSCTTSTH-HHHHHHSCCCGGGHH
T ss_pred CHHHHHHHHHHHhCCCCccHH-HHHHHHcCCchhhHH
Confidence 345665433222 3343322 677999999999985
No 17
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=31.50 E-value=15 Score=24.82 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=26.2
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..+++++|++.++.=+++.+.+++.+++|
T Consensus 17 ~~~~v~~f~~a~~~gD~~~l~~l~a~D~v 45 (149)
T 2bng_A 17 AIRAVEAFLNALQNEDFDTVDAALGDDLV 45 (149)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCEE
Confidence 35789999999999999999999999965
No 18
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=30.25 E-value=11 Score=24.86 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.9
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.++.=+++.+.+++.++.+
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~ 40 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENAV 40 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCEE
Confidence 457899999999999999999999999965
No 19
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=29.75 E-value=13 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=27.4
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.++.=+++.+.+++.++.|
T Consensus 21 ~~~~lv~~~~~a~~~~D~~~l~~l~a~D~v 50 (151)
T 3f7x_A 21 TATELVNAYYAAFNAGDMPAFLALLSEDVI 50 (151)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEE
Confidence 457899999999999999999999999975
No 20
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=28.34 E-value=14 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=26.7
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.+..=+++.+..++.++.+
T Consensus 4 ~~~~~v~~~~~a~n~~D~~~~~~~~a~D~~ 33 (123)
T 2k54_A 4 EIELPVQKQLEAYNARDIDAFMAWWADDCQ 33 (123)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCHHHHHhhcCCceE
Confidence 357899999999999999999999999864
No 21
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=28.09 E-value=18 Score=24.54 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=26.1
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..+++++|++.++.=+++.+.+++.++++
T Consensus 31 ~~~~v~~~~~a~~~gD~~~l~~l~a~D~~ 59 (156)
T 1tuh_A 31 NAETVRRGYAAFNSGDMKTLTELFDENAS 59 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEE
Confidence 35789999999999999999999999965
No 22
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=28.06 E-value=8.6 Score=25.16 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=25.4
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+.+.+|++.+..=+.+.+.+++.|+++
T Consensus 3 ~~~v~~~~~a~~~gD~~~~~~~ladDv~ 30 (112)
T 3f14_A 3 ETTHYSIAQHFSSGDFPAVYACFNDIIE 30 (112)
T ss_dssp HHHHHHHHHHHHTTCGGGTGGGEEEEEE
T ss_pred hHHHHHHHHHHHcCCHHHHHHhcCCceE
Confidence 4678999999999999999999999975
No 23
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=27.44 E-value=13 Score=24.03 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=26.7
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+..+++++|++.++.=+++.+.+++.++++
T Consensus 4 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~ 33 (132)
T 3ebt_A 4 NNMQTVRESYEAFHRRDLPGVLAALAPDVR 33 (132)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred hHHHHHHHHHHHHhccCHHHHHHhcCCCEE
Confidence 346899999999999999999999999975
No 24
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=27.09 E-value=44 Score=18.98 Aligned_cols=17 Identities=24% Similarity=0.702 Sum_probs=13.4
Q ss_pred hHHHHHHHhhhhhhhhh
Q psy14100 46 INKVLLFLRDNVVGTVV 62 (137)
Q Consensus 46 in~v~~fl~dNIVGaVl 62 (137)
|..-.++|.+||-|.++
T Consensus 2 isqaikylqnnikgfii 18 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFII 18 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEEE
Confidence 45667899999999865
No 25
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.62 E-value=23 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhhee
Q psy14100 48 KVLLFLRDNVVGTVVVVSAALWI 70 (137)
Q Consensus 48 ~v~~fl~dNIVGaVlIvSlLlWI 70 (137)
.+.+.+++|. |.+||++++-|+
T Consensus 93 ~L~~~~~e~~-G~~mif~lv~~l 114 (128)
T 2ebk_A 93 KLLEQAESLL-SEPMVHELVLWI 114 (128)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHH
T ss_pred HHHHHHHHhC-CcchHHHHHHHH
Confidence 4555666786 999999999885
No 26
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=26.28 E-value=21 Score=24.35 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=26.5
Q ss_pred chhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 30 IQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 30 vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
-.+++++|++.+..=+++.+.+++.+++|
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v 50 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVI 50 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEE
Confidence 36899999999999999999999999975
No 27
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=26.22 E-value=17 Score=24.65 Aligned_cols=31 Identities=6% Similarity=0.202 Sum_probs=27.6
Q ss_pred ecchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 28 KTIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 28 k~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+...++++|.+.+..=+++.+.+++.+++|
T Consensus 4 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~Dv~ 34 (143)
T 3dm8_A 4 HSLWRFSRALHRALNDRQTEELATIIDDNID 34 (143)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHEEEEEE
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHhcCCCeE
Confidence 3456889999999999999999999999975
No 28
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=26.18 E-value=22 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=26.1
Q ss_pred cchhHHHHhhh-hhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWD-IIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwD-iiE~isin~v~~fl~dNIV 58 (137)
+..+++.+|++ .+..=+++.+.+++.+++|
T Consensus 7 ~~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~ 37 (146)
T 3f9s_A 7 KAKEILTQFTREVWSEGNIEASDKYIAPKYT 37 (146)
T ss_dssp THHHHHHHHHHHHTTTCCGGGHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCee
Confidence 45689999996 8888899999999999976
No 29
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=26.16 E-value=13 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.400 Sum_probs=26.5
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+.+++++|++.+..=+++.+.+++.++.|
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~ 35 (125)
T 1ohp_A 6 HMTAVVQRYVAALNAGDLDGIVALFADDAT 35 (125)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCeE
Confidence 457899999999999999999999998864
No 30
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X
Probab=26.14 E-value=19 Score=22.70 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.7
Q ss_pred CccccCCCeEee
Q psy14100 17 HPVYKASGTCEK 28 (137)
Q Consensus 17 h~G~C~~G~Cek 28 (137)
.+|||+.++|.=
T Consensus 30 ~GGyC~~~vCvC 41 (45)
T 2e3e_A 30 RGGYCKNKICHC 41 (45)
T ss_dssp CCEEEETTEEEE
T ss_pred cCccCCCCEEEE
Confidence 579999889863
No 31
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=25.92 E-value=38 Score=27.89 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
..+|..||++++++|.++-.+||+ =+.|+
T Consensus 267 ~~~i~~FW~vv~~~~~eer~~fL~-FvTGs 295 (358)
T 1c4z_A 267 SVLIREFWEIVHSFTDEQKRLFLQ-FTTGT 295 (358)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH-HHSSS
T ss_pred cchhhhHHHHHHhCCHHHHHHHHH-HHcCC
Confidence 568899999999999999888887 34443
No 32
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=24.06 E-value=16 Score=23.41 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred ecchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 28 KTIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 28 k~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
..+.+++++|.+.+..=+.+.+...+.++.|
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v 41 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGV 41 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEE
Confidence 3578899999999999999999999999864
No 33
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=23.73 E-value=41 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=23.4
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
...|..||++++++|.++-.+||+ =+.|+
T Consensus 282 ~~~i~~FW~vv~~~~~eer~~fL~-FvTGs 310 (374)
T 1nd7_A 282 SKQIIWFWQFVKETDNEVRMRLLQ-FVTGT 310 (374)
T ss_dssp SHHHHHHHHHHHHSCHHHHHHHHH-HHHSC
T ss_pred CcceeeHHHHHHhcCHHHHHHHHH-HHhCC
Confidence 567889999999999998888887 34443
No 34
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=23.35 E-value=27 Score=24.01 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=12.5
Q ss_pred HHhccC---ccccCCCeEee
Q psy14100 12 FYQMEH---PVYKASGTCEK 28 (137)
Q Consensus 12 ~~~~Ch---~G~C~~G~Cek 28 (137)
..++|. .+||.+|+|.-
T Consensus 36 ~~~pC~~~~~~yClnG~C~~ 55 (79)
T 1xdt_R 36 KRDPCLRKYKDFCIHGECKY 55 (79)
T ss_dssp ---CTTTTTTTCCSSEEECC
T ss_pred cCCCCCccccCcCCCCEeee
Confidence 467898 89999999964
No 35
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=23.06 E-value=14 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=27.1
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+++++++|++.+..=+.+.+.+.+.+++|
T Consensus 13 ~~~~~~~~f~~A~~~gD~~~l~~lla~D~v 42 (134)
T 3dmc_A 13 VAHQGFEFFTQGLATGEWQKFLDMLTEDFT 42 (134)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCEE
Confidence 457899999999999999999999999975
No 36
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=22.88 E-value=43 Score=27.99 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
..+|..||++++++|.++-.+||+ =+.|+
T Consensus 302 ~~~i~~FW~vv~~~s~eer~~fL~-FvTGs 330 (392)
T 2oni_A 302 HPVIQWFWKAVLLMDAEKRIRLLQ-FVTGT 330 (392)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHH-HHHSC
T ss_pred CchheeHHHHHHhCCHHHHHHHHH-HHhCC
Confidence 568899999999999999888887 34443
No 37
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2nz3_A
Probab=22.80 E-value=26 Score=21.58 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=9.2
Q ss_pred CccccC-CCeEe
Q psy14100 17 HPVYKA-SGTCE 27 (137)
Q Consensus 17 h~G~C~-~G~Ce 27 (137)
.+|||+ +++|.
T Consensus 26 ~GGyC~~~~vCv 37 (40)
T 2e3g_A 26 RGGYCNSKAVCV 37 (40)
T ss_dssp CEEEECTTSCEE
T ss_pred CccccCCCCEEe
Confidence 579999 68986
No 38
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=22.27 E-value=45 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVVGT 60 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIVGa 60 (137)
..+|..||++++++|.++-.+||+ =+.|+
T Consensus 282 ~~~i~~FW~vv~~~s~eer~~fL~-FvTGs 310 (380)
T 1zvd_A 282 SNIVKWFWKAVEFFDEERRARLLQ-FVTGS 310 (380)
T ss_dssp SHHHHHHHHHHHHSCHHHHHHHHH-HHHSC
T ss_pred cchhhhHHHHHHhCCHHHHHHHHH-HHhCC
Confidence 567899999999999999888887 34443
No 39
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=22.04 E-value=23 Score=22.38 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=9.9
Q ss_pred CccccCCCeEee
Q psy14100 17 HPVYKASGTCEK 28 (137)
Q Consensus 17 h~G~C~~G~Cek 28 (137)
.+|||+.|.|.=
T Consensus 30 ~GGyC~~~VCvC 41 (44)
T 2ln4_A 30 KGGSCQNGVCVC 41 (44)
T ss_dssp SEEEEETTEEEE
T ss_pred CCcccCCCEEEe
Confidence 579999999964
No 40
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=21.64 E-value=18 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=28.2
Q ss_pred ecchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 28 KTIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 28 k~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+..++++||++.++.=+++.+.+++.+++|
T Consensus 18 ~~~~~~v~~~~~a~n~~D~~~l~~l~a~D~v 48 (150)
T 3f8h_A 18 QGMNDTIARYFDAFNAGDTDGMLACLSEDVA 48 (150)
T ss_dssp ECCCCHHHHHHHHHHHTCHHHHHTTEEEEEE
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHcCCCeE
Confidence 4557899999999999999999999999986
No 41
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.08 E-value=94 Score=22.42 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=30.4
Q ss_pred cchhHHHHhhhhhcccC------hHHHHHHHhhhhhhhhhhhh
Q psy14100 29 TIQDVVERFWDIIEEIN------INKVLLFLRDNVVGTVVVVS 65 (137)
Q Consensus 29 ~vqDvveRFwDiiE~is------in~v~~fl~dNIVGaVlIvS 65 (137)
...|+++.|-+.+++++ |+++-.|..+|+--+=-|+.
T Consensus 4 ~~~~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~ 46 (144)
T 1sz9_A 4 DTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVD 46 (144)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998 89999999999866555544
No 42
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=21.06 E-value=21 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=26.8
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 29 TIQDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 29 ~vqDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
+.+.+++++.+.++.=+++.+..++.++.|
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v 38 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGFE 38 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCEE
Confidence 346899999999999999999999999876
No 43
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=20.24 E-value=30 Score=24.05 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=25.7
Q ss_pred hhHHHHhhhhhcccChHHHHHHHhhhhh
Q psy14100 31 QDVVERFWDIIEEININKVLLFLRDNVV 58 (137)
Q Consensus 31 qDvveRFwDiiE~isin~v~~fl~dNIV 58 (137)
.+++.+|++.+..=+++.+.+++.++.+
T Consensus 37 ~~~v~~~~~a~~~~d~~~l~~~~a~D~v 64 (159)
T 3k0z_A 37 VHAAQRFYAFWDTGKEELIPQTVTENFF 64 (159)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHHcCCCeE
Confidence 5789999999999999999999999976
Done!