RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14100
(137 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.003
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 37/136 (27%)
Query: 14 QMEH----------PVYKASGTCEKTIQDVV------ERFWDIIEEIN-INKV-LLF--L 53
+ ++ + + C K +QD+ E II + ++ LF L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 54 RDNVVGTV-VVVSAAL-----WIPASCLISYIDRARLRAAYNEHRKRNAHLEPMFNPEAL 107
V V L ++ + + + Y E R + ++N
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR------DRLYN---- 121
Query: 108 RPRRIIKTRVTRQMPV 123
+ K V+R P
Sbjct: 122 DNQVFAKYNVSRLQPY 137
Score = 29.8 bits (66), Expect = 0.33
Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 43/157 (27%)
Query: 3 LVLLWTLLIFYQMEHPVYKA----SGTCEKTIQDVVERFWDIIEEININKVLLFLRDNVV 58
L +L LL YQ++ P + + S + I + +++ LL L +
Sbjct: 199 LEMLQKLL--YQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--- 252
Query: 59 GTVVVVSAALWIP--ASC--LISYIDRA---RLRAAYNEHRKRNAHLEPMFNPEALR--- 108
V +A W SC L++ + L AA H + H + E
Sbjct: 253 ----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 109 ----------PRRIIKTRVTRQMPVSMSSHQQMMGQM 135
PR ++ T P +S ++ +
Sbjct: 309 KYLDCRPQDLPREVLTT-----NPRRLS----IIAES 336
Score = 26.0 bits (56), Expect = 6.6
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 24/95 (25%)
Query: 3 LVLLWTLLIFYQMEHPVYKASGTCEKTIQDVVERFWDIIEEININKVLLFLRDNVVGTVV 62
L L+W +I + VV + L+ + T+
Sbjct: 392 LSLIWFDVIKSDVM---------------VVVNKL--------HKYSLVE-KQPKESTIS 427
Query: 63 VVSAALWIPASCLISYIDRARLRAAYNEHRKRNAH 97
+ S L + Y + YN + ++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.003
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 28/91 (30%)
Query: 22 ASGTCEKTIQDVVERFWD----IIEEININKVLLFLRDNVVGTVVVVS---AALWIPASC 74
A+ ++ +Q VVER ++E +N NV V + AL +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVN---------YNVENQQYVAAGDLRALDTVTNV 1868
Query: 75 L----ISYIDRARLRAAYNEHRKRNAHLEPM 101
L + ID L+ + LE +
Sbjct: 1869 LNFIKLQKIDIIELQKSL--------SLEEV 1891
Score = 26.6 bits (58), Expect = 3.6
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 24/74 (32%)
Query: 18 PVY---------KASGTCEKTIQDVVER---FWDIIEEININKVLLFLR----------- 54
PVY SG+ + I D + R W+ + +L F
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 55 DNVVGT-VVVVSAA 67
N GT V V+ A
Sbjct: 518 RNKDGTGVRVIVAG 531
Score = 26.2 bits (57), Expect = 4.3
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 17/50 (34%)
Query: 70 IPASCLISYIDRARLRAAYNEHRKRNAHLE-PMFN----------PEALR 108
+ + Y+++ N H +E + N P++L
Sbjct: 344 LTQEQVQDYVNKT------NSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like
protein of unknown function, structu genomics; HET: MSE
PG4; 1.85A {Burkholderia xenovorans LB400} SCOP:
d.17.4.20
Length = 128
Score = 26.2 bits (57), Expect = 2.7
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 24 GTCEKTIQDVVERFWDIIEEININKVLLFLRDNVV 58
G E+ I++ + W + + D+ +
Sbjct: 1 GMREEKIREALNAHWQASAAGDFDAEHDIYDDDAI 35
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of
unknown function; HET: MSE; 1.90A {Burkholderia
pseudomallei K96243}
Length = 194
Score = 26.2 bits (57), Expect = 3.4
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 11 IFYQMEHPVYKASGTCEKTIQDVVERFWDIIEEININKVLLFLRDNVVGTVVVVSAAL-W 69
I YQ+ ++ E IQ ++ + ++ + + K L + A L
Sbjct: 51 IRYQIHEMLHIEKIFDEDGIQAELDAYLPLVPDGSNLKATLQIEYENETQRRAALARLVG 110
Query: 70 IPASCLISYIDRARLRAAYNEHRKRNA 96
I + D A + A +E +R+
Sbjct: 111 IEDRVFLRVDDEAPVYAIADEDLERDT 137
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 26.0 bits (58), Expect = 4.6
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 29 TIQDVVERFWDIIEEININKVLLFLRDNVVGTVVVVS--AALWIPASCLISYIDRARLRA 86
DV +R + ++ I + + TV++V+ L L++ L
Sbjct: 121 RFCDVQQRALEAVQSI--------VDRHEGETVLIVTHGVVL----KTLMAAFKDTPLDH 168
Query: 87 AYNEHRKRNAHL 98
++ +
Sbjct: 169 LWSPPYMYGTSV 180
>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase; ssgcid; 1.80A {Burkholderia
pseudomallei}
Length = 316
Score = 25.6 bits (55), Expect = 6.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 28 KTIQDVVERFWDIIEEININKVLLFLRDNVVGTVVVVSAALWIPASCLISYIDRARLRAA 87
+ +Q +++ W+ E++ +R+ V I +DR LR A
Sbjct: 44 QQLQQIIDNAWENRAELSPKAASAEIREAVAHA---------------IEQLDRGALRVA 88
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 25.8 bits (57), Expect = 6.1
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 71 PASCLISYIDRARLRAAYNEHRKR----NAHLEPMFNPEAL 107
A S + R R +++E+ +H+E +F+PE
Sbjct: 178 DAETKASAVARERDGLSWDEYSVLLQRYFSHVEFLFSPELF 218
>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase;
2,3,4,5-tetrahydropyridine-2-carboxylate
N-succinyltransfera acyltransferase; 1.80A {Yersinia
pestis} PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A
1tdt_A
Length = 276
Score = 25.1 bits (54), Expect = 9.5
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 15/60 (25%)
Query: 28 KTIQDVVERFWDIIEEININKVLLFLRDNVVGTVVVVSAALWIPASCLISYIDRARLRAA 87
+ +Q+V+E ++ +I V R+ + I +D LR A
Sbjct: 4 QQLQNVIETAFERRADITPANVDTVTREAITHV---------------IDLLDTGALRVA 48
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 25.2 bits (54), Expect = 9.6
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 18/61 (29%)
Query: 76 ISYIDRARLRAAYNEHRKRNAHLEPMFNPEALRPRRIIKTRVTRQMPVS-MSSHQQMMGQ 134
+S+ DRA +R Y R L+ M + M +S +SS Q+ +
Sbjct: 202 VSF-DRAHIREQYLIQGSRMRFLDTM----------------SMHMAISGLSSFQRSLWI 244
Query: 135 M 135
Sbjct: 245 A 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.413
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,006
Number of extensions: 125038
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 21
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.4 bits)