RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14100
         (137 letters)



>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261
          {Anabaena variabilis [TaxId: 1172]}
          Length = 133

 Score = 23.6 bits (50), Expect = 8.3
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 28 KTIQDVVERFWDIIEEININKVLLFLRDNVVGTV 61
          K      E F   +      K L  L ++     
Sbjct: 11 KVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWF 44


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 23.8 bits (51), Expect = 8.7
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 75  LISYIDRARLRAAYNEHRKRNAHLE 99
            I Y DR R R      +   AH +
Sbjct: 179 SIIYPDRIRRRPPGTTSKGLGAHTD 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 526,257
Number of extensions: 23336
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 9
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)