BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14103
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 KRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEI-THTLEIL 76
KR+ Y+LQ+++L+ D GSY+ QI T ++ ++TL IL
Sbjct: 62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL 105
>pdb|2PKD|A Chain A, Crystal Structure Of Cd84: Insite Into Slam Family
Function
pdb|2PKD|B Chain B, Crystal Structure Of Cd84: Insite Into Slam Family
Function
pdb|2PKD|C Chain C, Crystal Structure Of Cd84: Insite Into Slam Family
Function
pdb|2PKD|D Chain D, Crystal Structure Of Cd84: Insite Into Slam Family
Function
pdb|2PKD|E Chain E, Crystal Structure Of Cd84: Insite Into Slam Family
Function
pdb|2PKD|F Chain F, Crystal Structure Of Cd84: Insite Into Slam Family
Function
Length = 111
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 8 PDKNYVLAW--KRGIAILTAGSTKVTP---------DKRIQ-LVDGYNLQITDLQTTDAG 55
P + ++AW K +A +T G ++ P +RI L YNL I+DL+ DAG
Sbjct: 26 PRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAG 85
Query: 56 SYQCQIGT 63
Y+ I T
Sbjct: 86 DYKADINT 93
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 6 GLPDKNYVLAW-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
G+P+ L W K G+ + + R+++VDG NL I++++ D G+Y+C
Sbjct: 135 GIPEP--TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 6 GLPDKNYVLAW-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
G+P+ L W K G+ + + R+++VDG NL I++++ D G+Y+C
Sbjct: 135 GIPEP--TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
+SG P ++ W RG ++ S K+ L+ G NL I+++ D+G+Y C + T
Sbjct: 245 VSGYPPPSFT--WLRGEEVIQLRS------KKYSLLGGSNLLISNVTDDDSGTYTCVV-T 295
Query: 64 LEPKEITHTLEI 75
+ + I+ + E+
Sbjct: 296 YKNENISASAEL 307
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
V P Q+V G NL+I + +D G YQC
Sbjct: 353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQC 59
D R+ ++ LQI+ LQ D+G Y+C
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVYRC 194
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
K+ PD R +LV G + ++ DAGSYQC
Sbjct: 49 KMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKEITHTLEILG 77
G + + + RI +++ +L+I ++Q DAG Y+C +GT K + +E+
Sbjct: 137 GDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGT 63
+ WKR + T + D RI++ + +L I D++ +D+G Y C+ +
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGT 63
+ WKR + T + D RI++ + +L I D++ +D+G Y C+ +
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 84
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I+DL+ D+G+Y+CQ
Sbjct: 66 FSLRISDLRVEDSGTYKCQ 84
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I+DL+ D+G+Y+CQ
Sbjct: 66 FSLRISDLRVEDSGTYKCQ 84
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK 67
G T V D+ I V +L++ ++Q TDAG+Y+C I T + K
Sbjct: 70 GRTAVFADQVI--VGNASLRLKNVQLTDAGTYKCYIITSKGK 109
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I+DL+ D+G+Y+CQ
Sbjct: 66 FSLRISDLRVEDSGTYKCQ 84
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKE 68
WK + K+ P R QLV G + + + DAG YQC +GT+ +E
Sbjct: 40 WK-----MNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSRE 91
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I+DL+ D+G+Y+CQ
Sbjct: 66 FSLRISDLRVEDSGTYKCQ 84
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGT 63
+ WKR + T + D RI++ + +L I D++ +D+G Y C+ +
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 84
>pdb|1U9K|A Chain A, Crystal Structure Of Mouse Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.76
pdb|1U9K|B Chain B, Crystal Structure Of Mouse Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.76
Length = 114
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
+Q+TDLQ TD+G Y+C I
Sbjct: 77 QVQMTDLQVTDSGLYRCVI 95
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 29 KVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG 77
K D RI+LV ++ ++D+ +D G Y C + T+ K L +LG
Sbjct: 54 KALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLG 106
>pdb|2NMS|A Chain A, The Crystal Structure Of The Extracellular Domain Of The
Inhibitor Receptor Expressed On Myeloid Cells Irem-1
Length = 124
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 2 MYLSGLPDKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDL 49
+Y SG + Y+ W RG I + T+GS + R+ + D + + + DL
Sbjct: 25 VYRSGW--ETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDL 82
Query: 50 QTTDAGSYQCQI 61
TDA +Y C I
Sbjct: 83 MKTDADTYWCGI 94
>pdb|1RI8|A Chain A, Crystal Structure Of The Camelid Single Domain Antibody
1d2l19 In Complex With Hen Egg White Lysozyme
Length = 134
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 4 LSGLPDKNYVLAWKR--------GIAIL-TAGST--------KVTPDKRIQLVDGYNLQI 46
+SG D+NY + W R G+A++ ++G T + T + + L Y LQ+
Sbjct: 24 VSGYKDRNYCMGWFRRAPGKEREGVAVIDSSGRTAYADSVKGRFTISRDVALDTAY-LQM 82
Query: 47 TDLQTTDAGSYQCQIG 62
L+ D Y C G
Sbjct: 83 NSLKPEDTAMYYCAAG 98
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I+DL+ D+G+Y+CQ
Sbjct: 66 FSLRISDLRVEDSGTYKCQ 84
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 13/60 (21%)
Query: 13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---------LQITDLQTTDAGSYQCQIGT 63
V+ W +G + S+KV + +QL D Y+ L ITD Q GSY+C++ T
Sbjct: 38 VVKWFKGKWVDL--SSKVG--QHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVST 93
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 44 LQITDLQTTDAGSYQCQIG 62
LQITD++ DAG Y+C I
Sbjct: 82 LQITDVKLQDAGVYRCMIS 100
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 44 LQITDLQTTDAGSYQCQIG 62
LQITD++ DAG Y+C I
Sbjct: 82 LQITDVKLQDAGVYRCMIS 100
>pdb|1ZOX|A Chain A, Clm-1 Mouse Myeloid Receptor Extracellular Domain
Length = 113
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 3 YLSGLPDKNYVLAWKRGIA-------ILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
Y SG K+Y W +G+ + T S ++ R+ + D + + + DL+
Sbjct: 25 YTSGW--KDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLR 82
Query: 51 TTDAGSYQCQI--GTLEP 66
+DAG Y C I G L+P
Sbjct: 83 MSDAGIYWCGITKGGLDP 100
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 44 LQITDLQTTDAGSYQCQIG 62
LQITD++ DAG Y+C I
Sbjct: 82 LQITDVKLQDAGVYRCMIS 100
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 2 MYLSGLPDKNYVLAW---KRGIA---ILTAGSTKVT--PDKRIQLVDG--YNLQITDLQT 51
+Y SG+ K +LAW K G + ++ ST T PD+ G Y L IT +Q
Sbjct: 29 LYYSGI--KKNLLAWYQLKPGQSPKLLIYYASTLFTGVPDRFTGSGSGTDYTLTITSVQA 86
Query: 52 TDAGSYQCQIGTLEP 66
D G Y CQ G P
Sbjct: 87 EDMGQYFCQQGISNP 101
>pdb|3BP6|A Chain A, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
pdb|3RNK|A Chain A, Crystal Structure Of The Complex Between Mouse Pd-1
Mutant And Pd-L2 Igv Domain
pdb|3SBW|A Chain A, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Human
Pd-L1
pdb|3SBW|B Chain B, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Human
Pd-L1
Length = 117
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 21 AILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK 67
A + G ++ D R Q++ +++ I D + D+G Y C +L PK
Sbjct: 47 AAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPK 98
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 21 AILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK 67
A + G ++ D R Q++ +++ I D + D+G Y C +L PK
Sbjct: 47 AAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPK 98
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 26 GSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF 78
G + D RIQLV ++ I+++ D G Y C I T+ + + +LG
Sbjct: 83 GEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGI 139
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPK 67
Y+L+I LQ D GSY CQ + P+
Sbjct: 71 YSLKINSLQPEDFGSYYCQHFSSTPR 96
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ+ D GSY CQ
Sbjct: 71 YSLKINSLQSEDFGSYYCQ 89
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ+ D GSY CQ
Sbjct: 71 YSLKINSLQSEDFGSYYCQ 89
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex
With A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex
With A Neutralizing Antibody
Length = 214
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ+ D GSY CQ
Sbjct: 71 YSLKINSLQSEDFGSYYCQ 89
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
+ WK+G L G R L DG LQI DL DAG Y C G
Sbjct: 38 VEWKKGPETLRDGG-------RYSLKQDGTRCELQIHDLSVADAGEYSCMCG 82
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 21 AILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK 67
A + G ++ D R Q++ +++ I D + D+G Y C +L PK
Sbjct: 57 AAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPK 108
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKE 68
+ WK L + D R +VDG L +T DAG+YQC GT+ +E
Sbjct: 40 IRWK-----LNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 23 LTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
L G +T D RIQ+ G L IT + +DAG YQC
Sbjct: 330 LKNGDPLLTRD-RIQIEQG-TLNITIVNLSDAGMYQC 364
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKE 68
+ WK L + D R +VDG L +T DAG+YQC GT+ +E
Sbjct: 39 IRWK-----LNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 92
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 23 LTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
L G +T D RIQ+ G L IT + +DAG YQC
Sbjct: 329 LKNGDPLLTRD-RIQIEQG-TLNITIVNLSDAGMYQC 363
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 40 DGYNLQITDLQTTDAGSYQCQIGTLEP 66
D + L++ +LQ D G YQC I +P
Sbjct: 67 DSWTLRLHNLQIKDKGLYQCIIHHKKP 93
>pdb|3U7W|L Chain L, Crystal Structure Of Nih45-46 Fab
pdb|3U7Y|L Chain L, Structure Of Nih45-46 Fab In Complex With Gp120 Of
93th057 Hiv
Length = 210
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 14 LAW---KRGIA---ILTAGSTKVT--PDKRIQLVDG--YNLQITDLQTTDAGSYQCQ 60
LAW + G A ++ +GST+ PD+ G YNL I++L++ D G Y CQ
Sbjct: 31 LAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGADYNLSISNLESGDFGVYYCQ 87
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPK 67
Y+L+I LQ D GSY CQ P+
Sbjct: 71 YSLKINSLQPEDFGSYYCQHFASTPR 96
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPK 67
Y+L+I LQ D GSY CQ P+
Sbjct: 71 YSLKINSLQPEDFGSYYCQHFVSTPR 96
>pdb|3NGB|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|C Chain C, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|F Chain F, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|K Chain K, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
Length = 210
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 14 LAW---KRGIA---ILTAGSTKVT--PDKRIQLVDG--YNLQITDLQTTDAGSYQCQ 60
LAW + G A ++ +GST+ PD+ G YNL I++L++ D G Y CQ
Sbjct: 31 LAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQ 87
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 92 SINVTNLQLSDIGTYQCKV 110
>pdb|2W9L|A Chain A, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|B Chain B, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|G Chain G, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|J Chain J, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|K Chain K, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|O Chain O, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|P Chain P, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|T Chain T, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|V Chain V, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|X Chain X, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Y Chain Y, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Z Chain Z, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 124
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 89 SINVTNLQLSDIGTYQCKV 107
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 86 SINVTNLQLSDIGTYQCKV 104
>pdb|2WBW|B Chain B, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
Length = 128
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 92 SINVTNLQLSDIGTYQCKV 110
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 84 SINVTNLQLSDIGTYQCKV 102
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 90 SINVTNLQLSDIGTYQCKV 108
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 84 SINVTNLQLSDIGTYQCKV 102
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 17 KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
K G AI G K++ DK G+ L+I T+D+G Y C +
Sbjct: 42 KDGKAITQGGKYKLSEDK-----GGFFLEIHKTDTSDSGLYTCTV 81
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic
Antibody E5.2 Fv Fragment Complex
Length = 108
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|1KIR|A Chain A, Fv Mutant Y(A 50)s (Vl Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With
Mouse Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|1JRH|L Chain L, Complex (AntibodyANTIGEN)
Length = 213
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L IT LQT D +Y CQ
Sbjct: 71 YTLSITSLQTEDVATYYCQ 89
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|3ESV|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ESV|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ETB|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|H Chain H, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|I Chain I, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
Length = 252
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
Y+L I +L+ D G+Y CQ G P
Sbjct: 76 YSLTINNLEQEDIGTYFCQQGNTPP 100
>pdb|3RPI|L Chain L, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
pdb|3RPI|B Chain B, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
Length = 206
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
YNL I +LQ D +Y CQ+
Sbjct: 67 YNLTINNLQPEDVATYFCQV 86
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPKEI 69
Y+L+I LQ D GSY CQ P+
Sbjct: 71 YSLKINSLQPDDFGSYYCQHFWSTPRSF 98
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|3UBX|L Chain L, Crystal Structure Of The Mouse Cd1d-C20:2-Agalcer-L363
Mab Fab Complex
pdb|3UBX|I Chain I, Crystal Structure Of The Mouse Cd1d-C20:2-Agalcer-L363
Mab Fab Complex
Length = 214
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L IT LQT D +Y CQ
Sbjct: 71 YTLSITSLQTEDVATYYCQ 89
>pdb|1SQ2|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lyxozyme
pdb|1T6V|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
pdb|1T6V|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
Length = 113
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
++L+I DL D G+Y+C +G
Sbjct: 66 FSLRINDLTVEDGGTYRCGLG 86
>pdb|3RAJ|L Chain L, Crystal Structure Of Human Cd38 In Complex With The Fab
Fragment Of Antibody Hb7
Length = 211
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L IT LQT D +Y CQ
Sbjct: 70 YTLSITSLQTEDVATYYCQ 88
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 85 SINVTNLQLSDIGTYQCKV 103
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 87 SINVTNLQLSDIGTYQCKV 105
>pdb|2BDN|L Chain L, Crystal Structure Of Human Mcp-1 Bound To A Blocking
Antibody, 11k2
Length = 214
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L IT LQT D +Y CQ
Sbjct: 71 YTLSITSLQTEDVATYYCQ 89
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPEDFGSYYCQ 89
>pdb|2AVG|A Chain A, Nmr Structure Of Cc1 Domain From Human Cardiac Myosin
Binding Protein C
Length = 120
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---------LQITDLQTTDAGSYQCQIGT 63
V+ W +G + S+KV + +QL D Y+ L ITD Q G Y+C++ T
Sbjct: 48 VVKWFKGKWVDL--SSKVG--QHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVST 103
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPDDFGSYYCQ 89
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPDDFGSYYCQ 89
>pdb|3ET9|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
1h
Length = 252
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
Y+L I++L+ D G+Y CQ G P
Sbjct: 76 YSLTISNLEQEDIGTYFCQQGNTLP 100
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ D GSY CQ
Sbjct: 71 YSLKINSLQPDDFGSYYCQ 89
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEI 69
D R ++ LQI ++ TD G+Y+C+ L EI
Sbjct: 146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
>pdb|3ESU|F Chain F, Crystal Structure Of Anthrax-Neutralizing Single-Chain
Antibody 14b7
Length = 250
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
Y+L I++L+ D G+Y CQ G P
Sbjct: 74 YSLTISNLEQEDIGTYFCQQGNTLP 98
>pdb|1OSP|L Chain L, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 214
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L IT LQT D +Y CQ
Sbjct: 71 YTLSITSLQTEDVATYFCQ 89
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
D R ++ LQI ++ TD G+Y+C+ L EI
Sbjct: 47 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 84
>pdb|1FE8|L Chain L, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|M Chain M, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|N Chain N, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
Length = 211
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
Y+L I++L++ D +Y CQ G P
Sbjct: 71 YSLTISNLESEDIATYFCQNGGTNP 95
>pdb|1ZAN|L Chain L, Crystal Structure Of Anti-Ngf Ad11 Fab
Length = 214
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y+L+I LQ+ D SY CQ
Sbjct: 71 YSLKINSLQSEDVASYFCQ 89
>pdb|3IY2|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab 6 Fitted Into The Cryoem Reconstruction Of The
Virus- Fab 6 Complex
Length = 107
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I LQ D GSY CQ
Sbjct: 69 FSLKINSLQPEDFGSYYCQ 87
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 44 LQITDLQTTDAGSYQC 59
L+IT LQ +D G YQC
Sbjct: 70 LRITSLQLSDTGQYQC 85
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I LQ D GSY CQ
Sbjct: 71 FSLKINSLQPEDFGSYYCQ 89
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I LQ D GSY CQ
Sbjct: 71 FSLKINSLQPEDFGSYYCQ 89
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L+I LQ D GSY CQ
Sbjct: 71 FSLKINSLQPEDFGSYYCQ 89
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 20 IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
I+ L G T D R + + LQI +L+ +D G+Y C
Sbjct: 40 ISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTC 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,428,612
Number of Sequences: 62578
Number of extensions: 82758
Number of successful extensions: 695
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 112
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)