Query psy14103
Match_columns 78
No_of_seqs 120 out of 1043
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:37:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05853 Ig6_Contactin-4 Sixth 99.7 4.9E-16 1.1E-20 88.2 8.0 71 4-78 9-84 (85)
2 cd05881 Ig1_Necl-2 First (N-te 99.6 3.9E-15 8.4E-20 86.1 10.1 67 9-75 24-95 (95)
3 cd05854 Ig6_Contactin-2 Sixth 99.6 3.8E-15 8.2E-20 84.0 9.7 72 3-78 8-84 (85)
4 cd05892 Ig_Myotilin_C C-termin 99.6 4.3E-15 9.3E-20 82.3 8.0 64 4-75 7-75 (75)
5 cd05852 Ig5_Contactin-1 Fifth 99.6 5.3E-15 1.1E-19 81.4 7.8 63 4-75 10-73 (73)
6 cd05882 Ig1_Necl-1 First (N-te 99.6 8.7E-15 1.9E-19 84.4 8.9 70 4-75 21-95 (95)
7 cd04970 Ig6_Contactin_like Six 99.6 4.6E-15 1E-19 83.1 7.5 71 4-78 9-84 (85)
8 cd05893 Ig_Palladin_C C-termin 99.6 8.5E-15 1.9E-19 81.0 7.3 64 4-75 7-75 (75)
9 cd07701 Ig1_Necl-3 First (N-te 99.6 5E-14 1.1E-18 80.9 9.5 66 10-75 25-95 (95)
10 cd05744 Ig_Myotilin_C_like Imm 99.5 6.6E-14 1.4E-18 77.1 8.3 64 4-75 7-75 (75)
11 cd05723 Ig4_Neogenin Fourth im 99.5 6.4E-14 1.4E-18 76.3 8.1 63 4-75 8-71 (71)
12 cd05745 Ig3_Peroxidasin Third 99.5 4.2E-14 9.1E-19 77.4 7.2 63 4-75 11-74 (74)
13 cd05726 Ig4_Robo Fhird immunog 99.5 1.3E-13 2.7E-18 78.0 8.6 66 12-77 16-83 (90)
14 cd05725 Ig3_Robo Third immunog 99.5 9.6E-14 2.1E-18 74.9 7.4 61 5-75 8-69 (69)
15 cd05746 Ig4_Peroxidasin Fourth 99.5 1.5E-13 3.2E-18 74.4 7.7 61 4-73 7-68 (69)
16 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 2E-13 4.4E-18 74.8 8.1 65 4-75 7-73 (74)
17 cd04969 Ig5_Contactin_like Fif 99.5 1.9E-13 4.1E-18 74.5 7.9 57 12-75 16-73 (73)
18 cd05748 Ig_Titin_like Immunogl 99.5 4.5E-13 9.7E-18 73.0 9.1 63 4-75 8-74 (74)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 4.3E-13 9.3E-18 75.7 9.0 64 4-75 19-86 (86)
20 cd05762 Ig8_MLCK Eighth immuno 99.5 5E-13 1.1E-17 77.1 9.4 66 4-78 24-93 (98)
21 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.9E-13 6.3E-18 74.0 7.5 63 3-76 6-69 (70)
22 cd05717 Ig1_Necl-1-3_like Firs 99.5 7.8E-13 1.7E-17 75.3 8.8 66 10-75 25-95 (95)
23 cd04976 Ig2_VEGFR Second immun 99.5 1E-12 2.3E-17 71.6 8.4 63 4-76 7-70 (71)
24 cd05763 Ig_1 Subgroup of the i 99.5 6.9E-13 1.5E-17 72.6 7.4 66 4-76 7-75 (75)
25 cd05868 Ig4_NrCAM Fourth immun 99.4 1E-12 2.3E-17 72.4 8.1 66 4-76 10-76 (76)
26 cd05863 Ig2_VEGFR-3 Second imm 99.4 1E-12 2.3E-17 71.4 7.6 59 4-76 7-66 (67)
27 cd05734 Ig7_DSCAM Seventh immu 99.4 1.3E-12 2.8E-17 72.2 8.1 70 4-75 7-79 (79)
28 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.7E-12 3.6E-17 71.3 8.3 66 4-76 10-76 (76)
29 cd05735 Ig8_DSCAM Eight immuno 99.4 2.9E-12 6.2E-17 72.5 9.4 66 4-77 10-83 (88)
30 cd05876 Ig3_L1-CAM Third immun 99.4 1E-12 2.2E-17 71.5 7.1 63 4-76 7-71 (71)
31 cd05730 Ig3_NCAM-1_like Third 99.4 2.4E-12 5.2E-17 73.1 8.3 67 4-78 27-95 (95)
32 cd05736 Ig2_Follistatin_like S 99.4 6.2E-12 1.4E-16 68.8 9.1 66 4-76 7-74 (76)
33 cd05865 Ig1_NCAM-1 First immun 99.4 4.7E-12 1E-16 73.0 8.9 65 4-75 24-95 (96)
34 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.1E-12 6.8E-17 71.6 7.8 62 4-74 7-77 (79)
35 cd07702 Ig2_VEGFR-1 Second imm 99.4 2.8E-12 6E-17 70.7 7.5 52 4-64 7-58 (72)
36 cd05859 Ig4_PDGFR-alpha Fourth 99.4 2.8E-12 6E-17 74.5 7.9 72 3-76 26-100 (101)
37 PF07679 I-set: Immunoglobulin 99.4 4.5E-12 9.8E-17 70.8 8.4 63 4-75 24-90 (90)
38 cd05870 Ig5_NCAM-2 Fifth immun 99.4 3.3E-12 7.1E-17 73.2 8.0 68 4-75 25-98 (98)
39 cd05737 Ig_Myomesin_like_C C-t 99.4 4.7E-12 1E-16 71.8 8.6 63 4-75 25-92 (92)
40 cd04975 Ig4_SCFR_like Fourth i 99.4 4.7E-12 1E-16 73.7 8.5 64 4-76 27-100 (101)
41 cd05732 Ig5_NCAM-1_like Fifth 99.4 4E-12 8.7E-17 72.1 8.0 68 4-75 25-96 (96)
42 cd05760 Ig2_PTK7 Second immuno 99.4 4.8E-12 1E-16 69.8 8.1 66 4-77 7-76 (77)
43 cd04978 Ig4_L1-NrCAM_like Four 99.4 4.9E-12 1.1E-16 68.9 7.7 65 5-76 11-76 (76)
44 cd05869 Ig5_NCAM-1 Fifth immun 99.4 7.5E-12 1.6E-16 71.6 8.7 68 4-75 26-97 (97)
45 cd05731 Ig3_L1-CAM_like Third 99.4 5.6E-12 1.2E-16 67.8 7.5 62 4-75 7-70 (71)
46 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 1.2E-11 2.6E-16 69.3 8.8 63 3-74 6-79 (81)
47 cd05851 Ig3_Contactin-1 Third 99.4 5.3E-12 1.1E-16 71.4 7.2 63 4-76 25-88 (88)
48 cd05764 Ig_2 Subgroup of the i 99.4 9.5E-12 2.1E-16 67.7 8.0 62 5-75 11-74 (74)
49 cd05724 Ig2_Robo Second immuno 99.3 9.6E-12 2.1E-16 69.1 7.5 60 10-75 25-86 (86)
50 cd05740 Ig_CEACAM_D4 Fourth im 99.3 1.5E-11 3.2E-16 70.1 8.3 57 11-75 31-90 (91)
51 cd05866 Ig1_NCAM-2 First immun 99.3 1.9E-11 4.1E-16 70.0 8.8 62 4-75 24-91 (92)
52 cd05743 Ig_Perlecan_D2_like Im 99.3 1.2E-11 2.6E-16 68.2 7.6 61 4-73 10-74 (78)
53 cd05857 Ig2_FGFR Second immuno 99.3 1.4E-11 3E-16 68.4 7.9 65 5-75 19-85 (85)
54 cd04973 Ig1_FGFR First immunog 99.3 1.1E-11 2.4E-16 68.7 7.3 56 12-75 23-79 (79)
55 cd05757 Ig2_IL1R_like Second i 99.3 2.8E-11 6E-16 69.3 8.6 47 10-64 28-74 (92)
56 cd05728 Ig4_Contactin-2-like F 99.3 1.4E-11 3E-16 69.1 7.2 62 4-75 23-85 (85)
57 cd05756 Ig1_IL1R_like First im 99.3 1.1E-11 2.3E-16 71.2 6.8 62 10-75 32-94 (94)
58 cd05765 Ig_3 Subgroup of the i 99.3 2.2E-11 4.7E-16 66.9 7.6 66 5-75 11-81 (81)
59 cd05747 Ig5_Titin_like M5, fif 99.3 4.8E-11 1E-15 67.6 8.9 61 4-73 27-91 (92)
60 cd05856 Ig2_FGFRL1-like Second 99.3 1.1E-11 2.5E-16 67.9 6.2 64 4-75 18-82 (82)
61 cd04968 Ig3_Contactin_like Thi 99.3 2.8E-11 6E-16 67.9 7.8 62 5-76 26-88 (88)
62 cd05891 Ig_M-protein_C C-termi 99.3 6.9E-11 1.5E-15 67.3 8.6 63 4-75 25-92 (92)
63 cd05858 Ig3_FGFR-2 Third immun 99.3 4.8E-11 1E-15 67.4 7.2 35 42-76 55-90 (90)
64 cd04977 Ig1_NCAM-1_like First 99.3 8.2E-11 1.8E-15 66.9 8.2 62 4-75 24-92 (92)
65 cd05773 Ig8_hNephrin_like Eigh 99.2 1.1E-10 2.5E-15 68.4 8.8 66 4-77 32-106 (109)
66 cd05895 Ig_Pro_neuregulin-1 Im 99.2 7.9E-11 1.7E-15 64.4 7.6 59 10-71 12-74 (76)
67 cd05873 Ig_Sema4D_like Immunog 99.2 5.2E-11 1.1E-15 67.8 6.8 60 11-77 24-87 (87)
68 cd04972 Ig_TrkABC_d4 Fourth do 99.2 1.9E-10 4.1E-15 64.9 8.9 63 4-75 24-90 (90)
69 cd05897 Ig2_IL1R2_like Second 99.2 3.8E-11 8.3E-16 69.4 5.9 63 8-76 26-94 (95)
70 cd04974 Ig3_FGFR Third immunog 99.2 9.6E-11 2.1E-15 66.3 7.5 36 41-76 54-90 (90)
71 cd05722 Ig1_Neogenin First imm 99.2 9.7E-11 2.1E-15 66.6 7.4 64 5-75 24-95 (95)
72 cd05875 Ig6_hNeurofascin_like 99.2 3.4E-10 7.3E-15 62.6 8.9 55 4-65 7-66 (77)
73 cd05733 Ig6_L1-CAM_like Sixth 99.2 2.3E-10 5E-15 63.0 7.8 55 4-65 7-66 (77)
74 cd05900 Ig_Aggrecan Immunoglob 99.2 3.4E-10 7.3E-15 67.1 8.8 67 11-77 28-110 (112)
75 cd05774 Ig_CEACAM_D1 First imm 99.2 5E-10 1.1E-14 65.7 8.8 73 3-75 19-105 (105)
76 KOG3513|consensus 99.2 1.1E-10 2.4E-15 88.6 7.3 61 10-77 454-515 (1051)
77 cd05877 Ig_LP_like Immunoglobu 99.2 1E-09 2.2E-14 63.4 9.7 45 33-77 55-104 (106)
78 cd05713 Ig_MOG_like Immunoglob 99.2 6.7E-10 1.4E-14 63.5 8.8 68 8-75 15-99 (100)
79 cd05758 Ig5_KIRREL3-like Fifth 99.1 5.7E-10 1.2E-14 63.9 8.4 63 5-73 26-97 (98)
80 cd05878 Ig_Aggrecan_like Immun 99.1 8.9E-10 1.9E-14 64.7 9.3 67 11-77 26-108 (110)
81 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 4.7E-10 1E-14 60.9 7.5 58 4-73 10-68 (69)
82 cd05742 Ig1_VEGFR_like First i 99.1 2.5E-10 5.5E-15 63.6 6.5 69 4-75 10-83 (84)
83 cd05849 Ig1_Contactin-1 First 99.1 5.2E-10 1.1E-14 63.9 7.9 62 4-74 28-92 (93)
84 cd05750 Ig_Pro_neuregulin Immu 99.1 5.6E-10 1.2E-14 60.4 7.6 56 12-71 14-73 (75)
85 cd05848 Ig1_Contactin-5 First 99.1 8.2E-10 1.8E-14 63.1 8.5 54 4-65 28-82 (94)
86 cd05874 Ig6_NrCAM Sixth immuno 99.1 1.4E-09 3.1E-14 60.1 8.8 55 4-65 7-66 (77)
87 cd05714 Ig_CSPGs_LP Immunoglob 99.1 1.3E-09 2.9E-14 63.0 9.0 38 40-77 66-104 (106)
88 cd05775 Ig_SLAM-CD84_like_N N- 99.1 1.8E-09 4E-14 62.0 8.6 66 10-75 18-94 (97)
89 cd05741 Ig_CEACAM_D1_like Firs 99.1 1.8E-09 3.8E-14 60.6 8.2 43 32-74 47-91 (92)
90 cd07693 Ig1_Robo First immunog 99.1 1.6E-09 3.5E-14 61.0 7.7 67 5-75 26-99 (100)
91 cd04979 Ig_Semaphorin_C Immuno 99.1 1.5E-09 3.4E-14 60.9 7.3 62 11-76 24-87 (89)
92 cd05850 Ig1_Contactin-2 First 99.1 4.9E-09 1.1E-13 59.8 9.4 61 5-73 29-92 (94)
93 cd05729 Ig2_FGFR_like Second i 99.0 2.8E-09 6E-14 58.5 7.9 62 5-75 19-85 (85)
94 cd05886 Ig1_Nectin-1_like Firs 99.0 4.2E-09 9E-14 61.1 8.9 42 34-75 51-98 (99)
95 PHA02826 IL-1 receptor-like pr 99.0 1.7E-09 3.7E-14 70.8 8.0 47 11-64 163-210 (227)
96 cd05888 Ig1_Nectin-4_like Frst 99.0 9.5E-09 2.1E-13 59.3 10.0 42 34-75 51-99 (100)
97 cd05727 Ig2_Contactin-2-like S 99.0 8.2E-10 1.8E-14 64.0 5.1 50 11-65 33-83 (96)
98 cd05718 Ig1_PVR_like First imm 99.0 1.2E-08 2.7E-13 57.8 9.0 44 33-76 49-98 (98)
99 cd05889 Ig1_DNAM-1_like First 99.0 1.2E-08 2.6E-13 59.0 8.9 43 34-76 48-94 (96)
100 cd05871 Ig_Semaphorin_classIII 99.0 4.7E-09 1E-13 59.8 6.7 63 10-76 23-89 (91)
101 cd05901 Ig_Versican Immunoglob 98.9 2.8E-08 6E-13 59.4 10.1 68 10-77 26-115 (117)
102 cd05902 Ig_Neurocan Immunoglob 98.9 7.3E-09 1.6E-13 61.2 7.5 67 11-77 23-108 (110)
103 cd05887 Ig1_Nectin-3_like Firs 98.9 1.8E-08 3.9E-13 58.3 8.6 67 10-76 14-96 (96)
104 cd05879 Ig_P0 Immunoglobulin ( 98.9 1.6E-08 3.4E-13 60.2 8.1 41 34-74 67-115 (116)
105 cd05845 Ig2_L1-CAM_like Second 98.9 4.2E-09 9.2E-14 60.9 5.0 48 11-65 33-82 (95)
106 cd07690 Ig1_CD4 First immunogl 98.9 5.1E-09 1.1E-13 60.3 5.2 55 10-64 20-87 (94)
107 cd04967 Ig1_Contactin First Ig 98.9 1.8E-08 3.9E-13 56.8 7.0 48 11-64 33-81 (91)
108 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.5E-08 3.3E-13 59.4 6.7 63 12-75 41-104 (104)
109 cd05846 Ig1_MRC-OX-2_like Firs 98.9 2.3E-08 5E-13 57.1 7.4 42 34-75 49-96 (97)
110 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 2.4E-08 5.2E-13 55.9 7.2 36 41-76 45-83 (84)
111 cd05752 Ig1_FcgammaR_like Frst 98.9 1.1E-08 2.4E-13 56.8 5.6 48 12-75 31-78 (78)
112 KOG4221|consensus 98.8 1.3E-08 2.8E-13 78.4 7.5 66 4-77 261-327 (1381)
113 smart00410 IG_like Immunoglobu 98.8 7.9E-08 1.7E-12 51.4 8.7 59 10-75 22-85 (86)
114 smart00409 IG Immunoglobulin. 98.8 7.9E-08 1.7E-12 51.4 8.7 59 10-75 22-85 (86)
115 cd05754 Ig3_Perlecan_like Thir 98.8 1.5E-08 3.2E-13 56.4 5.6 54 10-73 30-84 (85)
116 KOG3513|consensus 98.8 1.8E-08 3.8E-13 76.9 7.6 67 4-77 355-422 (1051)
117 cd04983 IgV_TCR_alpha_like Imm 98.8 3.6E-08 7.9E-13 56.8 7.0 55 10-64 26-92 (109)
118 cd05862 Ig1_VEGFR First immuno 98.8 7E-08 1.5E-12 54.3 7.8 36 41-76 49-85 (86)
119 cd05716 Ig_pIgR Immunoglobulin 98.8 5.2E-08 1.1E-12 55.5 7.2 57 10-66 21-88 (98)
120 cd05880 Ig_EVA1 Immunoglobulin 98.8 5.1E-08 1.1E-12 57.6 7.4 26 40-65 77-102 (115)
121 PHA02785 IL-beta-binding prote 98.8 5.9E-08 1.3E-12 66.2 8.7 67 4-72 244-322 (326)
122 cd05715 Ig_P0-like Immunoglobu 98.8 4.5E-08 9.9E-13 57.6 7.1 26 40-65 78-103 (116)
123 cd05872 Ig_Sema4B_like Immunog 98.8 7.4E-08 1.6E-12 54.6 7.5 56 11-74 24-79 (85)
124 PHA02826 IL-1 receptor-like pr 98.7 6.8E-08 1.5E-12 63.3 7.6 67 9-76 60-133 (227)
125 smart00408 IGc2 Immunoglobulin 98.7 9.6E-08 2.1E-12 48.6 6.7 46 11-64 16-61 (63)
126 PF00047 ig: Immunoglobulin do 98.7 6.5E-09 1.4E-13 54.7 2.1 47 8-61 13-64 (64)
127 cd05898 Ig5_KIRREL3 Fifth immu 98.7 1.5E-07 3.2E-12 54.6 7.8 62 7-74 28-98 (98)
128 KOG4194|consensus 98.7 2E-08 4.3E-13 73.7 5.0 68 3-77 635-705 (873)
129 PF07686 V-set: Immunoglobulin 98.7 7.8E-08 1.7E-12 54.8 6.6 67 9-75 29-114 (114)
130 cd04984 IgV_L_lambda Immunoglo 98.7 1.8E-07 4E-12 53.3 7.4 55 10-64 21-85 (98)
131 cd05899 IgV_TCR_beta Immunoglo 98.7 1.5E-07 3.2E-12 54.7 7.0 55 10-64 25-94 (110)
132 cd00099 IgV Immunoglobulin var 98.7 1.1E-07 2.3E-12 54.3 6.2 57 10-66 20-91 (105)
133 cd05753 Ig2_FcgammaR_like Seco 98.7 6.2E-08 1.4E-12 54.2 4.9 53 11-75 29-83 (83)
134 cd05885 Ig2_Necl-4 Second immu 98.7 3.4E-07 7.3E-12 51.4 7.7 64 10-75 13-80 (80)
135 smart00406 IGv Immunoglobulin 98.6 1.8E-07 3.9E-12 50.6 6.4 30 32-61 47-81 (81)
136 cd04982 IgV_TCR_gamma Immunogl 98.6 2.4E-07 5.2E-12 54.2 6.8 56 9-64 27-99 (116)
137 cd05759 Ig2_KIRREL3-like Secon 98.6 4.4E-07 9.5E-12 50.1 7.5 63 12-75 15-82 (82)
138 cd04980 IgV_L_kappa Immunoglob 98.6 2.3E-07 5E-12 53.6 6.6 54 11-64 30-93 (106)
139 PHA02785 IL-beta-binding prote 98.6 2.4E-07 5.3E-12 63.2 7.6 59 9-76 153-216 (326)
140 PHA02987 Ig domain OX-2-like p 98.6 6.9E-07 1.5E-11 57.2 8.6 68 10-77 44-123 (189)
141 cd07706 IgV_TCR_delta Immunogl 98.6 3.4E-07 7.4E-12 53.6 6.6 55 10-64 28-94 (116)
142 KOG4222|consensus 98.6 1E-07 2.2E-12 73.2 5.2 61 11-76 161-223 (1281)
143 cd05712 Ig_Siglec_N Immunoglob 98.5 1.2E-06 2.6E-11 51.8 6.8 32 33-64 66-102 (119)
144 PF13895 Ig_2: Immunoglobulin 98.5 2.1E-06 4.7E-11 46.0 7.3 50 12-75 29-80 (80)
145 KOG4221|consensus 98.4 7E-07 1.5E-11 69.2 6.9 61 10-77 168-230 (1381)
146 cd05771 IgC_Tapasin_R Tapasin- 98.4 4E-07 8.7E-12 54.9 4.5 36 42-77 1-37 (139)
147 cd05749 Ig2_Tyro3_like Second 98.4 2.1E-06 4.6E-11 47.9 7.0 57 4-73 22-80 (81)
148 cd05720 Ig_CD8_alpha Immunoglo 98.4 3.4E-06 7.4E-11 48.8 7.0 31 33-63 57-90 (104)
149 PHA03376 BARF1; Provisional 98.3 6.1E-06 1.3E-10 53.3 8.3 56 10-65 42-110 (221)
150 cd07700 IgV_CD8_beta Immunoglo 98.2 3.1E-06 6.8E-11 49.1 5.1 31 33-63 58-93 (107)
151 cd04981 IgV_H Immunoglobulin ( 98.2 9.4E-06 2E-10 48.0 6.9 31 33-63 62-97 (117)
152 cd00098 IgC Immunoglobulin Con 98.2 8.2E-06 1.8E-10 45.7 6.3 60 4-65 22-85 (95)
153 cd05860 Ig4_SCFR Fourth immuno 98.2 1.6E-05 3.4E-10 46.5 7.3 66 5-76 28-100 (101)
154 PHA02633 hypothetical protein; 98.2 8E-06 1.7E-10 43.8 4.9 37 40-76 16-53 (63)
155 cd00096 Ig Immunoglobulin doma 98.1 1E-05 2.2E-10 40.7 5.2 57 9-65 10-66 (74)
156 PF13927 Ig_3: Immunoglobulin 98.1 3.7E-06 7.9E-11 44.4 2.8 25 39-63 51-75 (75)
157 cd05751 Ig1_LILRB1_like First 98.0 1.8E-05 3.8E-10 44.7 5.0 25 40-64 51-75 (91)
158 cd05883 Ig2_Necl-2 Second immu 97.9 0.00032 6.8E-09 39.5 8.9 66 10-77 13-81 (82)
159 PF07354 Sp38: Zona-pellucida- 97.9 2.5E-05 5.5E-10 52.3 4.4 47 11-64 12-59 (271)
160 cd07705 Ig2_Necl-1 Second immu 97.8 0.00021 4.5E-09 39.9 6.7 65 7-75 12-83 (83)
161 cd05721 IgV_CTLA-4 Immunoglobu 97.8 0.00015 3.2E-09 43.3 6.1 61 4-64 22-96 (115)
162 PF11465 Receptor_2B4: Natural 97.8 9.3E-05 2E-09 43.6 5.1 44 33-76 61-105 (108)
163 KOG4222|consensus 97.7 9.5E-05 2.1E-09 57.5 5.8 67 9-75 342-410 (1281)
164 smart00407 IGc1 Immunoglobulin 97.7 0.0009 2E-08 36.4 8.1 59 4-64 8-70 (75)
165 cd05761 Ig2_Necl-1-4_like Seco 97.7 0.00057 1.2E-08 37.8 7.4 51 12-64 15-67 (82)
166 cd05884 Ig2_Necl-3 Second immu 97.6 0.00061 1.3E-08 38.1 7.2 51 12-64 15-68 (83)
167 cd07694 Ig2_CD4 Second immunog 97.5 0.00075 1.6E-08 38.5 6.5 39 40-78 49-88 (88)
168 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00064 1.4E-08 38.6 6.3 21 42-62 55-75 (94)
169 cd05770 IgC_beta2m Class I maj 97.5 0.0016 3.4E-08 37.3 7.8 56 3-64 23-82 (93)
170 cd05847 IgC_CH2_IgE CH2 domain 97.5 0.00083 1.8E-08 38.4 6.5 60 4-65 23-86 (94)
171 cd07699 IgC_L Immunoglobulin C 97.4 0.00088 1.9E-08 38.6 5.8 60 4-65 26-89 (100)
172 cd05767 IgC_MHC_II_alpha Class 97.4 0.0022 4.8E-08 36.7 7.4 58 3-65 23-84 (94)
173 KOG4194|consensus 97.4 0.00049 1.1E-08 51.3 5.6 65 5-76 730-796 (873)
174 cd05772 IgC_SIRP Signal-regula 97.3 0.0042 9.1E-08 36.6 8.1 59 4-65 30-92 (111)
175 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0031 6.6E-08 35.6 7.2 58 3-65 22-83 (93)
176 PF08204 V-set_CD47: CD47 immu 97.2 0.00049 1.1E-08 41.9 3.5 65 10-75 45-119 (130)
177 cd05771 IgC_Tapasin_R Tapasin- 97.1 0.0066 1.4E-07 36.4 7.5 58 5-64 63-130 (139)
178 cd07697 IgC_TCR_gamma T cell r 97.1 0.0077 1.7E-07 34.7 7.4 58 4-65 25-85 (96)
179 cd05766 IgC_MHC_II_beta Class 97.1 0.014 3.1E-07 33.2 8.4 58 3-65 22-83 (94)
180 PF07654 C1-set: Immunoglobuli 97.1 0.0022 4.8E-08 35.3 4.9 58 3-65 16-77 (83)
181 cd05769 IgC_TCR_beta T cell re 97.0 0.0079 1.7E-07 35.7 7.0 60 4-65 27-92 (115)
182 cd05719 Ig2_PVR_like Second im 96.9 0.0059 1.3E-07 35.0 6.0 65 5-75 26-95 (95)
183 cd05755 Ig2_ICAM-1_like Second 96.8 0.0083 1.8E-07 34.9 6.2 58 5-64 27-84 (100)
184 cd07696 IgC_CH3 CH3 domain (th 96.8 0.016 3.5E-07 33.2 7.2 60 3-64 22-85 (96)
185 cd07703 Ig2_Nectin-2_like Seco 96.7 0.0082 1.8E-07 34.5 5.7 61 12-75 31-95 (95)
186 cd04985 IgC_CH1 CH1 domain (fi 96.6 0.0099 2.1E-07 34.0 5.4 59 4-65 25-87 (95)
187 cd05768 IgC_CH4 CH4 domain (fo 96.6 0.0098 2.1E-07 34.4 5.3 61 3-65 24-91 (102)
188 cd04986 IgC_CH2 CH2 domain (se 96.3 0.015 3.3E-07 33.7 5.0 57 4-65 28-89 (99)
189 cd07692 Ig_CD3_epsilon Immunog 96.1 0.054 1.2E-06 29.3 6.1 35 14-63 21-55 (65)
190 KOG1480|consensus 95.9 0.0026 5.7E-08 48.3 0.6 59 12-77 160-222 (909)
191 PHA02982 hypothetical protein; 95.5 0.093 2E-06 34.7 6.4 36 40-75 98-135 (251)
192 cd07691 Ig_CD3_gamma_delta Imm 95.3 0.047 1E-06 29.8 4.0 38 12-63 17-54 (69)
193 cd07704 Ig2_Nectin-3-4_like Se 94.9 0.15 3.1E-06 29.5 5.5 67 5-75 28-97 (97)
194 PHA03042 CD47-like protein; Pr 94.8 0.31 6.8E-06 33.2 7.6 53 10-73 49-102 (286)
195 PF08205 C2-set_2: CD80-like C 94.7 0.34 7.3E-06 26.5 7.7 58 4-65 24-84 (89)
196 PHA03282 envelope glycoprotein 94.4 0.13 2.9E-06 37.5 5.4 43 32-75 115-160 (540)
197 PHA02914 Immunoglobulin-like d 94.0 0.16 3.4E-06 36.6 5.0 36 40-75 79-114 (500)
198 cd07689 Ig2_VCAM-1 Second immu 92.9 0.41 8.8E-06 27.9 4.8 56 6-63 27-84 (99)
199 KOG4597|consensus 91.3 0.61 1.3E-05 34.2 5.0 63 11-75 225-291 (560)
200 PHA03282 envelope glycoprotein 90.4 0.68 1.5E-05 33.9 4.6 31 40-70 331-361 (540)
201 PHA02914 Immunoglobulin-like d 90.2 0.3 6.6E-06 35.1 2.7 45 31-75 326-380 (500)
202 PHA03286 envelope glycoprotein 89.6 0.88 1.9E-05 33.1 4.6 29 42-70 307-335 (492)
203 PF02480 Herpes_gE: Alphaherpe 87.6 0.89 1.9E-05 32.8 3.7 31 40-70 267-297 (439)
204 PHA03283 envelope glycoprotein 85.8 2.1 4.5E-05 31.7 4.7 32 40-71 313-344 (542)
205 PHA02865 MHC-like TNF binding 85.8 3.5 7.5E-05 29.0 5.6 19 48-66 287-305 (338)
206 PF01688 Herpes_gI: Alphaherpe 83.3 5.7 0.00012 25.1 5.3 34 40-73 122-156 (161)
207 PHA03281 envelope glycoprotein 82.3 3.3 7.1E-05 31.1 4.5 32 40-71 473-504 (642)
208 KOG3515|consensus 82.3 4.5 9.7E-05 31.3 5.4 56 8-64 125-185 (741)
209 PF02480 Herpes_gE: Alphaherpe 81.8 0.44 9.6E-06 34.3 0.0 38 40-77 87-126 (439)
210 PF05790 C2-set: Immunoglobuli 81.3 7.2 0.00016 21.6 6.5 33 40-72 41-73 (80)
211 PHA03286 envelope glycoprotein 80.3 8.9 0.00019 28.2 6.0 46 32-77 115-164 (492)
212 KOG3611|consensus 79.1 4.9 0.00011 31.0 4.7 34 32-65 602-635 (737)
213 PHA03240 envelope glycoprotein 78.0 1.6 3.5E-05 29.0 1.7 26 33-58 95-121 (258)
214 PHA03283 envelope glycoprotein 76.8 14 0.00029 27.7 6.2 38 40-77 132-170 (542)
215 PF06214 SLAM: Signaling lymph 70.0 10 0.00022 22.8 3.5 31 32-62 92-123 (126)
216 PF11327 DUF3129: Protein of u 69.6 8.4 0.00018 24.7 3.4 24 42-65 93-116 (184)
217 PHA03290 envelope glycoprotein 65.2 21 0.00046 25.2 4.9 25 40-64 127-151 (357)
218 PF02124 Marek_A: Marek's dise 65.1 18 0.0004 23.8 4.4 54 4-64 98-160 (211)
219 PHA03289 envelope glycoprotein 64.1 21 0.00045 25.2 4.6 25 40-64 120-144 (352)
220 KOG3515|consensus 61.2 13 0.00028 28.8 3.5 49 12-65 432-481 (741)
221 PHA03292 envelope glycoprotein 59.9 36 0.00078 24.6 5.3 25 40-64 126-150 (413)
222 COG5475 Uncharacterized small 56.7 12 0.00027 19.6 2.0 18 2-19 20-38 (60)
223 PF06491 Disulph_isomer: Disul 56.6 13 0.00027 22.9 2.3 23 3-25 88-110 (136)
224 PHA03189 UL14 tegument protein 49.7 24 0.00052 24.8 3.1 33 32-65 119-156 (348)
225 PF02440 Adeno_E3_CR1: Adenovi 47.5 44 0.00095 17.8 4.3 16 40-55 48-63 (63)
226 PRK15372 pathogenicity island 45.0 12 0.00026 25.5 1.0 29 32-60 63-91 (292)
227 PF15096 G6B: G6B family 44.0 22 0.00049 23.3 2.1 26 50-77 82-107 (224)
228 PF10430 Ig_Tie2_1: Tie-2 Ig-l 42.9 50 0.0011 19.0 3.2 14 51-64 72-85 (96)
229 PHA03270 envelope glycoprotein 42.5 53 0.0011 24.2 4.0 18 7-24 247-264 (466)
230 PHA03291 envelope glycoprotein 41.4 80 0.0017 22.7 4.7 25 40-64 127-151 (401)
231 PHA03269 envelope glycoprotein 41.3 99 0.0021 23.3 5.2 18 7-24 355-372 (566)
232 KOG0200|consensus 41.1 21 0.00045 26.7 1.9 24 40-63 11-34 (609)
233 PHA03281 envelope glycoprotein 40.8 61 0.0013 24.7 4.1 38 40-77 296-335 (642)
234 PRK09919 anti-adapter protein 38.0 62 0.0013 19.3 3.2 39 13-51 29-68 (114)
235 PF11781 RRN7: RNA polymerase 36.4 17 0.00038 17.0 0.6 10 51-60 20-29 (36)
236 PHA03269 envelope glycoprotein 36.0 1E+02 0.0022 23.3 4.6 23 40-62 287-309 (566)
237 PF10572 UPF0556: Uncharacteri 35.0 88 0.0019 19.8 3.7 18 51-68 69-86 (158)
238 PRK00137 rplI 50S ribosomal pr 34.3 1.1E+02 0.0025 18.7 4.4 28 50-77 119-146 (147)
239 PF03948 Ribosomal_L9_C: Ribos 34.1 88 0.0019 17.4 3.7 27 51-77 60-86 (87)
240 TIGR00158 L9 ribosomal protein 32.8 1.2E+02 0.0026 18.6 4.4 34 44-77 114-147 (148)
241 PF11049 KSHV_K1: Glycoprotein 30.3 99 0.0022 16.8 5.3 49 4-70 3-52 (71)
242 PF01082 Cu2_monooxygen: Coppe 29.2 1E+02 0.0022 18.3 3.3 26 41-66 3-29 (132)
243 PF06328 Lep_receptor_Ig: Ig-l 29.1 1.1E+02 0.0024 17.1 4.4 45 11-63 37-83 (89)
244 KOG4637|consensus 28.1 71 0.0015 23.2 2.7 24 40-65 352-375 (464)
245 PHA03270 envelope glycoprotein 27.9 1.7E+02 0.0037 21.7 4.6 30 35-64 172-204 (466)
246 TIGR03355 VI_chp_2 type VI sec 26.9 1.6E+02 0.0034 21.9 4.4 37 40-77 431-470 (473)
247 PHA02935 Hypothetical protein; 26.9 1.5E+02 0.0033 19.9 4.0 20 42-61 102-121 (349)
248 KOG1671|consensus 24.7 1.6E+02 0.0036 19.4 3.8 21 4-24 92-113 (210)
249 PF08644 SPT16: FACT complex s 24.2 33 0.00071 21.4 0.5 16 42-57 22-37 (152)
250 CHL00160 rpl9 ribosomal protei 22.9 2E+02 0.0043 17.9 4.4 27 51-77 126-152 (153)
251 PHA03273 envelope glycoprotein 22.9 2.3E+02 0.0051 21.1 4.6 22 42-63 198-219 (486)
252 PF00630 Filamin: Filamin/ABP2 22.7 74 0.0016 17.3 1.7 26 49-74 64-89 (101)
253 cd00501 Peptidase_C15 Pyroglut 22.1 42 0.00091 21.2 0.7 12 51-62 134-145 (194)
254 KOG3644|consensus 20.3 1.4E+02 0.0031 21.9 3.1 51 7-62 193-243 (457)
No 1
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.67 E-value=4.9e-16 Score=88.18 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=57.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF 78 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~ 78 (78)
+++.+...+.|.|+|+++.|.+.. ...||... ..++|+|.+++.+|+|.|+|.+.|. ...+..+.|.|.|+
T Consensus 9 v~~d~~l~~~~~W~~dg~~i~~~~----~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 9 VSHDHSLDIVFTWSFNGHLIDFQK----DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred eccCCCCCcEEEEEECCEECcccC----CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence 445566678999999999986431 34578764 4578999999999999999999987 58899999999985
No 2
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.65 E-value=3.9e-15 Score=86.06 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=56.4
Q ss_pred CCCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 9 DKNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 9 ~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
.++..+.|++ +..++.+++.....++||++. .+++|+|++++.+|+|.|+|++.+.++.+..++++|
T Consensus 24 ~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~~ 95 (95)
T cd05881 24 NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTITV 95 (95)
T ss_pred CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEEC
Confidence 3456799998 556676766676799999976 467899999999999999999999999999988875
No 3
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.65 E-value=3.8e-15 Score=84.01 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=57.7
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE---E-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL---V-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~---~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
.++|.|..+..+.|+|++..+.... .+.||.. . ..++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|
T Consensus 8 ~a~g~P~p~~~v~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~ 83 (85)
T cd05854 8 HASHDPTMDLTFTWSLDDFPIDLDK----PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRG 83 (85)
T ss_pred EEecCCCCCeEEEEEECCeEccccC----CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEEC
Confidence 3678888888899999988775421 2445532 2 4579999999999999999999987 5889999999998
Q ss_pred C
Q psy14103 78 F 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 84 ~ 84 (85)
T cd05854 84 P 84 (85)
T ss_pred C
Confidence 5
No 4
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.62 E-value=4.3e-15 Score=82.28 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=51.7
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|.+ .|.|+|++..|.. ..+||++..+ .+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 7 v~G~P~P--~i~W~k~~~~i~~------~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 7 ISAIPPP--KIFWKRNNEMVQY------NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEecCCC--eEEEEECCEECcC------CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5677665 8999999888753 2468887522 38999999999999999999987 58888888876
No 5
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=5.3e-15 Score=81.40 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=52.2
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+. .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+.+++|.|
T Consensus 10 ~~g~P~--p~v~W~k~~~~l~-------~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 10 PKAAPK--PKFSWSKGTELLV-------NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred cceeCC--CEEEEEeCCEecc-------cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 345554 5899999887663 357999888899999999999999999999987 58888888875
No 6
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.61 E-value=8.7e-15 Score=84.37 Aligned_cols=70 Identities=29% Similarity=0.476 Sum_probs=56.4
Q ss_pred EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
+.|.| .+.|.|+|.+ .++.++......+.||.+. .+++|.|.+|+.+|+|.|+|++.+.+..+..++|.|
T Consensus 21 v~g~~--~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~v 95 (95)
T cd05882 21 VKEHD--NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV 95 (95)
T ss_pred EeCCC--CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEEC
Confidence 45554 4679999954 5566666666678999865 358999999999999999999999888899988876
No 7
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=4.6e-15 Score=83.08 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=56.0
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE----EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF 78 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~----~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~ 78 (78)
++|.|.....+.|+|++..+.... .+.++. ...+++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|+
T Consensus 9 ~~g~P~p~i~~~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 9 ASHDPTLDLTFTWSFNGVPIDFDK----DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EecCCCCCeEEEEEECCeEeeccC----CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 577888777889999988775432 223332 225689999999999999999999987 58899999999875
No 8
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=8.5e-15 Score=80.98 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=52.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCe----EEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGY----NLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~----sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|.+ .|.|+|++..+.. ...|+.+..+. +|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 7 v~G~P~P--~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 7 VSGVPHP--QIFWKKENESLTH------NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EeEecCC--EEEEEECCEECCC------CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5777776 8999999887742 34688876332 7999999999999999999987 57888888876
No 9
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.57 E-value=5e-14 Score=80.95 Aligned_cols=66 Identities=29% Similarity=0.484 Sum_probs=52.8
Q ss_pred CCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
+.+.|.|+| +..+|..++.....++||.+. .+++|.|.+++.+|+|.|+|++.+.+..+..+.|.|
T Consensus 25 p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 25 DNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred CceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 346799998 345665555444578899874 458999999999999999999999888899999876
No 10
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.55 E-value=6.6e-14 Score=77.14 Aligned_cols=64 Identities=25% Similarity=0.372 Sum_probs=51.0
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|.+ .|.|+|++..+.. ...|+.+..+ .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 7 v~G~P~P--~v~W~k~~~~i~~------~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 7 VSAIPPP--QIFWKKNNEMLTY------NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EeecCCC--eEEEEECCEECCC------CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5677765 8999999887753 2457877522 37999999999999999999987 58888888875
No 11
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.55 E-value=6.4e-14 Score=76.27 Aligned_cols=63 Identities=25% Similarity=0.449 Sum_probs=51.0
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+. +..|+.+..+..|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 8 ~~G~P~--p~v~W~k~g~~~~-------~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 8 VTGKPT--PTVKWVKNGDMVI-------PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEeCC--CEEEEEECCeECC-------CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 456665 4899999887653 346788877889999999999999999999987 57778877765
No 12
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=4.2e-14 Score=77.41 Aligned_cols=63 Identities=27% Similarity=0.545 Sum_probs=51.0
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+. .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 11 ~~g~P~--p~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 11 AQGYPQ--PVIAWTKGGSQLS-------VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCEecC--CEEEEEECCEECC-------CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 345555 4799999887664 346777777889999999999999999999987 57888888875
No 13
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=1.3e-13 Score=78.02 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=50.8
Q ss_pred cEEEEEeCCE-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 12 YVLAWKRGIA-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 12 ~~v~W~k~~~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
+.|.|+|++. .+...........||.+..+++|+|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus 16 p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 16 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 5799999653 2222111123467998887889999999999999999999986 6888999999976
No 14
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=9.6e-14 Score=74.90 Aligned_cols=61 Identities=26% Similarity=0.549 Sum_probs=48.9
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
.|.|. +.+.|+|++..+ +.+|+.+..+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 8 ~g~P~--p~v~W~k~~~~~--------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 8 GGDPV--PTVLWRKEDGEL--------PKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred ccCCC--CEEEEEECCccC--------CCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 45544 479999985543 346888888889999999999999999999987 57777777765
No 15
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=1.5e-13 Score=74.40 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=49.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
+.|.|.+ .|.|+|++..+. ...|+.+..+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|
T Consensus 7 ~~g~P~p--~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 7 AQGDPEP--TITWNKDGVQVT-------ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred ceEeCCC--EEEEEECCEECC-------CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4566654 799999887663 457888877889999999999999999999987 566666655
No 16
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.51 E-value=2e-13 Score=74.79 Aligned_cols=65 Identities=25% Similarity=0.413 Sum_probs=51.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+.. ..+.|+....+++|.|.+++.+|+|.|+|.+.|.. ..+..+.|.|
T Consensus 7 ~~G~P~--p~v~W~k~~~~~~~-----~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 7 ASGNPD--PEITWFKDFLPVDT-----TSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EeEecC--CEEEEEECCEECcc-----CCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 356655 48999998876642 14578888888899999999999999999999874 3477888776
No 17
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.9e-13 Score=74.53 Aligned_cols=57 Identities=25% Similarity=0.503 Sum_probs=48.8
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.+.|+|++..+. .++|+.+..+.+|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 16 p~v~W~k~~~~~~-------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 16 PTISWSKGTELLT-------NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CEEEEEECCEEcc-------cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 5899999887764 457888888889999999999999999999987 57788888765
No 18
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.50 E-value=4.5e-13 Score=73.04 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=50.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|.+ .+.|+|++..+. .++|+.+. ....|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 8 ~~G~P~p--~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 8 ISGRPTP--TVTWSKDGKPLK-------LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EeeeCCC--eEEEEECCEEcC-------CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 5677765 799999988773 34677665 3578999999999999999999987 57777777765
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=4.3e-13 Score=75.69 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=50.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|.+ .|.|+|++..+.. .++|+.+. ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 19 ~~G~P~P--~v~W~k~~~~i~~------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 19 ISGEPAP--TVTWSRGDKAFTE------TEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EeecCCC--eEEEEECCEECcc------CCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 4666654 8999999887753 24578765 3478999999999999999999987 57777777765
No 20
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.49 E-value=5e-13 Score=77.10 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=53.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF 78 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~ 78 (78)
++|-|. +.|.|+|++..|. .+.|+.+. ....|.|.+++.+|+|.|+|.+.|. +..+..++|.|+++
T Consensus 24 ~~G~p~--p~v~W~kdg~~l~-------~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~ 93 (98)
T cd05762 24 VTGTQP--ITCTWMKFRKQIQ-------EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDK 93 (98)
T ss_pred EcccCC--CceEEEECCEEec-------CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecC
Confidence 355554 5799999998884 34567665 3578999999999999999999988 68889999999864
No 21
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.49 E-value=2.9e-13 Score=74.04 Aligned_cols=63 Identities=21% Similarity=0.434 Sum_probs=48.5
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
-+.|+|.+ .+.|+|++..|.. +.++ ....+|.|.++..+|+|.|+|.+.|. +..+..++++|+
T Consensus 6 ~v~G~P~P--~v~W~k~g~~l~~-------~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 6 KYYGYPPP--EVKWYKNGQLIVL-------NHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEEEeCCC--EEEEEECCEECCC-------CCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 46788875 7899999988742 2222 34568999999999999999999987 466777777664
No 22
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.47 E-value=7.8e-13 Score=75.32 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=50.8
Q ss_pred CCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
+.+.+.|++ +..++..+......++||.+. .+++|.|.+|+.+|+|.|+|++.+..+.+..+.|+|
T Consensus 25 ~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 25 DNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred CCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 346899987 344554444333456899874 457999999999999999999998777788888876
No 23
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.46 E-value=1e-12 Score=71.62 Aligned_cols=63 Identities=21% Similarity=0.419 Sum_probs=47.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
+.|.|.+ .+.|+|++..+.. +.|+. ....+|.|.+++.+|+|.|+|.+.|. +..+...+++|+
T Consensus 7 v~g~P~p--~v~W~k~g~~l~~-------~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 7 VKAYPPP--EIQWYKNGKLISE-------KNRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred EEEeCCC--EEEEEECCEECCC-------CCEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4677764 7899999887743 24553 35689999999999999999999986 455666666553
No 24
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=6.9e-13 Score=72.55 Aligned_cols=66 Identities=23% Similarity=0.493 Sum_probs=49.7
Q ss_pred EeccCCCCcEEEEEeCCEE-EEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAI-LTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
++|.|.+ .|+|+|++.. +.. ..+.|+.+. .+..|.|.+++.+|+|.|+|.+.|. +..+..++|.|+
T Consensus 7 ~~G~P~P--~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 7 ATGHPTP--QIAWQKDGGTDFPA-----ARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred cccccCC--EEEEEeCCCccCCc-----ccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 3555554 7999997642 221 234677765 4578999999999999999999986 578888888874
No 25
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=1e-12 Score=72.41 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=50.2
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
++|.|. +.|.|+|++..+... +..+....++..|.|.+++.+|+|.|+|.+.|. +.....+.|+|+
T Consensus 10 a~G~P~--P~i~W~k~g~~i~~~-----~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 10 ANGNPK--PSISWLTNGVPIEIA-----PTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred eeEeCC--CeEEEEECCEEcccc-----CCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 467765 489999998877532 112222335568999999999999999999998 588899999885
No 26
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.44 E-value=1e-12 Score=71.41 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=46.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
++|.|.+ .+.|+|++..|.. | .....|.|.++..+|+|.|+|.+.|. +..+...+|+|.
T Consensus 7 v~g~P~P--~v~W~kdg~~l~~---------~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 7 VAAYPPP--EFQWYKDGKLISG---------K---HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EEEeCCC--EEEEEECCEECcc---------c---CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5677765 7999999988742 1 13469999999999999999999987 566666666664
No 27
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=1.3e-12 Score=72.19 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=49.5
Q ss_pred EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V 75 (78)
++|.|.+ .|.|+|+. ............++|+.+..+++|.|.+++.+|+|.|+|.+.|. + ..+..+.|+|
T Consensus 7 ~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 7 AEGYPPP--TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEeCCC--EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4566664 89999953 22111111112568898888899999999999999999999987 3 4467777764
No 28
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.44 E-value=1.7e-12 Score=71.32 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=50.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
+.|.|. +.|.|+|++..+.... .+.|+.+ .+++|.|.+++.+|+|.|+|.+.|. +.....++|.|.
T Consensus 10 ~~G~P~--p~i~W~k~g~~i~~~~----~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 10 VEGIPT--PNITWSINGAPIEGTD----PDPRRHV-SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred eeEeCC--CeEEEEECCEECCCCC----CCceEEe-eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 345655 4899999988775321 2346654 5679999999999999999999986 588888888873
No 29
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=2.9e-12 Score=72.52 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=51.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc-------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD-------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~-------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.| .+.|.|.|++..+.. ...||.+.. ..+|.|.++..+|+|.|+|.+.|. +..+..+.|.|
T Consensus 10 ~~g~p--~~~i~W~k~~~~i~~------~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 10 AHGEK--PIIVRWEKEDRIINP------EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred EECCC--CCEEEEeeCCEECCC------CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 34544 358999998877642 235776541 157999999999999999999998 68889999998
Q ss_pred Ee
Q psy14103 76 LG 77 (78)
Q Consensus 76 ~g 77 (78)
..
T Consensus 82 ~~ 83 (88)
T cd05735 82 QE 83 (88)
T ss_pred eC
Confidence 74
No 30
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.43 E-value=1e-12 Score=71.48 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=47.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE-EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ-LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
+.|.|.+ .|.|+|++..+.. .|.. ...+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus 7 ~~G~P~P--~v~W~k~~~~~~~--------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 7 AEGLPTP--EVHWDRIDGPLSP--------NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred eeEecCC--eEEEEECCcCCCC--------CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4566665 8999998755432 2222 346789999999999999999999987 577788887763
No 31
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.42 E-value=2.4e-12 Score=73.15 Aligned_cols=67 Identities=15% Similarity=0.387 Sum_probs=52.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF 78 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~ 78 (78)
+.|.|. +.|.|+|++..+.. .+.|+.+..+ ..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..|
T Consensus 27 ~~g~P~--p~v~W~k~g~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 95 (95)
T cd05730 27 ADGFPE--PTMTWTKDGEPIES------GEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK 95 (95)
T ss_pred ccEeCC--CEEEEEECCEECcC------CCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEeC
Confidence 345554 57999998887643 2356766543 47999999999999999999987 57889999998764
No 32
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.40 E-value=6.2e-12 Score=68.79 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=51.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
+.|.|. +.|.|+|++..+..+ ...|+.+..+ ..|.|.+++.+|.|.|+|.+.|. +..+.++.|.|.
T Consensus 7 v~g~P~--p~v~W~k~~~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 7 AEGIPL--PRLTWLKNGMDITPK-----LSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred eeecCC--CEEEEEECCEECCCC-----CCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 456665 489999988776432 2357776654 46999999999999999999987 577888888875
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=4.7e-12 Score=72.95 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=47.3
Q ss_pred EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V 75 (78)
++|.|.. +.|.|+| ++..+.. ...|+.+.. ..+|.|.+++.+|+|.|+|.+.|. +..+.++.|.|
T Consensus 24 v~G~P~~-p~i~W~~~~g~~l~~------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 24 VAGEAKD-KDISWFSPNGEKLTP------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EeCCCCC-CEEEEECCCCcCccc------cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 5676652 5899998 6665532 245776642 268999999999999999999996 35566666655
No 34
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.40 E-value=3.1e-12 Score=71.63 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=46.0
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----E----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----V----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE 74 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~ 74 (78)
+.|.|.+ .|+|+|++..|.. ++|+.. . ..+.|.|.++..+|+|.|+|.|.|. +..+.++.++
T Consensus 7 v~G~P~P--ti~W~kng~~l~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 7 VKGNPKP--TLQWFHEGAILNE-------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EeEeCCC--ceEEEECCEECCC-------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 5677775 8899999988853 233211 1 2468999999999999999999987 5666666554
No 35
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=2.8e-12 Score=70.66 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=41.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
+.|.|.+ .+.|+|++..+.. ...|+.. ...+|.|.+|+.+|+|.|+|.+.+.
T Consensus 7 v~g~P~P--~v~W~kdg~~l~~------~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 7 VKAFPAP--EVIWLKDGLPAAE------KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred EEEcCCC--eEEEEECCEECCC------CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEcc
Confidence 5677765 7899999987743 1246654 4569999999999999999999986
No 36
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.40 E-value=2.8e-12 Score=74.53 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=49.9
Q ss_pred eEeccCCCCcEEEEEeCCEEEEeccccc-CCCCCEE-EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTKV-TPDKRIQ-LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~-~~~~R~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
-+.|+|.+ .|.|+|++..|..+.... ....... .....+|+|.+++.+|+|.|+|.+.|. +..+.++.|.|.
T Consensus 26 ~v~g~P~P--~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 26 EVEAYPPP--QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEeCCC--ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 36788876 789999998886322110 0000000 011358999999999999999999987 578888888875
No 37
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.39 E-value=4.5e-12 Score=70.76 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=50.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.| .+.|.|++++..+.. +.|+.+. ...+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|
T Consensus 24 ~~~~p--~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 24 VSGNP--PPTVTWYKNGRPLTS-------SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEESS--SSEEEEEETTEEEES-------SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCC--CCcccccccccceee-------eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 46664 468999999988864 5677765 5789999999999999999999987 36667777765
No 38
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=3.3e-12 Score=73.24 Aligned_cols=68 Identities=28% Similarity=0.537 Sum_probs=49.1
Q ss_pred EeccCCCCcEEEEEeC--CEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRG--IAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|. +.|.|+|+ +..+..+. ...+.|+.+. ...+|.|.+|+.+|+|.|+|.+.|. +..+..+.|+|
T Consensus 25 ~~G~P~--p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 25 AEGEPI--PEITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred cccCCC--CeEEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 345554 47999983 34443211 1235688876 3468999999999999999999987 57778888875
No 39
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=4.7e-12 Score=71.84 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=47.9
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+. .++|+.+. ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 25 v~G~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 25 VFGDPD--PEVSWLKNDQALA-------LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEecCC--CeEEEEECCEECc-------cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 456655 4799999987774 34566654 2358999999999999999999986 57777777654
No 40
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.39 E-value=4.7e-12 Score=73.67 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=48.3
Q ss_pred Eec-cCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-c-------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 4 LSG-LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-D-------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 4 ~~~-~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~-------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
+.| .|. +.+.|+|++..|.. +.+..+. . ..+|.|.+|..+|+|.|+|.+.|. +..+.++.|
T Consensus 27 v~g~~P~--p~v~W~Kdg~~i~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L 97 (101)
T cd04975 27 VEAYPPP--PHINWTYDNRTLTN-------KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFEL 97 (101)
T ss_pred EEecCCC--CccEEEeCCeeCCC-------CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence 556 443 48899999988853 2232222 2 378999999999999999999987 588888888
Q ss_pred EEE
Q psy14103 74 EIL 76 (78)
Q Consensus 74 ~V~ 76 (78)
.|.
T Consensus 98 ~V~ 100 (101)
T cd04975 98 YVN 100 (101)
T ss_pred EEE
Confidence 875
No 41
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.39 E-value=4e-12 Score=72.08 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=49.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|. +.|.|+|++..+..... ..+.|+.+. ...+|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 25 ~~g~p~--p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 25 AEGDPI--PEITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EeEcCC--CcEEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 456654 47899998755543211 235677765 2368999999999999999999987 57788888765
No 42
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.39 E-value=4.8e-12 Score=69.84 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=48.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEEe
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEILG 77 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~g 77 (78)
+.|.|. +.|.|+|++..+.. ...++.+. .+.+|.|.+++.+|+|.|+|.+.|. +.. +..++|+|..
T Consensus 7 ~~g~P~--p~v~W~k~g~~l~~------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 7 IDGHPR--PTYQWFRDGTPLSD------GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred eeecCC--CcEEEEECCEECCC------CCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 456655 47999999877643 23466655 4569999999999999999999986 333 4567777653
No 43
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.38 E-value=4.9e-12 Score=68.87 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=48.7
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
.|.|. +.|.|++++..+.... .. +.....+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus 11 ~g~P~--p~i~W~~~g~~~~~~~----~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 11 EGIPQ--PTITWRLNGVPIEELP----PD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred eeeCC--CEEEEEECCEECCCCC----Cc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 45554 4799999887764321 11 223346689999999999999999999987 588888888874
No 44
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.38 E-value=7.5e-12 Score=71.62 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=50.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|. +.|.|+|++..+..... ..++|+.+.. ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus 26 ~~G~P~--P~v~W~~~~~~~~~~~~--~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 26 ASGDPI--PSITWRTSTRNISSEEK--TLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred eeEeCC--CEEEEEECCccccCCcc--ccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 456665 58999997765543211 1346776653 368999999999999999999987 58888888875
No 45
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.37 E-value=5.6e-12 Score=67.75 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=46.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|.+ .+.|+|++..+.. .|.... ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 7 ~~g~P~p--~v~W~k~~~~~~~--------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 7 AEGLPTP--EISWIKIGGELPA--------DRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred eeEecCC--eEEEEECCeECCC--------CceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4677765 7999997765532 233332 4568999999999999999999987 47777777776
No 46
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.36 E-value=1.2e-11 Score=69.28 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=45.5
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----------EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----------VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH 71 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----------~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~ 71 (78)
.+.|.|.+ .|+|+|++..|..+ ++... ...+.|.|.+++.+|+|.|+|.+.|. +..+...
T Consensus 6 ~v~G~P~P--~v~W~k~g~~i~~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 6 TVRGNPKP--TLTWYHNGAVLNES-------DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred EeEeeCCC--cEEEEECCEECcCC-------CceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 46777765 78999999887532 22211 12457999999999999999999997 4555555
Q ss_pred EEE
Q psy14103 72 TLE 74 (78)
Q Consensus 72 ~L~ 74 (78)
.|+
T Consensus 77 ~~~ 79 (81)
T cd04971 77 SAH 79 (81)
T ss_pred Eee
Confidence 543
No 47
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.36 E-value=5.3e-12 Score=71.37 Aligned_cols=63 Identities=21% Similarity=0.467 Sum_probs=47.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
++|.|.+ .|.|+|++..+. ...|+.. .+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus 25 ~~G~P~P--~v~W~k~~~~~~-------~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 25 ALGNPVP--VIRWRKILEPMP-------ATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred ecccCCC--EEEEEECCcCCC-------CCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 4566654 899999775543 2334443 4568999999999999999999987 578888888774
No 48
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=9.5e-12 Score=67.66 Aligned_cols=62 Identities=23% Similarity=0.361 Sum_probs=47.6
Q ss_pred eccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
.|.|. +.|.|++ ++..+. ...|+....+++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 11 ~g~P~--p~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 11 RGDPE--PAIHWISPDGKLIS-------NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred cCcCC--CEEEEEeCCCEEec-------CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 34443 5899997 566653 346777777889999999999999999999986 46667777664
No 49
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.34 E-value=9.6e-12 Score=69.06 Aligned_cols=60 Identities=22% Similarity=0.498 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V 75 (78)
+.+.|.|+|++..+.. .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. + ..+..+.|.|
T Consensus 25 p~p~i~W~k~g~~~~~------~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 25 PEPTVSWRKDGQPLNL------DNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred CCCEEEEEECCEECCC------CCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 3468999998877643 356887777889999999999999999999987 3 3456666654
No 50
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.34 E-value=1.5e-11 Score=70.13 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=45.7
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
.+.|.|+|++..+. .+|+.+. .+.+|.|.+++.+|+|.|+|.+.|.. ..+..+.|.|
T Consensus 31 ~p~i~W~kng~~l~--------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 31 ATYIWWVNNGSLLV--------PPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEEEECCEECC--------CCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 57899999887663 3567665 45799999999999999999999873 4567777776
No 51
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.34 E-value=1.9e-11 Score=70.03 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=46.2
Q ss_pred EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
++|.|. .|.|+| ++..+. ...|+.+..++ +|.|.+++.+|+|.|+|.+.|.. ..+.++.|+|
T Consensus 24 ~~G~P~---~v~W~k~~g~~~~-------~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 24 AIGEPE---SIDWYNPQGEKIV-------SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEeCC---eEEEEeCCCeEec-------CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 567664 689998 455553 34788876444 89999999999999999999874 3356666654
No 52
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.34 E-value=1.2e-11 Score=68.23 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=44.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
+.|.|. +.|.|+|+...+. .++|+.+. ....|.|.+++.+|+|.|+|.+.|. +.....+.+
T Consensus 10 ~~g~P~--p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 10 ATGVPT--PIINWRLNWGHVP-------DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred EEEecC--CEEEEEECCeECC-------CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 456665 5899999876553 35678765 3478999999999999999999986 444444443
No 53
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.33 E-value=1.4e-11 Score=68.45 Aligned_cols=65 Identities=15% Similarity=0.315 Sum_probs=47.3
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+|.| .+.|.|+|++..+..+. ...++.+. ..++|.|.+++.+|+|.|+|.+.|. +..+..++|+|
T Consensus 19 ~g~P--~p~i~W~k~g~~l~~~~----~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 19 AGNP--TPTMRWLKNGKEFKQEH----RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred CCCC--CCEEEEEECCEECCCCC----ceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 4544 45899999987764321 11223332 5678999999999999999999986 57777777765
No 54
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.33 E-value=1.1e-11 Score=68.68 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=44.2
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|+|++..|. .+.|+.+. +.+|.|.+++.+|+|.|+|.+.+. +..+..+.|+|
T Consensus 23 ~~v~W~k~g~~l~-------~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 23 QSINWTKDGVQLG-------ENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred ceEEEeeCCcCCC-------CCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 4799999987763 35678765 458999999999999999999875 46666666654
No 55
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.32 E-value=2.8e-11 Score=69.35 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..+.|.|+|++..+.. .+..+..+..|.|.+|+.+|+|.|+|.+.+.
T Consensus 28 ~~p~i~Wyk~~~~i~~--------~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 28 TLPPVQWYKDCKLLEG--------DRKRFVKGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred CCCcEEEeECCEECCC--------CccEEecCCEEEEeeCChhhCEEEEEEEEec
Confidence 4578999999987742 2232337789999999999999999999975
No 56
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.32 E-value=1.4e-11 Score=69.07 Aligned_cols=62 Identities=27% Similarity=0.457 Sum_probs=48.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|. +.+.|+|++..+. .+.|+.+ .+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus 23 ~~g~p~--p~v~W~k~g~~~~-------~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 23 ASGNPR--PAYRWLKNGQPLA-------SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred eeEeCC--CEEEEEECCEECC-------CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 456664 5899999888764 3457765 4568999999999999999999987 46677777764
No 57
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.31 E-value=1.1e-11 Score=71.20 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.+.|.|+|++..+.... ....|+.. .++.|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus 32 p~~~v~Wyk~~~~~~~~~---~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 32 PGLNLTWYKSDGKTPIPT---EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred CCceEEEEEcCCCCcccc---cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 456899999765432210 12356644 4689999999999999999999986 57778887765
No 58
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.31 E-value=2.2e-11 Score=66.95 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=45.8
Q ss_pred eccCCCCcEEEEEeCC---E-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGI---A-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~---~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+|.|. +.|.|+|+. . .+.... ....++.....++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 11 ~g~P~--p~v~W~k~~~~~~~~~~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 11 TGRPP--PEITWEKQVHGKENLIMRPN---HVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cccCC--CcEEEEecCCCCcceeecCC---cccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 45444 479999952 1 111100 1124566667789999999999999999999986 57777777765
No 59
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.30 E-value=4.8e-11 Score=67.60 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=46.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
+.|.|. +.+.|+|++..+. .+.|+.+.. ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|
T Consensus 27 ~~g~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 27 VDGEPA--PTVTWMREGQIIV-------SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EeecCC--CEEEEEECCEECC-------CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 345565 4799999887663 356787752 469999999999999999999986 466666555
No 60
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=1.1e-11 Score=67.92 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=44.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.|. +.+.|+|++..+... ..+.......+|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus 18 ~~g~p~--p~i~W~k~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 18 ASGNPR--PDITWLKDNKPLTPT------EIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeEeCC--CcEEEEECCcCCcCC------ccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 455554 468999987655321 11121224579999999999999999999986 46666666654
No 61
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=2.8e-11 Score=67.93 Aligned_cols=62 Identities=19% Similarity=0.412 Sum_probs=46.1
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
.|.|. +.|.|+|++..+. ...++. ..+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus 26 ~g~P~--p~v~W~k~~~~~~-------~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 26 LGNPV--PQIKWRKVDGSMP-------SSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred eEeCC--CEEEEEECCCcCC-------CccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 45544 4799999664432 123333 46689999999999999999999987 577888888773
No 62
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.27 E-value=6.9e-11 Score=67.26 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=46.2
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--c--CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--D--GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~--~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.+.|+|++..+. .++||.+. . ..+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus 25 v~g~P~--p~i~W~k~~~~~~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 25 VFGNPD--PEVIWFKNDQDIE-------LSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEeCC--CeEEEEECCEECC-------CCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 345554 5799999876653 34666553 2 248999999999999999999986 46677776654
No 63
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.25 E-value=4.8e-11 Score=67.42 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=31.6
Q ss_pred eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 42 YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
.+|.|.+|+.+|+|.|+|.+.|. +.....+.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 58999999999999999999987 588888999884
No 64
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.25 E-value=8.2e-11 Score=66.94 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=44.1
Q ss_pred EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V 75 (78)
++|.| +.|.|++ ++..+. ..+|+.+.. ..+|+|.+++.+|+|.|+|.+.|. + ..+.++.|+|
T Consensus 24 ~~G~p---~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 24 VIGEP---KDISWFSPNGEKLV-------TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred eEeeC---CeEEEECCCCCEec-------cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 56764 2799997 555543 234555442 258999999999999999999986 3 4566666654
No 65
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.25 E-value=1.1e-10 Score=68.36 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=50.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCC-CCCCEEEEEEeecc-CCceEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQ-TTDAGSYQCQIGTL-EPKEITHTLE 74 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~L~ 74 (78)
+.|.|. +.+.|.|++..|.. .++||.+. ...+|+|.++. .+|.|.|+|.+.|. +..+..+.|.
T Consensus 32 a~G~P~--p~i~W~k~g~~l~~------~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~ 103 (109)
T cd05773 32 AQGVPR--VQFRWAKNGVPLDL------GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLV 103 (109)
T ss_pred CcccCC--CEEEEEECCEECCC------CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEE
Confidence 345554 58999999887742 24577533 13689999997 69999999999987 5888999998
Q ss_pred EEe
Q psy14103 75 ILG 77 (78)
Q Consensus 75 V~g 77 (78)
|..
T Consensus 104 ~~~ 106 (109)
T cd05773 104 STS 106 (109)
T ss_pred ecC
Confidence 865
No 66
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.24 E-value=7.9e-11 Score=64.44 Aligned_cols=59 Identities=22% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH 71 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~ 71 (78)
+.+.+.|+|++..+.... ....|+.+. ...+|.|.+++.+|+|.|+|.+.|. +..+.++
T Consensus 12 p~~~~~W~~~g~~i~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 12 PSLRFKWFKNGKEIGAKN---KPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CCCceEEEECCcccccCC---CCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 346899999887775321 123455443 3478999999999999999999986 3444443
No 67
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.24 E-value=5.2e-11 Score=67.79 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=45.8
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc----CCceEEEEEEEEe
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL----EPKEITHTLEILG 77 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~L~V~g 77 (78)
.+.|.|.|++..|.. ...|+.+ .++.|.|.+|+.+|+|.|+|.+... ......+++.+.|
T Consensus 24 ~~~i~W~~ng~~i~~------~~~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~~~~~~~~~~~ 87 (87)
T cd05873 24 LARVVWKFDGKVLTP------ESAKYLL-YRDGLLIFNASEADAGRYQCLSVEKSKAKLFTQTVAKYVLEG 87 (87)
T ss_pred CCeEEEEECCEECCC------CCceEEE-ECCcEEEeCCCHHHCEEEEEEEEecccCceeEeEEEeeeecC
Confidence 468999999988753 2357765 4578999999999999999999976 4555556655543
No 68
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.23 E-value=1.9e-10 Score=64.87 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE---EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL---VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~---~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+.|.|. +.|.|+|++..+.. ..+... ....+|.|.+++.+|.|.|+|.+.|. +..+..++|.|
T Consensus 24 ~~G~P~--p~v~W~~~g~~~~~-------~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 24 AEGSPL--PKVEWIIAGLIVIQ-------TRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEcCC--CeEEEEECCEEccC-------CccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 566664 58999998876632 122222 24568999999999999999999987 57788888765
No 69
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=3.8e-11 Score=69.36 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=46.2
Q ss_pred CCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-C----CceEEEEEEEE
Q psy14103 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-E----PKEITHTLEIL 76 (78)
Q Consensus 8 ~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~----~~~~~~~L~V~ 76 (78)
+..++.|.|+|+...|.. .+.|+... +...|.|.+|+.+|+|.|+|++.+. + ..+....|.|+
T Consensus 26 ~~~~~~v~WYKd~~~l~~------~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v~ 94 (95)
T cd05897 26 NRTDVELQWYKDSVLLDK------DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRIV 94 (95)
T ss_pred CCCCCcEEEccCCEECcC------CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEEc
Confidence 455678999999987753 23456553 4467999999999999999999974 2 44555666554
No 70
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.22 E-value=9.6e-11 Score=66.30 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=31.8
Q ss_pred CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 41 GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 41 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
...|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 468999999999999999999987 577888888873
No 71
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=9.7e-11 Score=66.61 Aligned_cols=64 Identities=28% Similarity=0.368 Sum_probs=47.3
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccC-----CCCCCEEEEEEeecc-C--CceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDL-----QTTDAGSYQCQIGTL-E--PKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v-----~~~D~G~Y~C~~~~~-~--~~~~~~~L~V 75 (78)
.|.| .+.|.|+|++..+... .+.|+.+..+++|.|.++ ..+|+|.|+|.+.|. . ..+..++|.|
T Consensus 24 ~g~P--~p~i~W~k~g~~l~~~-----~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 24 EGEP--PPKIEWKKDGVLLNLV-----SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred ccCC--CCEEEEEECCeECccc-----cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 4454 5799999998877532 234666677788999888 589999999999987 4 3366777664
No 72
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=3.4e-10 Score=62.59 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=41.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~ 65 (78)
+.|.|. +.|.|+|++..+.. ..++|+.+. .+++|.|.+++. +|+|.|+|.+.|..
T Consensus 7 ~~G~P~--P~v~W~k~g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05875 7 AKGNPV--PTFQWTRNGKFFNV-----AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNL 66 (77)
T ss_pred ccccCC--CEEEEEECCEEccC-----cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEecc
Confidence 456654 58999998876632 256788774 678999998753 46999999999974
No 73
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.19 E-value=2.3e-10 Score=63.03 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=41.7
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~ 65 (78)
++|.|. +.|.|+|++..+..+ .+.|+.+. .+++|.|.+++. +|+|.|+|.+.|..
T Consensus 7 ~~G~P~--P~v~W~k~g~~l~~~-----~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05733 7 AKGNPP--PTFSWTRNGTHFDPE-----KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNEL 66 (77)
T ss_pred CcccCC--CeEEEEECCeECCCC-----CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCC
Confidence 345554 489999998776432 34677664 578999999864 79999999999974
No 74
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.19 E-value=3.4e-10 Score=67.07 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=49.7
Q ss_pred CcEEEEEeC-----CEEE-Eecccc-c--CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103 11 NYVLAWKRG-----IAIL-TAGSTK-V--TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE 74 (78)
Q Consensus 11 ~~~v~W~k~-----~~~l-~~~~~~-~--~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~ 74 (78)
...|.|+|. ..++ ..+... . .-.+|+++. .+.+|+|.+++.+|+|.|.|.+... ...+..+.|.
T Consensus 28 ~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 28 SPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred CCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence 569999982 2333 232221 1 112499885 5799999999999999999999977 5788999999
Q ss_pred EEe
Q psy14103 75 ILG 77 (78)
Q Consensus 75 V~g 77 (78)
|.|
T Consensus 108 v~g 110 (112)
T cd05900 108 VKG 110 (112)
T ss_pred EEe
Confidence 987
No 75
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.17 E-value=5e-10 Score=65.66 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=51.7
Q ss_pred eEeccCCCCcEEEEEeC-----C-EEEEecc--cc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--Cce
Q psy14103 3 YLSGLPDKNYVLAWKRG-----I-AILTAGS--TK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKE 68 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~-----~-~~l~~~~--~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~ 68 (78)
.+.++|..-..+.|+|+ . .++.... .. ..-.+|..+..+++|.|++++.+|+|.|+|++.+.. ..+
T Consensus 19 ~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~ 98 (105)
T cd05774 19 LVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQ 98 (105)
T ss_pred EecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEE
Confidence 45667776679999994 2 2222111 11 124689999999999999999999999999999764 455
Q ss_pred EEEEEEE
Q psy14103 69 ITHTLEI 75 (78)
Q Consensus 69 ~~~~L~V 75 (78)
..++|.|
T Consensus 99 ~~v~l~V 105 (105)
T cd05774 99 ATVHLQV 105 (105)
T ss_pred EEEEEEC
Confidence 6655554
No 76
>KOG3513|consensus
Probab=99.16 E-value=1.1e-10 Score=88.57 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=53.3
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
+.+.++|+|++..+ ...+||.+..+++|.|.+++.+|+|.|+|.+.|+ +..+.+++|.|.-
T Consensus 454 P~p~~~W~k~~~~~-------~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd 515 (1051)
T KOG3513|consen 454 PKPKVSWLKGGEKL-------LQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD 515 (1051)
T ss_pred CcceEEEEcCCccc-------ccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec
Confidence 35789999977643 3579999999999999999999999999999998 6899999999863
No 77
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.16 E-value=1e-09 Score=63.45 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=38.3
Q ss_pred CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
.+|+.+. .+.+|.|.+++.+|+|.|.|.+.+. +..+..++|.|.|
T Consensus 55 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 55 QGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred cCcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 4688874 3579999999999999999999876 4778899999887
No 78
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.15 E-value=6.7e-10 Score=63.52 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=45.3
Q ss_pred CCCCcEEEEEeCC--EEE--Eeccccc------CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC-CceEE
Q psy14103 8 PDKNYVLAWKRGI--AIL--TAGSTKV------TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEIT 70 (78)
Q Consensus 8 ~~~~~~v~W~k~~--~~l--~~~~~~~------~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~ 70 (78)
+.....|.|+|.. .++ ....... .-.+|+.+. .+.+|+|.+++.+|+|.|+|.+.+.+ ..+..
T Consensus 15 ~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~ 94 (100)
T cd05713 15 SAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEAT 94 (100)
T ss_pred CCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEE
Confidence 3345689999843 222 2211110 112588764 35899999999999999999999754 56677
Q ss_pred EEEEE
Q psy14103 71 HTLEI 75 (78)
Q Consensus 71 ~~L~V 75 (78)
+.|+|
T Consensus 95 i~l~v 99 (100)
T cd05713 95 VELKV 99 (100)
T ss_pred EEEEE
Confidence 77766
No 79
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.15 E-value=5.7e-10 Score=63.87 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=45.9
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-------eEEEEccCCCCC-CEEEEEEeecc-CCceEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-------YNLQITDLQTTD-AGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-------~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~L 73 (78)
.|.|.+ ..|.|.+++..+..+ .++||.+... .+|.|.+++.+| .|.|+|.+.|. +..+..++|
T Consensus 26 ~g~P~P-~~v~W~~~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 26 FSTPPP-DRIVWTWKENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred cccCCC-CEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 444443 158999988777532 2468877633 489999999955 89999999987 466676665
No 80
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.15 E-value=8.9e-10 Score=64.74 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=49.5
Q ss_pred CcEEEEEeC-----CEEE-Eecccc-c--CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103 11 NYVLAWKRG-----IAIL-TAGSTK-V--TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE 74 (78)
Q Consensus 11 ~~~v~W~k~-----~~~l-~~~~~~-~--~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~ 74 (78)
...|.|+|. ..++ ..+... . .-.+|+++. .+.+|+|++++.+|+|.|.|.+... ...+..+.|+
T Consensus 26 ~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 26 SPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred CCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEE
Confidence 578999983 1222 222221 1 223688873 5689999999999999999999976 5889999999
Q ss_pred EEe
Q psy14103 75 ILG 77 (78)
Q Consensus 75 V~g 77 (78)
|.|
T Consensus 106 V~g 108 (110)
T cd05878 106 VTG 108 (110)
T ss_pred EEE
Confidence 987
No 81
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.14 E-value=4.7e-10 Score=60.88 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=41.7
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
+.|.|.+ .|.|+|++..+. ...|+.. ....|.|.+++ |+|.|+|.+.|. +..+..++|
T Consensus 10 a~G~P~P--~v~W~k~g~~l~-------~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 10 AVGAPMP--YVKWMKGGEELT-------KEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred eeecCCC--EEEEEECCEECC-------Cccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 4566664 899999887663 2345543 34589999974 899999999987 466666665
No 82
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.14 E-value=2.5e-10 Score=63.56 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=44.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
++|.+...+.|.|.+.+..+..... ...|... ....+|.|.+++.+|+|.|+|.+.+. +..+.++.|.|
T Consensus 10 ~~g~~~~~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 10 VLTELNEGVDFQWTYPGKKRGRGKS---MVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEeCCCccEEEEEecCCcccCCceE---eecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 4555445678999875433221110 0111111 13468999999999999999999987 46677777765
No 83
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.14 E-value=5.2e-10 Score=63.94 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=44.7
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC--CceEEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE--PKEITHTLE 74 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~--~~~~~~~L~ 74 (78)
++|.|. +.++|+|++..+.. ...|+.+. ++.|.|.++. .+|+|.|+|.+.|.. ..+..++|.
T Consensus 28 a~G~P~--P~i~W~k~~~~i~~------~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 28 ARANPF--PIYKWRKNNLDIDL------TNDRYSMV-GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CccCCC--CEEEEEECCEEccC------CCCeEEEE-CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 345655 48999998876632 24577654 5799999985 699999999999873 334555553
No 84
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.14 E-value=5.6e-10 Score=60.43 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=39.3
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH 71 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~ 71 (78)
+.+.|+|++..+..... ...+.+. ...+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 14 p~~~W~k~g~~l~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 14 LRFKWFKDGKELNRKNK----PRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred ceEEEEcCCeeccccCC----cceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 68999998877754211 1112232 3578999999999999999999986 4544444
No 85
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.13 E-value=8.2e-10 Score=63.08 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=40.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~ 65 (78)
+.|.|. +.|+|+|++..|..+ .+.|+.+ .+++|.|.++. .+|+|.|+|.+.|..
T Consensus 28 ~~G~P~--P~i~W~k~g~~l~~~-----~~~~~~~-~~g~L~i~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05848 28 ARGNPV--PTYRWLRNGTEIDTE-----SDYRYSL-IDGNLIISNPSEVKDSGRYQCLATNSI 82 (94)
T ss_pred eeecCC--CEEEEEECCeECccC-----CCceEEe-eCCeEEEccCCccCcCEEEEEEEEcCC
Confidence 456655 489999998777432 2346654 45799999985 699999999999874
No 86
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.12 E-value=1.4e-09 Score=60.07 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=40.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~ 65 (78)
+.|.|. +.|.|+|++..+.. ..++++.+. .+++|.|..++. .|+|.|+|.+.|..
T Consensus 7 a~G~P~--P~i~W~k~g~~l~~-----~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05874 7 AKGKPP--PSFSWTRNGTHFDI-----DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNER 66 (77)
T ss_pred CcccCC--CeEEEEECCeECCC-----cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCC
Confidence 345544 58999998876632 234667655 578999998875 38999999999974
No 87
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.11 E-value=1.3e-09 Score=62.99 Aligned_cols=38 Identities=37% Similarity=0.554 Sum_probs=34.2
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
.+.+|+|.+++.+|+|.|.|.+.+. ...+..++|.|.|
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 5789999999999999999999976 4668999999987
No 88
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.09 E-value=1.8e-09 Score=61.98 Aligned_cols=66 Identities=29% Similarity=0.567 Sum_probs=43.2
Q ss_pred CCcEEEEEeCCEE-E-Eec----ccccCCC----CCEEEEc-CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 10 KNYVLAWKRGIAI-L-TAG----STKVTPD----KRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~~~~-l-~~~----~~~~~~~----~R~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
....|.|+|.... + ... ......+ .|+.+.. +++|+|.+++.+|+|.|.|++.+.+......++.|
T Consensus 18 ~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L 94 (97)
T cd05775 18 EIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTL 94 (97)
T ss_pred EEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEE
Confidence 3468999985422 2 222 1111122 4666654 59999999999999999999997665554544443
No 89
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.08 E-value=1.8e-09 Score=60.59 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEE
Q psy14103 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLE 74 (78)
Q Consensus 32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~ 74 (78)
-.+|+.+..+++|+|.+++.+|+|.|+|++.... +......|.
T Consensus 47 ~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 47 YSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred cCCeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 3578888888999999999999999999999764 444444444
No 90
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.07 E-value=1.6e-09 Score=60.99 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=42.6
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEc-----cCCCCCCEEEEEEeecc-CC-ceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQIT-----DLQTTDAGSYQCQIGTL-EP-KEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~-----~v~~~D~G~Y~C~~~~~-~~-~~~~~~L~V 75 (78)
.|.|. +.|.|+|++..+..... ....+..+..++++.+. .++.+|+|.|+|.+.|. +. .+..+.|.|
T Consensus 26 ~g~P~--p~i~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 26 EGRPT--PTIQWLKNGQPLETDKD--DPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCCC--CEEEEEECCEECccccC--CCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 44443 58999999887754211 01233334444443322 33789999999999987 44 678888877
No 91
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.05 E-value=1.5e-09 Score=60.94 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=43.7
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL 76 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~ 76 (78)
...+.|+|++..+..... ...|+... ...|.|.+++.+|+|.|+|.+.+.. ....+.+|.|.
T Consensus 24 ~~~i~W~k~~~~~~~~~~---~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 24 LASVVWLFQGGPLQRKEE---PEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CceEEEEECCcccccccC---cCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 458999998765533210 12466554 4569999999999999999998653 55566677664
No 92
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.05 E-value=4.9e-09 Score=59.79 Aligned_cols=61 Identities=31% Similarity=0.379 Sum_probs=43.8
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC--CceEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE--PKEITHTL 73 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~--~~~~~~~L 73 (78)
.|.|. +.++|+|++..+... .+.|+.+. +++|.|.++. .+|+|.|+|.+.|.. ..+..+.|
T Consensus 29 ~g~P~--p~i~W~~~g~~l~~~-----~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 29 RASPP--ATYRWKMNGTEIKFA-----PESRYTLV-AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred eeCCC--CEEEEEECCEECccC-----CCceEEEE-CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 35544 589999998877532 34577665 5789999865 599999999999873 33455555
No 93
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.04 E-value=2.8e-09 Score=58.49 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=43.6
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+|.|. +.|.|+|++..+.. +.++... ..+.|.|.+++.+|+|.|+|.+.+. +..+.+..|+|
T Consensus 19 ~~~p~--~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 19 SGNPR--PTITWLKDGKPFKK-------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred CCCCC--CeEEEEECCEECcc-------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 44443 57999998766542 2223221 3468999999999999999999986 45667766654
No 94
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=99.04 E-value=4.2e-09 Score=61.14 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=35.1
Q ss_pred CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
+|..+. .+.+|.|++++.+|+|.|.|.+.+.+ ..+..+.|.|
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 677665 46999999999999999999999854 6677777776
No 95
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.04 E-value=1.7e-09 Score=70.82 Aligned_cols=47 Identities=30% Similarity=0.528 Sum_probs=39.6
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+.|.|+|+++.|. .++|+.+. .+.+|.|.+|+.+|+|.|+|.+...
T Consensus 163 ~p~I~WyKng~~l~-------~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 163 DYTLTWYKNGNIVL-------YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CceEEEEECCEECC-------CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 57999999998874 35688776 4468999999999999999999963
No 96
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.03 E-value=9.5e-09 Score=59.29 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=33.5
Q ss_pred CCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEE
Q psy14103 34 KRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEI 75 (78)
Q Consensus 34 ~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V 75 (78)
+|..+. .+.+|+|++|+.+|+|.|+|.+.+. +..+..+.|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 466554 4789999999999999999999974 35567777766
No 97
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.01 E-value=8.2e-10 Score=63.95 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=37.5
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.+.+.|+|+...+.. ..++|..+. .+++|.|.+|+.+|+|.|+|.+.+..
T Consensus 33 ~p~~~W~k~~~~~~~-----~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 33 DLSYRWLLNEFPNFI-----PEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CCEEEEEECCccccc-----ccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence 368999998643321 124444454 58999999999999999999999853
No 98
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.97 E-value=1.2e-08 Score=57.79 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=34.9
Q ss_pred CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEE
Q psy14103 33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEIL 76 (78)
Q Consensus 33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~ 76 (78)
..|..+. .+.+|+|.+|+.+|+|.|.|++.+. +..+....|.|+
T Consensus 49 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 49 EGRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred CceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 4566654 4789999999999999999999854 466777777774
No 99
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.97 E-value=1.2e-08 Score=59.00 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=36.8
Q ss_pred CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103 34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL 76 (78)
Q Consensus 34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~ 76 (78)
+|..+. .+.+|.|.||+.+|+|.|+|.+.+.|..+..+.+.|.
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 577665 4799999999999999999999998877777777775
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=4.7e-09 Score=59.83 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=42.8
Q ss_pred CCcEEEEEeC--CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103 10 KNYVLAWKRG--IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL 76 (78)
Q Consensus 10 ~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~ 76 (78)
+.+.+.|+|+ +..... ......|+... +.+|.|.+++++|+|.|+|.+.+.. .....++|+|+
T Consensus 23 p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~-~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 23 PQASVKWLFQRGGDQRKE---EVKTEERLIHT-ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred CCceEEEEEECCCCCccc---cccccccEEEe-cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 4468999983 211110 11235688664 4679999999999999999998532 34467777775
No 101
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.95 E-value=2.8e-08 Score=59.44 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=50.1
Q ss_pred CCcEEEEEeC-----------CEE-EEecccc---cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCc
Q psy14103 10 KNYVLAWKRG-----------IAI-LTAGSTK---VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPK 67 (78)
Q Consensus 10 ~~~~v~W~k~-----------~~~-l~~~~~~---~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~ 67 (78)
..+.|.|.|- ..+ ++.+... ..-.+|.++. .+.+|+|.+++.+|+|.|.|.+... ...
T Consensus 26 ~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~ 105 (117)
T cd05901 26 EFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDT 105 (117)
T ss_pred CCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCccc
Confidence 5679999872 122 3333221 1234688774 5799999999999999999999976 577
Q ss_pred eEEEEEEEEe
Q psy14103 68 EITHTLEILG 77 (78)
Q Consensus 68 ~~~~~L~V~g 77 (78)
+..+.|+|.|
T Consensus 106 ~~~v~L~V~G 115 (117)
T cd05901 106 QDTVSLDVSG 115 (117)
T ss_pred EEEEEEEEEE
Confidence 8999999987
No 102
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.94 E-value=7.3e-09 Score=61.18 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=49.3
Q ss_pred CcEEEEEeC------CE-E-E-Eeccc-c--cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103 11 NYVLAWKRG------IA-I-L-TAGST-K--VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH 71 (78)
Q Consensus 11 ~~~v~W~k~------~~-~-l-~~~~~-~--~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~ 71 (78)
.+.|.|.|. .. . + +.+.. . ..-.+|+++. .+.+|+|++++.+|+|.|.|.+... ...+..+
T Consensus 23 ~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v 102 (110)
T cd05902 23 GPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTV 102 (110)
T ss_pred CCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEE
Confidence 589999973 11 1 2 22211 1 1345788875 4789999999999999999999975 4788999
Q ss_pred EEEEEe
Q psy14103 72 TLEILG 77 (78)
Q Consensus 72 ~L~V~g 77 (78)
.|+|.|
T Consensus 103 ~L~V~g 108 (110)
T cd05902 103 PLEVTG 108 (110)
T ss_pred EEEEEE
Confidence 999987
No 103
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.93 E-value=1.8e-08 Score=58.28 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCcEEEEEeC----CEEEEeccc----cc--CCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103 10 KNYVLAWKRG----IAILTAGST----KV--TPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL 73 (78)
Q Consensus 10 ~~~~v~W~k~----~~~l~~~~~----~~--~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L 73 (78)
....|.|.|. ...+..-.. .+ .-.+|..+. .+.+|.|.||+.+|+|.|.|.+.+.| ..+....|
T Consensus 14 ~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l 93 (96)
T cd05887 14 TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTV 93 (96)
T ss_pred cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEE
Confidence 4468999882 233332111 11 123577663 57899999999999999999998765 66677777
Q ss_pred EEE
Q psy14103 74 EIL 76 (78)
Q Consensus 74 ~V~ 76 (78)
.|+
T Consensus 94 ~~~ 96 (96)
T cd05887 94 TVL 96 (96)
T ss_pred EEC
Confidence 663
No 104
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.91 E-value=1.6e-08 Score=60.21 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEE
Q psy14103 34 KRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLE 74 (78)
Q Consensus 34 ~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~ 74 (78)
+|..+. ++.+|.|++++.+|+|.|+|++.+.+ .....++|.
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 477764 67899999999999999999999865 233555554
No 105
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.89 E-value=4.2e-09 Score=60.86 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=39.9
Q ss_pred CcEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103 11 NYVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE 65 (78)
Q Consensus 11 ~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~ 65 (78)
.+.|.|+++. ..+ ..+.|+.+..+++|.|.+|+.+|+| .|.|.+.+..
T Consensus 33 ~P~i~W~~~~~~~i-------~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 33 PLRIYWMNSDLLHI-------TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CCEEEEECCCCccc-------cccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 4799999854 323 2578998888899999999999999 8999999864
No 106
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.88 E-value=5.1e-09 Score=60.27 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCEEEEeccc-------ccCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRGIAILTAGST-------KVTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~-------~~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
....|.|+++.+-...+.. .....+||... ++++|+|.+++.+|+|.|+|.+.+.
T Consensus 20 ~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 20 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 3468999864322111100 01234555543 3578999999999999999999874
No 107
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.87 E-value=1.8e-08 Score=56.84 Aligned_cols=48 Identities=33% Similarity=0.534 Sum_probs=37.1
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCC-CCCEEEEEEeecc
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-TDAGSYQCQIGTL 64 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~ 64 (78)
.+.++|+|++..+... ...++.+. ++.|.|.++.. +|+|.|+|.+.|.
T Consensus 33 ~p~i~W~k~~~~l~~~-----~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 33 PPTYRWLMNGTEIDDE-----PDSRYSLV-GGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CCEEEEEECCEECCCC-----CCCCEEEE-CCEEEEecCCccCCCEEEEEEEEcC
Confidence 4589999988776321 34567554 56899999875 9999999999986
No 108
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.86 E-value=1.5e-08 Score=59.45 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=42.9
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V 75 (78)
..|.|+|++..+...........|... .+..|.|.++..+|+|.|+|++.+.. ..+....|+|
T Consensus 41 ~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 41 LSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred ceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 479999976333221110001236644 56799999999999999999999864 6677776665
No 109
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.86 E-value=2.3e-08 Score=57.15 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=33.0
Q ss_pred CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
+|+.+. .+.+|+|++|+.+|+|.|.|.+.+.+ ..+..+.|+|
T Consensus 49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 455553 56899999999999999999999765 5566666665
No 110
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.85 E-value=2.4e-08 Score=55.88 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=29.3
Q ss_pred CeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103 41 GYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL 76 (78)
Q Consensus 41 ~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~ 76 (78)
..+|.|.+++.+|+|.|+|.+.+.. ..+..+.|+|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 4689999999999999999999753 55666676663
No 111
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.85 E-value=1.1e-08 Score=56.82 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=37.2
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
..+.|+|++..|.. ...+|.|.++ .+|+|.|+|++.+. ..+..++|+|
T Consensus 31 ~~~~W~kng~~l~~--------------~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~V 78 (78)
T cd05752 31 NSTQWYHNGKLLET--------------TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLEV 78 (78)
T ss_pred ccEEEEECCEEeec--------------cCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEeC
Confidence 35899999877621 3468999999 99999999999874 6666666654
No 112
>KOG4221|consensus
Probab=98.84 E-value=1.3e-08 Score=78.39 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=55.4
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
+||+|.. .|.|+|++..|..+ +.|+.+....+|.|.+++..|+|.|+|.+.+. ......+.|+|+.
T Consensus 261 vs~~p~p--~v~Wlrng~~i~~d------s~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a 327 (1381)
T KOG4221|consen 261 VSGVPKP--SVKWLRNGEKISVD------SYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA 327 (1381)
T ss_pred ecCCCCC--ceEEeeCCeeeeec------ceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEc
Confidence 5667665 88999998888753 36888888899999999999999999999975 5778888888874
No 113
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.84 E-value=7.9e-08 Score=51.35 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.2
Q ss_pred CCcEEEEEeC-CEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103 10 KNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V 75 (78)
....+.|+++ ...+. .+.|+.+... .+|.|.+++.+|+|.|+|.+.+.. .....+.|.|
T Consensus 22 ~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 22 PPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 4578999997 65553 3567777633 799999999999999999999653 4455566655
No 114
>smart00409 IG Immunoglobulin.
Probab=98.84 E-value=7.9e-08 Score=51.35 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.2
Q ss_pred CCcEEEEEeC-CEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103 10 KNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V 75 (78)
....+.|+++ ...+. .+.|+.+... .+|.|.+++.+|+|.|+|.+.+.. .....+.|.|
T Consensus 22 ~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 22 PPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 4578999997 65553 3567777633 799999999999999999999653 4455566655
No 115
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.82 E-value=1.5e-08 Score=56.38 Aligned_cols=54 Identities=33% Similarity=0.473 Sum_probs=39.2
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
..+.+.|+|++..+. .+. ...+.+|.|.+++.+|+|.|+|.+.|. +..+..++|
T Consensus 30 ~~~~i~W~~~~~~~~---------~~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 30 PAYTLVWTRVGGGLP---------SRA-MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCcEEEEEECCCcCC---------Ccc-cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 357899999664332 122 224579999999999999999999986 466666654
No 116
>KOG3513|consensus
Probab=98.82 E-value=1.8e-08 Score=76.90 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=54.2
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
++|-|. +.+.|+|++..|..+ ..++|+.+. ++.|+|++|+.+|+|.|.|.+.|+ +..-..+.|.|+.
T Consensus 355 a~g~P~--p~v~WlkNg~pl~~~----~r~~~~~i~-~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 355 ASGKPN--PTVKWLKNGEPLEPA----ERDPRYKID-DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA 422 (1051)
T ss_pred ecCCCC--CceEEeeCCeecCcc----CCCcceEEe-CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence 345555 488999999887532 356778664 679999999999999999999998 5778999999874
No 117
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.80 E-value=3.6e-08 Score=56.82 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=39.0
Q ss_pred CCcEEEEEeCC-----EE-EEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRGI-----AI-LTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~~-----~~-l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
....+.|+|.. .. +..... .....+||++. ..++|.|.+++.+|+|.|.|.+.+.
T Consensus 26 ~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 26 TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 45689999821 22 222111 11357899875 4689999999999999999999864
No 118
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.80 E-value=7e-08 Score=54.28 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=29.4
Q ss_pred CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103 41 GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL 76 (78)
Q Consensus 41 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~ 76 (78)
..+|.|.+++.+|+|.|+|.+.+.. .......|.|.
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 4689999999999999999999863 55666666663
No 119
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.79 E-value=5.2e-08 Score=55.46 Aligned_cols=57 Identities=25% Similarity=0.490 Sum_probs=40.0
Q ss_pred CCcEEEEEeC-----CEEEE-ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103 10 KNYVLAWKRG-----IAILT-AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP 66 (78)
Q Consensus 10 ~~~~v~W~k~-----~~~l~-~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~ 66 (78)
....+.|.|. ...|. .+.......+|+++. ...+|+|.+++.+|+|.|.|.+...+.
T Consensus 21 ~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 88 (98)
T cd05716 21 RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDGD 88 (98)
T ss_pred CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCCC
Confidence 4568899982 23332 122122346899875 347999999999999999999987553
No 120
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.79 E-value=5.1e-08 Score=57.61 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.6
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.+.+|.|.+++.+|+|.|+|.+.+.+
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCC
Confidence 46899999999999999999999754
No 121
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.79 E-value=5.9e-08 Score=66.22 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=45.1
Q ss_pred EeccCCC-CcEEEEEeCCEEEEecccccCCCCCEEEE-----------cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103 4 LSGLPDK-NYVLAWKRGIAILTAGSTKVTPDKRIQLV-----------DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71 (78)
Q Consensus 4 ~~~~~~~-~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----------~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~ 71 (78)
++|.|.. +..|.|+|++..|...+. ..++|+.+. ....|+|.+|+.+|+|.|+|.|.|.......+
T Consensus 244 a~g~P~~~~~~v~W~kng~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~~ 321 (326)
T PHA02785 244 VSLRPPTTDADVFWISNGMYYEEDDE--DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKTV 321 (326)
T ss_pred EECCCCCCCceEEEEECCEECCCcCC--CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEee
Confidence 4566643 368999999887753211 112344332 13689999999999999999999976444444
Q ss_pred E
Q psy14103 72 T 72 (78)
Q Consensus 72 ~ 72 (78)
+
T Consensus 322 ~ 322 (326)
T PHA02785 322 T 322 (326)
T ss_pred e
Confidence 3
No 122
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.78 E-value=4.5e-08 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.4
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
++.+|+|.+++.+|+|.|+|.+.+.+
T Consensus 78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 78 KDASIVIHNLQFTDNGTYTCDVKNPP 103 (116)
T ss_pred CeeEEEEeeCCcccCEEEEEEEEeCC
Confidence 35899999999999999999999764
No 123
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.78 E-value=7.4e-08 Score=54.61 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=41.8
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEE
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~ 74 (78)
...+.|++++..+. .+.|+..... .|.|.+++.+|+|.|.|.+...+.....+.+.
T Consensus 24 ~A~v~W~~ng~~l~-------~~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~ 79 (85)
T cd05872 24 LASPVWLFNGTPLN-------AQFSYRVGTD-GLLILVTSPEHSGTYRCYSEEEGFQQLVASYS 79 (85)
T ss_pred CccEEEEECCcccC-------CCcceEEeCC-CCEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence 34899999887763 4578866554 57799999999999999999766554444433
No 124
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.74 E-value=6.8e-08 Score=63.28 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=44.3
Q ss_pred CCCcEEEEEeCCEEEEecc--cc--c--CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103 9 DKNYVLAWKRGIAILTAGS--TK--V--TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL 76 (78)
Q Consensus 9 ~~~~~v~W~k~~~~l~~~~--~~--~--~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~ 76 (78)
..++.|.|+|++.+..... .. . ....|+ ...+++|.|.+++.+|+|.|+|++.+.. ..+..+.|.|.
T Consensus 60 ~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 60 ITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred CCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe
Confidence 3567999999764432211 10 0 011122 1236799999999999999999999863 66777777764
No 125
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.74 E-value=9.6e-08 Score=48.59 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=34.7
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
...+.|+|+...+. ........+..|.|.+++.+|+|.|+|.+.+.
T Consensus 16 ~~~v~W~~~~~~~~--------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 16 VPNITWLKDGKPLP--------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCeEEEEECCEECC--------CCCEEecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 45799999776553 11222336679999999999999999999863
No 126
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.73 E-value=6.5e-09 Score=54.66 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=30.0
Q ss_pred CCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cC----eEEEEccCCCCCCEEEEEEe
Q psy14103 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DG----YNLQITDLQTTDAGSYQCQI 61 (78)
Q Consensus 8 ~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~----~sL~I~~v~~~D~G~Y~C~~ 61 (78)
......++|+|++..+... ...... .. ..|.|.+++.+|+|.|+|+|
T Consensus 13 ~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 13 GPPPTTVTWSKNGQSLPEG-------STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp SSSTSEEEEEETTTTTSEE-------EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCCCcEEEEEECCccccCc-------ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 3455789999965332111 011111 11 14999999999999999986
No 127
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.72 E-value=1.5e-07 Score=54.60 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=45.3
Q ss_pred cCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCCCCC-CEEEEEEeecc-CCceEEEEEE
Q psy14103 7 LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQTTD-AGSYQCQIGTL-EPKEITHTLE 74 (78)
Q Consensus 7 ~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~L~ 74 (78)
.|.+ ..|.|..+...|..+ .++||.+. ....|.|.++..+| .|.|.|.+.|. +..+..++|+
T Consensus 28 ~P~P-~~i~W~w~~~~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L~ 98 (98)
T cd05898 28 TPPP-DRIAWAWKENVLESG-----TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE 98 (98)
T ss_pred CCCC-cEEEEEEccccccCC-----CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEeC
Confidence 4443 357888766666432 35799886 23689999999877 89999999987 6777777763
No 128
>KOG4194|consensus
Probab=98.72 E-value=2e-08 Score=73.74 Aligned_cols=68 Identities=22% Similarity=0.465 Sum_probs=53.7
Q ss_pred eEeccCCCCcEEEEEeCCEE-EEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 3 YLSGLPDKNYVLAWKRGIAI-LTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
+++|.|.+ .|.|.|++.. .++ ....|..+. ++-.+.|.||.++|+|.|+|.+.+. +..+..++|.|.-
T Consensus 635 aAtG~P~P--eIawqkdggtdFPA-----A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e 705 (873)
T KOG4194|consen 635 AATGHPRP--EIAWQKDGGTDFPA-----ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE 705 (873)
T ss_pred eccCCCCc--ceeehhcCCCCCch-----hhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence 56788776 7899996532 332 345677766 6678999999999999999999976 6889999999863
No 129
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.72 E-value=7.8e-08 Score=54.81 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=43.6
Q ss_pred CCCcEEEEEeC-----CEEEE--ecc-----cccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC--CceE
Q psy14103 9 DKNYVLAWKRG-----IAILT--AGS-----TKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEI 69 (78)
Q Consensus 9 ~~~~~v~W~k~-----~~~l~--~~~-----~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~ 69 (78)
.....+.|.+. ...+. ... ......+|+.+. .+++|.|.+++.+|+|.|.|++.... ....
T Consensus 29 ~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~ 108 (114)
T PF07686_consen 29 SNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGN 108 (114)
T ss_dssp SSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEE
T ss_pred CCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECC
Confidence 45578999982 12222 111 112345677765 35789999999999999999999763 4445
Q ss_pred EEEEEE
Q psy14103 70 THTLEI 75 (78)
Q Consensus 70 ~~~L~V 75 (78)
...|.|
T Consensus 109 ~~~L~V 114 (114)
T PF07686_consen 109 GTKLTV 114 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEC
Confidence 555554
No 130
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.69 E-value=1.8e-07 Score=53.30 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
....+.|+|. .. ++...... ....+||++. ...+|+|++++.+|+|.|.|.+.+.
T Consensus 21 ~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 21 SGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 3467999871 12 23322111 1235799876 4578999999999999999998753
No 131
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.68 E-value=1.5e-07 Score=54.73 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCcEEEEEeC-----CEEE-Eecccc-----cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRG-----IAIL-TAGSTK-----VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~-----~~~l-~~~~~~-----~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
....|.|+|. .+.| ...... ....+||.+. ...+|.|.+++++|+|.|+|.+...
T Consensus 25 ~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 25 GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 3468999983 1233 222111 1235799875 3578999999999999999998864
No 132
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.67 E-value=1.1e-07 Score=54.29 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=39.4
Q ss_pred CCcEEEEEeCC-----E-EEEeccc----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103 10 KNYVLAWKRGI-----A-ILTAGST----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP 66 (78)
Q Consensus 10 ~~~~v~W~k~~-----~-~l~~~~~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~ 66 (78)
....+.|+|.. . ++..... .....+|+++. .+.+|+|.+++.+|+|.|.|.+.+.+.
T Consensus 20 ~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 20 SSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 45689999821 2 2222211 12345788775 457999999999999999999997543
No 133
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.66 E-value=6.2e-08 Score=54.16 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=38.5
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
...+.|+|++..+.. ......|.|.+++.+|+|.|+|.+.+.. ..+...+|+|
T Consensus 29 ~~~~~w~k~g~~~~~------------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 29 VYKVTYYRDGKAKKY------------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred ceEEEEEECCeEccc------------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 457899998765421 1134689999999999999999999753 4455555554
No 134
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.66 E-value=3.4e-07 Score=51.38 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V 75 (78)
+...|.|+|++..|.........+.+|+. ..+|++..+..+|.+.|+|++.+.. ..+....|+|
T Consensus 13 P~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 13 PAATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred CCCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 44689999999888532111123444553 3589999999999999999999863 3455555554
No 135
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.65 E-value=1.8e-07 Score=50.63 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=25.5
Q ss_pred CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEe
Q psy14103 32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQI 61 (78)
Q Consensus 32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~ 61 (78)
..+||.+. ..++|+|.+++.+|+|.|.|.+
T Consensus 47 ~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 47 YKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred cCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 45799875 3489999999999999999974
No 136
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.62 E-value=2.4e-07 Score=54.17 Aligned_cols=56 Identities=20% Similarity=0.327 Sum_probs=38.3
Q ss_pred CCCcEEEEEeC-----C-EEEEecccc------cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 9 DKNYVLAWKRG-----I-AILTAGSTK------VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 9 ~~~~~v~W~k~-----~-~~l~~~~~~------~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+...+.|+|. . .++...... ....+||.+. ..++|+|.+++.+|+|.|.|.+...
T Consensus 27 ~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 27 FSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred ccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence 34578999982 1 223222111 1135799875 3579999999999999999998753
No 137
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.62 E-value=4.4e-07 Score=50.11 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred cEEEEEeCCEEEEecccc--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V 75 (78)
..|+|+|++..+..+... ..+++.+ ......|.|.....+|.|.|+|++.+.. +.+...+|+|
T Consensus 15 ~~v~W~~~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 15 AEIIWFRDGEVLDGATYSKELLKDGKR-ETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred CEEEEEECCEEccCceeeeeEecCCCe-EEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 489999998877543211 1122222 1122478898888899999999999752 5566666654
No 138
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=2.3e-07 Score=53.58 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=37.1
Q ss_pred CcEEEEEeC-----CEEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 11 NYVLAWKRG-----IAIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 11 ~~~v~W~k~-----~~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
...+.|+|. ...| ..... .....+||++. ..++|+|.+++.+|+|.|.|.+.+.
T Consensus 30 ~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 30 SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 467999972 2333 22211 11235799875 4478999999999999999998753
No 139
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.61 E-value=2.4e-07 Score=63.22 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=43.5
Q ss_pred CCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc----eEEEEEEEE
Q psy14103 9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK----EITHTLEIL 76 (78)
Q Consensus 9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~----~~~~~L~V~ 76 (78)
...+.|.|.|+.. + .+.|+....++.|.|.+|+.+|+|.|+|.+.+.. .. +..+.|.|.
T Consensus 153 ~~~~~i~W~k~~~-~--------~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 153 NVNADIIWSGHRR-L--------RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CCCceEEEccCCc-c--------CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 3457899988643 2 3578877777899999999999999999999753 32 334456553
No 140
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.59 E-value=6.9e-07 Score=57.17 Aligned_cols=68 Identities=19% Similarity=0.439 Sum_probs=47.5
Q ss_pred CCcEEEEEeC-CEEEEeccc--ccCC--CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc--C-CceEEEEEEEEe
Q psy14103 10 KNYVLAWKRG-IAILTAGST--KVTP--DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL--E-PKEITHTLEILG 77 (78)
Q Consensus 10 ~~~~v~W~k~-~~~l~~~~~--~~~~--~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~--~-~~~~~~~L~V~g 77 (78)
....|.|+|. ..+...+.. .+.+ .+|+.+. .+.+|+|.+|..+|+|.|+|.+..- + .++.++.|+|.+
T Consensus 44 ~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 44 NSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred ccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 4578999984 323222211 1211 2488742 5689999999999999999999965 4 667888888865
No 141
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.58 E-value=3.4e-07 Score=53.63 Aligned_cols=55 Identities=27% Similarity=0.452 Sum_probs=38.2
Q ss_pred CCcEEEEEeC---C--EEEE-eccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 10 KNYVLAWKRG---I--AILT-AGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 10 ~~~~v~W~k~---~--~~l~-~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
....+.|+|. . ..+. .... ....++||++. .+++|+|.+++.+|+|.|.|.+...
T Consensus 28 ~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 28 TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 3468999982 1 2222 2111 11345899875 3589999999999999999999854
No 142
>KOG4222|consensus
Probab=98.57 E-value=1e-07 Score=73.25 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=50.6
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEEE
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEIL 76 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V~ 76 (78)
++.|+|.|++..+... ..+|+.+...+.|.|.+|..+|+|.|.|.+.|. + -.+..++|.|.
T Consensus 161 eptvSw~Kdg~pl~~~-----~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 161 EPTVSWVKDGKPLDHY-----DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred CCcceeecCCCccccc-----cceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 4589999998887642 346777788999999999999999999999987 3 56788888875
No 143
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.46 E-value=1.2e-06 Score=51.80 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=27.0
Q ss_pred CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+||++. ++.+|.|++++.+|+|.|.|.+...
T Consensus 66 ~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 66 RGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred cccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 3699884 3578999999999999999998754
No 144
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.46 E-value=2.1e-06 Score=46.03 Aligned_cols=50 Identities=14% Similarity=0.358 Sum_probs=36.8
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V 75 (78)
..+.|.++...+..+. ..|.|.+++.+|+|.|+|.+.+.. ..+..+.|+|
T Consensus 29 ~~~~w~~~~~~~~~~~--------------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 29 PQVQWYKNGSPINSSQ--------------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEEEEETTEEEEEES--------------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeeeeeeeeee--------------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 6799999887775321 117788999999999999999854 4455666554
No 145
>KOG4221|consensus
Probab=98.45 E-value=7e-07 Score=69.16 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=51.3
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG 77 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g 77 (78)
+.+.|.|+|+.+.+. .++|+.+..++.|.|.+++.+|.|.|.|.+.+.. ..+..+.|+|++
T Consensus 168 ~~p~i~w~kn~~pl~-------~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s 230 (1381)
T KOG4221|consen 168 PVPTIMWLKNDQPLP-------LDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLS 230 (1381)
T ss_pred cCceeEEeccccccc-------CCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecC
Confidence 345799999988664 4679999999999999999999999999999874 447888888863
No 146
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.44 E-value=4e-07 Score=54.94 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=30.5
Q ss_pred eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103 42 YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG 77 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g 77 (78)
.+|+|.+|+.+|+|.|+|++.+. +..+..++|+|..
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~ 37 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE 37 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence 37999999999999999999876 4677888888764
No 147
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.43 E-value=2.1e-06 Score=47.94 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=37.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL 73 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L 73 (78)
+.|.|.+ ..|.|.|++..+.. ++.. ....|.|.++ .|+|.|.|.+.|.. ..+..++|
T Consensus 22 a~G~P~P-~~I~W~k~g~~l~~---------~~~~-~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 22 AVGPPEP-VEILWWQGGSPLGD---------PPAP-SPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred eeeecCC-eEEEEEECCEECCC---------CCCC-CCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 3455543 15899999887632 2222 3358999887 58899999999873 33445554
No 148
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.36 E-value=3.4e-06 Score=48.84 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=26.7
Q ss_pred CCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103 33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
.+||.+. ..++|+|.+++.+|+|.|.|.+..
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 5789864 557899999999999999999874
No 149
>PHA03376 BARF1; Provisional
Probab=98.34 E-value=6.1e-06 Score=53.35 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCcEEEEEe----CC-EEEEeccc-----ccCCCCCEEE---EcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 10 KNYVLAWKR----GI-AILTAGST-----KVTPDKRIQL---VDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 10 ~~~~v~W~k----~~-~~l~~~~~-----~~~~~~R~~~---~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
....|.|+| +. ..+..... .+.-.+|+.+ .++.+|.|.+++++|.|.|+|.+....
T Consensus 42 ~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 42 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCC
Confidence 467999999 33 33433322 1234567777 378899999999999999999999653
No 150
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.25 E-value=3.1e-06 Score=49.09 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=26.0
Q ss_pred CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103 33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
++||++. ...+|+|.+++.+|+|.|.|....
T Consensus 58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 5789763 247899999999999999999864
No 151
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.23 E-value=9.4e-06 Score=47.98 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=25.9
Q ss_pred CCCEEEE--c---CeEEEEccCCCCCCEEEEEEeec
Q psy14103 33 DKRIQLV--D---GYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 33 ~~R~~~~--~---~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
.+||++. . ..+|+|.+++.+|+|.|.|.+..
T Consensus 62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 62 KGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 4799875 1 25899999999999999999864
No 152
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.22 E-value=8.2e-06 Score=45.72 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=41.9
Q ss_pred EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
+.|+.+....|+|+|++..+..+.. ....++.|++. ..|.|...+..|.|.|+|++.+..
T Consensus 22 a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 22 ATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred EeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCCCCEEEEEEeCC
Confidence 5666666689999998887754432 12345555553 367777777789999999999764
No 153
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.20 E-value=1.6e-05 Score=46.49 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=44.5
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
-+||... .+.|.++...+.... +..+.... ...|++..+..+|+|.|+|.+.|. ...+++..|.|.
T Consensus 28 eAYP~p~-~~~W~~~~~~l~~~~-----~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 28 EAYPKPE-HQQWIYMNRTLTNTS-----DHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EeCCCCe-eeEEEcCCcccCccc-----cceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 3466642 279999765543211 11121111 257999999999999999999986 477888888774
No 154
>PHA02633 hypothetical protein; Provisional
Probab=98.15 E-value=8e-06 Score=43.78 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=32.0
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL 76 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~ 76 (78)
+...|.|-++..+|+|.|.|.+.+.. ..+.+..|+|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 56789999999999999999999874 77788888774
No 155
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.14 E-value=1e-05 Score=40.71 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=36.9
Q ss_pred CCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.....+.|+++........................|.|.+++.+|+|.|.|.+.+..
T Consensus 10 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 10 PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 345789999966544321100001112223367899999999999999999998753
No 156
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.08 E-value=3.7e-06 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=22.4
Q ss_pred EcCeEEEEccCCCCCCEEEEEEeec
Q psy14103 39 VDGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 39 ~~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
..+.+|.|.+|..+|.|.|+|.+.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3567999999999999999999875
No 157
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.02 E-value=1.8e-05 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.3
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+..|.|.+|+.+|+|.|+|...+.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 4578999999999999999999864
No 158
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.92 E-value=0.00032 Score=39.50 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCcEEEEEeCCEEEEeccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103 10 KNYVLAWKRGIAILTAGST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG 77 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g 77 (78)
+...|.|+|++..+..... .....++|... .+|.+..-...|...|+|++.+.. ..+....|+|+-
T Consensus 13 P~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 13 PAATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred CCCEEEEEECCEECcCcccceeccCCCcEEE--EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 4468999999887753221 11233455544 478888888888899999999753 567788888864
No 159
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.87 E-value=2.5e-05 Score=52.32 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=39.4
Q ss_pred CcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
++...|.- ++..|. .++++++.+.+.|.+.+.+.+++|.|+|.+.-+
T Consensus 12 DP~y~W~GP~g~~l~-------gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLS-------GNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccC-------CCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 56788987 556663 567899999999999999999999999998854
No 160
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.78 E-value=0.00021 Score=39.85 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=39.7
Q ss_pred cCCCCcEEEEEeCCEEEEeccccc--CCC-CCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEE
Q psy14103 7 LPDKNYVLAWKRGIAILTAGSTKV--TPD-KRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEI 75 (78)
Q Consensus 7 ~~~~~~~v~W~k~~~~l~~~~~~~--~~~-~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V 75 (78)
+|. ..|+|+|++..|....... ..+ ..|++. .+|.|......|...|+|++.+.. ..+....|+|
T Consensus 12 ~P~--~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~--s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~ 83 (83)
T cd07705 12 KPA--ANIKWRKGDQELEGAPTSVLEDGNGKTFTVS--SSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV 83 (83)
T ss_pred cCC--CEeEEEECCEECCCcceeEEECCCCCEEEEE--EEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence 454 4899999987775332111 122 244333 367776667778899999999753 3344444443
No 161
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.76 E-value=0.00015 Score=43.30 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=41.6
Q ss_pred EeccCCCC-cEEEEEeC--CE--EEE----ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 4 LSGLPDKN-YVLAWKRG--IA--ILT----AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 4 ~~~~~~~~-~~v~W~k~--~~--~l~----~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.||....+ +.++|.|+ +. .+. .++......+||... +.-+|+|.+++.+|++.|.|.....
T Consensus 22 ~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~m 96 (115)
T cd05721 22 YTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIELM 96 (115)
T ss_pred ecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEeeec
Confidence 36666665 89999982 21 121 122221356788765 4578999999999999999987754
No 162
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.76 E-value=9.3e-05 Score=43.61 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103 33 DKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL 76 (78)
Q Consensus 33 ~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~ 76 (78)
+.||.+. ++.+|.|+.+|+.|+|.|.-++.+.......+...|.
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 5688876 8899999999999999999999976544455555554
No 163
>KOG4222|consensus
Probab=97.71 E-value=9.5e-05 Score=57.53 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=48.3
Q ss_pred CCCcEEEEEeC-CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 9 DKNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 9 ~~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
+..+.++|+|. .+.+-+.......+.|.++...++|+|.+|+.+|.|.|.|+..+. ......+.|.+
T Consensus 342 nP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 342 NPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred CCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEE
Confidence 44568999994 344444433446789999998889999999999999999997654 33333444433
No 164
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.68 E-value=0.0009 Score=36.36 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=40.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
++|.-+.+..|.|+|++..+..+... ...++.|++. ..|.|......+...|+|.+...
T Consensus 8 a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 8 VSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCCCEEEEEEEEc
Confidence 45666667899999988764433211 1245666654 36777776778889999999864
No 165
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.68 E-value=0.00057 Score=37.78 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=32.5
Q ss_pred cEEEEEeCCEEEEecccc--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 12 YVLAWKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..|+|+|++..+...... ...++.|++. ..|.+......|.+.|+|.+.+.
T Consensus 15 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 15 ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEEEcchhhCCCEEEEEEeCh
Confidence 499999988777522111 1123445443 25666666666778999999976
No 166
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.64 E-value=0.00061 Score=38.06 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=35.4
Q ss_pred cEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 12 YVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..|+|+|++..+...... ...++.|++. .+|.+..-...|...|+|++.+.
T Consensus 15 ~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 15 ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEEcccccCCCEEEEEEech
Confidence 899999998887543211 1244455544 36777766677889999999975
No 167
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.53 E-value=0.00075 Score=38.54 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=33.2
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF 78 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~ 78 (78)
+..+|.+..++..|+|..+|.+.-. ...+....+.|+||
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl~f 88 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVLAF 88 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEEeC
Confidence 5679999999999999999999754 35578888888886
No 168
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.53 E-value=0.00064 Score=38.61 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.3
Q ss_pred eEEEEccCCCCCCEEEEEEee
Q psy14103 42 YNLQITDLQTTDAGSYQCQIG 62 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~ 62 (78)
..+.|.+++.+|+|.|.|...
T Consensus 55 a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 55 ASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEecCCCcccCEEEEEEEE
Confidence 489999999999999999975
No 169
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.51 E-value=0.0016 Score=37.32 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=38.3
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+.|.-+.+..|+|+||+..+. +... ...|..|++.. .|.+. .++...|+|++...
T Consensus 23 ~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s--~l~~~---~~~~~~ysC~V~H~ 82 (93)
T cd05770 23 YVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLK--STEFT---PTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEE--EEEEC---CCCCCeEEEEEEEC
Confidence 3567677789999999998876 4321 23566665542 44444 56888899999964
No 170
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.50 E-value=0.00083 Score=38.45 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=40.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
++|.-+.+..|.|+|++..+..+.. ....++.|++. ..|.|..-.-.+...|+|.|...+
T Consensus 23 a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 23 ISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCCCeEEEEEEECC
Confidence 5676677899999998877643311 12345566654 356666555557789999999753
No 171
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.39 E-value=0.00088 Score=38.57 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
++|.-+.+..|.|+|++..+..+.. ....++.|++. ..|.+..-.-.+...|+|.+...+
T Consensus 26 ~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 26 INDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred EEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCCCeEEEEEEecC
Confidence 5666667799999998877753321 11236677664 356665555556789999999653
No 172
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.39 E-value=0.0022 Score=36.70 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=39.1
Q ss_pred eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++|.-+.+..|.|+|++..+..+.. ....|+.|++. -.|.+.. ++...|+|++...+
T Consensus 23 ~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 23 FVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred EEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEEC---CCCCeEEEEEEeCC
Confidence 35676667799999999887754321 23456777765 2455543 46679999999653
No 173
>KOG4194|consensus
Probab=97.38 E-value=0.00049 Score=51.32 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=44.4
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL 76 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~ 76 (78)
++..+.++.+.|+|+.++|.. .+|-.+. ++--|.+.++-.+|+|.|+|.+.+. +..-...++.|.
T Consensus 730 a~~~~a~pr~~W~k~d~pil~-------t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 730 AEGAPADPRLEWFKEDKPILI-------TERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred cCCCCCCccccccCCCCceEE-------eecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 344455688999997766543 2333333 5678889999999999999999975 444455555443
No 174
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.30 E-value=0.0042 Score=36.59 Aligned_cols=59 Identities=14% Similarity=0.308 Sum_probs=36.5
Q ss_pred EeccCCCCcEEEEEeCCEEEEeccccc--CCC-CCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKV--TPD-KRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~--~~~-~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~ 65 (78)
++|.-+.+..|+|+||+..+..+.... ..+ ..|++.. .|.+.. ...|.| .|+|++...+
T Consensus 30 a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S--~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 30 AHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTS--TVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEE--EEEEEC-ccccccCceEEEEEeCC
Confidence 456666678999999988875432221 123 2565532 455553 455555 4999999753
No 175
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.29 E-value=0.0031 Score=35.59 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=33.8
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++|..+.+..|+|+|++..+..+... ...+.-|++. ..|.| ..+|.+.|+|++....
T Consensus 22 ~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~--s~l~v---~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 22 HATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW--VTLEV---PPEDKARYSCRVEHSG 83 (93)
T ss_pred EEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE--EEEEE---CCCCCCEEEEEEEeCC
Confidence 367776777899999987533222110 0122233322 13333 3458999999998653
No 176
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.21 E-value=0.00049 Score=41.88 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCEEE-Eeccc-c-c--CCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103 10 KNYVLAWKRGIAIL-TAGST-K-V--TPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI 75 (78)
Q Consensus 10 ~~~~v~W~k~~~~l-~~~~~-~-~--~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V 75 (78)
.+..|.|+.++..+ .++.. . . ..-++..+. ++.+|.+...+.- .|+|+|.+.... ..+..+.|.+
T Consensus 45 ~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 45 SEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp GGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred ceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 46789999865444 32221 1 1 112333333 6788999998777 999999998643 5555555554
No 177
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.08 E-value=0.0066 Score=36.40 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=34.9
Q ss_pred eccCCCCcEEEEEeCCEEE------Eec----ccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 5 SGLPDKNYVLAWKRGIAIL------TAG----STKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l------~~~----~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
+|..+....|.|+|++... ..+ ......++.|++. ..|.|..-...+.+.|+|.+...
T Consensus 63 ~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 63 AGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred CCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEecCCccCCCCEEEEEEEcC
Confidence 4443444789999975321 111 1112345666554 36777766666778999999864
No 178
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.07 E-value=0.0077 Score=34.66 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=35.6
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
++|.-++...|+|+|++..+..+... ...++.|++. ..|.|..-+ ....|+|+|...+
T Consensus 25 a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 25 LENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred EEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEECchh--CCCeEEEEEEECC
Confidence 56666678999999998876554221 1223356554 355555433 2344999999643
No 179
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.06 E-value=0.014 Score=33.16 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=37.4
Q ss_pred eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++|.-+.+..|.|+|++..+..+.. ....|..|++.. .|.+. .++...|+|++...+
T Consensus 22 ~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s--~L~~~---~~~~~~ysC~V~H~~ 83 (94)
T cd05766 22 HVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILV--MLETT---PSRGDTYTCVVEHSS 83 (94)
T ss_pred EEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEE--EEEEc---CCCCCEEEEEEEeCC
Confidence 46777778899999999887654311 112444565542 34433 356779999999753
No 180
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.06 E-value=0.0022 Score=35.29 Aligned_cols=58 Identities=19% Similarity=0.384 Sum_probs=39.6
Q ss_pred eEeccCCCCcEEEEEeCCEEEEecccc---c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGSTK---V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++|.-+.+..|.|++++..+..+... . ..++.|++.. .|.+. ..+...|+|.|....
T Consensus 16 ~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 16 LVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS--SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE--EEEEE---TTTTGGEEEEEEETT
T ss_pred EEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE--EEEec---CCCCCEEEEEEEECC
Confidence 467777888999999988776443221 1 2567776654 45555 556668999999653
No 181
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.97 E-value=0.0079 Score=35.72 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=38.1
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccc---c-C-CCCCEEEEcCeEEEEccCCCCC-CEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTK---V-T-PDKRIQLVDGYNLQITDLQTTD-AGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~-~~~R~~~~~~~sL~I~~v~~~D-~G~Y~C~~~~~~ 65 (78)
++|.-+.+..|+|+|++..+..+... . . .++-|++. ..|.|....-.| ...|+|++...+
T Consensus 27 a~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 27 ATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEeC
Confidence 45666677999999998877654321 1 1 12455554 356666554434 689999999654
No 182
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.92 E-value=0.0059 Score=34.98 Aligned_cols=65 Identities=15% Similarity=0.405 Sum_probs=39.4
Q ss_pred eccCCCCcEEEEEeC--CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRG--IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V 75 (78)
.|.|.. .|+|+++ +..... .....++.|.+.. .|.+......|.-.|+|++.+.. ......+|.|
T Consensus 26 ~gkP~a--~ItW~~~~~~~~~~~--~~~~~~g~~tv~S--~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~V 95 (95)
T cd05719 26 NGKPPA--TISWETTLGGEAETQ--SKENPNGTVTVTS--EYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLNV 95 (95)
T ss_pred CCcCCC--EEEEEeCCCCcceeE--eecCCCCCEEEEE--EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEeeC
Confidence 344554 8899996 111110 1112445566553 67777777788889999999753 4556666554
No 183
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.83 E-value=0.0083 Score=34.89 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=34.6
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.|.|.....|.|+|+...+............+. ...+|++.--...|...|+|++...
T Consensus 27 g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~--~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 27 GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVN--APATITITVDREDHGANFSCETELD 84 (100)
T ss_pred CcCCCCcEEEEEeeCCEEcccceeccccCCCce--eEEEEEEecchhhCCcEEEEEEEec
Confidence 345666677999998888753221111111121 2346777655455555999999965
No 184
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.79 E-value=0.016 Score=33.16 Aligned_cols=60 Identities=13% Similarity=0.354 Sum_probs=36.6
Q ss_pred eEecc-CCCCcEEEEEeCC-EEEEeccc--ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 3 YLSGL-PDKNYVLAWKRGI-AILTAGST--KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 3 ~~~~~-~~~~~~v~W~k~~-~~l~~~~~--~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.++|. -+.+..|+|+|++ ..+..... ....|+.|++.. .|.+..-+-.+.-.|+|.|...
T Consensus 22 ~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 22 LVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS--TLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred EEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE--EEEeCHHHccCCCcEEEEEECC
Confidence 46788 6778999999975 33332211 123455565542 5555544334556899999965
No 185
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.74 E-value=0.0082 Score=34.48 Aligned_cols=61 Identities=11% Similarity=0.314 Sum_probs=37.5
Q ss_pred cEEEEEeCCE-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103 12 YVLAWKRGIA-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI 75 (78)
Q Consensus 12 ~~v~W~k~~~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V 75 (78)
..|+|+++.. .... ......+++|++.. .|.+..-...|...|+|++.+.. +......|.|
T Consensus 31 a~IsW~~~~~g~~~~-~~~~~~~gt~tv~S--~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~v 95 (95)
T cd07703 31 ARISWSSTLGGNANT-TSKENGDGTVTVTS--EYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLSV 95 (95)
T ss_pred cEEEEEcCCCCCeeE-EEEeCCCCCEEEEE--EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEeC
Confidence 4899998621 1110 11123456676654 67777777788889999999753 4455555543
No 186
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.61 E-value=0.0099 Score=34.00 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=37.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccc---c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTK---V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
+.|.-++...|+|+|++.. ..+... . ..++.|++.. .|++...+-.....|+|++...+
T Consensus 25 a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s--~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 25 ATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS--QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE--EEEEeHHHcCCCCcEEEEEEeCC
Confidence 5676677899999999886 433211 1 2367776643 56555443233667999999754
No 187
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.57 E-value=0.0098 Score=34.38 Aligned_cols=61 Identities=11% Similarity=0.250 Sum_probs=37.4
Q ss_pred eEeccCCCCcEEEEEeCCEEEEeccc---ccCC----CCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTP----DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~----~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++|.-+.+..|+|+|++..+..+.. .... ++-|++. ..|.|..-.-.+...|+|+|....
T Consensus 24 ~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 24 LVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred EEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCCCcEEEEeEeCC
Confidence 36776677899999999877643211 1111 3556554 256664333346678999999653
No 188
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.31 E-value=0.015 Score=33.71 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=34.1
Q ss_pred EeccC-CCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103 4 LSGLP-DKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~-~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~ 65 (78)
++|+- +++..|.|.+++.. .+.. ....|+-|++.. .|.|. .+.-..| .|+|+|...+
T Consensus 28 V~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S--~L~v~-~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 28 LSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSS--VLPGC-AEEWNKGEPFACTVTHPE 89 (99)
T ss_pred EeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEE--EEEeC-HHHhcCCCeEEEEEECCC
Confidence 67766 77899999997643 1111 112456666653 55554 2233334 4999999754
No 189
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.09 E-value=0.054 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeec
Q psy14103 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 14 v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
+.|.|+...+.- .+..+ +..+++ ++.|.|+|.+.+
T Consensus 21 i~W~~n~~~~~g------~~~~~-~~~~~~--------e~~G~Y~C~~~~ 55 (65)
T cd07692 21 IKWKKNDQVSQG------SDEKY-LSLNHF--------SSSGYYHCTADN 55 (65)
T ss_pred ceEEeCCccCCC------CCceE-EeeccC--------CCCceEEEEeCC
Confidence 899998754421 11222 233333 899999999864
No 190
>KOG1480|consensus
Probab=95.93 E-value=0.0026 Score=48.27 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=42.3
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG 77 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g 77 (78)
..+.|+|+..++. ++..+....+..|.|..+..+|.|+|+|++.+-. ...+.+.+-|.|
T Consensus 160 ae~~w~k~e~~~~-------pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 160 AEVEWLKNEVVID-------PDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG 222 (909)
T ss_pred hhhhccccCCCCC-------ccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence 4678888776653 3555656678899999999999999999999752 333444444433
No 191
>PHA02982 hypothetical protein; Provisional
Probab=95.47 E-value=0.093 Score=34.73 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=28.1
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEI 75 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V 75 (78)
+..+|+|.++..+..|.|+|++..+. .. +-...|.|
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCCchheeheeeeE
Confidence 66899999999999999999999864 33 33455554
No 192
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.33 E-value=0.047 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=28.3
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeec
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
..|.|+|+..+... .+.+|.+-.+...=.|.|.|++.+
T Consensus 17 tsi~W~kG~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 17 TNITWKKGKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CcEEEecCcccccc--------------cccEEeccCcccCCCcceEecCcc
Confidence 46899995554321 156788888888889999999876
No 193
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.93 E-value=0.15 Score=29.54 Aligned_cols=67 Identities=13% Similarity=0.289 Sum_probs=40.7
Q ss_pred eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI 75 (78)
Q Consensus 5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V 75 (78)
.|-|. ..|+|.++..-...-......++.|++.. +|.+..-...|.-.++|++.... .......|+|
T Consensus 28 ~gkPa--a~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~~~L~V 97 (97)
T cd07704 28 EGRPA--ADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIWVPSRHANGHPLTCVVSHPALQQDFRITHILNV 97 (97)
T ss_pred CCccC--CEeEEeCCCCCccceeeecCCCCCEEEEE--EEEEEeCHHHCCcEEEEEEeCcccCCCceeeEEeeC
Confidence 34444 48899974211110011123566777765 67777777789999999999652 5556666654
No 194
>PHA03042 CD47-like protein; Provisional
Probab=94.80 E-value=0.31 Score=33.21 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL 73 (78)
Q Consensus 10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L 73 (78)
.+..|.|+.++..+...+.+ .+ .+|.+... ..=.|+|||++.+.- ..+....|
T Consensus 49 ~~~~V~Wkf~~~~If~~n~t----n~------aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 49 SNIHINWKFNNKVIFKKNNT----NT------SSLKFNFS-KNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred cceEEEEEeCCeeEEEecCC----cc------eEEEEecc-ccCCCceeEEEeecccCccEEEEE
Confidence 56789999877665432211 11 45666554 334899999999642 33334444
No 195
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=94.74 E-value=0.34 Score=26.48 Aligned_cols=58 Identities=10% Similarity=0.218 Sum_probs=35.2
Q ss_pred EeccCCCCcEEEEEeCCEEE---EecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 4 LSGLPDKNYVLAWKRGIAIL---TAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l---~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
..|.|. ..|+|+.++..+ .........++.|.+.. .|.+..-...+...++|++.+..
T Consensus 24 ~~~~P~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S--~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 24 SGGYPP--PQITWYLDGGPVVASNTTQSSSPDNGLFTVSS--TLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp EEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEEE--EEEEETTGGGTTEEEEEEEEETT
T ss_pred CCeECC--eEEEEEECCCceeeeeeeeeeccCCCcceEEE--EEEEEcChHHCCeEEEEEEECCc
Confidence 345554 589999976554 11111224555665543 56665555667888899999864
No 196
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.44 E-value=0.13 Score=37.47 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI 75 (78)
Q Consensus 32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V 75 (78)
.++|.++. |.+|.|.+++.+|+|.|+-.+...+ .+...+.|.|
T Consensus 115 ~~~rvs~~-n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 115 WPPRVAVV-NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cCcceeEe-cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 46788775 6789999999999999999975432 3344455554
No 197
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.04 E-value=0.16 Score=36.58 Aligned_cols=36 Identities=11% Similarity=0.338 Sum_probs=30.1
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V 75 (78)
.++++.+.|+..+|+|.|.|........+-.+.++|
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~v 114 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILV 114 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEE
Confidence 468899999999999999999987777776666655
No 198
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=92.89 E-value=0.41 Score=27.90 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCE-EEEEEeec
Q psy14103 6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAG-SYQCQIGT 63 (78)
Q Consensus 6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G-~Y~C~~~~ 63 (78)
++|.+...|.|+|+...+......-..+.+ +.. ....+++... .+|-| .|+|++.-
T Consensus 27 v~P~~~l~v~LlkG~~~l~~~~f~~~~~~k-s~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 27 VYPFDRLEIELLKGETLLPSKSFLEDMDKK-SLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred cccCCceEEEEecCcceecccccccccccC-CCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 456678899999987776543221000000 001 1134444443 66666 99999984
No 199
>KOG4597|consensus
Probab=91.27 E-value=0.61 Score=34.25 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=42.4
Q ss_pred CcEEEEEe---CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103 11 NYVLAWKR---GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI 75 (78)
Q Consensus 11 ~~~v~W~k---~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V 75 (78)
...|.|-+ +...+..... ..-.|..+.+..-|.|-+....|+|.|+|.+.+. +.....+.+.+
T Consensus 225 ~r~V~c~qv~anr~~vv~~~n--q~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 225 YRVVTCEQVFANRENVVMRPN--QTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred CceeeeehhhccccceeecCc--cccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 35889976 3333222211 1224555567789999999999999999999986 46666666644
No 200
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.37 E-value=0.68 Score=33.94 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=24.8
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~ 70 (78)
++-+|++.|++.+++|.|.|++.-.+..+..
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW 361 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAW 361 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCeeeee
Confidence 4458999999999999999999955544433
No 201
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.19 E-value=0.3 Score=35.14 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103 31 TPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI 75 (78)
Q Consensus 31 ~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V 75 (78)
.++.-|.+. ...+|+|.+|..+..|-|+|++..+- ..+....|-|
T Consensus 326 ~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 326 AEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred ccCCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence 466677665 35799999999999999999999753 4444444443
No 202
>PHA03286 envelope glycoprotein E; Provisional
Probab=89.59 E-value=0.88 Score=33.13 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=23.4
Q ss_pred eEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103 42 YNLQITDLQTTDAGSYQCQIGTLEPKEIT 70 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~ 70 (78)
.+|.+.|++.+|+|.|.|.+.-.+..+..
T Consensus 307 ~nL~f~nA~~s~SGLYVfVl~yNGH~eAW 335 (492)
T PHA03286 307 PSFRLANAQPTDAGLYVVVALYNGRPLAW 335 (492)
T ss_pred CceeecCCCcccCceEEEEEEECCcceee
Confidence 37999999999999999999955544433
No 203
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.62 E-value=0.89 Score=32.81 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=22.2
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~ 70 (78)
+.-.|++.|++.+++|.|.|.+.-.+..+..
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~nghv~aW 297 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYNGHVEAW 297 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEETTEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEECCeeeee
Confidence 4568999999999999999999966644433
No 204
>PHA03283 envelope glycoprotein E; Provisional
Probab=85.81 E-value=2.1 Score=31.75 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=25.4
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~ 71 (78)
+.-.|.+.|++.+++|.|.|.+.-.+..+...
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~ 344 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYNGHPEAWT 344 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEECCeeeeeE
Confidence 44689999999999999999999655444333
No 205
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=85.77 E-value=3.5 Score=29.00 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=14.2
Q ss_pred cCCCCCCEEEEEEeeccCC
Q psy14103 48 DLQTTDAGSYQCQIGTLEP 66 (78)
Q Consensus 48 ~v~~~D~G~Y~C~~~~~~~ 66 (78)
.|...|...|+|+|...+-
T Consensus 287 ~v~~~~~~~Y~C~V~Hsgl 305 (338)
T PHA02865 287 RVPTDMSNQIVCVVFHSTL 305 (338)
T ss_pred EeCCCCCCCcEEEEEeCCC
Confidence 3456788889999996543
No 206
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=83.27 E-value=5.7 Score=25.10 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=24.8
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL 73 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L 73 (78)
...-|+|++.+.+|+|.|.=.+.-+ .+......+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~ 156 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRL 156 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEE
Confidence 4456999999999999999988844 344433333
No 207
>PHA03281 envelope glycoprotein E; Provisional
Probab=82.33 E-value=3.3 Score=31.06 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=25.2
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~ 71 (78)
+.-.|.+.+++.+++|.|.|.+.-.+..+...
T Consensus 473 n~vdL~F~nApasaSGLYVfVl~yNGHVeAWt 504 (642)
T PHA03281 473 GGSALKFVDAAESLSGLYVFIIHFNGHVEAVA 504 (642)
T ss_pred CCcceEeccCCcccCceEEEEEEECCeeeeeE
Confidence 44579999999999999999999655444333
No 208
>KOG3515|consensus
Probab=82.32 E-value=4.5 Score=31.27 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCCCcEEEEEeCCEEEEeccc-ccC----CCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 8 PDKNYVLAWKRGIAILTAGST-KVT----PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 8 ~~~~~~v~W~k~~~~l~~~~~-~~~----~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..+.+.+.|..+.+....... ... .-+.+. ....-|.+.....+|.|.|+|.+.+.
T Consensus 125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY-TEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred CCCCcceeeeeccEEeecccCCcccccccccCcee-ccccceeeEEEEecCCceeEcccccc
Confidence 445567889876655443221 000 011110 23456888888899999999999974
No 209
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.80 E-value=0.44 Score=34.33 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG 77 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g 77 (78)
+++.|.|.+++.+|+|.|+-...+.. .....+.|.|.+
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 56789999999999999999987543 334445556654
No 210
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=81.30 E-value=7.2 Score=21.58 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccCCceEEEE
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT 72 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~ 72 (78)
....+.......+|+|...|.+....+......
T Consensus 41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~ 73 (80)
T PF05790_consen 41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESK 73 (80)
T ss_dssp ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEE
T ss_pred cceEEEEecCCCCCCEEEEEEEcCCceEEEEEE
Confidence 444566677788999999999954344433333
No 211
>PHA03286 envelope glycoprotein E; Provisional
Probab=80.33 E-value=8.9 Score=28.16 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=32.7
Q ss_pred CCCCEEEE--cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103 32 PDKRIQLV--DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG 77 (78)
Q Consensus 32 ~~~R~~~~--~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g 77 (78)
.+++|-+. ....|+|.++..+++|.|+-...++. ......-|.|.|
T Consensus 115 n~p~~~I~t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 115 YIPNVIIGTGRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred cCCceEeccCCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 34555444 34689999999999999999988763 344555556654
No 212
>KOG3611|consensus
Probab=79.09 E-value=4.9 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.+++......+.|.+..+|..|.|.|.|.+....
T Consensus 602 ~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 602 QRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 3455555556779999999999999999998654
No 213
>PHA03240 envelope glycoprotein M; Provisional
Probab=78.00 E-value=1.6 Score=29.00 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCEEEE-cCeEEEEccCCCCCCEEEE
Q psy14103 33 DKRIQLV-DGYNLQITDLQTTDAGSYQ 58 (78)
Q Consensus 33 ~~R~~~~-~~~sL~I~~v~~~D~G~Y~ 58 (78)
+.|+... .|.+|.|.+|..+|.|+|.
T Consensus 95 nt~i~y~C~NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 95 NSFILYECHNSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred CCceEEEeccceEEEEEEeecCcchhh
Confidence 4555444 7899999999999999994
No 214
>PHA03283 envelope glycoprotein E; Provisional
Probab=76.81 E-value=14 Score=27.66 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=29.0
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG 77 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g 77 (78)
+...|+|.++..+++|.|+-...++. .......|.|.+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 45789999999999999999988764 344455556655
No 215
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=70.02 E-value=10 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCCEEEE-cCeEEEEccCCCCCCEEEEEEee
Q psy14103 32 PDKRIQLV-DGYNLQITDLQTTDAGSYQCQIG 62 (78)
Q Consensus 32 ~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~ 62 (78)
-.+||.+. .+-+|.|..-..+|+|-|.-...
T Consensus 92 ledgY~FhlEnLsL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 92 LEDGYKFHLENLSLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp SSSSEEEETTTTEEEETT--GGG-EEEEEEEE
T ss_pred cccccEEecccceeehhccccccCceEEEEee
Confidence 45688876 78899999999999999976544
No 216
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=69.56 E-value=8.4 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=18.4
Q ss_pred eEEEEccCCCCCCEEEEEEeeccC
Q psy14103 42 YNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
-.++++.|...-+|.|+|.+....
T Consensus 93 i~mt~hQVN~DGaGP~~C~iD~tg 116 (184)
T PF11327_consen 93 ISMTIHQVNADGAGPFTCDIDETG 116 (184)
T ss_pred EEEEEEEecCCCCcCeEEEECCCC
Confidence 356677777777999999998653
No 217
>PHA03290 envelope glycoprotein I; Provisional
Probab=65.18 E-value=21 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.9
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..--|+|++.+.+|+|.|.=.+.-+
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeC
Confidence 4567999999999999999998854
No 218
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=65.09 E-value=18 Score=23.82 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=30.8
Q ss_pred EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-----cCeEEEEccCCC--CCCE--EEEEEeecc
Q psy14103 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQT--TDAG--SYQCQIGTL 64 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~--~D~G--~Y~C~~~~~ 64 (78)
+.+.|.+...+.|.=++.+... ....... ..+...|++..+ ...| .|+|.+..-
T Consensus 98 A~CVP~~~v~l~W~v~d~~~~~-------~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GY 160 (211)
T PF02124_consen 98 ARCVPRGNVTLRWSVGDDPSPA-------PAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGY 160 (211)
T ss_pred cceeeCCCeEEEEEECCccCCC-------CCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeC
Confidence 3577888889999864433221 1111111 335555665543 3445 899998853
No 219
>PHA03289 envelope glycoprotein I; Provisional
Probab=64.08 E-value=21 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.5
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.+--|+|++.+.+|+|.|.=.+.-+
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeC
Confidence 3457999999999999999998854
No 220
>KOG3515|consensus
Probab=61.17 E-value=13 Score=28.84 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred cEEEEEeCCEEEEecccccCCCCCEEEEcCeE-EEEccCCCCCCEEEEEEeeccC
Q psy14103 12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN-LQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~s-L~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
..+.|.+..--+.. ....++.+....- +.+.+|+.+|.|.|.|.+.+..
T Consensus 432 ~~~~w~~~~~~~~~-----~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~ 481 (741)
T KOG3515|consen 432 RTFYWTFRLYKLSQ-----VDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSP 481 (741)
T ss_pred cchhheecceeccc-----ccCceEEeeccccccccceeeeccCCcceeeeccCC
Confidence 56788775433321 1234555554433 3477899999999999999853
No 221
>PHA03292 envelope glycoprotein I; Provisional
Probab=59.91 E-value=36 Score=24.59 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
...-|.|++-+.+|+|.|.=.+.-+
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ld 150 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLD 150 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeC
Confidence 4578999999999999999998855
No 222
>COG5475 Uncharacterized small protein [Function unknown]
Probab=56.75 E-value=12 Score=19.63 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.6
Q ss_pred eeEeccCC-CCcEEEEEeC
Q psy14103 2 MYLSGLPD-KNYVLAWKRG 19 (78)
Q Consensus 2 ~~~~~~~~-~~~~v~W~k~ 19 (78)
|-+||++. +.+...|++.
T Consensus 20 Mtvs~~ss~Gmy~C~Wf~g 38 (60)
T COG5475 20 MTVSGYSSDGMYECRWFDG 38 (60)
T ss_pred EEEeccccCCeEEEEEecC
Confidence 78899988 7899999984
No 223
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=56.56 E-value=13 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=17.1
Q ss_pred eEeccCCCCcEEEEEeCCEEEEe
Q psy14103 3 YLSGLPDKNYVLAWKRGIAILTA 25 (78)
Q Consensus 3 ~~~~~~~~~~~v~W~k~~~~l~~ 25 (78)
|+.|+|+.++.+.-+||+.++.+
T Consensus 88 yf~~~pPSSPS~ALfKdGelvh~ 110 (136)
T PF06491_consen 88 YFEPYPPSSPSIALFKDGELVHF 110 (136)
T ss_dssp TSTTS---SSEEEEEETTEEEEE
T ss_pred hcCCCCCCCchheeeeCCEEEEE
Confidence 67899999999999999988754
No 224
>PHA03189 UL14 tegument protein; Provisional
Probab=49.68 E-value=24 Score=24.81 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
...++.+. .-.+|++ ++..+-+|.|.|...|..
T Consensus 119 ~~~~W~Fedlg~aq~ltLtF-~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 119 PEASWKFEDLGAAQRLTLTF-RVSTSTAGMYECVLRNET 156 (348)
T ss_pred ccceeeeecccceeEEEEEE-EEEecccceEEEEecccc
Confidence 44555544 2344554 355788999999999864
No 225
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.50 E-value=44 Score=17.77 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.7
Q ss_pred cCeEEEEccCCCCCCE
Q psy14103 40 DGYNLQITDLQTTDAG 55 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G 55 (78)
.+-.|+|.+|....+|
T Consensus 48 n~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 48 NGQNLTLINVTKTYNG 63 (63)
T ss_pred cCCeEEEEEecccccC
Confidence 4668999999887765
No 226
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=45.02 E-value=12 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCEEEEcCeEEEEccCCCCCCEEEEEE
Q psy14103 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60 (78)
Q Consensus 32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~ 60 (78)
...+|.+.++.+-.|.+|...|+|.|+-.
T Consensus 63 g~n~fcI~den~qEILSvt~dda~~YTV~ 91 (292)
T PRK15372 63 GENYFCILDEDSQEILSVTLDDVGNYTVN 91 (292)
T ss_pred CCceEEEEcCCCceeEEEEEcCCCceEEE
Confidence 35678888888889999999999999743
No 227
>PF15096 G6B: G6B family
Probab=44.04 E-value=22 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=17.8
Q ss_pred CCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103 50 QTTDAGSYQCQIGTLEPKEITHTLEILG 77 (78)
Q Consensus 50 ~~~D~G~Y~C~~~~~~~~~~~~~L~V~g 77 (78)
+.-|+|++.|.... ..+.-..|+|+|
T Consensus 82 s~GDSGTFfCkGr~--e~ESRT~LhVLG 107 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQ--EEESRTVLHVLG 107 (224)
T ss_pred hcCCccceEecCcc--cccceeeeeeec
Confidence 57999999999443 334445566665
No 228
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=42.85 E-value=50 Score=19.04 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.5
Q ss_pred CCCCEEEEEEeecc
Q psy14103 51 TTDAGSYQCQIGTL 64 (78)
Q Consensus 51 ~~D~G~Y~C~~~~~ 64 (78)
-+--|.|+|+....
T Consensus 72 s~~~GayyCegk~r 85 (96)
T PF10430_consen 72 SEAIGAYYCEGKVR 85 (96)
T ss_dssp SS--EEEEEEEEET
T ss_pred ccccceEEEEEEec
Confidence 45669999999843
No 229
>PHA03270 envelope glycoprotein C; Provisional
Probab=42.52 E-value=53 Score=24.19 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.8
Q ss_pred cCCCCcEEEEEeCCEEEE
Q psy14103 7 LPDKNYVLAWKRGIAILT 24 (78)
Q Consensus 7 ~~~~~~~v~W~k~~~~l~ 24 (78)
||.+...+.|++|+..+.
T Consensus 247 YPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 247 YPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred cCCCceEEEEEeCCcccc
Confidence 678889999999887663
No 230
>PHA03291 envelope glycoprotein I; Provisional
Probab=41.42 E-value=80 Score=22.72 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=21.9
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~ 64 (78)
..--|+|++.+.+|+|.|.-.+.-.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vd 151 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVE 151 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeC
Confidence 5567999999999999999998854
No 231
>PHA03269 envelope glycoprotein C; Provisional
Probab=41.28 E-value=99 Score=23.31 Aligned_cols=18 Identities=11% Similarity=0.495 Sum_probs=14.6
Q ss_pred cCCCCcEEEEEeCCEEEE
Q psy14103 7 LPDKNYVLAWKRGIAILT 24 (78)
Q Consensus 7 ~~~~~~~v~W~k~~~~l~ 24 (78)
||.+...+.|++|+..+.
T Consensus 355 YPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 355 YPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred cCCCceEEEEEeCCcccC
Confidence 688889999999866554
No 232
>KOG0200|consensus
Probab=41.06 E-value=21 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=22.3
Q ss_pred cCeEEEEccCCCCCCEEEEEEeec
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
..+.+.+..+...|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 678999999999999999999988
No 233
>PHA03281 envelope glycoprotein E; Provisional
Probab=40.78 E-value=61 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred cCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEEEe
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEILG 77 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V~g 77 (78)
..+.|+|.++..+++|.|+-..... + ......-|.|.|
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 4568999999999999999777633 3 233344456654
No 234
>PRK09919 anti-adapter protein IraM; Provisional
Probab=37.99 E-value=62 Score=19.34 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=24.5
Q ss_pred EEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC
Q psy14103 13 VLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT 51 (78)
Q Consensus 13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~ 51 (78)
.|.|++.+..|..|+--....+.+.+. ....++|-+|.+
T Consensus 29 lilWY~~d~~L~pG~~i~~~~~gvliNdk~~pItIYnvtp 68 (114)
T PRK09919 29 LILWYQADIFLPPGSIITPVKSGVLLNDKPYPITIYNITP 68 (114)
T ss_pred EEEEEeeeEEeCCCCEEEEcCCeEEECCcEeEEEEEEecc
Confidence 578999888887765433344555444 335677777754
No 235
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=36.40 E-value=17 Score=17.02 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=7.9
Q ss_pred CCCCEEEEEE
Q psy14103 51 TTDAGSYQCQ 60 (78)
Q Consensus 51 ~~D~G~Y~C~ 60 (78)
..|.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 5788999993
No 236
>PHA03269 envelope glycoprotein C; Provisional
Probab=35.95 E-value=1e+02 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=19.5
Q ss_pred cCeEEEEccCCCCCCEEEEEEee
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIG 62 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~ 62 (78)
++..|.|+++...|+|.|+=.+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~ 309 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVI 309 (566)
T ss_pred CccceEEeecccccCceEEEEEe
Confidence 45789999999999999985554
No 237
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=35.00 E-value=88 Score=19.79 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=13.2
Q ss_pred CCCCEEEEEEeeccCCce
Q psy14103 51 TTDAGSYQCQIGTLEPKE 68 (78)
Q Consensus 51 ~~D~G~Y~C~~~~~~~~~ 68 (78)
..|.+.|+|.+.-..+.+
T Consensus 69 s~d~~~~sC~I~RPqgkS 86 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQGKS 86 (158)
T ss_pred cCCCCceEEEEECCCCCc
Confidence 468999999988543444
No 238
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=34.27 E-value=1.1e+02 Score=18.70 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103 50 QTTDAGSYQCQIGTLEPKEITHTLEILG 77 (78)
Q Consensus 50 ~~~D~G~Y~C~~~~~~~~~~~~~L~V~g 77 (78)
....-|.|.|.+.-.........++|..
T Consensus 119 ~Ik~~G~y~v~i~L~~~v~a~l~v~V~~ 146 (147)
T PRK00137 119 PIKTLGEYEVPVKLHPEVTATIKVNVVA 146 (147)
T ss_pred cccccEEEEEEEEECCCcEEEEEEEEEE
Confidence 3678899999999888888888888764
No 239
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=34.07 E-value=88 Score=17.37 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103 51 TTDAGSYQCQIGTLEPKEITHTLEILG 77 (78)
Q Consensus 51 ~~D~G~Y~C~~~~~~~~~~~~~L~V~g 77 (78)
...-|.|...+.-.+..+....+.|..
T Consensus 60 IK~~G~~~v~v~L~~~V~a~i~v~V~~ 86 (87)
T PF03948_consen 60 IKSLGEYEVKVKLHPEVSAKIKVNVVA 86 (87)
T ss_dssp BESSEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhccEEEEEEEEeCCCeEEEEEEEEEe
Confidence 557899999999888888888888864
No 240
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=32.82 E-value=1.2e+02 Score=18.65 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.2
Q ss_pred EEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103 44 LQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG 77 (78)
Q Consensus 44 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g 77 (78)
+.+.+-....-|.|.|.+.-.+..+...++.|..
T Consensus 114 I~l~~~~Ik~~G~y~v~i~L~~~V~a~i~v~V~~ 147 (148)
T TIGR00158 114 IELPDGVIRTTGEHEVTIKLHEEVFAVLKVIVVP 147 (148)
T ss_pred EECCCCceeceEEEEEEEEEcCCcEEEEEEEEEE
Confidence 3333334677899999999888888888888764
No 241
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=30.28 E-value=99 Score=16.83 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=29.9
Q ss_pred EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103 4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70 (78)
Q Consensus 4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~ 70 (78)
+.+.++...-++|+=++ +++.. ...+|.+.++ .++++|.-..+...++-
T Consensus 3 ltC~s~~sLPiswYcN~TRLlRl--------------t~~Tlt~~~l----tcNFtCV~qSGh~hSiW 52 (71)
T PF11049_consen 3 LTCPSNASLPISWYCNGTRLLRL--------------TQQTLTVVTL----TCNFTCVGQSGHRHSIW 52 (71)
T ss_pred eecCCCCCCcccEEECCceeeee--------------cCCeEeeeee----eEEeeecCCCCCCceEE
Confidence 56778888889999754 44421 2234555333 67888887665444443
No 242
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=29.23 E-value=1e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=17.0
Q ss_pred CeEEEEccC-CCCCCEEEEEEeeccCC
Q psy14103 41 GYNLQITDL-QTTDAGSYQCQIGTLEP 66 (78)
Q Consensus 41 ~~sL~I~~v-~~~D~G~Y~C~~~~~~~ 66 (78)
.+.|+..++ -+++.-.|.|.+...+.
T Consensus 3 ~~dl~~~~v~vP~~~t~Y~C~~~~lp~ 29 (132)
T PF01082_consen 3 TFDLLMPNVTVPSQDTTYWCFVFKLPD 29 (132)
T ss_dssp -EEEE-SSB---SSSSEEEEEEEE-S-
T ss_pred eEEEEcCCcCcCCCCCeEEEEEEECCc
Confidence 467888888 56788999999886543
No 243
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=29.08 E-value=1.1e+02 Score=17.05 Aligned_cols=45 Identities=16% Similarity=0.418 Sum_probs=29.8
Q ss_pred CcEEEEEeCCEEEEecccccCCCCCEEEEcC--eEEEEccCCCCCCEEEEEEeec
Q psy14103 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDG--YNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~--~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
...|.|+-+...+ +..+|...++ .++++.+.....+-.|.|...-
T Consensus 37 a~~I~Wkln~~~i--------P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 37 ASQIVWKLNGEKI--------PGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp TTCEEEECSSCES--------TCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred cceEEEEECCEEC--------ChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 3467888766555 4578887744 4677778777777888888543
No 244
>KOG4637|consensus
Probab=28.08 E-value=71 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE 65 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~ 65 (78)
.++++.|+. .+|.|.|-|.+..++
T Consensus 352 ~dGtFLIR~--ss~~g~yalSV~~~~ 375 (464)
T KOG4637|consen 352 PDGTFLIRE--SSKGGCYALSVVHDG 375 (464)
T ss_pred CCCeEEEee--ccCCCceEEEEEECC
Confidence 678999998 789999999988643
No 245
>PHA03270 envelope glycoprotein C; Provisional
Probab=27.85 E-value=1.7e+02 Score=21.68 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=23.9
Q ss_pred CEEEEcCeE---EEEccCCCCCCEEEEEEeecc
Q psy14103 35 RIQLVDGYN---LQITDLQTTDAGSYQCQIGTL 64 (78)
Q Consensus 35 R~~~~~~~s---L~I~~v~~~D~G~Y~C~~~~~ 64 (78)
.|++.+++- |.|+.+....+|.|+=...+.
T Consensus 172 ~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~ 204 (466)
T PHA03270 172 LYSVEGTFPTQRLVIQELTLATQGMYYWARGPA 204 (466)
T ss_pred cccccCCCCcceEEEEEcccccceEEEEEEecC
Confidence 556654444 999999999999999997754
No 246
>TIGR03355 VI_chp_2 type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=26.88 E-value=1.6e+02 Score=21.91 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=26.3
Q ss_pred cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103 40 DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG 77 (78)
Q Consensus 40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g 77 (78)
.+....+..+ +.+.|.|.|.+.-.| -....++|.+.+
T Consensus 431 r~A~V~V~e~-~g~pG~y~~~~~lrPhfQ~~~~~~sl~Lv~ 470 (473)
T TIGR03355 431 RAARVEVSEV-PGNPGYYRAVLFLRPHFQLEGLTVSLRLVA 470 (473)
T ss_pred ccCeEEEEEC-CCCCceEEEEEEeccceeccCceEEEEEEe
Confidence 4556666666 789999999999654 345666666654
No 247
>PHA02935 Hypothetical protein; Provisional
Probab=26.87 E-value=1.5e+02 Score=19.87 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=15.1
Q ss_pred eEEEEccCCCCCCEEEEEEe
Q psy14103 42 YNLQITDLQTTDAGSYQCQI 61 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~ 61 (78)
.-|.|..+..+|+|.|.-..
T Consensus 102 tclnisslryedsgsykgvs 121 (349)
T PHA02935 102 TCLNISSLRYEDSGSYKGVS 121 (349)
T ss_pred EEeeccceeeccCCcccCch
Confidence 35677888899999996543
No 248
>KOG1671|consensus
Probab=24.70 E-value=1.6e+02 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=15.1
Q ss_pred EeccCCC-CcEEEEEeCCEEEE
Q psy14103 4 LSGLPDK-NYVLAWKRGIAILT 24 (78)
Q Consensus 4 ~~~~~~~-~~~v~W~k~~~~l~ 24 (78)
++.+|.+ +..+.|..+...+.
T Consensus 92 l~~IPeGk~~~~kwrGkpvfir 113 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIR 113 (210)
T ss_pred eecCCCCCCcceeccCCceEEe
Confidence 5677876 57899987666653
No 249
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=24.17 E-value=33 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.5
Q ss_pred eEEEEccCCCCCCEEE
Q psy14103 42 YNLQITDLQTTDAGSY 57 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y 57 (78)
..-+|.||+.+|+|.|
T Consensus 22 HIstIKnvs~~~eg~~ 37 (152)
T PF08644_consen 22 HISTIKNVSKSDEGDY 37 (152)
T ss_pred EeeeEEcceeccCCCe
Confidence 3568999999999987
No 250
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=22.94 E-value=2e+02 Score=17.86 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103 51 TTDAGSYQCQIGTLEPKEITHTLEILG 77 (78)
Q Consensus 51 ~~D~G~Y~C~~~~~~~~~~~~~L~V~g 77 (78)
...-|.|.+.+.-.+..+....+.|..
T Consensus 126 Ik~~G~~~v~v~L~~~V~a~i~v~V~~ 152 (153)
T CHL00160 126 IKTIGIYNIEIKLTSDVKANINLQILP 152 (153)
T ss_pred ccccEeEEEEEEecCCcEEEEEEEEEE
Confidence 667899999999878888888888764
No 251
>PHA03273 envelope glycoprotein C; Provisional
Probab=22.86 E-value=2.3e+02 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=18.4
Q ss_pred eEEEEccCCCCCCEEEEEEeec
Q psy14103 42 YNLQITDLQTTDAGSYQCQIGT 63 (78)
Q Consensus 42 ~sL~I~~v~~~D~G~Y~C~~~~ 63 (78)
..|.|..+...++|.|+=.+.+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~ 219 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYA 219 (486)
T ss_pred cceEEEecchhhceEEEEEEec
Confidence 4599999999999999855544
No 252
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=22.67 E-value=74 Score=17.29 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=16.2
Q ss_pred CCCCCCEEEEEEeeccCCceEEEEEE
Q psy14103 49 LQTTDAGSYQCQIGTLEPKEITHTLE 74 (78)
Q Consensus 49 v~~~D~G~Y~C~~~~~~~~~~~~~L~ 74 (78)
+...+.|.|.|...........+.+.
T Consensus 64 v~~~~~G~y~v~y~p~~~G~y~i~V~ 89 (101)
T PF00630_consen 64 VIDNGDGTYTVSYTPTEPGKYKISVK 89 (101)
T ss_dssp EEEESSSEEEEEEEESSSEEEEEEEE
T ss_pred EEECCCCEEEEEEEeCccEeEEEEEE
Confidence 45567788888877654444444443
No 253
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=22.14 E-value=42 Score=21.21 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.6
Q ss_pred CCCCEEEEEEee
Q psy14103 51 TTDAGSYQCQIG 62 (78)
Q Consensus 51 ~~D~G~Y~C~~~ 62 (78)
..|+|.|-|-..
T Consensus 134 S~dAG~YlCn~~ 145 (194)
T cd00501 134 SNDAGTYLCNHV 145 (194)
T ss_pred cCCCCceeeHHH
Confidence 489999999543
No 254
>KOG3644|consensus
Probab=20.33 E-value=1.4e+02 Score=21.93 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=25.3
Q ss_pred cCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEee
Q psy14103 7 LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIG 62 (78)
Q Consensus 7 ~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 62 (78)
|+.++..+.|.... ++..... ..-+-|.+.+-..-.... ... +|.|.|.-.
T Consensus 193 Yn~~~v~~~W~~~~-pv~~~~~--i~LPdf~l~~~~~~~~~~-~y~-~G~~scL~v 243 (457)
T KOG3644|consen 193 YNTDDVRLEWKEWN-PVQVKKD--IKLPDFSLPSFSTEKCTG-SYT-TGVYSCLRV 243 (457)
T ss_pred cccceEEEEecCCC-CcccccC--ccCCceeccceeeccccc-ccc-CcceEEEEE
Confidence 77888899998754 3322111 112334443211111111 223 899999844
Done!