RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14103
(78 letters)
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 68.4 bits (167), Expect = 4e-17
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 9 DKNYVLAW-KRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
+ N L W L K D RI+LV ++ ++D+ +D G Y C + T
Sbjct: 33 NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT 92
Query: 64 LEPKEITHTLEILG 77
+ K L +LG
Sbjct: 93 MPVKTSKAYLTVLG 106
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 68.3 bits (166), Expect = 1e-16
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 9 DKNYVLAW-KRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
++ L W L G + D RIQLV ++ I+++ D G Y C I T
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
Query: 64 LEPKEITHTLEIL 76
+ + + +L
Sbjct: 125 MPVRTAKSLVTVL 137
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 57.3 bits (138), Expect = 1e-12
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 9 DKNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
KN L W + V + + QL+ + ++ + ++ D G Y+C +
Sbjct: 28 RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS 87
Query: 64 LEPKEITHTLEILG 77
+ +L
Sbjct: 88 DSVSTKEVKVIVLA 101
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 46.0 bits (109), Expect = 9e-08
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W + G+ + + R+++VDG NL I++++ D G+Y+C
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Score = 31.8 bits (72), Expect = 0.011
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQC 59
W + G + ST R+Q DG + + + D G Y C
Sbjct: 43 WFKDGEPV----STNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 44.7 bits (106), Expect = 2e-07
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKEITH 71
W +G + + + RI +++ +L+I ++Q DAG Y+C +GT K +
Sbjct: 134 WIKG-------DSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKL 186
Query: 72 TLEIL 76
+E+
Sbjct: 187 EVEVF 191
Score = 37.4 bits (87), Expect = 9e-05
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 31 TPDKRIQ-LVDGYNLQITDLQTTDAGSYQC 59
D R +G L I ++ +D G Y C
Sbjct: 50 LFDTRYSIRENGQLLTILSVEDSDDGIYCC 79
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 43.7 bits (103), Expect = 8e-07
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
V P Q+V G NL+I + +D G YQC
Sbjct: 353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383
Score = 38.7 bits (90), Expect = 5e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 28 TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ D R+ ++ LQI+ LQ D+G Y+C
Sbjct: 163 NPIPGDSRVVVLPSGALQISRLQPGDSGVYRC 194
Score = 38.3 bits (89), Expect = 5e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W RG K+ L+ G NL I+++ D+G+Y C
Sbjct: 255 WLRG------EEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
Score = 31.7 bits (72), Expect = 0.010
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDL-----QTTDAGSYQCQ 60
WK+ G+ + + D R Q + +L I ++ D G YQC+
Sbjct: 56 WKKDGLIL------ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCE 100
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 42.9 bits (100), Expect = 1e-06
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 5 SGLPDKNYVLAWKRGIAILTAG-------------STKVTPDKRIQLVDGYNLQITDLQT 51
S + WK I G + + + + + L I +L+
Sbjct: 19 SQKK--SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 76
Query: 52 TDAGSYQCQIGTLEPKEITHTLEI 75
D+ +Y C++ + + +
Sbjct: 77 EDSDTYICEVEDQKEEVQLLVFGL 100
Score = 30.5 bits (68), Expect = 0.033
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 37 QLVDGYNLQITDLQTTDAGSYQCQ 60
+ G L ++ L+ D+G++ C
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCT 160
Score = 29.0 bits (64), Expect = 0.13
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 15/73 (20%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
+ G +L+ K + + +AG +QC +
Sbjct: 305 VWGPTSPKLMLSLKLENKEAKVSKR---------------EKAVWVLNPEAGMWQCLLSD 349
Query: 64 LEPKEITHTLEIL 76
+ +++L
Sbjct: 350 SGQVLLESNIKVL 362
Score = 28.6 bits (63), Expect = 0.16
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 28 TKVTPDKRIQLVDGYNLQIT----DLQTTDAGSYQCQ 60
+VT D ++Q+ L +T Q +G+
Sbjct: 239 KRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA 275
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 42.3 bits (99), Expect = 1e-06
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 5 SGLPDKNYVLAWKRG--IAILTAGSTKVTP---------DKRIQLVD--GYNLQITDLQT 51
S + WK I IL + +T D R L D + L I +L+
Sbjct: 20 SQKK--SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 77
Query: 52 TDAGSYQCQIGT 63
D+ +Y C++
Sbjct: 78 EDSDTYICEVED 89
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK-EITHTLEILGF 78
+ + G L ++ L+ D+G++ C + + K E + +L F
Sbjct: 134 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 180
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 41.0 bits (96), Expect = 2e-06
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 7 LPDKNYVLAWKRG----IAILTAGSTKVTPDK----RIQLVDG-YNLQITDLQTTDAGSY 57
+ W I STK + R+ L + L I++++ D G+Y
Sbjct: 29 PLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTY 88
Query: 58 QCQIGTLEPKEITHTLE 74
++ E+ TLE
Sbjct: 89 YMRVLRETENELKITLE 105
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 41.9 bits (98), Expect = 2e-06
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 16 WKRG---IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W+RG +A +++ +L+I +L D+G+Y +
Sbjct: 32 WERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 80
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 42.4 bits (99), Expect = 2e-06
Identities = 10/70 (14%), Positives = 24/70 (34%)
Query: 6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65
G V +G + + + + + +L++ L+ D G+Y C T
Sbjct: 43 GESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFP 102
Query: 66 PKEITHTLEI 75
+ + +
Sbjct: 103 QGSRSVDIWL 112
Score = 29.7 bits (66), Expect = 0.055
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 35 RIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ G L I + + C
Sbjct: 261 PFAVAQGAQLLIRPVDKPINTTLICN 286
Score = 28.9 bits (64), Expect = 0.12
Identities = 5/64 (7%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI---GTLEPKEITHT 72
+ + + + D + C++ +P+ +T
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTS--LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 73 LEIL 76
L +
Sbjct: 211 LTVY 214
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 41.7 bits (98), Expect = 2e-06
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
D R ++ NLQI ++ +D G Y+C+
Sbjct: 46 ISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Score = 36.7 bits (85), Expect = 2e-04
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQ 60
W R + +++ L L + ++ +D G Y C+
Sbjct: 132 WFRN-------GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 42.1 bits (99), Expect = 2e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
D R ++ NLQI ++ +D G Y+C
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRC 170
Score = 37.1 bits (86), Expect = 1e-04
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQ 60
W R + +++ L L + ++ +D G Y C+
Sbjct: 228 WFRN-------GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 266
Score = 32.5 bits (74), Expect = 0.005
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
K+ +R+ + L I + DAG Y+CQ
Sbjct: 44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 41.4 bits (97), Expect = 3e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 16 WKRG-----IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W++ IA +L L+I L+T D Y+ I
Sbjct: 35 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85
Score = 23.3 bits (50), Expect = 10.0
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 38 LVDGYNLQITDLQTTDAGSYQCQI 61
L + T+ + ++C
Sbjct: 141 LKLSQRVITHKWTTSLSAKFKCTA 164
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 41.7 bits (98), Expect = 3e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W +T D R ++ NLQI ++ +D G Y+C
Sbjct: 130 WLYHNEEVT-----TISDNRFAMLANNNLQILNINKSDEGIYRC 168
Score = 36.3 bits (84), Expect = 2e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
K+ +R+ + L I + DAG Y+CQ
Sbjct: 42 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 41.3 bits (97), Expect = 4e-06
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + TKV + LQI + + D G Y+C
Sbjct: 144 WIKN-------QTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Score = 27.1 bits (60), Expect = 0.44
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 31 TPDKRIQLVDGYNLQITDLQTT----DAGSYQC 59
T + L + I ++ D Y+C
Sbjct: 50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC 82
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 41.3 bits (97), Expect = 4e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ D R ++ LQI ++ TD G+Y+C+
Sbjct: 143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Score = 34.8 bits (80), Expect = 9e-04
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQ 60
+G K+ ++W G +RI +V D L I + DAG Y+C
Sbjct: 27 AGDA-KDKDISWFSP-----NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 41.3 bits (97), Expect = 4e-06
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
SG PD W + + + + S + RI+ + LQI + TD G Y+C
Sbjct: 133 SGNPDPEI--TWFKDFLPVDPSAS-----NGRIKQLRSGALQIESSEETDQGKYEC 181
Score = 30.6 bits (69), Expect = 0.028
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W +G + +TP+ + + + D+ +Y C
Sbjct: 239 WMQG-------AEDLTPEDDMPV---GRNVLELTDVKDSANYTCV 273
Score = 27.9 bits (62), Expect = 0.24
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYN--LQITDLQTT-DAGSYQC 59
W + + + + I+ + L+I L+T D Y+C
Sbjct: 40 WNKKGKKVNS-----QRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 41.4 bits (97), Expect = 5e-06
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE 65
K+ ++W G +RI +V D L I + DAG Y+C + +
Sbjct: 31 KDKDISWFS-----PNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 66 PKEITHTLEI 75
+ T+ +
Sbjct: 86 GTQSEATVNV 95
Score = 39.5 bits (92), Expect = 2e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
WK G ++ D R ++ LQI ++ TD G+Y+C
Sbjct: 134 WKHKGRDVILK------KDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Score = 37.2 bits (86), Expect = 1e-04
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + + +K I D L I ++ D Y C
Sbjct: 230 WTKDGEPIENEEED--DEKHIFSDDSSELTIRNVDKNDEAEYVCI 272
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 40.6 bits (95), Expect = 8e-06
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ RIQ+ G L IT + +DAG YQC
Sbjct: 336 LLTRDRIQIEQG-TLNITIVNLSDAGMYQC 364
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ AW ++R + NL I ++ +D G+Y C
Sbjct: 128 PHSGE--LSYAWIFN------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175
Score = 34.0 bits (78), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
K + L+I + Q DAGSY+C
Sbjct: 248 ARKARRHKSNGILEIPNFQQEDAGSYECV 276
Score = 32.5 bits (74), Expect = 0.006
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDL-QTTDAGSYQC 59
WK G + + D R +VDG +L I + +T DAG+YQC
Sbjct: 42 WKLNGTDV------DIGMDFRYSVVDG-SLLINNPNKTQDAGTYQC 80
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 40.4 bits (94), Expect = 8e-06
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 7 LPDKNYVLAWKRG---IAILTAGSTKVTP--------DKRIQLVDGYNLQITDLQTTDAG 55
+K + W +A + TK KR+ Y+LQ+++L+ D G
Sbjct: 24 AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83
Query: 56 SYQCQIGTLEPKEITHT 72
SY+ QI T +++
Sbjct: 84 SYRAQISTKTSAKLSSY 100
Score = 25.3 bits (55), Expect = 2.3
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 37 QLVDGYNLQIT-DLQTTDAGSYQCQI 61
L NL ++ D + + Y C
Sbjct: 150 TLSSQPNLTVSWDPRISSEQDYTCIA 175
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 40.6 bits (95), Expect = 8e-06
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
WK+ + + + G L IT + +DAG Y C
Sbjct: 146 WKKD-------GSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
Score = 28.2 bits (63), Expect = 0.17
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDL-----QTTDAGSYQ 58
G P W + G + + K P L+ +L + D G Y
Sbjct: 34 EGRPTPTI--EWYKGGERV---ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 59 C 59
C
Sbjct: 89 C 89
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 40.1 bits (93), Expect = 1e-05
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIG 62
G V +G + + + + + +L++ L+ D GSY C
Sbjct: 39 ARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFV 98
Query: 63 TLE--PKEITHTLEILG 77
T + + L +L
Sbjct: 99 TFPQGSRSVDIWLRVLA 115
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 38.7 bits (90), Expect = 1e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 35 RIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74
R D + L++ +LQ D G YQC I +P + +
Sbjct: 61 RTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ 101
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 39.8 bits (93), Expect = 2e-05
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ RI++ G L+ + L D+G YQC
Sbjct: 335 LASQNRIEVSGG-ELRFSKLVLEDSGMYQC 363
Score = 34.4 bits (79), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
WK G + K+ PD R +LV G + ++ DAGSYQC
Sbjct: 41 WKMNGTEL------KMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Score = 34.4 bits (79), Expect = 0.001
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+R NL I + +D G+Y C
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCF 176
Score = 31.0 bits (70), Expect = 0.023
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
L L I ++ D G+Y+C+
Sbjct: 247 SQTSKWLSSEPLLHIQNVDFEDEGTYECE 275
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 39.5 bits (92), Expect = 2e-05
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 7 LPDKNYVLAWKRG----IAILTAGSTKVTPDK----RIQLVDG-YNLQITDLQTTDAGSY 57
L W I K + R+ L L+I ++ D G Y
Sbjct: 25 PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDY 84
Query: 58 QCQIGTLEPKEITHTLEIL 76
++ + T+E+
Sbjct: 85 YMRMLHETEDQWKITMEVY 103
Score = 23.3 bits (50), Expect = 9.9
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 38 LVDGYNLQITDLQTTDAGSYQCQI 61
L ++ T ++C+
Sbjct: 141 LRSLRQKTMSYQWTNLRAPFKCKA 164
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 39.8 bits (93), Expect = 2e-05
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ----IGTLE 65
WKR + T + D RI++ +L I D++ +D+G Y C+ IG +
Sbjct: 34 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 90
Score = 30.2 bits (68), Expect = 0.047
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYN-LQITDLQTTDAGSYQCQI 61
W+R +L A +T + + L+I D G Y C
Sbjct: 134 WRRDKLVLPAKNT---TNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 39.7 bits (92), Expect = 2e-05
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P ++ L +GY++ G Y
Sbjct: 368 PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Score = 31.6 bits (71), Expect = 0.012
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
S P +Q ++ I + T AG Y
Sbjct: 87 SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLF 121
Score = 30.0 bits (67), Expect = 0.054
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 16 WKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W+ L G+ T ++ ++ + D G Y C
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 37.8 bits (88), Expect = 3e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
G T D R + + LQI +L+ +D G+Y C
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTC 79
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 37.5 bits (87), Expect = 3e-05
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 7 LPDKNYVLAWKRGIA-----ILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGS 56
L D W R + ++++ + P R + +++ LQ DAG
Sbjct: 23 LQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGE 82
Query: 57 YQCQIGTLEPKEITHTLEI 75
Y C + +I H + +
Sbjct: 83 YGCMVDGARGPQILHRVSL 101
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 37.3 bits (87), Expect = 4e-05
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 28 TKVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
+ ++ + L +G + L + ++ D GSY G+
Sbjct: 46 SDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS 84
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 38.0 bits (88), Expect = 4e-05
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 7 LPDKNYVLAWKRG----IAILTAGSTKVTPDK---RIQLVD-GYNLQITDLQTTDAGSYQ 58
LP+ L W I + +K K R++L L I+ +Q D +Y
Sbjct: 30 LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89
Query: 59 CQIGTLEPKEITHT 72
++ E
Sbjct: 90 MRVLKKTGNEQEWK 103
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.4 bits (87), Expect = 5e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W++ G+ + T S RI+ ++ LQI + D G Y C
Sbjct: 42 WRKDGVLVSTQDS-------RIKQLENGVLQIRYAKLGDTGRYTC 79
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 38.0 bits (88), Expect = 5e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 16 WKR-GIAILTAGSTKVT----PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W R G + A ST+ D++ + L+IT LQ +D G YQC
Sbjct: 37 WLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCL 86
Score = 25.6 bits (56), Expect = 1.5
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
G P + L W + + + +L + L S+ C+
Sbjct: 131 QGPP-EPVDLLWLQD-------AVPLATAPGHG--PQRSLHVPGLN--KTSSFSCE 174
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 37.0 bits (86), Expect = 6e-05
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
++ P + G L I + Q TD Y G
Sbjct: 47 EIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD 84
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 37.0 bits (86), Expect = 6e-05
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
+V + L + L + +Q D+G Y C+I
Sbjct: 52 EVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 38.4 bits (89), Expect = 6e-05
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
WK+ + + I++ +G L + ++Q T+ G Y C+
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEG-TLHVDNIQKTNEGYYLCEAIN 794
Score = 36.8 bits (85), Expect = 2e-04
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W+ G I +V + L IT + D G Y+C
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Score = 34.1 bits (78), Expect = 0.002
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + I T V D+ Q L I D D+G Y C
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQ--VSGTLIIKDAVVEDSGKYLCV 324
Score = 32.6 bits (74), Expect = 0.006
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLEPKEITHTLE 74
W+R + + +++ ++ L I +++ +D +Y C E +LE
Sbjct: 560 WERD-------NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLE 612
Query: 75 I 75
+
Sbjct: 613 V 613
Score = 31.8 bits (72), Expect = 0.011
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
K I + L+I ++ D G YQC
Sbjct: 381 GKAIGHSESV-LRIESVKKEDKGMYQCF 407
Score = 31.8 bits (72), Expect = 0.012
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDA-GSYQCQ 60
V++W + D + ++ L I ++ D SYQC+
Sbjct: 172 VVSWHTDEEENYFPGAE--YDGKYLVLPSGELHIREVGPEDGYKSYQCR 218
Score = 29.5 bits (66), Expect = 0.080
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 30 VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQ 60
++ D I G L I ++ + AG++ C
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCH 695
Score = 27.6 bits (61), Expect = 0.36
Identities = 0/17 (0%), Positives = 5/17 (29%)
Query: 44 LQITDLQTTDAGSYQCQ 60
+ + + + +
Sbjct: 1 MNMPNERLKWLMLFAAV 17
Score = 27.6 bits (61), Expect = 0.41
Identities = 9/36 (25%), Positives = 9/36 (25%), Gaps = 7/36 (19%)
Query: 31 TPDKRIQLVDGYNLQITDL------QTTDAGSYQCQ 60
P R DG L Q A Y C
Sbjct: 84 VPGLRQISSDG-KLVFPPFRAEDYRQEVHAQVYACL 118
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 37.6 bits (87), Expect = 7e-05
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 16 WKRG---IAILTAGSTKVTPDK--RIQLVDG-YNLQITDLQTTDAGSYQCQIGTLEPKEI 69
WK+ +A L + R+ L +L I +L ++D Y+ + +
Sbjct: 28 WKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN-ITDTM 86
Query: 70 THTLEIL 76
L +L
Sbjct: 87 KFFLYVL 93
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 38.0 bits (88), Expect = 8e-05
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P ++ R G +V I + D+ +Y C+
Sbjct: 116 PALKDSVSLMR------EGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCK 162
Score = 34.5 bits (79), Expect = 0.001
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ + + KRG L D + L + + DAG Y C
Sbjct: 211 TNAE-VGFNVILKRGDTKLEIPLNSDFQDNYYK--KVRALSLNAVDFQDAGIYSCV 263
Score = 28.4 bits (63), Expect = 0.19
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 40 DGYNLQITDLQTTDAGSYQC 59
G L + + G+Y+C
Sbjct: 49 PGSTLTTRNATFKNTGTYRC 68
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 37.0 bits (86), Expect = 8e-05
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQ 60
LS + + W +G + R L DG LQI L DAG Y C
Sbjct: 43 LSKMAP----VEWWKG-------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91
Query: 61 IGT 63
G
Sbjct: 92 CGK 94
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 38.0 bits (88), Expect = 8e-05
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQI 61
+ R++ + LQI + D G Y ++
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Score = 34.9 bits (80), Expect = 8e-04
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 30 VTPDKRIQLVDG-YNLQITDLQTTDAGSYQC 59
++ D++ DG L IT+ DAG Y+
Sbjct: 48 ISVDEKHDFKDGICTLLITEFSKKDAGIYEV 78
Score = 32.6 bits (74), Expect = 0.007
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 30 VTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
+ D L I + T D+G Y
Sbjct: 263 LASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 36.3 bits (84), Expect = 9e-05
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ R ++ +++ D D+G Y C
Sbjct: 49 LVESNRTRITGEE-VEVRDSIPADSGLYACV 78
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 36.6 bits (85), Expect = 9e-05
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
+ R L DG LQI DL DAG Y C G
Sbjct: 46 TLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ 83
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 37.5 bits (87), Expect = 9e-05
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P + V G + D Q + YQC
Sbjct: 356 APPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Score = 32.9 bits (75), Expect = 0.004
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDA-GSYQCQ 60
GLP W +T DKR+ +L +++ D Y C
Sbjct: 142 PGLPSPVIF--WMSS------SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCN 190
Score = 31.8 bits (72), Expect = 0.013
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ DK L+IT++ D+G Y C
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCL 293
Score = 25.2 bits (55), Expect = 2.3
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 8/48 (16%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQC 59
W R A +V ++ G + + G YQC
Sbjct: 51 WTRNSRFFNIAKDPRV----SMRRRSGTLVIDFRSGGRPEEYEGEYQC 94
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 37.6 bits (86), Expect = 9e-05
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
R NL I + TDAG C+
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCE 231
Score = 33.7 bits (76), Expect = 0.002
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 35 RIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74
+ + L++T + D G Y CQ+ +
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 36.8 bits (85), Expect = 9e-05
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 3 YLSGLPDKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
Y +++ W R I + G R L + + + I L
Sbjct: 24 YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83
Query: 51 TTDAGSYQCQIGT 63
D+G Y+C +G
Sbjct: 84 QDDSGRYKCGLGI 96
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 37.4 bits (87), Expect = 9e-05
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
+ Q+ D Y+L I + D+G+Y
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Score = 33.5 bits (77), Expect = 0.002
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 32 PDKRIQLVDG-YNLQITDLQTTDAGSYQCQ 60
P +I DG L I + ++G Y +
Sbjct: 52 PGVQISFSDGRAKLTIPAVTKANSGRYSLK 81
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 36.6 bits (85), Expect = 9e-05
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ R ++ +++ D D+G Y C
Sbjct: 43 LAESNRTRITGEE-VEVQDSVPADSGLYACV 72
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 37.6 bits (87), Expect = 1e-04
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 20 IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
++++ + + I + + YQC
Sbjct: 122 VSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162
Score = 33.8 bits (77), Expect = 0.002
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
D N+ + + L + R Q V L + + AG+Y C
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKV--LTLNLDQVDFQHAGNYSCV 263
Score = 27.6 bits (61), Expect = 0.32
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L + + G+Y+C
Sbjct: 53 LSTNNATFQNTGTYRCT 69
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 37.7 bits (86), Expect = 1e-04
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 3 YLSGLPDKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
Y +++ W R I + G R L + + + I L
Sbjct: 24 YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83
Query: 51 TTDAGSYQCQIGT 63
D+G Y+C +G
Sbjct: 84 QDDSGRYKCGLGI 96
Score = 37.3 bits (85), Expect = 1e-04
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 10 KNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSY 57
N R + + T G + RI L +++ IT L+ DAG Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 58 QCQIGT 63
C +
Sbjct: 306 LCGAHS 311
Score = 37.3 bits (85), Expect = 2e-04
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQIGTLEPKEITH 71
W S P K D + L + + D G Y C + T
Sbjct: 480 WNNTG-CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETA 538
Query: 72 TLEI 75
+ +
Sbjct: 539 AVYV 542
Score = 36.1 bits (82), Expect = 3e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGT 63
+ I ++G RI+L +++ I L+ +DAG Y CQ G
Sbjct: 153 LYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD 206
Score = 35.4 bits (80), Expect = 7e-04
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
+ + + + G K + R+ L++ + + + L + DAG Y C T
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434
Query: 71 HTL 73
+
Sbjct: 435 VEI 437
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 37.6 bits (87), Expect = 1e-04
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
R + D L I ++ D G Y C+
Sbjct: 351 SGGRATVTDS-GLVIKGVKNGDKGYYGCR 378
Score = 36.0 bits (83), Expect = 4e-04
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
D +L Q +D G YQC
Sbjct: 49 NWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79
Score = 34.9 bits (80), Expect = 8e-04
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDA---GSYQCQ 60
+ P WK+ ++ + D+RI NL T + D Y C
Sbjct: 126 NAYPKPLIT--WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Score = 32.6 bits (74), Expect = 0.006
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ + G + ++T R G L D G Y C+
Sbjct: 246 YFKNGKDVNGNPEDRIT---RHNRTSGKRLLFKTTLPEDEGVYTCE 288
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 37.6 bits (87), Expect = 1e-04
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 16 WKRGIAILTAGST-------KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + + + KV I + L + ++ DAG Y C+
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Score = 36.0 bits (83), Expect = 4e-04
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 30 VTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQ 60
+ RI ++L + + +D G+Y C
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 37.3 bits (86), Expect = 1e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 VTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQI 61
++ D++ DG L IT+ DAG Y+ +
Sbjct: 263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 295
Score = 32.3 bits (73), Expect = 0.007
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIG 62
R+++ + + DL D G Y C +
Sbjct: 42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78
Score = 31.9 bits (72), Expect = 0.010
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 16 W-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ I K+ D+ + + LQ D G+Y Q
Sbjct: 142 YIFNEKEIFEGPKYKMHIDRN---TGIIEMFMEKLQDEDEGTYTFQ 184
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 36.2 bits (84), Expect = 1e-04
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
V R Q G Y L + + +DAG +
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR 85
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell
adhesion comple adhesion; HET: NAG; 2.30A {Homo
sapiens}
Length = 201
Score = 37.2 bits (86), Expect = 1e-04
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ W + +R NL I +++ +D G+Y C
Sbjct: 33 PYHFPDDLSYRWLLNEFPVFITMD-----KRRFVSQTNGNLYIANVEASDKGNYSC 83
Score = 35.2 bits (81), Expect = 7e-04
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQC 59
P G L+I ++Q D G Y+C
Sbjct: 155 PSTAEISTSGAVLKIFNIQLEDEGIYEC 182
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGTLE 65
+ P + L +G L + +L+ D+G Y C G
Sbjct: 47 VLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT 86
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 37.2 bits (85), Expect = 1e-04
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W R L P+ RI + L D G+Y C +
Sbjct: 54 WTRQDRDLEEPINFRLPENRIS-KEKDVLWFRPTLLNDTGNYTCML 98
Score = 35.2 bits (80), Expect = 8e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ + +G NL ++ G+Y C
Sbjct: 167 QNFNNVIPEGMNLSFLIALISNNGNYTCV 195
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 37.2 bits (86), Expect = 1e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W G ++ + +++ R L + ++ DA +Y C I
Sbjct: 501 WVNGQSLPVSPRLQLSNGNRT-------LTLFNVTRNDARAYVCGI 539
Score = 36.5 bits (84), Expect = 3e-04
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQI 61
W + R+QL D L + + D G Y+C I
Sbjct: 323 WVNN--------QSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGI 361
Score = 35.3 bits (81), Expect = 7e-04
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQI 61
W + R+QL L + ++ D SY+C+
Sbjct: 145 WVNN--------QSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183
Score = 35.3 bits (81), Expect = 7e-04
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 10 KNYVLAWKRGIAILTAGSTKVTP----DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65
K + R I G+ + TP R + +L I ++ D G Y + +
Sbjct: 35 KGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSD 94
Query: 66 PKEITHTLEI 75
T +
Sbjct: 95 LVNEEATGQF 104
Score = 30.7 bits (69), Expect = 0.026
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 38 LVDGYNLQITDLQTTDAGSYQCQ 60
L I+++ ++G Y CQ
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQ 444
Score = 29.5 bits (66), Expect = 0.069
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 36 IQLVDGYNLQITDLQTTDAGSYQCQI 61
I L I + + G+Y C +
Sbjct: 598 IPQQHTQVLFIAKITPNNNGTYACFV 623
Score = 28.0 bits (62), Expect = 0.23
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 38 LVDGYNLQITDLQTTDAGSYQCQ 60
L I ++ ++GSY CQ
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQ 266
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 35.8 bits (83), Expect = 1e-04
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
KV + + + DG + L + + + D+G ++C+
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 36.7 bits (85), Expect = 2e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
WKR + T + D RI++ +L I D++ +D+G Y C+
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Score = 35.2 bits (81), Expect = 6e-04
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 30 VTPDKRIQLV-DGYNLQITDLQTTDAGSYQC 59
+ +++ L L + ++ +D G Y C
Sbjct: 45 IEENEKYILKGSNTELTVRNIINSDGGPYVC 75
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 35.7 bits (83), Expect = 2e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
+ ++ +V +G L I DAG Y C++
Sbjct: 47 AIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 35.8 bits (83), Expect = 2e-04
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT 63
K++ ++++ L + +AG Y C+ G
Sbjct: 50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 36.7 bits (84), Expect = 2e-04
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 35 RIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT 72
QL L + + Q D Y C + T
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEAT 107
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 36.7 bits (85), Expect = 2e-04
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W + + + T+ + K+++ LQI + +D G Y+C
Sbjct: 142 WFKDFLPVDTSNNNGRI--KQLRSESIGALQIEQSEESDQGKYEC 184
Score = 26.3 bits (58), Expect = 0.80
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 29 KVTPDKRIQLV----DGYNLQITDLQT-TDAGSYQCQ 60
KV+ + + G L+I L+T D Y+C
Sbjct: 46 KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 36.6 bits (84), Expect = 2e-04
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 16 W-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + + L +T L+ T+ G+Y
Sbjct: 348 WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFL 393
Score = 33.5 bits (76), Expect = 0.003
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 8 PDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ WKR L I+ + D+G + C
Sbjct: 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Score = 28.5 bits (63), Expect = 0.16
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 34 KRIQLVDGYNLQITDLQTTDAGSYQC 59
+ T+ G Y C
Sbjct: 72 DETNENKQNEWITEKAEATNTGKYTC 97
Score = 26.2 bits (57), Expect = 1.2
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 44 LQITDLQTTDAGSYQCQ 60
I G+ +C+
Sbjct: 476 SSIDSSAFKHNGTVECK 492
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 35.8 bits (83), Expect = 2e-04
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 30 VTPDKRIQLVDGY-NLQITDLQTTDAGSYQCQ 60
+ D I L DG NL I ++ D G Y CQ
Sbjct: 51 LVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 35.4 bits (82), Expect = 2e-04
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
++ R Q+ +I+ +Q +D G+Y
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 36.5 bits (84), Expect = 2e-04
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 16 WKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + ++ + + L L +D G Y C+
Sbjct: 142 WFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Score = 33.4 bits (76), Expect = 0.003
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 16 WKR----GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
WK ++ + + + + D G+Y C
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM 86
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 36.2 bits (83), Expect = 3e-04
Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W++ ++ P + + + + + + +G+Y C +
Sbjct: 156 WQKL------SDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTV 195
Score = 32.3 bits (73), Expect = 0.007
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ +T+LQ +D G+YQC++
Sbjct: 85 SINVTNLQLSDIGTYQCKV 103
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 36.3 bits (84), Expect = 3e-04
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
+ + ++ L++ +L D+G Y C+
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Score = 35.9 bits (83), Expect = 3e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
W + ++ K+ +++ ++ I ++ + D G YQC+
Sbjct: 226 WHKD-------KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Score = 34.7 bits (80), Expect = 0.001
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + I G+ K+T + + L + + DAG Y C
Sbjct: 39 WAKDNREIRPGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTCY 79
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 35.4 bits (82), Expect = 3e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQC 59
V R+++V G + L I + T D G Y
Sbjct: 45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 36.2 bits (83), Expect = 3e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK 67
P + VL + ++ + + + L +T + G+Y C++ E +
Sbjct: 33 PGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE 92
Query: 68 EITHTLEI 75
+T +
Sbjct: 93 -VTKQEHL 99
Score = 28.5 bits (63), Expect = 0.14
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQI---TDLQTTDAGSYQC 59
W + A + + + +L + L C
Sbjct: 138 WLMPEGVEPAPTA---ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 35.0 bits (81), Expect = 3e-04
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
++ + Q +G L I+ L+ D+ +Y C IG
Sbjct: 47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ 84
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 35.0 bits (81), Expect = 3e-04
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 29 KVTPDKRIQL-VDG--YNLQITDLQTTDAGSYQCQIGTLE 65
+ ++ DG + L + + Q G Q +
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 35.3 bits (81), Expect = 3e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 3 YLSGLPDKNYVLAWKR---GIAILT-AGSTKVTPD--KRIQLVDGYNLQITDLQTTDAGS 56
+LS + + W++ +AI ++P R+ G L + L D G
Sbjct: 26 HLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGE 85
Query: 57 YQCQIGT 63
Y C T
Sbjct: 86 YFCIYHT 92
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 35.1 bits (81), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
++ +R+ + L +T TDAG Y C
Sbjct: 53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVC 86
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 35.1 bits (81), Expect = 3e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
+V P KRI + G + L I D++ D G Y
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 35.0 bits (81), Expect = 4e-04
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 11 NYVLAW---KRG-----IAILTAGSTKVTPDKRIQLV-DG----YNLQITDLQTTDAGSY 57
+ +L W A + G ++ D R Q++ +++ I D + D+G Y
Sbjct: 29 DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY 88
Query: 58 QCQIGTLEPK 67
C +L PK
Sbjct: 89 LCGAISLHPK 98
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 35.9 bits (83), Expect = 4e-04
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 28 TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ + RI +++ L + + +D G Y C
Sbjct: 393 SHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 34.9 bits (80), Expect = 4e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 34 KRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
+RI + YNL I+DL+ DAG Y+ I T T
Sbjct: 63 ERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTT 100
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 34.6 bits (80), Expect = 4e-04
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 29 KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
V D +++ ++L ++ +DAG+Y C
Sbjct: 45 TVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 35.4 bits (81), Expect = 5e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 5 SGLPDKNYVLAWKRG---IAILTAGSTKVTPD--KRIQLV--DGYNLQITDLQTTDAGSY 57
S + W++ + + +G + P+ R + ++ I L+ +D G+Y
Sbjct: 21 SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTY 80
Query: 58 QCQIGTLEPKEITH 71
+C + E
Sbjct: 81 ECVVLKYEKDAFKR 94
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex,
beta trefoil, IG domain, growth factor/growth factor
receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 334
Score = 35.7 bits (82), Expect = 5e-04
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ P +R+ + LQ+ + D+G+Y C
Sbjct: 49 GLVPSERVLVGPQ-RLQVLNASHEDSGAYSC 78
Score = 33.4 bits (76), Expect = 0.003
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
T + L + ++ DAG Y C
Sbjct: 280 TAGANTTDKELEVLSLHNVTFEDAGEYTCL 309
Score = 32.7 bits (74), Expect = 0.005
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 30 VTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQ 60
+ RI ++L + + +D G+Y C
Sbjct: 164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 35.5 bits (81), Expect = 5e-04
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 35 RIQLVDG----YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75
R++ + ++++ L+ D G Y C+ T L +
Sbjct: 81 RVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Score = 28.2 bits (62), Expect = 0.19
Identities = 6/64 (9%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI-GTLEPKEITHT 72
++W+ + P+ + ++ ++ + S C + ++ + + T
Sbjct: 168 VSWETRLKGEAEYQEIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLT 225
Query: 73 LEIL 76
L +
Sbjct: 226 LNVQ 229
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 35.2 bits (81), Expect = 5e-04
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+K I + L + DAG Y C+
Sbjct: 56 NKEIPNGNTSELIFNAVHVKDAGFYVCR 83
Score = 33.7 bits (77), Expect = 0.002
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ + + + G+Y C
Sbjct: 156 ELPLTHETKKLYMVPYVDLEHQGTYWC 182
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 35.2 bits (81), Expect = 5e-04
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
L+ W + ++T ++ +I + D+G Y C
Sbjct: 27 LTSSSHTLMYSYWTKN-------GVELTATRKN--ASNMEYRINKPRAEDSGEYHCVYHF 77
Query: 64 LEPKEITHTLEILG 77
+ + T+E+
Sbjct: 78 VSAPKANATIEVKA 91
Score = 28.7 bits (64), Expect = 0.12
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 31 TPDKRIQLVDGYN---LQITDLQTT-DAGSYQCQ 60
R +++ N L I +LQ T D G Y+C
Sbjct: 139 NSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 35.3 bits (81), Expect = 5e-04
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 16 WKRG----IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
WK A++ S P + + + D G Y C
Sbjct: 35 WKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM 83
Score = 33.8 bits (77), Expect = 0.002
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 16 WKR-GIAILTAGSTKVTPDK----RIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + GI++LTA + K I G +L + D+G Y CQ
Sbjct: 139 WFKDGISMLTADAKKTRAFMNSSFTIDPKSG-DLIFDPVTAFDSGEYYCQ 187
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 34.7 bits (80), Expect = 6e-04
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 28 TKVTPDKRIQLV--DG--YNLQITDLQTTDAGSYQCQIGTLE 65
T + ++ ++ G + L + L D+G+ + G
Sbjct: 52 TPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQR 93
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.9 bits (80), Expect = 6e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 10 KNYVLAWKRGIA-------ILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSY 57
+ Y+ W RG + T+GS + R+ + D + + + DL TDA +Y
Sbjct: 31 ETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTY 90
Query: 58 QCQIGT 63
C I
Sbjct: 91 WCGIEK 96
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.5 bits (79), Expect = 6e-04
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 8 PDKNYVLAWKRG--------IAILTAGSTKVTPDK--RIQLVDGYN-----LQITDLQTT 52
W RG ++ +VT K R L + L I + +
Sbjct: 24 YRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES 83
Query: 53 DAGSYQCQI---GTLEPKEITHTLEI 75
D+G Y C++ G +++T +L++
Sbjct: 84 DSGLYCCRVEIPGWFNDQKVTFSLQV 109
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 35.4 bits (81), Expect = 6e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 44 LQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL 76
LQITD++ DAG Y+C I T+++
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVN 114
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 34.9 bits (80), Expect = 7e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 26 GSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQI 61
+++ D++ DG L IT+ DAG Y+ +
Sbjct: 154 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 190
Score = 29.5 bits (66), Expect = 0.069
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 16 W-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
+ I K+ D+ + + LQ D G+Y Q+
Sbjct: 37 YIFNEKEIFEGPKYKMHIDRN---TGIIEMFMEKLQDEDEGTYTFQL 80
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 34.2 bits (79), Expect = 7e-04
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 32 PDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
P R ++ +G + L I DA Y
Sbjct: 51 PKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 34.2 bits (78), Expect = 7e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 16 WKRGIAILTAGSTKV-----TPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W +G + + R V + L ITD Q GSY+C++
Sbjct: 41 WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEV 91
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 35.1 bits (80), Expect = 8e-04
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P ++ L +GY++ G Y
Sbjct: 368 PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Score = 30.8 bits (69), Expect = 0.026
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 16 WKRGIAILTAGSTKV--TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W+ L G+ T ++ ++ + D G Y C
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
Score = 30.1 bits (67), Expect = 0.050
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQC 59
P +Q ++ I + T AG Y
Sbjct: 93 PHFDLQNRGVVSMVILKMTETQAGEYLL 120
Score = 26.6 bits (58), Expect = 0.79
Identities = 3/38 (7%), Positives = 12/38 (31%)
Query: 23 LTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+T G ++++ + + + +C
Sbjct: 455 ITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCC 492
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 34.9 bits (80), Expect = 0.001
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 5 SGLPDKNYVLAW-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+G P + +W K G ++L + + +D G+Y C
Sbjct: 40 AGNPTPSI--SWLKNGREFRGEHRIG----GIKLRHQQWSLVMESVVPSDRGNYTC 89
Score = 31.8 bits (72), Expect = 0.010
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 16 WKR-----GIAILTAGSTKVTPDK---RIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + G + G+ VT K + L++ ++ D G Y C+
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCR 200
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 34.6 bits (79), Expect = 0.001
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 12/84 (14%)
Query: 5 SGLPDKNYVLAWKRG--------IAILTAGSTKVTPDK----RIQLVDGYNLQITDLQTT 52
LP AW +G IA S + R + +L +
Sbjct: 22 HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK 81
Query: 53 DAGSYQCQIGTLEPKEITHTLEIL 76
D G Y + + T+
Sbjct: 82 DMGVYTLDMTDENYRRTQATVRFH 105
Score = 34.3 bits (78), Expect = 0.001
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 30 VTPDKRIQL-VDGYNLQITDLQTTDAGSYQCQI 61
+ +R+ L + L+I ++ DAG YQC+I
Sbjct: 150 LQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 182
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 34.5 bits (79), Expect = 0.001
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + I T V + R++ V G L I D D+G Y C
Sbjct: 246 WYKFIEGTTRKQA-VVLNDRVKQVSG-TLIIKDAVVEDSGKYLCV 288
Score = 31.8 bits (72), Expect = 0.010
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDA-GSYQC 59
S + D V++W D + ++ L I ++ D SYQC
Sbjct: 129 SFVADFVEVVSWHTDEEENYFPGA--EYDGKYLVLPSGELHIREVGPEDGYKSYQC 182
Score = 31.4 bits (71), Expect = 0.015
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 34 KRIQLVDGYNLQITDLQTTDAGSYQCQ 60
K I + L+I ++ D G YQC
Sbjct: 346 KAIGHSES-VLRIESVKKEDKGMYQCF 371
Score = 28.4 bits (63), Expect = 0.17
Identities = 9/35 (25%), Positives = 9/35 (25%), Gaps = 7/35 (20%)
Query: 31 TPDKRIQLVDGYNLQITDL------QTTDAGSYQC 59
P R DG L Q A Y C
Sbjct: 49 VPGLRQISSDG-KLVFPPFRAEDYRQEVHAQVYAC 82
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 34.7 bits (80), Expect = 0.001
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
++ ++ ++ + L + + D G Y C
Sbjct: 47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Score = 32.0 bits (73), Expect = 0.009
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQT-TDAGSYQCQ 60
W G + + I + +L + ++Q T AG Y+ Q
Sbjct: 137 WFHG-------QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 33.4 bits (77), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
+T + +L G+ L+I T+D+G Y C
Sbjct: 46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTC 79
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 34.7 bits (79), Expect = 0.001
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+K + + +L + D+ DAG Y+C
Sbjct: 169 DNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Score = 31.2 bits (70), Expect = 0.017
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
+ R+ DG L + D+G+Y C
Sbjct: 72 EETRMWAQDG-ALWLLPALQEDSGTYVCTT 100
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 34.3 bits (78), Expect = 0.001
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ D L + ++ G+Y C
Sbjct: 149 PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180
Score = 32.0 bits (72), Expect = 0.008
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 4 LSGLPDKNYVLAW-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
L+ K + W K + RI L + D+G Y C +
Sbjct: 29 LNPNEHK-GTITWYKDDSKTPVSTE----QASRIHQHKE-KLWFVPAKVEDSGHYYCVV 81
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 33.8 bits (78), Expect = 0.001
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
++ + +++ +G L I + G Y
Sbjct: 47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTL 80
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
G V +G + + + + + +L++ L+ D G+Y C T
Sbjct: 43 GESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVT 100
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.8 bits (77), Expect = 0.001
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 3 YLSGLPDKNYVLAWKRGIA-------ILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
W + + + ++ + R + D + + +TDL+
Sbjct: 33 QYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLR 92
Query: 51 TTDAGSYQCQIGTLEPKEITHTLEI 75
D+G Y C+I ++ ++
Sbjct: 93 EEDSGHYWCRIYRPSDNSVSKSVRF 117
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 34.4 bits (77), Expect = 0.002
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
G K K + NL I +L D+G YQC
Sbjct: 571 GVLKAESPKYGLMGRK-NLLIFNLSEGDSGVYQCL 604
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 33.9 bits (78), Expect = 0.002
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 16 W-KRGIAILTAGSTKVTPDKRIQLVDG--YNLQITDLQTTDAGSYQC 59
W ++G I+ G RIQ G + L I + DA YQ
Sbjct: 38 WYRQGKEIIADG-----LKYRIQEFKGGYHQLIIASVTDDDATVYQV 79
Score = 32.8 bits (75), Expect = 0.005
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQ 60
W++G + + Q++ + + ++ DAG Y
Sbjct: 138 WQKG-------QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 34.3 bits (78), Expect = 0.002
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 6/53 (11%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ N L + V RI I + AG C+
Sbjct: 155 SNLNVSLCARYP------EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE 201
Score = 34.0 bits (77), Expect = 0.002
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 30 VTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQ 60
+ D I L DG NL I ++ D G Y CQ
Sbjct: 707 LVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Score = 33.6 bits (76), Expect = 0.003
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ + G+ L I ++ D G+Y
Sbjct: 372 ESNHTIKAGHVLTIMEVSERDTGNYTVI 399
Score = 29.0 bits (64), Expect = 0.12
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 26 GSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQ 60
+ + L I + D G+Y+C
Sbjct: 66 NQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCF 104
Score = 29.0 bits (64), Expect = 0.12
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 40 DGYNLQITDLQTTDAGSYQCQ 60
D +++ + D G Y C
Sbjct: 623 DILIMELKNASLQDQGDYVCL 643
Score = 28.6 bits (63), Expect = 0.15
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ W+ + T L I + +D G Y C
Sbjct: 249 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 308
Score = 26.3 bits (57), Expect = 0.97
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---LQITDLQTTDAGSYQCQ 60
+ Y R + G+ + L++G N + + Y+C+
Sbjct: 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 29 KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
V PD +++ ++L I + + DAG Y C
Sbjct: 49 PVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 33.1 bits (76), Expect = 0.002
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ + L I D D G+Y C
Sbjct: 51 PIQYARSTCEAGVAELHIQDALPEDHGTYTC 81
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 34.0 bits (78), Expect = 0.002
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 26 GSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
+ D +Q + LQI + G Y C
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCS 175
Score = 33.6 bits (77), Expect = 0.002
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 29 KVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQ 60
+ P ++Q + +L I + +D G Y C+
Sbjct: 47 RSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79
Score = 33.6 bits (77), Expect = 0.002
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLV-DGYN--LQITDLQTTDAGSYQC 59
W + ++ K+ +++ + + + I ++ + D G YQC
Sbjct: 418 WHKD-------KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Score = 32.9 bits (75), Expect = 0.005
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W + I G+ K+T + + L + + DAG Y C
Sbjct: 231 WAKDNREIRPGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTC 270
Score = 32.9 bits (75), Expect = 0.005
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
+ + ++ L++ +L D+G Y C+
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Score = 30.9 bits (70), Expect = 0.021
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
W + + S + + LQ + + +AG Y CQI
Sbjct: 511 WFKDKGEIVRESDNI---WISYSENIATLQFSRAEPANAGKYTCQIKN 555
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 29 KVTPDKRIQLVDG--YNLQITDLQTTDAGSYQCQIG 62
+++ K I G L I+ D +YQC +G
Sbjct: 57 QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG 92
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 33.0 bits (75), Expect = 0.002
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 18/91 (19%)
Query: 3 YLSGLPDKNYVLAWKRGIA--------ILTAGSTKVTPDK--RIQLVDG-----YNLQIT 47
Y + W +G +L VT K R QL +L I
Sbjct: 18 YTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIK 77
Query: 48 DLQTTDAGSYQCQI---GTLEPKEITHTLEI 75
++ D G+Y C+I G + K++ L+I
Sbjct: 78 NVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 28 TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
T RI ++ L T++ D G Y C
Sbjct: 383 THGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 33.4 bits (76), Expect = 0.002
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYN---------LQITDLQTTDAGSYQCQI 61
W +G + A K +QL + + +QI + AG+Y+C++
Sbjct: 44 WFKGKWMDLASK----AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 94
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 33.5 bits (76), Expect = 0.002
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQI 61
+ L R ++ + +R L++ I +Q D+G Y+C +
Sbjct: 28 RRECTELEGIR-ASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 33.2 bits (76), Expect = 0.002
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 9 DKNYVLAWKRGIA-------ILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGS 56
K+Y W +G+ + T S ++ R+ + D + + + DL+ +DAG
Sbjct: 29 WKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGI 88
Query: 57 YQCQIGT 63
Y C I
Sbjct: 89 YWCGITK 95
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 33.3 bits (76), Expect = 0.002
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 44 LQITDLQTTDAGSYQCQI 61
+++ +LQ D+G YQC I
Sbjct: 83 VRMVNLQVEDSGLYQCVI 100
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 32.8 bits (75), Expect = 0.002
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 30 VTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
+ RI ++L + + +D G+Y C
Sbjct: 49 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 32.8 bits (75), Expect = 0.002
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ L L + ++ D G+Y C
Sbjct: 48 GVPLPLPPSPVLILPEIGPQDQGTYSC 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 33.6 bits (76), Expect = 0.003
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 14 LAWKRGIAILTAGS---TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
L W ++L S T+ + V L++ + G+Y
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Score = 25.1 bits (54), Expect = 2.5
Identities = 2/41 (4%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 20 IAILTAGSTKVTPDKRIQLVDGYNLQITDL-QTTDAGSYQC 59
+ + + + L + ++ + + C
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTC 230
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 33.3 bits (76), Expect = 0.003
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQI 61
+ R++ + LQI + D G Y ++
Sbjct: 43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Score = 32.9 bits (75), Expect = 0.005
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 4/34 (11%)
Query: 30 VTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
+ L I + T D+G Y
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 33.3 bits (75), Expect = 0.003
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P+ N + W G L + +Q D+G+Y C
Sbjct: 33 PEDNATVHWVLR-------KPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY 78
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 32.7 bits (74), Expect = 0.004
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 28 TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+V + I L D G+Y+C
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 32.9 bits (74), Expect = 0.004
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L + D+Q D G Y C+I
Sbjct: 86 LLLQDVQKADEGIYTCEI 103
Score = 32.2 bits (72), Expect = 0.009
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 27 STKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
+V I DG ++++ ++ +D G Y C I
Sbjct: 187 RNRVDLTGDISRNDG-SIKLQTVKESDQGIYTCSIYV 222
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 32.5 bits (74), Expect = 0.004
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 44 LQITDLQTTDAGSYQCQI 61
+ +T+LQ +D G+YQC++
Sbjct: 91 INVTNLQLSDIGTYQCKV 108
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.5 bits (73), Expect = 0.004
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---------LQITDLQTTDAGSYQCQI 61
+ W +G R + +N L I + D G Y+ ++
Sbjct: 46 TIKWFKG----KWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEV 99
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 32.8 bits (75), Expect = 0.004
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDG--YNLQITDLQTTDAGSYQCQ 60
W R + A K RIQ G + L I + DA YQ +
Sbjct: 38 WYRQGKEIIADGLKY----RIQEFKGGYHQLIIASVTDDDATVYQVR 80
Score = 29.0 bits (65), Expect = 0.12
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 30 VTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQI 61
+ + Q++ + + ++ DAG Y
Sbjct: 145 IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 31.9 bits (73), Expect = 0.004
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 30 VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQ 60
V PD+R L+I + DAG Y C+
Sbjct: 46 VRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK 80
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 32.1 bits (73), Expect = 0.005
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 43 NLQITDLQTTDAGSYQCQIGT 63
+++ +LQ D+G YQC I
Sbjct: 77 RVRMVNLQVEDSGLYQCVIYQ 97
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 32.2 bits (73), Expect = 0.006
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L+I +++ +D G Y C
Sbjct: 87 LRIQNVRFSDEGGYTCFF 104
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 32.2 bits (73), Expect = 0.006
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 44 LQITDLQTTDAGSYQCQI 61
LQI LQ D Y C++
Sbjct: 80 LQINTLQMDDRNHYTCEV 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 32.5 bits (74), Expect = 0.006
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ + + +G +L +Q D G Y C
Sbjct: 291 GSNGSVSVRNG-DLFFKKVQVEDGGVYTC 318
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 32.1 bits (73), Expect = 0.007
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + G + + ++ L + ++ +DAG Y CQ
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHW---IGFLSLKSVERSDAGRYWCQ 78
Score = 28.2 bits (63), Expect = 0.19
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+I + T + + C+
Sbjct: 137 TTKIGGPAPSPSVLNVTGVTQSTMFSCE 164
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.9 bits (72), Expect = 0.008
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L + L D G+Y C+ T
Sbjct: 95 LALHGLTVEDEGNYTCEFAT 114
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 32.2 bits (73), Expect = 0.008
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 40 DGYNLQITDLQTTDAGSYQCQ----IGTLEPKEITHTLEILG 77
QI + D+G Y C+ G + + L++LG
Sbjct: 221 TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 29.9 bits (67), Expect = 0.050
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 43 NLQITDLQTTDAGSYQCQIGT 63
+ +IT D+G Y+CQ G
Sbjct: 49 SYRITSASVNDSGEYRCQRGL 69
Score = 28.3 bits (63), Expect = 0.17
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 43 NLQITDLQTTDAGSYQC 59
NL I + G+Y C
Sbjct: 132 NLTILKTNISHNGTYHC 148
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 31.1 bits (71), Expect = 0.010
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 32 PDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
R + DG + L +D+ D G YQ
Sbjct: 54 FKARYRFKKDGKRHILIFSDVVQEDRGRYQVITN 87
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 30.9 bits (70), Expect = 0.012
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 35 RIQLVDGYNLQITDLQTTDAGSYQC 59
R +G L I ++Q +DAG+Y C
Sbjct: 56 RAMDFNG-ILTIRNVQPSDAGTYVC 79
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.9 bits (71), Expect = 0.012
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ L I +L G Y C+
Sbjct: 536 KENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCE 570
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 31.1 bits (70), Expect = 0.013
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
L W G + +++ I + +L I + D G Y C +
Sbjct: 44 IRSLIWTNGYTVTHQRNSRYQLKGNISEGN-VSLTIENTVVGDGGPYCCVV 93
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 31.3 bits (71), Expect = 0.014
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 11 NYVLAW---------KRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSY 57
+ +L W ++ A S V + + +++ I D + D+G Y
Sbjct: 39 DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY 98
Query: 58 QCQIGTLEPK 67
C +L PK
Sbjct: 99 LCGAISLHPK 108
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 31.0 bits (70), Expect = 0.015
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 9 DKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGS 56
+ W R + T GS R+ + D + + + +L DAG+
Sbjct: 24 HRTLNKYWCRPPQIFLCDKIVETKGSAGKRNG-RVSIRDSPANLSFTVTLENLTEEDAGT 82
Query: 57 YQCQIGT 63
Y C + T
Sbjct: 83 YWCGVDT 89
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 31.3 bits (70), Expect = 0.015
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ W+ + T L I + +D G Y C
Sbjct: 130 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 189
Score = 29.0 bits (64), Expect = 0.11
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
+ N L + +++ D + I + AG C+
Sbjct: 36 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFT------IPSYMISYAGMVFCEA 83
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 31.4 bits (71), Expect = 0.015
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 29 KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
V + Q+ +L I+++ D Y C
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 30.8 bits (69), Expect = 0.017
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGS----TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ D AW L + + L++ +++ T G YQC
Sbjct: 35 ASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCV 94
Query: 61 I 61
I
Sbjct: 95 I 95
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.6 bits (69), Expect = 0.018
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L + DL+ D+G+Y +
Sbjct: 81 LLLKDLKPEDSGTYNFRF 98
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 31.3 bits (70), Expect = 0.019
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ D G NL I + + D+G Y C
Sbjct: 170 LIIDGTKYSQSGQNLIIHNPELEDSGRYDCY 200
>3mjg_X Beta-type platelet-derived growth factor receptor;
protein-protein complex, growth factor-receptor
complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo
sapiens}
Length = 289
Score = 30.8 bits (69), Expect = 0.024
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTL 73
+ W+R K L +T+L D G Y C E
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTF-----SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82
Query: 74 EI 75
+
Sbjct: 83 RL 84
Score = 28.9 bits (64), Expect = 0.11
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 9 DKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
++ W + L I + D+G+Y C
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN 260
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.8 bits (69), Expect = 0.025
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
L+I ++ +D+G Y C
Sbjct: 83 AALRIHNVTASDSGKYLCYF 102
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.3 bits (68), Expect = 0.027
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L I++ D+G Y C+I
Sbjct: 75 LTISNTNRGDSGVYCCRI 92
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 30.0 bits (68), Expect = 0.028
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 44 LQITDLQTTDAGSYQCQI 61
+ + G+Y C +
Sbjct: 52 YMVPYVDLEHQGTYWCHV 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 30.5 bits (69), Expect = 0.031
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
+ R+ + L++ Q D G+Y C
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 0.032
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 44 LQITDLQTTDAGSYQCQIGTLEPK 67
L I D + +DAG Y ++ K
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGNIK 113
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.2 bits (67), Expect = 0.032
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 35 RIQLVDGYN--LQITDLQTTDAGSYQCQIGT-LEPKEITHTLEILGF 78
R + + L++T + D G Y CQ+ E + +
Sbjct: 83 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 129
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 30.2 bits (67), Expect = 0.035
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 33 DKRIQLVDGYNLQITDL-QTTDAGSYQCQIGTLEPKEITHTL 73
D + D +L + + + +G Y C +P++ L
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 29.9 bits (67), Expect = 0.037
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L I D++ DA Y C++
Sbjct: 83 LHIRDVRGHDASIYVCRV 100
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 29.7 bits (66), Expect = 0.040
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 27 STKVTPDKRIQLVDGYNLQITDLQTT-DAGSYQCQIGTLEPKEITHTL 73
+ D + D +L + + +G Y C +P++ L
Sbjct: 44 NIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 91
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.0 bits (67), Expect = 0.042
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L++ +Q +AG Y+C++
Sbjct: 84 LRLPGIQLEEAGEYRCEV 101
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.6 bits (66), Expect = 0.045
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
+ I +L +D G++ C +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKN 102
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 29.2 bits (66), Expect = 0.046
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 29 KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQ 60
K+ RI + L I D+ D+ S +
Sbjct: 45 KIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 29.9 bits (67), Expect = 0.048
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 43 NLQITDLQTTDAGSYQCQIGTLEPKEITH 71
+L I + + D+G Y+CQ + E +
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVY 80
Score = 27.9 bits (62), Expect = 0.21
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 39 VDGYNLQITDLQTTDAGSYQCQ 60
+ +N+ IT+ D+G+Y C
Sbjct: 131 YENHNISITNATVEDSGTYYCT 152
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 29.2 bits (66), Expect = 0.050
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 31 TPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
R + D L I D+Q D G Y
Sbjct: 49 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 29.7 bits (66), Expect = 0.054
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 3/56 (5%)
Query: 8 PDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYN--LQITDLQTTDAGSYQCQ 60
+ W + K R L I+ + D+G + C
Sbjct: 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Score = 25.1 bits (54), Expect = 3.0
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
T + + T G+Y C
Sbjct: 46 TYFNEMVENKKNEWIQEKAEATRTGTYTCS 75
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 28.8 bits (65), Expect = 0.060
Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
+ + ++ + D+G+Y+
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 29.4 bits (66), Expect = 0.061
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L+I+DL+ D+G+Y+CQ
Sbjct: 68 LRISDLRVEDSGTYKCQ 84
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 29.4 bits (65), Expect = 0.074
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 42 YNLQITDLQTTDAGSYQCQIGT 63
+L I D + D GSY ++
Sbjct: 82 CSLSIGDARMEDTGSYFFRVER 103
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 29.2 bits (65), Expect = 0.079
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
Y L + + G Y C +
Sbjct: 90 YVLTLNKFSKENEGYYFCSV 109
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 28.8 bits (65), Expect = 0.081
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 29 KVTPDKRIQLVDGYN---LQITDLQTTDAGSYQCQ 60
++ +I + L+I D T D+G+Y+
Sbjct: 48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 29.2 bits (65), Expect = 0.081
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 11/56 (19%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
L+ + W +G +L + G + G Y C
Sbjct: 22 LNDSATEVTGHRWLKGGVVLKEDAL-----------PGQKTEFKVDSDDQWGEYSC 66
Score = 25.4 bits (55), Expect = 2.0
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDG--YNLQITDLQ-TTDAGSYQCQ 60
W + + + L I +L D G Y+C
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system;
2.21A {Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.8 bits (65), Expect = 0.083
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L+I+DL+ D+G+Y+CQ
Sbjct: 68 LRISDLRVEDSGTYKCQADY 87
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 28.8 bits (65), Expect = 0.083
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 11 NYVLAW---KRG-----IAILTAGSTKVTPDKRI---QLVDG--YNLQITDLQTTDAGSY 57
++VL W +A ++ D R QL +G +++ + + D+G+Y
Sbjct: 31 SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTY 90
Query: 58 QCQIGTLEPK 67
C +L PK
Sbjct: 91 LCGAISLAPK 100
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 28.5 bits (64), Expect = 0.089
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 43 NLQITDLQTTDAGSYQCQIGTLEPKEITH---TLEIL 76
DAG+YQC+ EP ++ +E++
Sbjct: 57 EFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELV 93
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.4 bits (64), Expect = 0.099
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I DL+ D+G+Y+C+
Sbjct: 68 LTIRDLRVEDSGTYKCK 84
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 28.5 bits (64), Expect = 0.11
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L+I DL D G+Y+C +G
Sbjct: 68 LRINDLTVEDGGTYRCGLGV 87
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 28.1 bits (63), Expect = 0.15
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 32 PDKRIQLVDG----YNLQITDLQTTDAGSYQCQ 60
RI L L I D+ DAG Y
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 28.6 bits (64), Expect = 0.15
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 39 VDGYNLQITDLQTTDAGSYQC 59
I + +G Y C
Sbjct: 131 HLDPTFSIPQANHSHSGDYHC 151
Score = 27.9 bits (62), Expect = 0.24
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 15/58 (25%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIG 62
+ P+ + + + G I T D+G Y CQ G
Sbjct: 29 ARSPESDSIQWFHNGNLIPTHTQP---------------SYRFKANNNDSGEYTCQTG 71
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.1 bits (63), Expect = 0.16
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPKEITH----TLEILGF 78
L I ++ D G Y CQ E+ L ++GF
Sbjct: 80 ATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 120
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 28.3 bits (63), Expect = 0.16
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 43 NLQITDLQTTDAGSYQCQIGT 63
+ I D+G Y+CQ
Sbjct: 55 SYFIDAATVNDSGEYRCQTNL 75
Score = 27.5 bits (61), Expect = 0.30
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
+ I D+GSY C+
Sbjct: 138 DFHIPKATLKDSGSYFCR 155
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 28.3 bits (63), Expect = 0.17
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 43 NLQITDLQTTDAGSYQCQIG 62
+ I D+G Y+CQ
Sbjct: 55 SYFIDAATVDDSGEYRCQTQ 74
Score = 27.2 bits (60), Expect = 0.46
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
+ I D+GSY C+
Sbjct: 138 DFYIPKATLKDSGSYFCR 155
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.0 bits (62), Expect = 0.18
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L + + G Y C
Sbjct: 85 YVLTLNKFSKENEGYYFCS 103
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 28.3 bits (62), Expect = 0.19
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
L + D + +AGSY+ +
Sbjct: 53 TLTVADATSENAGSYKVTV 71
Score = 27.1 bits (59), Expect = 0.53
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 5 SGLPDKNYVLAW---KRGIAILTAGSTKVT-PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
SG+P+ W + G T ++V + + +L D + C
Sbjct: 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCV 276
Score = 26.7 bits (58), Expect = 0.75
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
++ I + G Y ++
Sbjct: 146 DITIQEFTADKNGVYTVKV 164
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 27.9 bits (62), Expect = 0.20
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 7/39 (17%)
Query: 28 TKVTPDKRIQLVDGYN-------LQITDLQTTDAGSYQC 59
+ K I + L + G+Y
Sbjct: 44 QPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 28.3 bits (63), Expect = 0.20
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 29 KVTPDKRIQLVDGYN---LQITDLQTTDAGSYQCQI 61
+ I++ + + L++T D G+Y C
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 27.7 bits (62), Expect = 0.21
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L+I DL D+G+Y+C+ +
Sbjct: 68 LRINDLTVKDSGTYRCKPES 87
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 27.7 bits (62), Expect = 0.22
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 42 YNLQITDLQTTDAGSYQC-QIGTLEPKEITH----TLEILGF 78
Y L I ++Q D G Y C Q +T L +LGF
Sbjct: 77 YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGF 118
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.9 bits (62), Expect = 0.22
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L I D Q D+ +Y C
Sbjct: 72 FSLHIADSQPGDSATYFCA 90
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 28.0 bits (62), Expect = 0.27
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L IT Q D G Y C
Sbjct: 74 LHITAAQPGDTGLYLCA 90
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 27.8 bits (61), Expect = 0.27
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ W+ + T L I + +D G Y C
Sbjct: 33 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 92
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 27.3 bits (60), Expect = 0.27
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 14 LAWKRG-IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
+ W+RG + +++ +L+I +L D+G+Y +
Sbjct: 30 VRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 78
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.7 bits (62), Expect = 0.28
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQIGTLE 65
+ + W+ +T G P K Y L +T ++ C++ T
Sbjct: 144 ADVAVTWEADGTPITQGVKTTQPSKSDSK---YMATSYLTMTADAWKSRNTFICKV-THG 199
Query: 66 PKEITHTL 73
+ +L
Sbjct: 200 GNTVEKSL 207
Score = 25.8 bits (57), Expect = 1.6
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
L I+ Q D Y CQ
Sbjct: 70 ATLTISKAQAGDEADYYCQ 88
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 27.4 bits (61), Expect = 0.29
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 16 W-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W K G + T+ T D + +D+G Y+
Sbjct: 58 WTKGGAPLDTSRVHVRTSDFDTVFF------VRQAARSDSGEYELS 97
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 27.3 bits (61), Expect = 0.29
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQ 60
V W G+ L I DG L + D+ D G+Y+C+
Sbjct: 26 ENYDQSTQVT-WYFGVRQLENS-----EKYEITYEDGVAILYVKDITKLDDGTYRCK 76
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T
cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 27.6 bits (61), Expect = 0.31
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I D Q D+G+Y C
Sbjct: 73 LHIRDAQLEDSGTYFCA 89
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 27.6 bits (61), Expect = 0.32
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I Q D+ +Y C
Sbjct: 74 LYIKGSQPEDSATYLCA 90
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 27.6 bits (61), Expect = 0.34
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
L I Q D+ +Y C
Sbjct: 72 STLYIAASQPGDSATYLCA 90
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 27.2 bits (61), Expect = 0.34
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 44 LQITDLQTTDAGSYQCQIGTLEPKEIT 70
L I D Q D+ +Y C
Sbjct: 73 LHIADSQPGDSATYFCAASANSGTYQR 99
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 27.6 bits (61), Expect = 0.36
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 37 QLVDGYNLQITDLQTTDAGSYQCQ 60
+ ++ I D+ + AG Y C
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCI 78
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 27.2 bits (60), Expect = 0.38
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 16 WKRGIAILTAGS---TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W ++L S T+ + V L++ + G+Y
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 80
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 27.1 bits (60), Expect = 0.41
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 37 QLVDGYNLQITDLQTTDAGSYQCQ 60
+ ++ I D+ + AG Y C
Sbjct: 52 ERINKVKFYIPDMNSRMAGQYSCI 75
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.2 bits (61), Expect = 0.42
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPKEIT----HTLEILG 77
+ L I+DL+ DA +Y CQ P ++ + + G
Sbjct: 71 FTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKG 110
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 27.5 bits (60), Expect = 0.44
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
G P N + RG L P + + + ++ C+
Sbjct: 112 GGAPRANLTVVLLRGEKELKREPAVGEPAEVT-------TTVLVRRDHHGANFSCR 160
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.1 bits (60), Expect = 0.45
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 37 QLVDGYNLQITDLQTTDAGSYQCQ 60
+LV I + G Y+C
Sbjct: 53 ELVKKGQFPIPSITWEHTGRYRCY 76
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 27.1 bits (60), Expect = 0.46
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
I + AG YQCQ
Sbjct: 65 EFVIDHMDANKAGRYQCQ 82
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 26.8 bits (59), Expect = 0.50
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 6 GLPDKNYVLAWKRG--------IAILTAGSTKVTP----DKRIQLVDGYNLQITDLQTTD 53
LP + +W +G I G+ + TP R + +L I ++ D
Sbjct: 24 NLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQND 83
Query: 54 AGSYQCQI--GTLEPKEITHTLEI 75
AG Y + L +E T +
Sbjct: 84 AGFYTLHVIKSDLVNEEATGQFRV 107
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 26.8 bits (59), Expect = 0.57
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
N I+ + AG+Y+C
Sbjct: 64 NFSISRMTQDLAGTYRCY 81
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 26.7 bits (58), Expect = 0.67
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 7/46 (15%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W+ I G L + + + SY C
Sbjct: 35 WRTQIDSPLNGKVTNEGTTST-------LTMNPVSFGNEHSYLCTA 73
Score = 26.3 bits (57), Expect = 0.90
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
P + +G ++ + D++ + T + C+
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCR 172
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 26.7 bits (59), Expect = 0.67
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
++ + I + AG Y+C
Sbjct: 42 SPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 26.8 bits (59), Expect = 0.68
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 34 KRIQLVDGYNLQITDLQTTDAGSYQCQ 60
++ + I + AG Y+C
Sbjct: 50 NPLEPKNKARFSIPSMTEHHAGRYRCY 76
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 26.7 bits (59), Expect = 0.69
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
L I+ LQ D+ Y C +G
Sbjct: 209 VALTISALQLEDSAKYFCALG 229
Score = 25.2 bits (55), Expect = 2.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 42 YNLQITDLQTTDAGSYQCQIGT 63
+ + +L D+G Y C
Sbjct: 79 LRMILRNLIENDSGVYYCATWD 100
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 26.6 bits (58), Expect = 0.74
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 40 DGYNLQITDLQTTDAGSYQC 59
D + + D G Y
Sbjct: 101 DRSIFTVEGAEKEDEGVYTV 120
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 26.4 bits (58), Expect = 0.76
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 44 LQITDLQTTDAGSYQCQ 60
+ I+++ DAG+Y C
Sbjct: 76 ISISNITPADAGTYYCV 92
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 26.3 bits (57), Expect = 0.77
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 43 NLQITDLQTTDAGSYQCQIGTLEP 66
NL I L+ D G Y C++ + P
Sbjct: 78 NLTIQGLRAMDTGLYICKVELMYP 101
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 26.2 bits (58), Expect = 0.78
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
W G + + LQ+ + + G Y
Sbjct: 35 WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL 79
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 26.6 bits (58), Expect = 0.82
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L IT D +Y C
Sbjct: 75 LHITATLLDDTATYFCV 91
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin
fold, natural killer cell receptor, immune SY; HET:
NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Length = 316
Score = 26.4 bits (58), Expect = 0.84
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
+ ++ + T AG+Y C+
Sbjct: 75 SFNMSPVTTAHAGNYTCR 92
Score = 26.4 bits (58), Expect = 0.99
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 26 GSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQ 60
G +K Q+ DG N I + AG+Y+C
Sbjct: 155 GISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 26.3 bits (58), Expect = 0.84
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-----TDAGSYQCQ 60
W +G + + K P L+ +L + D G Y C
Sbjct: 43 WYKGGERVE--TDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCV 90
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 26.2 bits (58), Expect = 0.92
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 44 LQITDLQTTDAGSYQCQIGTLEPKEITHTL 73
L +T Q SY CQ+ T E + T+
Sbjct: 201 LSLTPEQWKSHRSYSCQV-THEGSTVEKTV 229
Score = 24.3 bits (53), Expect = 4.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+L I+ L++ D Y C
Sbjct: 91 ASLAISGLRSEDEADYYCA 109
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 26.1 bits (58), Expect = 0.93
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 43 NLQITDLQTTDAGSYQCQI 61
+Q+TDLQ TD+G Y+C I
Sbjct: 77 QVQMTDLQVTDSGLYRCVI 95
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 26.2 bits (58), Expect = 0.97
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
+ L+I+ ++ D G Y C +L P
Sbjct: 109 FTLRISRVEAEDLGVYYCFQASLVP 133
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II,
I immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 26.2 bits (57), Expect = 0.99
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 43 NLQITDLQTTDAGSYQCQIGT 63
L I D Q D+G+Y C
Sbjct: 71 TLHIKDAQLEDSGTYFCAAED 91
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 25.8 bits (57), Expect = 1.0
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 4/31 (12%)
Query: 33 DKRIQLVDGYN----LQITDLQTTDAGSYQC 59
+ + L T D G+Y
Sbjct: 53 SDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 26.1 bits (58), Expect = 1.0
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YN----LQITDLQTTDAGSYQCQIGTL 64
+ + WK A + G P K+ Y L +T Q CQ+ T
Sbjct: 143 GSATVTWKANGATINDGVKTTKPSKQ----GQNYMTSSYLSLTADQWKSHNRVSCQV-TH 197
Query: 65 EPKEITHTL 73
E + + +L
Sbjct: 198 EGETVEKSL 206
Score = 24.2 bits (53), Expect = 4.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
L I+ Q D +Y C
Sbjct: 69 ATLTISGAQPEDEAAYYCL 87
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 26.1 bits (57), Expect = 1.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
N I + AG+Y+C
Sbjct: 63 NFSIGPMMQDLAGTYRCY 80
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi}
SCOP: b.86.1.2
Length = 199
Score = 26.1 bits (56), Expect = 1.2
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTD 53
+T D + L +G +++I D+
Sbjct: 3 ITGDALVALPEGESVRIADIVPGA 26
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C*
3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 26.2 bits (57), Expect = 1.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 43 NLQITDLQTTDAGSYQCQ 60
L I D Q D+G+Y C
Sbjct: 73 TLHIRDAQLEDSGTYFCA 90
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 26.1 bits (57), Expect = 1.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L IT + D SY C T
Sbjct: 74 LLITASRAADTASYFCATDT 93
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 26.0 bits (57), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L + +LQ D+ SY C
Sbjct: 72 LLLKELQMKDSASYLCA 88
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 25.7 bits (57), Expect = 1.3
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
L IT QT D Y C
Sbjct: 73 AALTITGAQTEDEAIYFCA 91
Score = 23.8 bits (52), Expect = 6.3
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQC 59
++ + WK +TAG P K Q + Y L +T SY C
Sbjct: 139 ITDFYPGVVTVDWKVDGTPVTAGMETTQPSK--QSNNKYMASSYLTLTARAWERHSSYSC 196
Query: 60 QIGTLEPKEITHTL 73
Q+ T E TL
Sbjct: 197 QV-THEGHSSNKTL 209
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 25.7 bits (57), Expect = 1.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I+++Q D Y C
Sbjct: 77 LSISNIQPEDEAIYICG 93
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 25.8 bits (56), Expect = 1.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I D Q +D+ Y C
Sbjct: 75 LHIRDSQPSDSALYFCA 91
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 25.6 bits (57), Expect = 1.3
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+++ I+++ DAG+Y C
Sbjct: 79 FSISISNITPADAGTYYCV 97
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 25.8 bits (56), Expect = 1.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 44 LQITDLQTTDAGSYQC 59
L IT Q +D+ SY C
Sbjct: 77 LHITASQLSDSASYIC 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 1.4
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 18 RGIAILTAGSTKVTPDKRIQLVDGY 42
G+ ++ AG+ + PD G+
Sbjct: 523 TGVRVIVAGTLDINPDDDY----GF 543
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 25.9 bits (57), Expect = 1.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YN----LQITDLQTTDAGSYQ 58
L+ K+ + WK + G D+ D Y+ L +T + SY
Sbjct: 178 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQ--DSKDSTYSMSSTLTLTKDEYERHNSYT 235
Query: 59 CQI 61
C+
Sbjct: 236 CEA 238
Score = 25.5 bits (56), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
+ L+I+ ++ D G Y C G+ P
Sbjct: 113 FTLKISRVEAEDLGIYYCVQGSHFP 137
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 25.4 bits (56), Expect = 1.4
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+++ I+++ DAG+Y C
Sbjct: 74 FSISISNITPADAGTYYCV 92
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 25.9 bits (57), Expect = 1.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 40 DGYNLQITDLQTTDAGSYQCQ 60
D L I ++ + AG Y+C
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCS 70
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 25.8 bits (57), Expect = 1.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 43 NLQITDLQTTDAGSYQC 59
L IT Q D+ Y C
Sbjct: 75 GLIITATQIEDSAVYFC 91
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 25.3 bits (56), Expect = 1.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 43 NLQITDLQTTDAGSYQC 59
L IT Q D+ Y C
Sbjct: 75 GLIITATQIEDSAVYFC 91
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 25.4 bits (56), Expect = 1.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 46 ITDLQTTDAGSYQCQ 60
I + +AG Y+C
Sbjct: 69 IDSVSEGNAGPYRCI 83
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 25.2 bits (54), Expect = 1.9
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75
+ L + D GSY+C +H+ +
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 106
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 25.6 bits (56), Expect = 2.0
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 26 GSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQI 61
++ + + Y L I ++ D G Y +
Sbjct: 519 DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRA 557
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 24.9 bits (55), Expect = 2.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 44 LQITDLQTTDAGSYQC 59
L I D Q D+G+Y C
Sbjct: 73 LHIRDAQLEDSGTYFC 88
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 25.3 bits (56), Expect = 2.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+ L I+ LQ D +Y CQ
Sbjct: 94 FTLTISSLQPEDFATYYCQ 112
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo
sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A*
2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L
2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L*
3qeg_L ...
Length = 216
Score = 25.3 bits (56), Expect = 2.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
L IT LQT D Y C
Sbjct: 72 ATLGITGLQTGDEADYYCG 90
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 25.2 bits (54), Expect = 2.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 31 TPDKRIQLVDGYN-LQITDLQTTDAGSYQCQI 61
T +Q G + L + + + AG+ C
Sbjct: 47 TSLGAVQSDTGRSVLTVRNASLSAAGTRVCVG 78
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 25.3 bits (55), Expect = 2.4
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L + DA Y C
Sbjct: 72 LILHRATLRDAAVYYCI 88
>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear
protein; NMR {Saccharomyces cerevisiae}
Length = 96
Score = 24.9 bits (54), Expect = 2.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 13 VLAWKRGIAILTAGSTKVTPDKR 35
V+ ++ G+ S TP
Sbjct: 2 VIKFRAGVCEYNEDSRLCTPIPV 24
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 24.9 bits (55), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+ I+ L++ D GSY CQ
Sbjct: 71 SSFTISSLESEDIGSYYCQ 89
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 24.9 bits (55), Expect = 2.7
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+ I ++ + D Y C
Sbjct: 93 FVFTIENMLSEDVADYYCL 111
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 24.5 bits (54), Expect = 2.9
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++++I+++ DAG+Y C
Sbjct: 78 FSIRISNVTPEDAGTYYCV 96
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 25.1 bits (54), Expect = 3.3
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 32 PDKRIQLVDGYN----LQITDLQTTDAGSYQCQIGT 63
P K I++ + + DAG Y+C I T
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT 244
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 24.3 bits (53), Expect = 3.3
Identities = 5/31 (16%), Positives = 7/31 (22%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+I + T G Y C
Sbjct: 51 FMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 24.5 bits (54), Expect = 3.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I ++ D Y CQ
Sbjct: 72 LTIDPVEADDTAIYFCQ 88
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 24.5 bits (54), Expect = 3.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I ++T D G Y CQ
Sbjct: 73 LSINSVETEDFGMYFCQ 89
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 24.6 bits (54), Expect = 3.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+ L I+ L+ D Y CQ
Sbjct: 205 FTLTISRLEPEDFAVYYCQ 223
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 24.6 bits (53), Expect = 4.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++LQ T +Q D+ Y C
Sbjct: 72 FHLQKTSVQEIDSAVYYCA 90
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 24.6 bits (53), Expect = 4.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 44 LQITDLQTTDAGSYQCQI 61
LQ + Q +D+ Y C +
Sbjct: 75 LQKSSAQLSDSALYYCAL 92
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 24.3 bits (53), Expect = 4.3
Identities = 5/31 (16%), Positives = 7/31 (22%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+I + T G Y C
Sbjct: 51 FMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 24.4 bits (53), Expect = 4.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
+ L L +D+G Y C
Sbjct: 74 FILSSKKLLLSDSGFYLCA 92
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 23.9 bits (52), Expect = 5.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 42 YNLQITDLQTTDAGSYQCQIGT 63
+L ++ LQT D Y C
Sbjct: 68 ASLTVSGLQTDDEAVYYCGSLV 89
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 120
Score = 23.7 bits (51), Expect = 6.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 20 IAILTAGSTKV--TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL 76
+LT + +V T D++ Q + GY + A S + P E + L L
Sbjct: 24 PVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 23.8 bits (52), Expect = 6.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++LQ +Q +D+ Y C
Sbjct: 72 FHLQKASVQESDSAVYYCA 90
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling,
immune system; NMR {Homo sapiens}
Length = 523
Score = 24.0 bits (52), Expect = 6.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I+ L+ D Y C
Sbjct: 72 LAISGLEAEDESDYYCA 88
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 23.9 bits (52), Expect = 6.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 44 LQITDLQTTDAGSYQCQIGTLEP 66
L+I ++ D G Y C T P
Sbjct: 92 LKINRVEAEDLGVYFCSQSTHVP 114
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 23.9 bits (52), Expect = 6.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
Y L I+ LQ D +Y C
Sbjct: 209 YTLTISSLQPEDVATYFCY 227
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 24.0 bits (52), Expect = 6.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I D Q D+ +Y C
Sbjct: 201 LHIADSQPGDSATYFCA 217
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 23.8 bits (52), Expect = 6.6
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 26 GSTKVTPDKRIQLVDGYN 43
G+ + KR ++V+ +N
Sbjct: 448 GTMSI--KKRAKIVERFN 463
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 23.8 bits (52), Expect = 6.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L I+ ++T D+ +Y C
Sbjct: 78 LVISPVRTEDSATYYCA 94
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 23.7 bits (51), Expect = 7.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L +T D+ Y C
Sbjct: 102 LTVTSAHPEDSSFYICS 118
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable
domain-like beta-sandwich, stalk region, immune system;
2.80A {Ictalurus punctatus}
Length = 137
Score = 23.8 bits (52), Expect = 7.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
++L I + D G Y C
Sbjct: 76 FDLNIIGAREDDGGEYFCG 94
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 23.7 bits (52), Expect = 8.9
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 17 KRGIAILTAGSTK-----VTPDKRIQLVD 40
G+ ++ AG + P+K ++
Sbjct: 77 PGGVKVVPAGVSLEGLRKANPEKLEDVLT 105
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 23.4 bits (51), Expect = 8.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
+ L+I+ ++ D G Y C G+ P
Sbjct: 76 FTLKISRVEAEDLGIYYCFQGSHFP 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,170,528
Number of extensions: 54958
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 416
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)