RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14103
(78 letters)
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 35.8 bits (82), Expect = 6e-05
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 3 YLSGLPDKNYVLAWKRGIAILTAGSTKVT--PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
D + V + + +++ +L+I +L D+G+Y
Sbjct: 19 NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVT 78
Query: 61 I 61
+
Sbjct: 79 V 79
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 32.9 bits (74), Expect = 0.001
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74
D + L++ +LQ D G YQC I +P + +
Sbjct: 67 DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ 101
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 31.8 bits (71), Expect = 0.002
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 40 DGYNLQITDLQTTDAGSYQCQIGT 63
+ ++ I L+ +D G+Y+C +
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLK 86
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 30.5 bits (68), Expect = 0.006
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
+ L I +L+ D+ +Y C++
Sbjct: 67 FPLIIKNLKIEDSDTYICEV 86
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.9 bits (66), Expect = 0.012
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 35 RIQLVDGYNLQITDLQTTDAGSYQC 59
G L + +Q D+G+Y C
Sbjct: 53 SRWAGMGRRLLLRSVQLHDSGNYSC 77
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 29.5 bits (65), Expect = 0.018
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
++ I +L +D G++ C +
Sbjct: 81 GSIVIHNLDYSDNGTFTCDV 100
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 28.6 bits (63), Expect = 0.034
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 39 VDGYNLQITDLQTTDAGSYQCQ 60
V L I ++ D G Y C+
Sbjct: 51 VTDSGLVIKGVKNGDKGYYGCR 72
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 28.5 bits (62), Expect = 0.043
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 42 YNLQITDLQTTDAGSYQCQIGT 63
L+I +++ +D G Y C
Sbjct: 81 VALRIQNVRFSDEGGYTCFFRD 102
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 28.5 bits (63), Expect = 0.044
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQI--GTLEPKEITHTLEI 75
R + +L + D G Y + + T +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 28.2 bits (62), Expect = 0.065
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 44 LQITDLQTTDAGSYQCQI 61
L I D + +DAG Y ++
Sbjct: 85 LSIRDARMSDAGRYFFRM 102
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.6 bits (60), Expect = 0.077
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
+L I +L ++D Y+ +
Sbjct: 60 GSLTIYNLTSSDEDEYEMESP 80
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.5 bits (55), Expect = 0.39
Identities = 5/19 (26%), Positives = 5/19 (26%)
Query: 44 LQITDLQTTDAGSYQCQIG 62
L I DA Y
Sbjct: 59 LIIEGATKADAAEYSVMTT 77
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.1 bits (56), Expect = 0.41
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 44 LQITDLQTTDAGSYQCQI 61
+ +T+LQ +D G+YQC++
Sbjct: 90 INVTNLQLSDIGTYQCKV 107
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 25.7 bits (55), Expect = 0.41
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
+ L I ++ DAG Y C
Sbjct: 65 GVNTTDKEIEVLYIRNVTFEDAGEYTCL 92
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 26.0 bits (56), Expect = 0.42
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 44 LQITDLQTTDAGSYQCQIGT 63
L + DL+ D+G+Y +
Sbjct: 81 LLLKDLKPEDSGTYNFRFEI 100
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 25.8 bits (55), Expect = 0.49
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
+ L ITD Q G Y+C++
Sbjct: 72 FELHITDAQPAFTGGYRCEV 91
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.8 bits (55), Expect = 0.55
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 40 DGYNLQITDLQTTDAGSYQCQI 61
D + + D G Y +
Sbjct: 92 DRSIFTVEGAEKEDEGVYTVTV 113
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 25.4 bits (54), Expect = 0.60
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 40 DGYNLQITDLQTTDAGSYQCQI 61
+ + + DAG Y+C I
Sbjct: 58 FIASFNVVNTTKRDAGKYRCMI 79
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 25.3 bits (54), Expect = 0.61
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 45 QITDLQTTDAGSYQCQ----IGTLEPKEITHTLE 74
+ ++ +DAG Y CQ T + + T+E
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 25.2 bits (54), Expect = 0.65
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 41 GYNLQITDLQTTDAGSYQCQI 61
G L I + G Y +
Sbjct: 55 GSKLTILAARQEHCGCYTLLV 75
>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 25.2 bits (54), Expect = 0.69
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 42 YNLQITDLQTTDAGSYQCQIGT 63
+ + I L D+G Y+C +G
Sbjct: 74 FVVNIAQLSQDDSGRYKCGLGI 95
>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2
{Pea seedling (Pisum sativum) [TaxId: 3888]}
Length = 93
Score = 24.8 bits (54), Expect = 0.75
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD 40
P+K++VL ++ T V+ ++I +V
Sbjct: 41 PEKDHVLRYE-------THPTLVSIPRKIFVVA 66
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 24.5 bits (52), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 42 YNLQITDLQTTDAGSYQCQ 60
LQI ++ TD G+Y+C+
Sbjct: 56 NYLQIRGIKKTDEGTYRCE 74
>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId:
1789]}
Length = 199
Score = 24.8 bits (53), Expect = 1.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTD 53
+T D + L +G +++I D+
Sbjct: 3 ITGDALVALPEGESVRIADIVPGA 26
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 95
Score = 24.0 bits (52), Expect = 1.5
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD 40
PDK V A+ + V ++ ++
Sbjct: 41 PDKEAVWAFA-------LENKPVDQPRKADVIM 66
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 24.2 bits (52), Expect = 1.8
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
++L + + Y C G
Sbjct: 74 FSLILESATPSQTSVYFCASG 94
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 23.6 bits (50), Expect = 2.1
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
W + R ++L + + +D G+Y C
Sbjct: 39 WLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVPSDKGNYTCV 80
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.6 bits (50), Expect = 2.2
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQI-GTLEPKEITHTLEI 75
D L + ++ G+Y C T K+ T I
Sbjct: 47 LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 92
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 23.7 bits (50), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
PD R +LV G + ++ DAGSYQC
Sbjct: 51 GPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 23.7 bits (50), Expect = 2.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
Y L I ++ D G Y +
Sbjct: 57 YGLTINRVKGDDKGEYTVRA 76
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.6 bits (50), Expect = 2.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
L I+ D +YQC +G
Sbjct: 62 RTLTISQCSLADDAAYQCVVG 82
>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 23.7 bits (51), Expect = 2.3
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 16 WKRG-----IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
W++ IA +L L+I L+T D Y+ I
Sbjct: 32 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 82
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 23.8 bits (50), Expect = 2.3
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQI 61
P + +A ++ + +QI + AG+Y+C++
Sbjct: 33 PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 87
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 23.8 bits (50), Expect = 2.6
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 45 QITDLQTTDAGSYQCQ 60
+ D+G Y CQ
Sbjct: 70 IFDPVTAFDSGEYYCQ 85
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA
polymerase Taq {Thermus aquaticus [TaxId: 271]}
Length = 164
Score = 23.7 bits (50), Expect = 2.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 32 PDKRIQLVDGYNL 44
P R+ LVDG++L
Sbjct: 1 PKGRVLLVDGHHL 13
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 23.5 bits (49), Expect = 2.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
+L Q +D G YQC
Sbjct: 58 GSLVFLRPQASDEGHYQCFA 77
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 23.7 bits (50), Expect = 2.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 30 VTPDKRIQLVDGYNLQITDLQTTD 53
TP+ L G + +L D
Sbjct: 2 FTPESTALLESGVRKPLGELSIGD 25
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 23.1 bits (48), Expect = 3.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 42 YNLQITDLQTTDAGSYQCQIGTLEP 66
+L I + + D+G Y+CQ +
Sbjct: 48 SSLNIVNAKFEDSGEYKCQHQQVNE 72
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 22.9 bits (48), Expect = 4.7
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 41 GYNLQITDLQTTDAGSYQCQ 60
L I ++ D Y C
Sbjct: 62 SSELTIRNVDKNDEAEYVCI 81
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 23.3 bits (49), Expect = 4.8
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQ 45
L G+ + V+ K + + V + + DG NL
Sbjct: 1272 LRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLS 1313
>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 22.8 bits (48), Expect = 5.5
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 44 LQITDLQTTDAGSYQCQ 60
L++ + Y C
Sbjct: 74 LRLLSAAPSQTSVYFCA 90
>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 22.5 bits (47), Expect = 6.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 42 YNLQITDLQTTDAGSYQCQI 61
+ + +TDL+ D+G Y C+I
Sbjct: 70 FTVTMTDLREEDSGHYWCRI 89
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 22.6 bits (48), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG 41
D V +R A + AG+ K D ++ +VDG
Sbjct: 212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG 244
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 22.3 bits (47), Expect = 8.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 42 YNLQITDLQTTDAGSYQCQIG 62
Y L + + G Y C +
Sbjct: 82 YVLTLNKFSKENEGYYFCSVI 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,132
Number of extensions: 9955
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 45
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)