Query psy14104
Match_columns 319
No_of_seqs 177 out of 1835
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 19:39:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 6E-08 2E-12 76.1 6.8 67 244-310 38-105 (137)
2 3b5d_A Multidrug transporter E 98.4 2E-06 6.9E-11 64.9 10.3 69 86-154 36-105 (110)
3 3b5d_A Multidrug transporter E 98.4 1.8E-06 6.3E-11 65.1 9.4 64 245-308 39-103 (110)
4 2i68_A Protein EMRE; transmemb 98.3 1.7E-06 5.9E-11 67.8 7.2 71 84-154 34-105 (137)
5 2ks1_B Epidermal growth factor 54.5 6 0.00021 23.8 1.6 10 309-318 35-44 (44)
6 2l2t_A Receptor tyrosine-prote 52.3 6.9 0.00024 23.6 1.6 10 309-318 34-43 (44)
7 2jwa_A Receptor tyrosine-prote 47.3 10 0.00034 22.8 1.8 6 302-307 28-33 (44)
8 2rdd_B UPF0092 membrane protei 44.6 9.6 0.00033 21.9 1.4 18 299-316 11-28 (37)
9 3l1l_A Arginine/agmatine antip 22.1 1.5E+02 0.005 26.5 6.1 26 291-316 409-434 (445)
10 2h3o_A MERF; membrane protein, 17.0 21 0.00073 23.0 -0.6 45 269-313 10-56 (61)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.62 E-value=6e-08 Score=76.11 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHH-HhHHHHHHHHHHHHhcCCCCchhhhhHHhHHHHhHHHHHhhc
Q psy14104 244 VLSALGQFFIFLTVTEYGPLPCSIV-TTTRKFFTVLGSIIFFGNVMTSRQWIATFIVFTGLFLDSFYS 310 (319)
Q Consensus 244 ~~~~v~~~~~~~~l~~~~a~~~si~-~~~~~v~~i~ls~~~~~e~~s~~~~iG~~li~~Gv~~~~~~~ 310 (319)
++..++++++.+++++.++.++..+ ..+.|+.++++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567788899999999999999888 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=2e-06 Score=64.91 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHh-hhcchHHHHHHHHHhcccccchhhHHHHHHHHHhhhheeeec
Q psy14104 86 AAMTYLLAMVCSNMALQWINYPTQVIG-KSAKPIPVMLLGVLLGRKSYALKKYFFVLLVVIGVALFIYKD 154 (319)
Q Consensus 86 ~~~~~~~~~~~~~~sl~~~~~~~~~i~-~~~~pi~v~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~ 154 (319)
..+++..+..+...++++.|.+.+..+ ....|+.+.+++.+++||++++.+++++.+++.|+.+....+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334567778888999999999998777 899999999999999999999999999999999999886544
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.39 E-value=1.8e-06 Score=65.14 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHH-HhHHHHHHHHHHHHhcCCCCchhhhhHHhHHHHhHHHHHh
Q psy14104 245 LSALGQFFIFLTVTEYGPLPCSIV-TTTRKFFTVLGSIIFFGNVMTSRQWIATFIVFTGLFLDSF 308 (319)
Q Consensus 245 ~~~v~~~~~~~~l~~~~a~~~si~-~~~~~v~~i~ls~~~~~e~~s~~~~iG~~li~~Gv~~~~~ 308 (319)
+..++++++..++|+.+..++..+ ..+.|+.+.++|++++||++|+.+++|+++++.|++..+.
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677888889999999999887 8999999999999999999999999999999999998874
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.28 E-value=1.7e-06 Score=67.77 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHh-hhcchHHHHHHHHHhcccccchhhHHHHHHHHHhhhheeeec
Q psy14104 84 ASAAMTYLLAMVCSNMALQWINYPTQVIG-KSAKPIPVMLLGVLLGRKSYALKKYFFVLLVVIGVALFIYKD 154 (319)
Q Consensus 84 ~~~~~~~~~~~~~~~~sl~~~~~~~~~i~-~~~~pi~v~l~~~l~~~~~~~~~~~~~~~l~~~Gv~l~~~~~ 154 (319)
....+++.++.++.+.+++++|.+.+..+ .+..|++++++++++++|++++.++++++++++|+.+....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33444577888899999999999977766 899999999999999999999999999999999999986543
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=54.52 E-value=6 Score=23.84 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.4
Q ss_pred hcchhhhhhc
Q psy14104 309 YSSKESAKRR 318 (319)
Q Consensus 309 ~~~~~~~~~~ 318 (319)
++++++|++|
T Consensus 35 ~RRr~~~~kR 44 (44)
T 2ks1_B 35 MRRRHIVRKR 44 (44)
T ss_dssp HHTTTCCSCC
T ss_pred hhhhHhhccC
Confidence 4444444443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.26 E-value=6.9 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=4.7
Q ss_pred hcchhhhhhc
Q psy14104 309 YSSKESAKRR 318 (319)
Q Consensus 309 ~~~~~~~~~~ 318 (319)
+++|++|++|
T Consensus 34 ~RRRr~~~kr 43 (44)
T 2l2t_A 34 VRRKSIKKKR 43 (44)
T ss_dssp HHTTCSSCCC
T ss_pred hhhhhhhhcc
Confidence 4554444444
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=47.30 E-value=10 Score=22.85 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.2
Q ss_pred hHHHHH
Q psy14104 302 GLFLDS 307 (319)
Q Consensus 302 Gv~~~~ 307 (319)
|..+..
T Consensus 28 ~l~~~~ 33 (44)
T 2jwa_A 28 GVVFGI 33 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=44.60 E-value=9.6 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=7.8
Q ss_pred HHHhHHHHHhhcchhhhh
Q psy14104 299 VFTGLFLDSFYSSKESAK 316 (319)
Q Consensus 299 i~~Gv~~~~~~~~~~~~~ 316 (319)
++.++++....+.++||+
T Consensus 11 ~~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 344444444345444443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=22.05 E-value=1.5e+02 Score=26.51 Aligned_cols=26 Identities=0% Similarity=-0.118 Sum_probs=18.4
Q ss_pred hhhhHHhHHHHhHHHHHhhcchhhhh
Q psy14104 291 RQWIATFIVFTGLFLDSFYSSKESAK 316 (319)
Q Consensus 291 ~~~iG~~li~~Gv~~~~~~~~~~~~~ 316 (319)
....|..+++.|+.+|.+.+++++|+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 45568888899998888665555443
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=17.03 E-value=21 Score=22.96 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHhcCCCCchhh--hhHHhHHHHhHHHHHhhcchh
Q psy14104 269 TTTRKFFTVLGSIIFFGNVMTSRQ--WIATFIVFTGLFLDSFYSSKE 313 (319)
Q Consensus 269 ~~~~~v~~i~ls~~~~~e~~s~~~--~iG~~li~~Gv~~~~~~~~~~ 313 (319)
....|+..+++|..-.....++.. .+=..-.+.|..+|..+++||
T Consensus 10 CC~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~ 56 (61)
T 2h3o_A 10 SSFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQ 56 (61)
T ss_dssp ------CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566666665543332222211 001222344888887665543
Done!