Query psy14104
Match_columns 319
No_of_seqs 177 out of 1835
Neff 8.9
Searched_HMMs 13730
Date Fri Aug 16 19:39:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14104.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14104hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 26.6 1E+02 0.0074 23.9 7.5 63 82-148 4-66 (248)
2 d1iwga8 f.35.1.1 (A:513-566,A: 14.9 1.7E+02 0.012 21.7 6.4 32 275-306 96-127 (222)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 12.6 30 0.0022 22.5 0.8 20 297-316 29-48 (91)
4 d1lfba_ a.4.1.1 (A:) Hepatocyt 11.3 34 0.0025 21.5 0.8 16 304-319 61-76 (78)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 10.9 2E+02 0.015 20.8 5.6 49 258-306 61-109 (199)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 9.8 64 0.0047 21.0 1.9 22 294-315 37-58 (100)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 9.2 4E+02 0.029 20.6 14.7 11 192-202 279-289 (447)
8 d2iuba2 f.17.3.1 (A:286-349) M 8.2 83 0.006 18.5 1.7 12 300-311 51-62 (64)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 7.3 1.2E+02 0.0085 21.9 2.6 18 300-317 171-188 (189)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.7 1.2E+02 0.0088 19.8 2.2 21 295-315 44-64 (107)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=26.60 E-value=1e+02 Score=23.86 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccchhHHHHhhhcchHHHHHHHHHhcccccchhhHHHHHHHHHhhh
Q psy14104 82 YYASAAMTYLLAMVCSNMALQWINYPTQVIGKSAKPIPVMLLGVLLGRKSYALKKYFFVLLVVIGVA 148 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~sl~~~~~~~~~i~~~~~pi~v~l~~~l~~~~~~~~~~~~~~~l~~~Gv~ 148 (319)
++.++++++.+..+.....+..-+...+.+ ..+.+.++.++++.+|.-+.||+-=.+++..++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 566777777777766666666555555443 255667777888888888888775444444433
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.87 E-value=1.7e+02 Score=21.72 Aligned_cols=32 Identities=9% Similarity=-0.088 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCchhhhhHHhHHHHhHHHH
Q psy14104 275 FTVLGSIIFFGNVMTSRQWIATFIVFTGLFLD 306 (319)
Q Consensus 275 ~~i~ls~~~~~e~~s~~~~iG~~li~~Gv~~~ 306 (319)
...+.+..+.|.+++....+|.++.++...-+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~ 127 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSAKN 127 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhhhH
Confidence 34456667789999999988888866554433
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.60 E-value=30 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=12.1
Q ss_pred hHHHHhHHHHHhhcchhhhh
Q psy14104 297 FIVFTGLFLDSFYSSKESAK 316 (319)
Q Consensus 297 ~li~~Gv~~~~~~~~~~~~~ 316 (319)
.+...|..+|..++.|++|+
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHhhheeeeccCC
Confidence 44566667777666665543
No 4
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=11.30 E-value=34 Score=21.55 Aligned_cols=16 Identities=0% Similarity=0.200 Sum_probs=10.6
Q ss_pred HHHHhhcchhhhhhcC
Q psy14104 304 FLDSFYSSKESAKRRQ 319 (319)
Q Consensus 304 ~~~~~~~~~~~~~~~~ 319 (319)
-+.+||.++++|.+||
T Consensus 61 ~V~~WF~NRR~~~kr~ 76 (78)
T d1lfba_ 61 RVYNWFANRRKEEAFR 76 (78)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566777777776664
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.91 E-value=2e+02 Score=20.78 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHhCchHHHHHHhHHHHHHHHHHHHhcCCCCchhhhhHHhHHHHhHHHH
Q psy14104 258 TEYGPLPCSIVTTTRKFFTVLGSIIFFGNVMTSRQWIATFIVFTGLFLD 306 (319)
Q Consensus 258 ~~~~a~~~si~~~~~~v~~i~ls~~~~~e~~s~~~~iG~~li~~Gv~~~ 306 (319)
+..-+.....+...-.+........++|.+++.....+..+.++...-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 4444444445555555555666667789999988888887776665433
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.79 E-value=64 Score=21.00 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=13.1
Q ss_pred hHHhHHHHhHHHHHhhcchhhh
Q psy14104 294 IATFIVFTGLFLDSFYSSKESA 315 (319)
Q Consensus 294 iG~~li~~Gv~~~~~~~~~~~~ 315 (319)
.++.+++.|+..|..+++++||
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 3444556677777766655554
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.19 E-value=4e+02 Score=20.65 Aligned_cols=11 Identities=0% Similarity=-0.299 Sum_probs=5.0
Q ss_pred hcCCChhhHHH
Q psy14104 192 ESQTKSGHMMV 202 (319)
Q Consensus 192 ~~~~~~~~~~~ 202 (319)
..+.++.+...
T Consensus 279 ~~~~~~~~~~~ 289 (447)
T d1pw4a_ 279 VKHFALDKSSW 289 (447)
T ss_dssp BSCCCHHHHHH
T ss_pred ccccccchhhh
Confidence 33555544433
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.17 E-value=83 Score=18.48 Aligned_cols=12 Identities=0% Similarity=0.337 Sum_probs=4.8
Q ss_pred HHhHHHHHhhcc
Q psy14104 300 FTGLFLDSFYSS 311 (319)
Q Consensus 300 ~~Gv~~~~~~~~ 311 (319)
..++..+.++++
T Consensus 51 ~~~~~~~~~f~r 62 (64)
T d2iuba2 51 VIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHTTTTS
T ss_pred HHHHHHHHHHhc
Confidence 333344443433
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=7.26 E-value=1.2e+02 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=8.0
Q ss_pred HHhHHHHHhhcchhhhhh
Q psy14104 300 FTGLFLDSFYSSKESAKR 317 (319)
Q Consensus 300 ~~Gv~~~~~~~~~~~~~~ 317 (319)
++|....-..+|++||+.
T Consensus 171 l~G~~~g~~~~~~~k~~~ 188 (189)
T d2nr9a1 171 IVGLIWGFIDSKLRKNSL 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccc
Confidence 345544433444444443
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.74 E-value=1.2e+02 Score=19.85 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=11.7
Q ss_pred HHhHHHHhHHHHHhhcchhhh
Q psy14104 295 ATFIVFTGLFLDSFYSSKESA 315 (319)
Q Consensus 295 G~~li~~Gv~~~~~~~~~~~~ 315 (319)
++.+.+.|+..|..++.++++
T Consensus 44 ~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 44 AVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHhhhhhccC
Confidence 334455666777666655443
Done!