RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14104
(319 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 61/342 (17%), Positives = 103/342 (30%), Gaps = 114/342 (33%)
Query: 13 LFYA--GGIFTFYFLFG-------ILQE--KITRGTYGESNEKFTCMLALVFVQCV---- 57
LF A G +FG +E + + TY A + +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSELIRTTL 203
Query: 58 -INYIYAKIM-LLTFLKQGEDSTRSVYY-ASAAMTY-LLAMVCSNMALQWINYPTQVIGK 113
++ + + +L +L + +T Y S ++ L+ ++ Q +Y V K
Sbjct: 204 DAEKVFTQGLNILEWL-ENPSNTPDKDYLLSIPISCPLIGVI------QLAHY--VVTAK 254
Query: 114 SAKPIPVMLLGVLLGRKSYALKKYFFVLLVVIGV--ALFIYKDGKASKEESTNFGFGEFL 171
P L L G G+ A+ I A + +F F
Sbjct: 255 LLGFTPGELRSYLKG-----------ATGHSQGLVTAVAI-----AETDSWESF-FVSVR 297
Query: 172 LILSLLMDGLTGA-VQE---------RMKSES----QTKSGHMMVAMNKWSCLFLGISIL 217
+++L G E + +S + M L IS L
Sbjct: 298 KAITVLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----------LSISNL 344
Query: 218 ITGEIFEFINFVNKYPSIIYQLFLFSVLSALGQFFIFLT-------VTEYGPLPCS---I 267
++ +++N N + L A Q I L V+ GP P S +
Sbjct: 345 TQEQVQDYVNKTNSH------------LPAGKQVEISLVNGAKNLVVS--GP-PQSLYGL 389
Query: 268 VTTTRKFFTVLGS----IIFFGNVMTSRQWIATFIVFTGLFL 305
T RK G I F + R+ + F+ FL
Sbjct: 390 NLTLRKAKAPSGLDQSRIPF-----SERK-----LKFSNRFL 421
Score = 33.5 bits (76), Expect = 0.10
Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 75/224 (33%)
Query: 127 LGRKSYALKKYFFVLLVV-------IGVALFIYKDGKASKEESTN----FG--------F 167
L + +K Y ++ ALF +A E + FG F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALF-----RAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 168 GEFLLIL-----SLLMDGLTGAVQERMKSESQTKSGHMMVAMNKWSCLF-LGISILITGE 221
E L L L+ D L E + +T +F G++IL
Sbjct: 171 EE-LRDLYQTYHVLVGD-LIKFSAETLSELIRTTL--------DAEKVFTQGLNIL---- 216
Query: 222 IFEFINFVNKYPSIIYQLFLFSV--------LSALGQFFIFLTVTEYGP--LPCSIVTTT 271
E++ + P Y L S+ + L + + + + P L + T
Sbjct: 217 --EWLENPSNTPDKDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 272 RKFFTVLGSIIFFGNVMTSRQWIATFIVFTGLFLDSFYSSKESA 315
++ ++ + + W +SF+ S A
Sbjct: 272 GHSQGLVTAVA----IAETDSW------------ESFFVSVRKA 299
Score = 31.9 bits (72), Expect = 0.30
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 37/119 (31%)
Query: 142 LVVIGVALFIYKDGKASKEE---STNFGF-----GEF--LL----ILSLLMDGLT----- 182
L ++ A F + K + + F GE+ L ++S+ +
Sbjct: 1736 LTLMEKAAF-----EDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-ESLVEVVFYR 1789
Query: 183 G-AVQERMKSESQTKSGHMMVAMNKWS-CLFLGISILI---------TGEIFEFINFVN 230
G +Q + + +S + M+A+N L TG + E +N+ N
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-N 1847
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.008
Identities = 51/424 (12%), Positives = 111/424 (26%), Gaps = 149/424 (35%)
Query: 1 MEKLLSSKRLKFLFYAGGIFT-FYFLFGILQEKITRGTYG------ESNEKF-------- 45
+ +LS + + + + + LF L K N KF
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 46 ---TCMLALVFVQCV-----INYIYAK---------IMLLTFLKQGEDSTRSVYYASAAM 88
M+ ++++ N ++AK + L L + + + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GV 158
Query: 89 -----TYLLAMVCSNMALQ--------WINYPTQVIGKSAKP--IPVMLLGVLLG----- 128
T++ VC + +Q W+N + P + ML +L
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 129 ---------------------RKSYALKKYFFVLLVVIGVALFIYKDGKASKEESTNFGF 167
R+ K Y LLV+ + + F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---------LNVQNAKAWNAFNL 264
Query: 168 GEFLLILS---LLMDGLTGAVQERMK--------SESQTKSGHMMVAMNKWSCLFLGISI 216
+L+ + + D L+ A + + + KS ++ K+ L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLL--KY----LDCRP 315
Query: 217 ----------------LITGEIFEFINFVNKYPSIIYQLFLFSVLSALGQFFIFLTVTEY 260
+I I + + + + + + + + L EY
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVNCDKLTTIIESSLNVLEPAEY 371
Query: 261 GPLPCSIVTTTRKFFTVLGSIIFFGNVMTSRQ-----WIATFIVFTGLFLDSFYSSKESA 315
RK F L +F + W + ++ +
Sbjct: 372 -----------RKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLV 417
Query: 316 KRRQ 319
+++
Sbjct: 418 EKQP 421
Score = 34.4 bits (78), Expect = 0.049
Identities = 27/213 (12%), Positives = 56/213 (26%), Gaps = 64/213 (30%)
Query: 66 MLLTFLKQGEDSTRSVYYASAAMTYLLAMV---CSNMALQWINYP-------TQVIGKSA 115
+LL +L L+++ + W N+ T +I S
Sbjct: 306 LLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS- 362
Query: 116 KPIPVMLLGVLLGRKSYALKKYFFVLLVVIGVALFIYKDGKASKEESTNFGFGEFLLI-- 173
L VL + +K F L ++F S + I
Sbjct: 363 -------LNVL---EPAEYRKMFDRL------SVF---------PPSAH--------IPT 389
Query: 174 --LSLLMDGLTGAVQERMKSESQTKSGHMMVAMNKWSCLFL----GISILITGEIFEFI- 226
LSL+ + + + ++ S + K I + + ++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 227 ---NFVNKYPSI-IYQLFLFSVLSALGQFFIFL 255
+ V+ Y + F+ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 29.2 bits (66), Expect = 2.3
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 24/191 (12%)
Query: 124 GVLLGRKSYA-LKKY-FFVLLVVIGVALFIYKDGKASKEESTNFGFGEF----LLILSLL 177
VL R + +K Y + + + I + +F +LI+++L
Sbjct: 631 AVLTSRAIFQRMKNYTIYAVSITIRIVFGFML--------IALIWEFDFSAFMVLIIAIL 682
Query: 178 MDGLTGAV-QERMKSESQTKS---GHMMVAMNKWSCLFLGISILITGEIFEFINFVNKYP 233
DG + ++R+K S + + LG I IF + +
Sbjct: 683 NDGTIMTISKDRVKPSPTPDSWKLKEIFATG-----VVLGGYQAIMTVIFFWAAHKTDFF 737
Query: 234 SIIYQLFLFSVLSALGQFFIFLTVTEYGPLPCSIVTTTRKFFTVLGSIIFFGNVMTSRQW 293
S + + + ++L V+ + + F + + + Q
Sbjct: 738 SDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIA-QL 796
Query: 294 IATFIVFTGLF 304
IAT I +
Sbjct: 797 IATLIAVYANW 807
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.417
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,654,069
Number of extensions: 265020
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 14
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)