Query psy14105
Match_columns 198
No_of_seqs 176 out of 1261
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:40:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3riy_A NAD-dependent deacetyla 100.0 1.5E-59 5E-64 395.3 13.9 187 5-198 17-206 (273)
2 1m2k_A Silent information regu 100.0 3.3E-56 1.1E-60 370.5 12.4 164 5-198 8-171 (249)
3 1yc5_A NAD-dependent deacetyla 100.0 3.5E-56 1.2E-60 369.8 10.9 166 5-198 9-174 (246)
4 1ma3_A SIR2-AF2, transcription 100.0 1.1E-55 3.8E-60 368.1 11.4 166 5-198 11-177 (253)
5 3u31_A SIR2A, transcriptional 100.0 1.9E-54 6.6E-59 366.2 13.7 169 5-198 41-210 (290)
6 1s5p_A NAD-dependent deacetyla 100.0 3E-54 1E-58 356.0 11.3 157 9-197 1-160 (235)
7 3glr_A NAD-dependent deacetyla 100.0 1.3E-52 4.3E-57 354.0 10.8 159 8-195 22-189 (285)
8 1q1a_A HST2 protein; ternary c 100.0 8.9E-52 3E-56 350.6 11.3 164 6-195 15-189 (289)
9 1j8f_A SIRT2, sirtuin 2, isofo 100.0 9.3E-51 3.2E-55 348.7 11.3 160 9-197 43-213 (323)
10 1q14_A HST2 protein; histone d 100.0 1.2E-50 4.1E-55 352.0 9.7 165 6-196 23-198 (361)
11 2hjh_A NAD-dependent histone d 100.0 7.1E-50 2.4E-54 347.1 8.5 184 5-197 42-248 (354)
12 4iao_A NAD-dependent histone d 100.0 1.2E-49 4E-54 353.6 9.0 179 5-197 180-386 (492)
13 3k35_A NAD-dependent deacetyla 100.0 7.9E-46 2.7E-50 315.8 5.2 158 5-198 40-200 (318)
14 3pki_A NAD-dependent deacetyla 100.0 3.7E-45 1.3E-49 314.5 5.2 159 5-198 40-200 (355)
15 2lcq_A Putative toxin VAPC6; P 81.9 0.81 2.8E-05 34.4 2.6 12 122-133 132-143 (165)
16 1tvm_A PTS system, galactitol- 75.2 0.87 3E-05 32.2 0.9 22 3-24 15-36 (113)
17 4ayb_P DNA-directed RNA polyme 73.8 2.1 7.3E-05 25.6 2.2 13 122-134 3-15 (48)
18 1e2b_A Enzyme IIB-cellobiose; 73.1 1 3.5E-05 31.5 0.8 14 10-23 4-17 (106)
19 4rxn_A Rubredoxin; electron tr 72.0 5.1 0.00018 24.6 3.8 13 121-133 2-14 (54)
20 2kdx_A HYPA, hydrogenase/ureas 66.7 3.5 0.00012 29.3 2.5 14 120-133 71-84 (119)
21 1twf_L ABC10-alpha, DNA-direct 66.5 4.1 0.00014 26.4 2.6 12 121-132 27-38 (70)
22 2v3b_B Rubredoxin 2, rubredoxi 64.7 8.3 0.00028 23.7 3.7 13 121-133 2-14 (55)
23 1yuz_A Nigerythrin; rubrythrin 64.4 3.6 0.00012 32.1 2.5 16 118-133 167-182 (202)
24 6rxn_A Rubredoxin; electron tr 63.8 5.1 0.00017 23.8 2.4 14 120-133 2-15 (46)
25 1lko_A Rubrerythrin all-iron(I 61.5 4.5 0.00015 31.2 2.5 14 120-133 153-166 (191)
26 3a43_A HYPD, hydrogenase nicke 60.6 4.4 0.00015 29.7 2.2 20 115-134 63-82 (139)
27 1e8j_A Rubredoxin; iron-sulfur 60.2 11 0.00038 22.8 3.6 13 121-133 2-14 (52)
28 1dx8_A Rubredoxin; electron tr 60.1 12 0.00041 24.2 4.0 15 119-133 4-18 (70)
29 2kn9_A Rubredoxin; metalloprot 58.5 13 0.00044 24.8 4.0 14 120-133 25-38 (81)
30 1s24_A Rubredoxin 2; electron 58.1 11 0.00037 25.5 3.6 14 120-133 33-46 (87)
31 3eyy_A Putative iron uptake re 57.7 9 0.00031 27.9 3.5 52 70-134 49-102 (145)
32 1yk4_A Rubredoxin, RD; electro 57.6 13 0.00046 22.4 3.7 12 122-133 2-13 (52)
33 1mzb_A Ferric uptake regulatio 56.4 11 0.00039 26.9 3.8 54 68-134 48-103 (136)
34 2xig_A Ferric uptake regulatio 55.7 13 0.00043 27.2 4.0 54 68-134 56-111 (150)
35 1vkr_A Mannitol-specific PTS s 55.7 3.1 0.00011 29.9 0.6 17 8-24 12-28 (125)
36 3nbm_A PTS system, lactose-spe 55.0 4 0.00014 28.6 1.0 16 9-24 6-21 (108)
37 3pwf_A Rubrerythrin; non heme 54.7 7.9 0.00027 29.4 2.7 13 121-133 137-149 (170)
38 3mwm_A ZUR, putative metal upt 54.1 14 0.00049 26.5 4.1 57 68-134 43-99 (139)
39 2l2q_A PTS system, cellobiose- 51.9 5.4 0.00018 27.7 1.3 13 11-23 6-18 (109)
40 2w57_A Ferric uptake regulatio 48.4 17 0.0006 26.5 3.8 54 68-134 47-102 (150)
41 3czc_A RMPB; alpha/beta sandwi 45.6 4.5 0.00016 28.1 0.1 16 9-24 18-33 (110)
42 3na7_A HP0958; flagellar bioge 44.5 6.8 0.00023 31.5 1.0 18 111-132 191-208 (256)
43 2gmg_A Hypothetical protein PF 42.0 18 0.00062 25.3 2.7 11 122-132 67-77 (105)
44 4ets_A Ferric uptake regulatio 41.6 18 0.00061 26.9 2.9 54 68-134 64-119 (162)
45 2fe3_A Peroxide operon regulat 41.1 17 0.00059 26.2 2.7 53 70-135 53-106 (145)
46 3h0g_L DNA-directed RNA polyme 39.1 20 0.00069 22.7 2.4 11 122-132 21-31 (63)
47 2o03_A Probable zinc uptake re 37.4 27 0.00093 24.6 3.2 53 69-134 41-95 (131)
48 2gnr_A Conserved hypothetical 31.1 19 0.00064 26.5 1.5 16 117-132 42-57 (145)
49 3iz6_X 40S ribosomal protein S 30.5 36 0.0012 22.8 2.6 36 97-132 3-46 (86)
50 1qxf_A GR2, 30S ribosomal prot 29.7 36 0.0012 21.7 2.4 15 118-132 3-17 (66)
51 3irb_A Uncharacterized protein 28.9 22 0.00076 26.0 1.5 15 118-132 43-57 (145)
52 3h0g_I DNA-directed RNA polyme 24.3 1.4E+02 0.0047 20.6 5.0 15 120-134 24-38 (113)
53 3j21_g 50S ribosomal protein L 23.4 66 0.0022 19.3 2.7 14 167-182 28-42 (51)
54 2jrp_A Putative cytoplasmic pr 22.8 31 0.0011 22.9 1.2 12 122-133 18-29 (81)
55 2ayj_A 50S ribosomal protein L 20.5 93 0.0032 19.1 2.9 13 119-131 16-28 (56)
56 3j20_W 30S ribosomal protein S 20.2 73 0.0025 20.1 2.5 18 115-132 8-25 (63)
No 1
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=1.5e-59 Score=395.27 Aligned_cols=187 Identities=45% Similarity=0.852 Sum_probs=165.9
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.+++|++|||+||||||++|||||||+++|+|+++++++++++++|..+|+.||+||..++..+.+++||.+|++|++|+
T Consensus 17 ~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~~~~~~~Pn~~H~~La~Le 96 (273)
T 3riy_A 17 FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECE 96 (273)
T ss_dssp HHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCcEEEEECcccchhhCCCccccccchhhhCChhhcCCHHHHhhCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcc-cCCCCCCCCCCcccccc
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEA-ICNPNASDVWYSDEEIN 163 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (198)
+.+.+.|++++||||||||||++||+++|+||||++..++|++|++.+...+.|+++.+.+. .|+++. .+..++
T Consensus 97 ~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~ 171 (273)
T 3riy_A 97 TRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGT-----QDASIP 171 (273)
T ss_dssp HHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCCSTTC-----CCCCCC
T ss_pred HhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCCcccc-----cccccc
Confidence 86555589999999999999999999999999999999999999998877667777776543 455443 233455
Q ss_pred CCCCCCC--CCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 164 VNDLPRC--SDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 164 ~~~~P~C--~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
...+|+| | .|||+|||+||||||+||++.+++|
T Consensus 172 ~~~~P~C~~~--~Cgg~lrP~VV~FGE~lp~~~~~~a 206 (273)
T 3riy_A 172 VEKLPRCEEA--GCGGLLRPHVVWFGENLDPAILEEV 206 (273)
T ss_dssp GGGSCBCCGG--GCCCBEEEEECCTTSBCCHHHHHHH
T ss_pred cCCCCCCCCC--CCCCeeCCcEEEeCCcCCHHHHHHH
Confidence 5678999 7 8999999999999999999888764
No 2
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=3.3e-56 Score=370.54 Aligned_cols=164 Identities=42% Similarity=0.735 Sum_probs=149.9
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.+++|++|||+||||||++|||||||+++|+|+++++++++++++|..+|+.||+||..++..+.+++||.+|++|++|+
T Consensus 8 ~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~La~L~ 87 (249)
T 1m2k_A 8 TIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELE 87 (249)
T ss_dssp HHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHhCCCEEEEECchhhhhhCCCCccCCCcCccCCCHHhcccHHHHhcCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999988778999999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccccccC
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINV 164 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
+. |++++||||||||||++||+++|+|+||++..++|+.|++.++... .++.
T Consensus 88 ~~----g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------~~~~ 139 (249)
T 1m2k_A 88 RL----GVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES------------------------APKI 139 (249)
T ss_dssp HT----TCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSS------------------------CCCS
T ss_pred hC----CCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchh------------------------hccC
Confidence 98 9999999999999999999999999999999999999998765321 1223
Q ss_pred CCCCCCCCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 165 NDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 165 ~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
..+|+|| .|||.|||+||||||++|++.+++|
T Consensus 140 ~~~p~C~--~Cgg~lrP~Vv~FgE~lp~~~~~~a 171 (249)
T 1m2k_A 140 PPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRA 171 (249)
T ss_dssp SSCCBCS--SSSSBEEEEECCTTSCCCHHHHHHH
T ss_pred CCCCCCC--CCCCCcCCeEEecCCCCCHHHHHHH
Confidence 3479999 9999999999999999999877653
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=3.5e-56 Score=369.81 Aligned_cols=166 Identities=33% Similarity=0.554 Sum_probs=137.9
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.+++|++|||+||||||++|||||||+++|+|+++++ +++++++|..+|+.+|+||..++..+.+++||.+|++|++|+
T Consensus 9 ~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~~~-~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~Pn~~H~~La~L~ 87 (246)
T 1yc5_A 9 LLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQ-NVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLE 87 (246)
T ss_dssp HHHHCSSEEEEECGGGTGGGTCCCC-----------C-CTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHHHHHHHH
T ss_pred HHHhCCCEEEEECceeehhhCCCCccCCCcccccCCC-ceecHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 999999999999999999999887777999999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccccccC
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINV 164 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
+. |++++||||||||||++||+++|+|+||++..++|+.|++.++... + ...+..
T Consensus 88 ~~----g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------~---------------~~~~~~ 142 (246)
T 1yc5_A 88 EK----GLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVED------V---------------IKKLES 142 (246)
T ss_dssp HT----TSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHH------H---------------HHHTTT
T ss_pred hc----CCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHH------H---------------HHHhcc
Confidence 97 9999999999999999999999999999999999999998764321 0 011223
Q ss_pred CCCCCCCCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 165 NDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 165 ~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
..+|+|| .|||.|||+||||||++|++.+++|
T Consensus 143 ~~~p~C~--~Cgg~lrP~vv~FgE~lp~~~~~~a 174 (246)
T 1yc5_A 143 SDVPLCD--DCNSLIRPNIVFFGENLPQDALREA 174 (246)
T ss_dssp CSSCBCT--TTCCBEEEEECCBTSBCCHHHHHHH
T ss_pred CCCCCCC--CCCCccCcceEECCCCCCHHHHHHH
Confidence 3579999 9999999999999999999877653
No 4
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.1e-55 Score=368.11 Aligned_cols=166 Identities=39% Similarity=0.661 Sum_probs=139.5
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.++++++|||+||||||++||||||||++|+|+++++++++++++|..+|+.+|+||..++..+. ++||.+|++|++|+
T Consensus 11 ~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~-~~Pn~~H~~La~L~ 89 (253)
T 1ma3_A 11 ILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLF-AEPNPAHYAIAELE 89 (253)
T ss_dssp HHHHCSSEEEEECGGGSCC----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHHHHT-CCCCHHHHHHHHHH
T ss_pred HHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccCChhheecHHHHhcCHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999887777 99999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccccccC
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINV 164 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
+. |++.+||||||||||++||+++|+||||++..++|+.|++.++.... ...+..
T Consensus 90 ~~----g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------~~~~~~ 144 (253)
T 1ma3_A 90 RM----GIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEF---------------------VEDFNK 144 (253)
T ss_dssp HT----TSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGT---------------------HHHHHT
T ss_pred hc----CCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHH---------------------HHHhcc
Confidence 98 99999999999999999999999999999999999999997653210 112234
Q ss_pred CCCCCCCCCCCCC-eeccceEEcCCCCChHHHhhC
Q psy14105 165 NDLPRCSDKACGG-LLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 165 ~~~P~C~~~~Cgg-~lrP~vv~fgE~l~~~~~~~a 198 (198)
..+|+|| .||| .|||+||||||++|++.+++|
T Consensus 145 ~~~p~C~--~Cgg~~lrP~Vv~FgE~lp~~~~~~a 177 (253)
T 1ma3_A 145 GEIPRCR--KCGSYYVKPRVVLFGEPLPQRTLFEA 177 (253)
T ss_dssp TCCCCCT--TTCCSCEEEEECCBTSBCCHHHHHHH
T ss_pred CCCCCCC--CCCCccccceEEEeCCCCCHHHHHHH
Confidence 4589999 9999 999999999999999877653
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=1.9e-54 Score=366.23 Aligned_cols=169 Identities=32% Similarity=0.554 Sum_probs=148.5
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCC-CccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRG-DGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARF 83 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~-~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L 83 (198)
.+++|++|||+||||||++|||||||+ .+|+|+++++++++++.+|..+|+.||+||..++.. .+++||.+|++|++|
T Consensus 41 ~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~~p~~~~~~~~f~~~p~~~w~~~~~~~~~-~~a~Pn~~H~aLa~L 119 (290)
T 3u31_A 41 IIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSD-YEIEINNGHVALSTL 119 (290)
T ss_dssp HHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGSCHHHHTBHHHHHHCHHHHHHHHHHHHHH-SCCCCCHHHHHHHHH
T ss_pred HHHhCCCEEEEeCCccccccCCccccccccchhhcCCHHHhhCHHhhhhCHHHHHHHHHHHhhh-ccCCCCHHHHHHHHH
Confidence 467899999999999999999999999 689999999999999999999999999999988766 899999999999999
Q ss_pred HHHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCcccccc
Q psy14105 84 EEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEIN 163 (198)
Q Consensus 84 ~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
++. |++.+||||||||||++||+++|+||||++..++|++|++.++..+. +.. ....+.
T Consensus 120 e~~----g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~-----~~~------------~~~~~~ 178 (290)
T 3u31_A 120 ESL----GYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKI-----MLQ------------KTSHFM 178 (290)
T ss_dssp HHT----TCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTG-----GGS------------TTSSTT
T ss_pred HHc----CCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHh-----hhc------------cccccc
Confidence 997 99999999999999999999999999999999999999987653211 100 001233
Q ss_pred CCCCCCCCCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 164 VNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 164 ~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
...+|+|| |||+|||+||||||++|++.+++|
T Consensus 179 ~~~~P~C~---Cgg~lrPdVV~FGE~lp~~~~~~a 210 (290)
T 3u31_A 179 HQLPPECP---CGGIFKPNIILFGEVVSSDLLKEA 210 (290)
T ss_dssp TSSSCBCT---TSCBEEEEECCBTSBCCHHHHHHH
T ss_pred ccCCCCCC---CCCEECCeEEEcCCCCCHHHHHHH
Confidence 44589999 999999999999999999877653
No 6
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=3e-54 Score=356.00 Aligned_cols=157 Identities=39% Similarity=0.650 Sum_probs=134.4
Q ss_pred CCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHH-
Q psy14105 9 YKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAA--SKAPNKAHYALARFEE- 85 (198)
Q Consensus 9 a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~--~~~Pn~~H~~L~~L~~- 85 (198)
|++|||+||||||++|||||||+++|+|+++.+++++++++|..+|+.+|+||..++..+. +++||.+|++|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~~La~L~~~ 80 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDA 80 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999887764 5999999999999999
Q ss_pred HHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccccccCC
Q psy14105 86 ECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVN 165 (198)
Q Consensus 86 ~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
. |++.+||||||||||++||+++|+||||++..++|++|++.++... .+...
T Consensus 81 ~----g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------~~~~~ 132 (235)
T 1s5p_A 81 L----GDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG------------------------DVTPE 132 (235)
T ss_dssp H----GGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS------------------------CCCSS
T ss_pred h----CCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh------------------------hccCC
Confidence 6 8999999999999999999999999999999999999998765321 12334
Q ss_pred CCCCCCCCCCCCeeccceEEcCCCCChHHHhh
Q psy14105 166 DLPRCSDKACGGLLRPDIVWFGEQLNPQYVKM 197 (198)
Q Consensus 166 ~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~ 197 (198)
.+|+|+ .|||.|||+||||||+ |. .+++
T Consensus 133 ~~p~c~--~Cgg~lrP~vv~FGE~-p~-~~~~ 160 (235)
T 1s5p_A 133 DKCHCC--QFPAPLRPHVVWFGEM-PL-GMDE 160 (235)
T ss_dssp CCC---------CEEEEECCTTSC-CS-SHHH
T ss_pred CCCCCC--CCCCeecCcEEEeCCC-HH-HHHH
Confidence 578999 8999999999999999 74 3543
No 7
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.3e-52 Score=354.01 Aligned_cols=159 Identities=30% Similarity=0.613 Sum_probs=137.7
Q ss_pred cCCcEEEEECCcccccCCCCCCCCCc-cccccCC------cccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHH
Q psy14105 8 WYKNVSQEIAIGISAESGIPTFRGDG-GWWRNNH------VAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYAL 80 (198)
Q Consensus 8 ~a~~ivi~tGAGiS~~sGiPdfr~~~-g~~~~~~------~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L 80 (198)
.+++|||+||||||++||||||||++ |+|+++. ++.+++..+|.++|+.||.|+..+. ..+++||.+|++|
T Consensus 22 ~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~--~~~a~Pn~~H~~L 99 (285)
T 3glr_A 22 ACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELY--PGNYKPNVTHYFL 99 (285)
T ss_dssp SCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHS--TTSCCCCHHHHHH
T ss_pred CCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhh--hccCCCCHHHHHH
Confidence 48999999999999999999999985 9997643 5778899999999999999876532 2478999999999
Q ss_pred HHHHHHHhhCCCceEEEeccccchHhHhC--CCCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCc
Q psy14105 81 ARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYS 158 (198)
Q Consensus 81 ~~L~~~~~~~g~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
++|++. |++.+||||||||||++|| .++|+||||++..++|++|++.++... +
T Consensus 100 a~Le~~----g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~------~--------------- 154 (285)
T 3glr_A 100 RLLHDK----GLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGED------I--------------- 154 (285)
T ss_dssp HHHHHT----TCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGG------G---------------
T ss_pred HHHHHc----CCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHH------H---------------
Confidence 999998 9999999999999999999 479999999999999999998765321 0
Q ss_pred cccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHH
Q psy14105 159 DEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYV 195 (198)
Q Consensus 159 ~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~ 195 (198)
...+....+|+|+ .|||+|||+||||||++|.+.+
T Consensus 155 ~~~i~~~~~P~C~--~Cgg~lrP~IV~FGE~lp~~~~ 189 (285)
T 3glr_A 155 RADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFL 189 (285)
T ss_dssp HHHHHTTCCCBCT--TTCCBEEEEECCTTSBCCGGGG
T ss_pred HHHhhcCCCCCCC--CCCCccCCcEEEeCCcCCHHHH
Confidence 1223455689999 9999999999999999998755
No 8
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=8.9e-52 Score=350.55 Aligned_cols=164 Identities=30% Similarity=0.539 Sum_probs=137.7
Q ss_pred ccc--CCcEEEEECCcccccCCCCCCCCCc-cccccCC------cccccChHhhhhChHHHHHHHHHHHHHhccCCCCHH
Q psy14105 6 GKW--YKNVSQEIAIGISAESGIPTFRGDG-GWWRNNH------VAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKA 76 (198)
Q Consensus 6 ~~~--a~~ivi~tGAGiS~~sGiPdfr~~~-g~~~~~~------~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~ 76 (198)
+++ |++|||+||||||++||||||||++ |+|+++. +++++++++|..+|+.||+|+..+. ..+++||.+
T Consensus 15 i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~~--~~~a~Pn~~ 92 (289)
T 1q1a_A 15 MKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY--PGNFRPSKF 92 (289)
T ss_dssp HHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHHC--SSSCCCCHH
T ss_pred HHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHHh--hCcCCCCHH
Confidence 455 8999999999999999999999995 9998743 4678899999999999999986532 358999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCC
Q psy14105 77 HYALARFEEECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASD 154 (198)
Q Consensus 77 H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
|++|++|++. |++.+||||||||||++||+ ++|+||||++..++|++|++.++... +...+
T Consensus 93 H~~La~L~~~----g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~--~~~~~----------- 155 (289)
T 1q1a_A 93 HYLLKLFQDK----DVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQV--FKSKL----------- 155 (289)
T ss_dssp HHHHHHHHHT----TCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHH--HHHHH-----------
T ss_pred HHHHHHHHhC----CCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHH--HHHHH-----------
Confidence 9999999998 99999999999999999996 58999999999999999998765321 00000
Q ss_pred CCCccccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHH
Q psy14105 155 VWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYV 195 (198)
Q Consensus 155 ~~~~~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~ 195 (198)
...+...+|+|| .|||+|||+||||||++|++.+
T Consensus 156 -----~~~~~~~~P~C~--~Cgg~lrP~vv~FGE~lp~~~~ 189 (289)
T 1q1a_A 156 -----AEHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFS 189 (289)
T ss_dssp -----TCSSCCSCCBCT--TTCCBEEEEECCBTSBCCHHHH
T ss_pred -----hhccCCCCccCC--CCCCEECCCEEEcCCCCCHHHH
Confidence 000234579999 9999999999999999998764
No 9
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=9.3e-51 Score=348.67 Aligned_cols=160 Identities=28% Similarity=0.537 Sum_probs=138.3
Q ss_pred CCcEEEEECCcccccCCCCCCCCC-ccccccCC------cccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHH
Q psy14105 9 YKNVSQEIAIGISAESGIPTFRGD-GGWWRNNH------VAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALA 81 (198)
Q Consensus 9 a~~ivi~tGAGiS~~sGiPdfr~~-~g~~~~~~------~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~ 81 (198)
|++|||+||||||++||||||||+ +|+|+++. ++++++..+|.++|+.||.|+... ...+++||.+|++|+
T Consensus 43 a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~--~~~~a~Pn~~H~aLa 120 (323)
T 1j8f_A 43 CRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKEL--YPGQFKPTICHYFMR 120 (323)
T ss_dssp CCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHH--SSSSCCCCHHHHHHH
T ss_pred CCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHH--hhCcCCCCHHHHHHH
Confidence 899999999999999999999999 49998743 578889999999999999997432 225899999999999
Q ss_pred HHHHHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCC--CCcccccccCCccchhhcccCCCCCCCCCC
Q psy14105 82 RFEEECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSW--CDKVEENRKIPIVPVLDEAICNPNASDVWY 157 (198)
Q Consensus 82 ~L~~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~--C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|++. |++++||||||||||++||+ ++|+||||++..++|++ |++.++... +
T Consensus 121 ~L~~~----g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~------~-------------- 176 (323)
T 1j8f_A 121 LLKDK----GLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSW------M-------------- 176 (323)
T ss_dssp HHHHT----TCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHH------H--------------
T ss_pred HHHhc----CCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHH------H--------------
Confidence 99998 99999999999999999994 79999999999999999 998764310 0
Q ss_pred ccccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHHhh
Q psy14105 158 SDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKM 197 (198)
Q Consensus 158 ~~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~ 197 (198)
...+....+|+|| .|||+|||+||||||++|++.+++
T Consensus 177 -~~~i~~~~~P~C~--~Cgg~lrP~VV~FGE~lp~~~~~~ 213 (323)
T 1j8f_A 177 -KEKIFSEVTPKCE--DCQSLVKPDIVFFGESLPARFFSC 213 (323)
T ss_dssp -HHHHHTTCCCBCT--TTCCBEEEEECCBTSCCCHHHHHH
T ss_pred -HHhhccCCCCCCc--CCCCccCCCEEecCCcCCHHHHHH
Confidence 1123445689999 999999999999999999987765
No 10
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=1.2e-50 Score=352.00 Aligned_cols=165 Identities=30% Similarity=0.538 Sum_probs=125.7
Q ss_pred ccc--CCcEEEEECCcccccCCCCCCCCCc-cccccCC------cccccChHhhhhChHHHHHHHHHHHHHhccCCCCHH
Q psy14105 6 GKW--YKNVSQEIAIGISAESGIPTFRGDG-GWWRNNH------VAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKA 76 (198)
Q Consensus 6 ~~~--a~~ivi~tGAGiS~~sGiPdfr~~~-g~~~~~~------~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~ 76 (198)
+++ |++|||+||||||++||||||||++ |+|+++. ++.++++.+|..+|+.||.||..+. ...++||.+
T Consensus 23 i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~~~~~~--~~~a~Pn~~ 100 (361)
T 1q14_A 23 MKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY--PGNFRPSKF 100 (361)
T ss_dssp HHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHHHTTTS--CCCCCCCHH
T ss_pred HHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHHHHHHh--hCcCCCCHH
Confidence 456 8999999999999999999999995 9998743 4678899999999999999986422 358999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCC
Q psy14105 77 HYALARFEEECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASD 154 (198)
Q Consensus 77 H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
|++|++|++. |++++||||||||||++||+ ++|+||||++..++|+.|++.++... +...+
T Consensus 101 H~aLa~Le~~----g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~--~~~~~----------- 163 (361)
T 1q14_A 101 HYLLKLFQDK----DVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQV--FKSKL----------- 163 (361)
T ss_dssp HHHHHHHHHT----TCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHH--HHHHT-----------
T ss_pred HHHHHHHHhc----CCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHH--HHHHH-----------
Confidence 9999999998 99999999999999999996 58999999999999999998765321 00000
Q ss_pred CCCccccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHHh
Q psy14105 155 VWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVK 196 (198)
Q Consensus 155 ~~~~~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~ 196 (198)
. ..+...+|+|| .|||+|||+||||||++|.+.++
T Consensus 164 ----~-~~~~~~~P~Cp--~Cgg~lrP~VV~FGE~lp~~~~~ 198 (361)
T 1q14_A 164 ----A-EHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFSE 198 (361)
T ss_dssp ----T-SSSCSCCCBCT--TTCCBEEEEECCBTSCCCHHHHH
T ss_pred ----h-hcccCCCCCCc--CCCCEeCCCcccccccCCHHHHH
Confidence 0 00123479999 99999999999999999987654
No 11
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-50 Score=347.14 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=140.5
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccC------CcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNN------HVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~------~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~ 78 (198)
.+++|++|||+||||||++||||||||++|+|+++ ++++++++++|..+|+.||.|+...+ ...++||++|+
T Consensus 42 ~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~~--~~~~~Pn~~H~ 119 (354)
T 2hjh_A 42 KLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVL--PPEKIYSPLHS 119 (354)
T ss_dssp HHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGGC--CCCSCCCHHHH
T ss_pred HHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHHc--cccCCCCHHHH
Confidence 45789999999999999999999999999999874 57789999999999999999884321 23678999999
Q ss_pred HHHHHHHHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccc---------cCCccchhhcc-
Q psy14105 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENR---------KIPIVPVLDEA- 146 (198)
Q Consensus 79 ~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~---------~~~~~~~~~~~- 146 (198)
+|++|++. |++.+||||||||||++||+ ++|+||||++..++|++|++.++.. ..|.|+...+.
T Consensus 120 aLa~Le~~----g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~~~~ 195 (354)
T 2hjh_A 120 FIKMLQMK----GKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKR 195 (354)
T ss_dssp HHHHHHHT----TCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHHH
T ss_pred HHHHHHHc----CCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCcCccccccc
Confidence 99999998 99999999999999999996 6999999999999999999865432 23444433210
Q ss_pred ---cCCCCCCCCC--CccccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHHhh
Q psy14105 147 ---ICNPNASDVW--YSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKM 197 (198)
Q Consensus 147 ---~~~~~~~~~~--~~~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~ 197 (198)
.|+....+.- ...... ....+.|. .|+|.|||+||||||++|++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~c~g~lrPdVV~FGE~lp~~~~~~ 248 (354)
T 2hjh_A 196 REYFPEGYNNKVGVAASQGSM-SERPPYIL--NSYGVLKPDITFFGEALPNKFHKS 248 (354)
T ss_dssp HHHCCC------------------CCTTSC--TTTTBEEEEECCBTSBCCHHHHHH
T ss_pred ccccccccccccccccccccc-cccccccc--ccCCeeCCChhhccccCCHHHHHH
Confidence 1111000000 000001 12346688 899999999999999999887664
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-49 Score=353.56 Aligned_cols=179 Identities=22% Similarity=0.344 Sum_probs=143.8
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccC------CcccccChHhhhhChHHHHHHHHHHHHHh-ccCCCCHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNN------HVAHIANIESFKENPGRVWAFYNYRRQQA-ASKAPNKAH 77 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~------~~~~~~~~~~f~~~p~~~w~~~~~~~~~~-~~~~Pn~~H 77 (198)
.+++|++|||+|||||||+||||||||++|+|+++ .+++++++++|..+|+.||.|+.. .+ ..++||++|
T Consensus 180 ~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~---~~~~~~~Pn~aH 256 (492)
T 4iao_A 180 KLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANM---VLPPEKIYSPLH 256 (492)
T ss_dssp HHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGG---GCCCSSCCCHHH
T ss_pred HHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHH---hhCCcCCCCHHH
Confidence 45789999999999999999999999999999875 578999999999999999887643 23 367899999
Q ss_pred HHHHHHHHHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccc---------cCCccchhhcc
Q psy14105 78 YALARFEEECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENR---------KIPIVPVLDEA 146 (198)
Q Consensus 78 ~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~---------~~~~~~~~~~~ 146 (198)
++|++|++. |++.+||||||||||++||+ ++|+||||++..++|++|++.++.. ..|.|+...+.
T Consensus 257 ~aLa~Le~~----G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg~~ 332 (492)
T 4iao_A 257 SFIKMLQMK----GKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKK 332 (492)
T ss_dssp HHHHHHHHT----TCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHH
T ss_pred HHHHHHHHC----CCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCCCcccccc
Confidence 999999998 99999999999999999995 7999999999999999999876532 24566554310
Q ss_pred ----------cCCCCCCCCCCccccccCCCCCCCCCCCCCCeeccceEEcCCCCChHHHhh
Q psy14105 147 ----------ICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKM 197 (198)
Q Consensus 147 ----------~~~~~~~~~~~~~~~~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~ 197 (198)
.++++.. .........|.|+ .|||.|||+||||||+||++.+++
T Consensus 333 ~~~~~~~~~~~~dg~~~-----~~~~~~~~~~~c~--~cgG~LRPdIVfFGE~LP~~~~~~ 386 (492)
T 4iao_A 333 RREYFPEGYNNKVGVAA-----SQGSMSERPPYIL--NSYGVLKPDITFFGEALPNKFHKS 386 (492)
T ss_dssp HHHHSTTCCCCC-------------CCTTCCTTCC--TTTTBEEESSCCBTSBCCHHHHHH
T ss_pred ccccccccccccccccc-----ccccccccccccc--cCCCcCCCCEEECCCCCCHHHHHH
Confidence 1121110 0011223468899 899999999999999999987764
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-46 Score=315.83 Aligned_cols=158 Identities=27% Similarity=0.381 Sum_probs=116.4
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.+++|++|||+||||||++|||||||+++|+|+.... ..+|+..|. +.+++||.+|++|++|+
T Consensus 40 ~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~---------~~~p~~~~~--------f~~a~Pn~~H~aLa~Le 102 (318)
T 3k35_A 40 LVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEER---------GLAPKFDTT--------FESARPTQTHMALVQLE 102 (318)
T ss_dssp HHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTT---------TCCCCCSSC--------TTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCEEEEeccccChhhCCCccccCCCcchhhhc---------cCCHHHHHH--------hhhCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999985321 112322222 34789999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccc-c
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDE-E 161 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 161 (198)
+. |++.+||||||||||++||+ ++|+||||++.+++|++|++.+...... ... .+. ++. .
T Consensus 103 ~~----g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~--~~~---~~~--------p~~~~ 165 (318)
T 3k35_A 103 RV----GLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVV--GTM---GLK--------ATGRL 165 (318)
T ss_dssp HT----TCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCC--SCC---SSC--------EEEEE
T ss_pred Hc----CCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhh--hhc---ccC--------CCCCc
Confidence 98 99999999999999999997 6899999999999999999876542110 000 000 000 0
Q ss_pred ccCCCCCCCCCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 162 INVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 162 ~~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
-+....+.|+ .|||.|||+||||||++|.+.+++|
T Consensus 166 C~~~~~~~c~--~CgG~LRPdVV~FGE~lP~~~~~~a 200 (318)
T 3k35_A 166 CTVAKARGLR--ACRGELRDTILDWEDSLPDRDLALA 200 (318)
T ss_dssp CCC----------CCCEEEECCCCTTCCCCHHHHHHH
T ss_pred Cccccccccc--CcCCeeCCCEEEccCcCCHHHHHHH
Confidence 0011234467 8999999999999999999887653
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=3.7e-45 Score=314.45 Aligned_cols=159 Identities=27% Similarity=0.380 Sum_probs=120.0
Q ss_pred ccccCCcEEEEECCcccccCCCCCCCCCccccccCCcccccChHhhhhChHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14105 5 VGKWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARFE 84 (198)
Q Consensus 5 ~~~~a~~ivi~tGAGiS~~sGiPdfr~~~g~~~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~L~~L~ 84 (198)
.+++|++|||+||||||++|||||||+++|+|+.... ..+|+..|. +.+++||.+|++|++|+
T Consensus 40 ~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~---------~~~p~~~~~--------f~~a~Pn~~H~aLa~Le 102 (355)
T 3pki_A 40 LVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEER---------GLAPKFDTT--------FESARPTQTHMALVQLE 102 (355)
T ss_dssp HHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHT---------TCCCCCSSC--------TTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCEEEEeccccchhhCCCccccCCCccchhhc---------cCChHHHHH--------HhhCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999985321 112321122 34789999999999999
Q ss_pred HHHhhCCCceEEEeccccchHhHhCC--CCccccccccceeeeCCCCcccccccCCccchhhcccCCCCCCCCCCccccc
Q psy14105 85 EECIRQNKSFVLFTQNVDGYHQAAGS--RNVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEI 162 (198)
Q Consensus 85 ~~~~~~g~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
+. |++.+||||||||||++||+ ++|+||||++..++|++|++.+...... ... .+.++ ....
T Consensus 103 ~~----g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~--~~~---~~~~~-------~~~C 166 (355)
T 3pki_A 103 RV----GLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVV--GTM---GLKAT-------GRLC 166 (355)
T ss_dssp HT----TCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCC--SCC---SSCEE-------EEEC
T ss_pred Hc----CCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhh--hhc---ccCCC-------CCcc
Confidence 98 99999999999999999997 6899999999999999999876543210 000 00000 0000
Q ss_pred cCCCCCCCCCCCCCCeeccceEEcCCCCChHHHhhC
Q psy14105 163 NVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198 (198)
Q Consensus 163 ~~~~~P~C~~~~Cgg~lrP~vv~fgE~l~~~~~~~a 198 (198)
.....+.|+ .|||.|||+||||||+||.+.+++|
T Consensus 167 ~~~~~~~~~--~CgG~LRPdVV~FGE~lP~~~~~~A 200 (355)
T 3pki_A 167 TVAKARGLR--ACRGELRDTILDWEDSLPDRDLALA 200 (355)
T ss_dssp CCCCBTTBC--CCCCEEEECCCCTTSCCCHHHHHHH
T ss_pred ccccccccc--cCCCccCCCEEECCCcCCHHHHHHH
Confidence 011234567 8999999999999999999877653
No 15
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=81.88 E-value=0.81 Score=34.42 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.7
Q ss_pred eeeeCCCCcccc
Q psy14105 122 RTKCSWCDKVEE 133 (198)
Q Consensus 122 ~~~C~~C~~~~~ 133 (198)
..+|..|++.+.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 578999999764
No 16
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=75.24 E-value=0.87 Score=32.19 Aligned_cols=22 Identities=0% Similarity=-0.029 Sum_probs=17.2
Q ss_pred ccccccCCcEEEEECCcccccC
Q psy14105 3 FSVGKWYKNVSQEIAIGISAES 24 (198)
Q Consensus 3 ~~~~~~a~~ivi~tGAGiS~~s 24 (198)
|+.....++|++.||+|+|++.
T Consensus 15 ~~~~~~~kkIlvvC~sG~gTS~ 36 (113)
T 1tvm_A 15 LYFQGSKRKIIVACGGAVATST 36 (113)
T ss_dssp CCCSCSSEEEEEESCSCSSHHH
T ss_pred HhhcccccEEEEECCCCHHHHH
Confidence 4455566789999999999754
No 17
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=73.81 E-value=2.1 Score=25.60 Aligned_cols=13 Identities=23% Similarity=0.384 Sum_probs=9.0
Q ss_pred eeeeCCCCccccc
Q psy14105 122 RTKCSWCDKVEEN 134 (198)
Q Consensus 122 ~~~C~~C~~~~~~ 134 (198)
...|..|++.++.
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 4579999998764
No 18
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=73.06 E-value=1 Score=31.53 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=12.5
Q ss_pred CcEEEEECCccccc
Q psy14105 10 KNVSQEIAIGISAE 23 (198)
Q Consensus 10 ~~ivi~tGAGiS~~ 23 (198)
++|++.+|||+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999975
No 19
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=72.00 E-value=5.1 Score=24.63 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=10.8
Q ss_pred ceeeeCCCCcccc
Q psy14105 121 WRTKCSWCDKVEE 133 (198)
Q Consensus 121 ~~~~C~~C~~~~~ 133 (198)
...+|..|+.+|.
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4579999999876
No 20
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=66.69 E-value=3.5 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.7
Q ss_pred cceeeeCCCCcccc
Q psy14105 120 LWRTKCSWCDKVEE 133 (198)
Q Consensus 120 ~~~~~C~~C~~~~~ 133 (198)
-..++|.+|++.+.
T Consensus 71 p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 71 KVELECKDCSHVFK 84 (119)
T ss_dssp CCEEECSSSSCEEC
T ss_pred cceEEcCCCCCEEe
Confidence 34688999998754
No 21
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=66.47 E-value=4.1 Score=26.43 Aligned_cols=12 Identities=17% Similarity=0.388 Sum_probs=9.0
Q ss_pred ceeeeCCCCccc
Q psy14105 121 WRTKCSWCDKVE 132 (198)
Q Consensus 121 ~~~~C~~C~~~~ 132 (198)
....|..|+...
T Consensus 27 v~Y~C~~CG~~~ 38 (70)
T 1twf_L 27 LKYICAECSSKL 38 (70)
T ss_dssp CCEECSSSCCEE
T ss_pred EEEECCCCCCcc
Confidence 345799999864
No 22
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=64.70 E-value=8.3 Score=23.70 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=10.9
Q ss_pred ceeeeCCCCcccc
Q psy14105 121 WRTKCSWCDKVEE 133 (198)
Q Consensus 121 ~~~~C~~C~~~~~ 133 (198)
..++|..|+.+|.
T Consensus 2 ~~y~C~~CGyvYd 14 (55)
T 2v3b_B 2 RKWQCVVCGFIYD 14 (55)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEEeCCCCeEEC
Confidence 4689999999875
No 23
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=64.43 E-value=3.6 Score=32.11 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=12.1
Q ss_pred cccceeeeCCCCcccc
Q psy14105 118 GSLWRTKCSWCDKVEE 133 (198)
Q Consensus 118 G~~~~~~C~~C~~~~~ 133 (198)
-....++|..||.++.
T Consensus 167 ~~~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHK 182 (202)
T ss_dssp CSCCEEECSSSCCEEE
T ss_pred CCCcEEEECCCCCEEc
Confidence 3455799999999753
No 24
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.82 E-value=5.1 Score=23.80 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.2
Q ss_pred cceeeeCCCCcccc
Q psy14105 120 LWRTKCSWCDKVEE 133 (198)
Q Consensus 120 ~~~~~C~~C~~~~~ 133 (198)
+..++|..||.+++
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 35679999999875
No 25
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=61.52 E-value=4.5 Score=31.20 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.3
Q ss_pred cceeeeCCCCcccc
Q psy14105 120 LWRTKCSWCDKVEE 133 (198)
Q Consensus 120 ~~~~~C~~C~~~~~ 133 (198)
...++|..||.++.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 44799999999764
No 26
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=60.60 E-value=4.4 Score=29.72 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=13.7
Q ss_pred ccccccceeeeCCCCccccc
Q psy14105 115 ELHGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 115 elHG~~~~~~C~~C~~~~~~ 134 (198)
++.-.-..++|.+||+.+..
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EEEEECCEEEETTTCCEEEG
T ss_pred EEEecCCcEECCCCCCEEec
Confidence 33344457899999998653
No 27
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=60.18 E-value=11 Score=22.82 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=10.8
Q ss_pred ceeeeCCCCcccc
Q psy14105 121 WRTKCSWCDKVEE 133 (198)
Q Consensus 121 ~~~~C~~C~~~~~ 133 (198)
..++|..|+.+|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4689999999875
No 28
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.10 E-value=12 Score=24.15 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.2
Q ss_pred ccceeeeCCCCcccc
Q psy14105 119 SLWRTKCSWCDKVEE 133 (198)
Q Consensus 119 ~~~~~~C~~C~~~~~ 133 (198)
....++|..|+.+|+
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 456789999999875
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=58.49 E-value=13 Score=24.82 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.9
Q ss_pred cceeeeCCCCcccc
Q psy14105 120 LWRTKCSWCDKVEE 133 (198)
Q Consensus 120 ~~~~~C~~C~~~~~ 133 (198)
...++|..|+.+|+
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 46799999999876
No 30
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=58.06 E-value=11 Score=25.51 Aligned_cols=14 Identities=14% Similarity=0.428 Sum_probs=11.9
Q ss_pred cceeeeCCCCcccc
Q psy14105 120 LWRTKCSWCDKVEE 133 (198)
Q Consensus 120 ~~~~~C~~C~~~~~ 133 (198)
...++|..|+.+|+
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 56799999999876
No 31
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.68 E-value=9 Score=27.90 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=33.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCcccc--ccccceeeeCCCCccccc
Q psy14105 70 SKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL--HGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 70 ~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 134 (198)
...+...|+.|..|++. |.+..+-..| | ...|++ +..-.++.|.+||+....
T Consensus 49 ~is~~TVYR~L~~L~e~----Glv~~i~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 49 GINISTVYRTLELLEEL----GLVSHAHLGH--G-------APTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHH----TSEEEEECGG--G-------CEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred CCCHhHHHHHHHHHHHC----CcEEEEEeCC--C-------ceEEEeCCCCCceEEEECCCCCEEEe
Confidence 45566889999999998 8766665432 1 011222 123356899999998654
No 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=57.65 E-value=13 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=10.2
Q ss_pred eeeeCCCCcccc
Q psy14105 122 RTKCSWCDKVEE 133 (198)
Q Consensus 122 ~~~C~~C~~~~~ 133 (198)
.++|..|+.+|.
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 578999999875
No 33
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.37 E-value=11 Score=26.91 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=34.2
Q ss_pred hccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCcccc--ccccceeeeCCCCccccc
Q psy14105 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL--HGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 68 ~~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 134 (198)
.....+...|+.|..|++. |.+..+-..| + ...|++ +..-.++.|.+||+..+.
T Consensus 48 ~~~is~aTVYR~L~~L~e~----Glv~~~~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 48 GEDVGLATVYRVLTQFEAA----GLVVRHNFDG--G-------HAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp TCCCCHHHHHHHHHHHHHH----TSEEEECSSS--S-------SCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHC----CcEEEEEeCC--C-------ceEEEeCCCCcceEEEECCCCCEEEe
Confidence 3455667889999999998 7755543322 1 123333 112356899999997654
No 34
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.74 E-value=13 Score=27.22 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=35.9
Q ss_pred hccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCcccc--ccccceeeeCCCCccccc
Q psy14105 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL--HGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 68 ~~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 134 (198)
.....+...|+.|..|++. |.+..+-..|-- ..|++ +..-.++.|.+||++...
T Consensus 56 ~~~is~aTVYR~L~~L~e~----Glv~~~~~~~~~---------~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 56 DKNTSISSVYRILNFLEKE----NFISVLETSKSG---------RRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp STTCCHHHHHHHHHHHHHT----TSEEEEEETTTE---------EEEEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCCCHhhHHHHHHHHHHC----CcEEEEEeCCCc---------eEEEecCCCCceEEEECCCCCEEEe
Confidence 3456677889999999998 877666554421 12222 122367999999997654
No 35
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=55.67 E-value=3.1 Score=29.94 Aligned_cols=17 Identities=6% Similarity=0.220 Sum_probs=14.4
Q ss_pred cCCcEEEEECCcccccC
Q psy14105 8 WYKNVSQEIAIGISAES 24 (198)
Q Consensus 8 ~a~~ivi~tGAGiS~~s 24 (198)
..++|++.||+||+++.
T Consensus 12 ~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCEEEECCSSSSHHHH
T ss_pred cccEEEEECCCcHHHHH
Confidence 45789999999999865
No 36
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=54.96 E-value=4 Score=28.64 Aligned_cols=16 Identities=13% Similarity=-0.236 Sum_probs=13.0
Q ss_pred CCcEEEEECCcccccC
Q psy14105 9 YKNVSQEIAIGISAES 24 (198)
Q Consensus 9 a~~ivi~tGAGiS~~s 24 (198)
..+|+++++||+|++-
T Consensus 6 ~mkIlL~C~aGmSTsl 21 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQ 21 (108)
T ss_dssp CEEEEEEESSSSHHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3579999999999753
No 37
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=54.68 E-value=7.9 Score=29.35 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.5
Q ss_pred ceeeeCCCCcccc
Q psy14105 121 WRTKCSWCDKVEE 133 (198)
Q Consensus 121 ~~~~C~~C~~~~~ 133 (198)
..++|..||.++.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4688999999764
No 38
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=54.06 E-value=14 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=34.8
Q ss_pred hccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCccccccccceeeeCCCCccccc
Q psy14105 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 68 ~~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 134 (198)
.....+...|+.|..|++. |.+..+-..+--..++.... ++.-.++.|.+||+....
T Consensus 43 ~~~is~aTVYR~L~~L~e~----Glv~~~~~~~g~~~Y~~~~~------~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 43 GDAVGLTTVYRTLQSLADA----GEVDVLRTAEGESVYRRCST------GDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp TCCCCHHHHHHHHHHHHHT----TSSEEEECTTSCEEEECCSC------SSCCEEEEETTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHC----CCEEEEEcCCCceEEEECCC------CCCccEEEECCCCCEeec
Confidence 3455667889999999998 87666554221112221110 012356899999997654
No 39
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=51.91 E-value=5.4 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=11.5
Q ss_pred cEEEEECCccccc
Q psy14105 11 NVSQEIAIGISAE 23 (198)
Q Consensus 11 ~ivi~tGAGiS~~ 23 (198)
+|++.||+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 4999999999975
No 40
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=48.42 E-value=17 Score=26.45 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred hccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCcccc--ccccceeeeCCCCccccc
Q psy14105 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL--HGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 68 ~~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 134 (198)
.....+...|+.|..|++. |.+..+-..+ + ...|++ +..-.++.|..||++.+.
T Consensus 47 ~~~is~aTVYR~L~~L~e~----Glv~~~~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 47 GEEIGLATVYRVLNQFDDA----GIVTRHHFEG--G-------KSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp TCCCCHHHHHHHHHHHHHT----TSEEEEECGG--G-------CEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHC----CcEEEEEeCC--C-------ceEEEecCCCceeEEEECCCCCEEEe
Confidence 3456677889999999997 7765554322 1 112332 122356899999997654
No 41
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=45.57 E-value=4.5 Score=28.14 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.5
Q ss_pred CCcEEEEECCcccccC
Q psy14105 9 YKNVSQEIAIGISAES 24 (198)
Q Consensus 9 a~~ivi~tGAGiS~~s 24 (198)
.++|++.||+|+|++.
T Consensus 18 ~~kIlvvC~sG~gTS~ 33 (110)
T 3czc_A 18 MVKVLTACGNGMGSSM 33 (110)
T ss_dssp CEEEEEECCCCHHHHH
T ss_pred CcEEEEECCCcHHHHH
Confidence 4679999999999764
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.47 E-value=6.8 Score=31.49 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=12.9
Q ss_pred CCccccccccceeeeCCCCccc
Q psy14105 111 RNVIELHGSLWRTKCSWCDKVE 132 (198)
Q Consensus 111 ~~v~elHG~~~~~~C~~C~~~~ 132 (198)
.-|+.++|. .|..|+-..
T Consensus 191 ~avv~v~~~----~C~GC~~~l 208 (256)
T 3na7_A 191 TSIVTIKKQ----ACGGCFIRL 208 (256)
T ss_dssp GSEEECBTT----BCTTTCCBC
T ss_pred ceEEEeeCC----ccCCCCeee
Confidence 347777765 699998754
No 43
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.98 E-value=18 Score=25.29 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=9.1
Q ss_pred eeeeCCCCccc
Q psy14105 122 RTKCSWCDKVE 132 (198)
Q Consensus 122 ~~~C~~C~~~~ 132 (198)
..+|.+||..+
T Consensus 67 p~~C~~CG~~F 77 (105)
T 2gmg_A 67 PAQCRKCGFVF 77 (105)
T ss_dssp CCBBTTTCCBC
T ss_pred CcChhhCcCee
Confidence 56899999975
No 44
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.59 E-value=18 Score=26.87 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=32.6
Q ss_pred hccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCccccc--cccceeeeCCCCccccc
Q psy14105 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELH--GSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 68 ~~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 134 (198)
.....+...|+.|..|++. |.+..+-. ++ | ...|++- ..-.++.|.+||+....
T Consensus 64 ~~~is~aTVYRtL~~L~e~----Glv~~i~~---~~-----~-~~~Y~~~~~~~H~HliC~~CG~v~e~ 119 (162)
T 4ets_A 64 DLNVGIATVYRTLNLLEEA----EMVTSISF---GS-----A-GKKYELANKPHHDHMICKNCGKIIEF 119 (162)
T ss_dssp GGCCCHHHHHHHHHHHHHT----TSEEECC--------------CCEEECCCCCCEEEEETTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHC----CCEEEEEe---CC-----C-ceEEEeCCCCCccEEEECCCCCEEEe
Confidence 4456677889999999987 76544432 21 1 1123321 23456899999997654
No 45
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.11 E-value=17 Score=26.23 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=33.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCccccc-cccceeeeCCCCcccccc
Q psy14105 70 SKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELH-GSLWRTKCSWCDKVEENR 135 (198)
Q Consensus 70 ~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~elH-G~~~~~~C~~C~~~~~~~ 135 (198)
...+...|+.|..|++. |.+..+-..|-- ..|++. +.-.++.|.+||+..+..
T Consensus 53 ~is~aTVYR~L~~L~e~----Glv~~~~~~~~~---------~~Y~~~~~~H~HliC~~Cg~v~~~~ 106 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRES----GLVKELTYGDAS---------SRFDFVTSDHYHAICENCGKIVDFH 106 (145)
T ss_dssp TCCHHHHHHHHHHHHHT----TSEEEECCTTSC---------CEEEECCCCEEEEEETTTCCEEECC
T ss_pred CCChhhHHHHHHHHHHC----CCEEEEeeCCCc---------eEEECCCCCcceEEECCCCCEEEec
Confidence 45566889999999987 776555443311 122221 122468999999986643
No 46
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.08 E-value=20 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=7.9
Q ss_pred eeeeCCCCccc
Q psy14105 122 RTKCSWCDKVE 132 (198)
Q Consensus 122 ~~~C~~C~~~~ 132 (198)
...|..|+...
T Consensus 21 ~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 21 IYLCADCGARN 31 (63)
T ss_dssp CCBCSSSCCBC
T ss_pred EEECCCCCCee
Confidence 35788998754
No 47
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.40 E-value=27 Score=24.63 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=34.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhhCCCceEEEeccccchHhHhCCCCcccc--ccccceeeeCCCCccccc
Q psy14105 69 ASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL--HGSLWRTKCSWCDKVEEN 134 (198)
Q Consensus 69 ~~~~Pn~~H~~L~~L~~~~~~~g~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 134 (198)
....+...|+.|..|++. |.+..+-..|-- ..+++ ++.-.++.|.+||+..+.
T Consensus 41 ~~is~~TVYR~L~~L~e~----Glv~~~~~~~~~---------~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 41 ENIGLTTVYRTLQSMASS----GLVDTLHTDTGE---------SVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCCHHHHHHHHHHHHTT----TSEEEEECTTSC---------EEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCCHhhHHHHHHHHHHC----CCEEEEEeCCCc---------eEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 355667889999999987 776665543321 12332 123467899999997653
No 48
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.08 E-value=19 Score=26.48 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=12.0
Q ss_pred ccccceeeeCCCCccc
Q psy14105 117 HGSLWRTKCSWCDKVE 132 (198)
Q Consensus 117 HG~~~~~~C~~C~~~~ 132 (198)
.|.+.-.+|.+|+..+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 4667777899999853
No 49
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.50 E-value=36 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=11.4
Q ss_pred EeccccchHhHhCC-------CCc-cccccccceeeeCCCCccc
Q psy14105 97 FTQNVDGYHQAAGS-------RNV-IELHGSLWRTKCSWCDKVE 132 (198)
Q Consensus 97 iTqNiD~L~~~aG~-------~~v-~elHG~~~~~~C~~C~~~~ 132 (198)
..+.+|=||--+-. +++ -+..+.+-.++|..|....
T Consensus 3 ~~~~~DLl~P~~e~e~~khK~k~Lv~~PnS~Fm~VkCp~C~~~~ 46 (86)
T 3iz6_X 3 LSNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNIT 46 (86)
T ss_dssp ------------------------------CEEEEECTTTCCEE
T ss_pred cccchhccCCCHHHHhhhhhheeeccCCCCcEeEEECCCCCCee
Confidence 45677777743321 222 2356667779999999854
No 50
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=29.70 E-value=36 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=11.5
Q ss_pred cccceeeeCCCCccc
Q psy14105 118 GSLWRTKCSWCDKVE 132 (198)
Q Consensus 118 G~~~~~~C~~C~~~~ 132 (198)
+.+-.++|..|....
T Consensus 3 S~Fm~VKCp~C~niq 17 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ 17 (66)
T ss_dssp CCEEEEECTTTCCEE
T ss_pred ceeEEEECCCCCCce
Confidence 456678999999854
No 51
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=28.89 E-value=22 Score=26.00 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=9.9
Q ss_pred cccceeeeCCCCccc
Q psy14105 118 GSLWRTKCSWCDKVE 132 (198)
Q Consensus 118 G~~~~~~C~~C~~~~ 132 (198)
|.+.-.+|.+|+..+
T Consensus 43 grL~~~rC~~CG~~~ 57 (145)
T 3irb_A 43 NKIIGSKCSKCGRIF 57 (145)
T ss_dssp TCCEEEECTTTCCEE
T ss_pred CeEEEEEeCCCCcEE
Confidence 445556788888753
No 52
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.28 E-value=1.4e+02 Score=20.61 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=11.1
Q ss_pred cceeeeCCCCccccc
Q psy14105 120 LWRTKCSWCDKVEEN 134 (198)
Q Consensus 120 ~~~~~C~~C~~~~~~ 134 (198)
...+.|.+|+.....
T Consensus 24 ~~~~~C~~C~y~~~~ 38 (113)
T 3h0g_I 24 VLRLACRNCDYSEIA 38 (113)
T ss_dssp CCCEECSSSCCEECC
T ss_pred eeEEECCCCCCeEEc
Confidence 346889999987653
No 53
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.40 E-value=66 Score=19.32 Aligned_cols=14 Identities=43% Similarity=0.963 Sum_probs=9.6
Q ss_pred CCCCCCCCCCC-eeccc
Q psy14105 167 LPRCSDKACGG-LLRPD 182 (198)
Q Consensus 167 ~P~C~~~~Cgg-~lrP~ 182 (198)
+-.|. +||. .|||-
T Consensus 28 aw~Cr--KCG~~~lr~k 42 (51)
T 3j21_g 28 AKKCR--KCGYKRLRPK 42 (51)
T ss_dssp CSSCS--SSSSCCCEEE
T ss_pred ceecC--CCCCcccccc
Confidence 45699 8985 47763
No 54
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.83 E-value=31 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=7.5
Q ss_pred eeeeCCCCcccc
Q psy14105 122 RTKCSWCDKVEE 133 (198)
Q Consensus 122 ~~~C~~C~~~~~ 133 (198)
..+|..|++.+.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 456777777543
No 55
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=20.52 E-value=93 Score=19.09 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=9.5
Q ss_pred ccceeeeCCCCcc
Q psy14105 119 SLWRTKCSWCDKV 131 (198)
Q Consensus 119 ~~~~~~C~~C~~~ 131 (198)
++....|..|+..
T Consensus 16 ~~~k~ICrkC~AR 28 (56)
T 2ayj_A 16 VFLKKVCRKCGAL 28 (56)
T ss_dssp SCCCEEETTTCCE
T ss_pred HhchhhhccccCc
Confidence 4456789999875
No 56
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.18 E-value=73 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.0
Q ss_pred ccccccceeeeCCCCccc
Q psy14105 115 ELHGSLWRTKCSWCDKVE 132 (198)
Q Consensus 115 elHG~~~~~~C~~C~~~~ 132 (198)
+..+.+-.++|..|....
T Consensus 8 ~PnS~Fm~VkCp~C~~~q 25 (63)
T 3j20_W 8 MPRSRFLRVKCIDCGNEQ 25 (63)
T ss_dssp CCSCCEEEEECSSSCCEE
T ss_pred CCCCcEEEEECCCCCCee
Confidence 356777889999999853
Done!