RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14105
(198 letters)
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 252 bits (646), Expect = 2e-85
Identities = 83/180 (46%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
G+SAESG+PTFRG GG+WR +A +F NP RVW FY+YRR+ SK PN H
Sbjct: 31 GVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHR 90
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
A+A E +Q + V+ TQN+D H+ AG++N++E+HGSL++T+C+ C V EN K P
Sbjct: 91 AIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSP 150
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
I P L A + D I V LPRC + CGGLLRP +VWFGE L+P ++
Sbjct: 151 ICPALSGKG----APEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEV 206
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 226 bits (579), Expect = 1e-75
Identities = 75/202 (37%), Positives = 98/202 (48%), Gaps = 35/202 (17%)
Query: 1 MDFSVGKWYKNVSQEIAI----GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGR 56
MD + K S+ + G+SAESGIPTFRG G W +AN ++F ++P +
Sbjct: 1 MDEKLLKTIAE-SKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEK 59
Query: 57 VWAFYNYRRQQAASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIEL 116
VW +Y +R ++ + PNKAH A A E R L TQNVD H+ AGSRNVI L
Sbjct: 60 VWKWYAWRMEKVFNAQPNKAHQAFAELE----RLGVLKCLITQNVDDLHERAGSRNVIHL 115
Query: 117 HGSLWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACG 176
HGSL +C+ C+ E P +P LP+C CG
Sbjct: 116 HGSLRVVRCTSCNNSFEVESAPKIP------------------------PLPKCDK--CG 149
Query: 177 GLLRPDIVWFGEQLNPQYVKMA 198
LLRP +VW GE L P + A
Sbjct: 150 SLLRPGVVWAGEMLPPDVLDRA 171
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 210 bits (538), Expect = 2e-69
Identities = 66/181 (36%), Positives = 89/181 (49%), Gaps = 29/181 (16%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GISAESGIPTFRG+ G WR +A+I FK NP W F + + ++ PN AHY
Sbjct: 25 GISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAE-PNPAHY 83
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
A+A E R + TQN+D HQ AGSR V+ELHGS+ + C C +
Sbjct: 84 AIAELE----RMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHET------- 132
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGG-LLRPDIVWFGEQLNPQYVKM 197
D E+ N ++PRC + CG ++P +V FGE L + +
Sbjct: 133 --------------YDWSEFVEDFNKGEIPRC--RKCGSYYVKPRVVLFGEPLPQRTLFE 176
Query: 198 A 198
A
Sbjct: 177 A 177
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 210 bits (536), Expect = 3e-69
Identities = 61/174 (35%), Positives = 79/174 (45%), Gaps = 31/174 (17%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASK--APNKA 76
GISAESGI TFR G W + V +A E F +P V AFYN RR+Q PN A
Sbjct: 11 GISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAA 70
Query: 77 HYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRK 136
H ALA+ ++ F+L TQN+D H+ AG+ NVI +HG L + +CS +
Sbjct: 71 HLALAKLQD---ALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ------ 121
Query: 137 IPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQL 190
V ++ D C LRP +VWFGE
Sbjct: 122 ------------------VLDWTGDVTPEDKCHCCQ--FPAPLRPHVVWFGEMP 155
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 205 bits (525), Expect = 7e-67
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 19 GISAESGIPTFRG-DGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAH 77
G SAES IP+FRG W I F + P ++W + N H
Sbjct: 55 GTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSDYEIE-INNGH 113
Query: 78 YALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKI 137
AL+ E + TQNVDG H+A+G+ VI LHG+++ C C+K+ + KI
Sbjct: 114 VALSTLE----SLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKI 169
Query: 138 PIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKM 197
+ P C CGG+ +P+I+ FGE ++ +K
Sbjct: 170 ML-----------------QKTSHFMHQLPPECP---CGGIFKPNIILFGEVVSSDLLKE 209
Query: 198 A 198
A
Sbjct: 210 A 210
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 199 bits (509), Expect = 5e-65
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GIS SGIP FRG G ++ + +I+ F +P + F PN AH
Sbjct: 23 GISTPSGIPDFRGPNGIYKKYSQN-VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHV 81
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
LA+ E + + TQN+D HQ AGS+ VIELHG++ C C+K +
Sbjct: 82 LLAKLE----EKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDV- 136
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
+++ +D+P C D C L+RP+IV+FGE L ++ A
Sbjct: 137 --------------------IKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALREA 174
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 159 bits (403), Expect = 1e-48
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 35/189 (18%)
Query: 19 GISAESGIPTFRGDG-GWWRNNHVAH------IANIESFKENPGRVWAFYNYRRQQAASK 71
GIS GIP FR G G + N + +++ F+ +P + + +
Sbjct: 30 GISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA--KELYPGNF 87
Query: 72 APNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRN--VIELHGSLWRTKCSWCD 129
P+K HY L F+ ++ ++TQN+D + AG ++ +IE HGS C C
Sbjct: 88 RPSKFHYLLKLFQ----DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCG 143
Query: 130 KVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQ 189
KV E + D +C CG L++P IV+FGE
Sbjct: 144 KVYP------------------PQVFKSKLAEHPIKDFVKCDV--CGELVKPAIVFFGED 183
Query: 190 LNPQYVKMA 198
L + +
Sbjct: 184 LPDSFSETW 192
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 155 bits (394), Expect = 5e-47
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 37/182 (20%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GIS SGIP FRG G W E P F + R P + H
Sbjct: 54 GISTASGIPDFRGPHGVWTM---------EERGLAPKFDTTFESAR--------PTQTHM 96
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCDKVEENRK 136
AL + E R L +QNVDG H +G + ELHG+++ +C+ C +
Sbjct: 97 ALVQLE----RVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKC-----KTQ 147
Query: 137 IPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVK 196
V+ + V +AC G LR I+ + + L + +
Sbjct: 148 YVRDTVVGTMGLKA-------TGRLCTVAKARGL--RACRGELRDTILDWEDSLPDRDLA 198
Query: 197 MA 198
+A
Sbjct: 199 LA 200
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 156 bits (395), Expect = 9e-47
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 37/182 (20%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GIS SGIP FRG G W E P F + R P + H
Sbjct: 54 GISTASGIPDFRGPHGVWTM---------EERGLAPKFDTTFESAR--------PTQTHM 96
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCDKVEENRK 136
AL + E R L +QNVDG H +G + ELHG+++ +C+ C +
Sbjct: 97 ALVQLE----RVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKC-----KTQ 147
Query: 137 IPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVK 196
V+ + V +AC G LR I+ + + L + +
Sbjct: 148 YVRDTVVGTMGLKA-------TGRLCTVAKARGL--RACRGELRDTILDWEDSLPDRDLA 198
Query: 197 MA 198
+A
Sbjct: 199 LA 200
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 154 bits (390), Expect = 1e-46
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 40/190 (21%)
Query: 19 GISAESGIPTFRGDG-GWWRNNHVAH------IANIESFKENPGRVWAFYNYRRQQAASK 71
GIS SGIP FR G G + N I + F NP F+ ++
Sbjct: 33 GISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNP---KPFFTLAKELYPGN 89
Query: 72 A-PNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWC 128
PN HY L + + L+TQN+DG + +G + ++E HG+ C+ C
Sbjct: 90 YKPNVTHYFLRLLHD----KGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC 145
Query: 129 DKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGE 188
+ ++ + +PRC C G+++PDIV+FGE
Sbjct: 146 QRP---------------------FPGEDIRADVMADRVPRCPV--CTGVVKPDIVFFGE 182
Query: 189 QLNPQYVKMA 198
L +++
Sbjct: 183 PLPQRFLLHV 192
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 154 bits (391), Expect = 4e-46
Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 28/201 (13%)
Query: 19 GISAESGIPTFRGDGGWWRNN------HVAHIANIESFKENPGRVWAFYNYRRQQAASKA 72
G+S GIP FR G++ + N F +P + N
Sbjct: 56 GVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEK--I 113
Query: 73 PNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCDK 130
+ H + + + K +TQN+D AG + +++ HGS C C
Sbjct: 114 YSPLHSFIKMLQ----MKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHW 169
Query: 131 VE---------ENRKIPIVPVLDEAIC----NPNASDVWYSDEEINVNDLPRCSDKACGG 177
N ++P+ P + + V + + ++++ P G
Sbjct: 170 NLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILN-SYG 228
Query: 178 LLRPDIVWFGEQLNPQYVKMA 198
+L+PDI +FGE L ++ K
Sbjct: 229 VLKPDITFFGEALPNKFHKSI 249
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 150 bits (380), Expect = 8e-45
Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 19 GISAESGIPTFRGDG-GWWRNNHVAH------IANIESFKENPGRVWAFYNYRRQQAASK 71
GIS +GIP FR G + N H I I FK++P +A +
Sbjct: 53 GISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALA--KELYPGQF 110
Query: 72 APNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCD 129
P HY + ++ + +TQN+D + AG +++E HG+ + + C
Sbjct: 111 KPTICHYFMRLLKD----KGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSAS 166
Query: 130 KVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQ 189
C W E+I P+C D C L++PDIV+FGE
Sbjct: 167 ------------------CRHEYPLSWM-KEKIFSEVTPKCED--CQSLVKPDIVFFGES 205
Query: 190 LNPQYVKMA 198
L ++
Sbjct: 206 LPARFFSCM 214
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 150 bits (381), Expect = 1e-44
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 35/199 (17%)
Query: 9 YKNVSQEIAIGISAESGIPTFRGDG-GWWRNNHVAH------IANIESFKENPGRVWAFY 61
V + GIS GIP FR G G + N + +++ F+ +P +
Sbjct: 28 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 87
Query: 62 NYRRQQAASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRN--VIELHGS 119
+ + P+K HY L F+ ++ ++TQN+D + AG ++ +IE HGS
Sbjct: 88 --KELYPGNFRPSKFHYLLKLFQ----DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGS 141
Query: 120 LWRTKCSWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLL 179
C C KV E + D +C CG L+
Sbjct: 142 FAHCHCIGCGKVYP------------------PQVFKSKLAEHPIKDFVKCDV--CGELV 181
Query: 180 RPDIVWFGEQLNPQYVKMA 198
+P IV+FGE L + +
Sbjct: 182 KPAIVFFGEDLPDSFSETW 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.016
Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 74/203 (36%)
Query: 41 VAHIANIESFKENPGRV--WAFY-NYRRQQAA---SKAPNKAHYALARFE---------- 84
+A + ESF + + F+ R +A S P+ +L E
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 85 -------EECIRQ-NK--------SFVLFTQNVDGYHQAAGSRNVIELHG---SLWRTKC 125
++ + + N L N G++N++ + G SL+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLV--N--------GAKNLV-VSGPPQSLYGLNL 391
Query: 126 SWCDKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVND--LP-----------RCSD 172
+ RK LD+ S + +S+ ++ ++ LP SD
Sbjct: 392 TL-------RKAKAPSGLDQ-------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 173 KACGGLLRPDIVWFGEQLN-PQY 194
L++ ++ + + + P Y
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVY 460
Score = 26.6 bits (58), Expect = 7.9
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 27/100 (27%)
Query: 13 SQEIAIGISAESGIPTFR-----GDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQ 67
SQE +G+ + D + + I +I NP + + + +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDI--VINNPVNLTIHFGGEKGK 1682
Query: 68 AASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQA 107
IR+N S ++F VDG +
Sbjct: 1683 R-------------------IRENYSAMIFETIVDGKLKT 1703
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.25
Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 44/155 (28%)
Query: 40 HVAHIANIESFKENPGRV--WAFYNYRRQQAASKAPNKAHYALARFEEECIRQN-KSFVL 96
++ IA ES ++ W N + ++ +L E R+ +
Sbjct: 329 RLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIES------SLNVLEPAEYRKMFDRLSV 380
Query: 97 FTQNV-----------------------DGYHQAA-----GSRNVIELHGSLWRTKCSWC 128
F + + H+ + + I + K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 129 DKVEENRKI----PIVPVLDEAICNPNASDV-WYS 158
++ +R I I D P D +YS
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 29.5 bits (66), Expect = 0.73
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 7/112 (6%)
Query: 7 KWYKNVSQEIAIGISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQ 66
+Y I S ++ P G+ G + + + + F
Sbjct: 161 DYYLKHEPTPDIVFSPDAEYPIINGEQGIFT----LEFSFKNDDTKGDYVLDKFKAGIAT 216
Query: 67 QAASKAPNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHG 118
P ++ + E ++ L + +DG + I L G
Sbjct: 217 NV---TPQVTRATISGPDLEAVKLAYESFLADKELDGSFEINDESADIVLIG 265
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 25.7 bits (56), Expect = 6.2
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 46 NIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
+++ P + ++F YR + + +A +
Sbjct: 53 LVDALLMPPNKPYSFARYRTTEESKRAYVTLNG 85
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet,
beta-meander region, transferase; 1.60A {Homo sapiens}
Length = 355
Score = 26.7 bits (59), Expect = 6.5
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 48 ESFKENPGRVWAFYNYRRQQAASKAPNKAHYALARF 83
+ + + FY R+Q A + +Y L+ F
Sbjct: 127 AAVPQAAEPIATFYGLRQQAENDSASTEPYYCLSDF 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.441
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,228,414
Number of extensions: 183775
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 25
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)