RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14105
(198 letters)
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 152 bits (384), Expect = 1e-46
Identities = 83/180 (46%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
G+SAESG+PTFRG GG+WR +A +F NP RVW FY+YRR+ SK PN H
Sbjct: 25 GVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHR 84
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
A+A E +Q + V+ TQN+D H+ AG++N++E+HGSL++T+C+ C V EN K P
Sbjct: 85 AIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSP 144
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
I P L A + D I V LPRC + CGGLLRP +VWFGE L+P ++
Sbjct: 145 ICPALS----GKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEV 200
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 111 bits (277), Expect = 6e-31
Identities = 61/178 (34%), Positives = 79/178 (44%), Gaps = 31/178 (17%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKA--PNKA 76
GISAESGI TFR G W + V +A E F +P V AFYN RR+Q PN A
Sbjct: 11 GISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAA 70
Query: 77 HYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRK 136
H ALA+ ++ F+L TQN+D H+ AG+ NVI +HG L + +CS +
Sbjct: 71 HLALAKLQDAL---GDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ------ 121
Query: 137 IPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQY 194
V ++ D C LRP +VWFGE
Sbjct: 122 ------------------VLDWTGDVTPEDKCHCCQ--FPAPLRPHVVWFGEMPLGMD 159
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 95.6 bits (237), Expect = 6e-25
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GIS SGIP FRG G ++ + ++ +I+ F +P + F PN AH
Sbjct: 23 GISTPSGIPDFRGPNGIYK-KYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHV 81
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
LA+ E + + TQN+D HQ AGS+ VIELHG++ C C+K
Sbjct: 82 LLAKLE----EKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEK-------- 129
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
D + C L+RP+IV+FGE L ++ A
Sbjct: 130 ---------------KYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREA 174
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 94.9 bits (235), Expect = 9e-25
Identities = 68/180 (37%), Positives = 91/180 (50%), Gaps = 30/180 (16%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
G+SAESGIPTFRG G W +AN ++F ++P +VW +Y +R ++ + PNKAH
Sbjct: 22 GVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQ 81
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
A A E R L TQNVD H+ AGSRNVI LHGSL +C+ C+
Sbjct: 82 AFA----ELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCN--------- 128
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
+ + + + LP+C CG LLRP +VW GE L P + A
Sbjct: 129 ---------------NSFEVESAPKIPPLPKCDK--CGSLLRPGVVWAGEMLPPDVLDRA 171
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 90.7 bits (224), Expect = 4e-23
Identities = 58/180 (32%), Positives = 79/180 (43%), Gaps = 27/180 (15%)
Query: 19 GISAESGIPTFRGDGGWWRNNHVAHIANIESFKENPGRVWAFYNYRRQQAASKAPNKAHY 78
GISAESGIPTFRG+ G WR +A+I FK NP R + ++ + PN AHY
Sbjct: 25 GISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP-RAFWEFSMEMKDKLFAEPNPAHY 83
Query: 79 ALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRNVIELHGSLWRTKCSWCDKVEENRKIP 138
A+A R + TQN+D HQ AGSR V+ELHGS+ + C C + + +
Sbjct: 84 AIAEL----ERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFV 139
Query: 139 IVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQLNPQYVKMA 198
E K ++P +V FGE L + + A
Sbjct: 140 EDFNKGE----------------------IPRCRKCGSYYVKPRVVLFGEPLPQRTLFEA 177
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 91.7 bits (227), Expect = 5e-23
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 36/189 (19%)
Query: 19 GISAESGIPTFRG-DGGWWRNNHVAHIA------NIESFKENPGRVWAFYNYRRQQAASK 71
GIS +GIP FR G + N H+ I FK++P +A +
Sbjct: 53 GISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFAL--AKELYPGQF 110
Query: 72 APNKAHYALARFEEECIRQNKSFVLFTQNVDGYHQAAG--SRNVIELHGSLWRTKCSWCD 129
P HY + +++ +TQN+D + AG +++E HG+ + + C
Sbjct: 111 KPTICHYFMRLLKDK----GLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSAS 166
Query: 130 KVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGEQ 189
E + + + + C L++PDIV+FGE
Sbjct: 167 CRHEYPLSWMKEKIFSEVTPKC---------------------EDCQSLVKPDIVFFGES 205
Query: 190 LNPQYVKMA 198
L ++
Sbjct: 206 LPARFFSCM 214
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 81.5 bits (200), Expect = 2e-19
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 37/190 (19%)
Query: 19 GISAESGIPTFRGDG-GWWRN------NHVAHIANIESFKENPGRVWAFYNYRRQQAASK 71
GIS GIP FR G G + N + + +++ F+ +P FY ++
Sbjct: 30 GISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDP---LPFYTLAKELYPGN 86
Query: 72 APNKA-HYALARFEEECIRQNKSFVLFTQNVDGYHQAAGSRN--VIELHGSLWRTKCSWC 128
HY L F+ ++ ++TQN+D + AG ++ +IE HGS C C
Sbjct: 87 FRPSKFHYLLKLFQ----DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 142
Query: 129 DKVEENRKIPIVPVLDEAICNPNASDVWYSDEEINVNDLPRCSDKACGGLLRPDIVWFGE 188
KV E + D +C L++P IV+FGE
Sbjct: 143 GKVYP------------------PQVFKSKLAEHPIKDFVKCDVCGE--LVKPAIVFFGE 182
Query: 189 QLNPQYVKMA 198
L + +
Sbjct: 183 DLPDSFSETW 192
>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 55
Score = 23.1 bits (50), Expect = 6.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 112 NVIELHGSLWRTKCSWCDKVEENRKIPIVPVLDE 145
HG ++ + K EN +P+V V+ E
Sbjct: 20 GTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRE 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.441
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,693
Number of extensions: 37683
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 13
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)