BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14107
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 4 NWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIV 63
+W K +VF+ +++ E + E +Q G + IFD++G A+Q TP+ AK+I
Sbjct: 121 HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 180
Query: 64 DWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD-RDSLHKYLNPE 122
L DS PL+V+GIH++N+P IF+ VF++ KP L EK++ RI H + + SL ++ P+
Sbjct: 181 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PD 239
Query: 123 CLPEHYKG 130
LP Y G
Sbjct: 240 ILPLEYGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 4 NWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIV 63
+W K +VF+ +++ E + E +Q G + IFD++G A+Q TP+ AK+I
Sbjct: 105 HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 164
Query: 64 DWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD-RDSLHKYLNPE 122
L DS PL+V+GIH++N+P IF+ VF+ KP L EK++ RI H + + SL ++ P+
Sbjct: 165 AVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHF-PD 223
Query: 123 CLPEHYKG 130
LP Y G
Sbjct: 224 ILPLEYGG 231
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%)
Query: 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRI 62
+NW+ +++ DE+ + LE + +Q+ G +I + G ++QQA + +++
Sbjct: 163 ENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKM 222
Query: 63 VDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPE 122
VD LQDS P R K IH ++QP F + + KP L+ KL R+F H D ++ ++
Sbjct: 223 VDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDEN 282
Query: 123 CLPEHYKGTL 132
LP + GTL
Sbjct: 283 ILPSDFGGTL 292
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%)
Query: 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRI 62
+NW+ +++ DE+ + LE + +Q+ G +I + G + QQA + ++
Sbjct: 163 ENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKX 222
Query: 63 VDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPE 122
VD LQDS P K IH ++QP F + + KP L+ KL R+F H D ++ ++
Sbjct: 223 VDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDEN 282
Query: 123 CLPEHYKGTL 132
LP + GTL
Sbjct: 283 ILPSDFGGTL 292
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 33 QVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92
+V +I+D +GL L+ W+ + +++ P +K + VV P +F + + L
Sbjct: 145 KVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNL 204
Query: 93 FKPLLREKLRNRIFFHSTD-RDSLHKYLNPECLPEHYKGTL 132
KP L E R +I + ++ L K+++P+ +P Y GT+
Sbjct: 205 IKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTM 245
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 33 QVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92
+V +I+D +GL L+ W+ + +++ P +K + VV P +F + + L
Sbjct: 145 KVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNL 204
Query: 93 FKPLLREKLRNRIFFHSTD-RDSLHKYLNPECLPEHYKGTL 132
KP L E R +I + ++ L K+++P+ +P Y GT+
Sbjct: 205 IKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTM 245
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 33 QVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92
+V +I+D +GL L+ W+ + +++ P +K + VV P +F + + L
Sbjct: 145 KVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNL 204
Query: 93 FKPLLREKLRNRIFFHSTD-RDSLHKYLNPECLPEHYKGT 131
KP L E R +I + ++ L K+++P+ +P Y GT
Sbjct: 205 IKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93
+ + + D+ G+SL A+ ++ K + D Q+ P R+ ++++ P F+ +F +
Sbjct: 182 IETSCTVLDLKGISLSNAYHVL-SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMV 240
Query: 94 KPLLREKLRNRIF-FHSTDRDSLHKYLNPECLPEHYKGT 131
KP L ++IF S+ + L K + E LP Y GT
Sbjct: 241 KPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGT 279
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93
+ + + D+ G+SL A+ ++ K + D Q+ P R+ ++++ P F+ +F +
Sbjct: 182 IETSCTVLDLKGISLSNAYHVL-SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMV 240
Query: 94 KPLLREKLRNRIF-FHSTDRDSLHKYLNPECLPEHYKGT 131
KP L ++IF S+ + L K + E LP Y GT
Sbjct: 241 KPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGT 279
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93
V + I D+ G+S+ A+ ++ + Q+ P R+ +++N P F+ F LF
Sbjct: 167 VETSCTIMDLKGISISSAYSVM-SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 225
Query: 94 KPLLREKLRNRIF-FHSTDRDSLHKYLNPECLPEHYKGTLDV 134
KP L ++IF S+ + L K + E LP + G +V
Sbjct: 226 KPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEV 267
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 62 IVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNP 121
+ DW + +VK +PT N+ +AL + ++FF + DR++L + L
Sbjct: 75 LTDWXK-----QVKETLARTRPTAVNLFWALNR-------XEKVFFENADRENLFEILEN 122
Query: 122 ECLPEHYKGTLDVSLVTAIGQYG 144
E L Y+ D+ + AIG+ G
Sbjct: 123 EALKXAYE---DIEVNKAIGKNG 142
>pdb|4AMU|A Chain A, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|B Chain B, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|C Chain C, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|D Chain D, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4ANF|A Chain A, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|B Chain B, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|C Chain C, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|D Chain D, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
Length = 365
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 42 DMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKL 101
++ G SL FT + ++D D + +G+H+ N+P + + LF+ ++
Sbjct: 27 NLKGRSLDSLLNFTTEEVQHLIDLSIDLKKAKYQGLHINNRPLVGKNIAILFQ---KDST 83
Query: 102 RNRIFFH--STDRDSLHKYLNP 121
R R F ++D + Y+ P
Sbjct: 84 RTRCAFEVAASDLGAGVTYIGP 105
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 22/75 (29%)
Query: 75 KGIHVV--------NQPTIFN-------MVFALFKPLLREKLRNRIFFHSTDRDSLHKYL 119
KGIH+V QPT F+ MVFA+ + N+ +F +TD D +
Sbjct: 256 KGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPR-------ENKTYFGTTDTDYQGDFT 308
Query: 120 NPECLPEHYKGTLDV 134
+P+ E LDV
Sbjct: 309 DPKVTQEDVDYLLDV 323
>pdb|1OQ1|A Chain A, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|B Chain B, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|C Chain C, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|D Chain D, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
Length = 223
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHV------VNQPTIFNM 88
G Q+ FD L L V W ++ P GI V + QP + +
Sbjct: 29 GGGQISFDDHSLHLSHVQD-----EAHFVFWCPETFP---DGIIVTWDFSPIEQPGLCXL 80
Query: 89 VFA--------LFKPLLREKLRNRIFFHSTDRDSLH 116
FA LF P LR++ +HS D ++LH
Sbjct: 81 FFAAAGIRGEDLFDPSLRKRTGTYPEYHSGDINALH 116
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 50 QAWQFTPTFAKRIVDWLQDSIPLRVKGI 77
Q W F TF VDW SI V G+
Sbjct: 160 QGWSFADTFHTFAVDWRPGSITWSVDGV 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,641,797
Number of Sequences: 62578
Number of extensions: 170366
Number of successful extensions: 353
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 15
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)