Query psy14107
Match_columns 151
No_of_seqs 163 out of 1035
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:43:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 6.6E-33 1.4E-37 196.0 5.1 129 3-131 27-159 (159)
2 smart00516 SEC14 Domain in hom 100.0 2.3E-30 5E-35 182.8 11.6 129 2-133 27-158 (158)
3 KOG1471|consensus 100.0 8.8E-31 1.9E-35 204.5 6.2 132 4-135 128-260 (317)
4 KOG1470|consensus 100.0 5.1E-29 1.1E-33 191.8 10.0 128 2-133 117-244 (324)
5 cd00170 SEC14 Sec14p-like lipi 100.0 2.2E-28 4.7E-33 171.0 11.5 122 9-131 36-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 2.8E-14 6.1E-19 100.1 3.7 118 13-135 28-147 (149)
7 KOG4406|consensus 98.3 3.3E-06 7.1E-11 67.5 7.1 98 15-121 115-212 (467)
8 PF14213 DUF4325: Domain of un 77.2 12 0.00026 22.7 5.4 48 39-91 20-69 (74)
9 COG0052 RpsB Ribosomal protein 74.6 7.2 0.00016 29.8 4.6 65 68-134 30-103 (252)
10 TIGR02364 dha_pts dihydroxyace 71.7 25 0.00054 23.8 6.4 50 34-95 59-108 (125)
11 PF11964 SpoIIAA-like: SpoIIAA 71.3 16 0.00034 23.4 5.2 77 9-96 10-87 (109)
12 PF03641 Lysine_decarbox: Poss 63.9 9.6 0.00021 26.0 3.1 62 57-119 65-133 (133)
13 COG2961 ComJ Protein involved 63.3 10 0.00022 29.2 3.4 28 75-102 237-264 (279)
14 PF04378 RsmJ: Ribosomal RNA s 61.2 11 0.00024 28.8 3.3 29 75-103 206-234 (245)
15 PRK02399 hypothetical protein; 59.0 1E+02 0.0022 25.4 9.3 88 5-98 304-403 (406)
16 PF04838 Baculo_LEF5: Baculovi 51.9 7.3 0.00016 27.4 0.9 73 59-136 17-107 (159)
17 TIGR00730 conserved hypothetic 47.3 83 0.0018 22.7 5.8 44 75-119 127-175 (178)
18 PF00561 Abhydrolase_1: alpha/ 42.8 1.2E+02 0.0025 21.3 7.2 19 65-83 60-78 (230)
19 PRK14484 phosphotransferase ma 41.8 1.1E+02 0.0024 20.8 7.1 47 35-95 58-104 (124)
20 TIGR01012 Sa_S2_E_A ribosomal 40.7 60 0.0013 23.9 4.3 68 68-136 28-102 (196)
21 PF05762 VWA_CoxE: VWA domain 39.4 65 0.0014 23.8 4.4 41 35-81 58-98 (222)
22 cd07042 STAS_SulP_like_sulfate 38.1 98 0.0021 19.1 5.4 49 37-91 42-90 (107)
23 PRK04020 rps2P 30S ribosomal p 37.0 77 0.0017 23.5 4.4 68 68-136 34-108 (204)
24 PTZ00254 40S ribosomal protein 36.3 72 0.0016 24.5 4.2 67 69-135 38-111 (249)
25 TIGR01011 rpsB_bact ribosomal 35.6 96 0.0021 23.3 4.8 65 69-135 29-102 (225)
26 TIGR02886 spore_II_AA anti-sig 32.6 1.3E+02 0.0028 18.9 5.5 51 37-93 40-90 (106)
27 PF01740 STAS: STAS domain; I 32.4 65 0.0014 20.7 3.1 49 37-91 49-97 (117)
28 COG1250 FadB 3-hydroxyacyl-CoA 31.7 35 0.00075 27.0 1.9 19 69-87 131-149 (307)
29 PRK05299 rpsB 30S ribosomal pr 31.5 86 0.0019 24.1 4.0 65 70-136 32-105 (258)
30 KOG1534|consensus 30.7 2.5E+02 0.0053 21.5 6.5 66 18-87 74-145 (273)
31 cd07043 STAS_anti-anti-sigma_f 30.5 1.3E+02 0.0028 18.2 5.1 51 37-93 39-89 (99)
32 cd01425 RPS2 Ribosomal protein 30.0 1.4E+02 0.003 21.7 4.8 65 69-135 23-96 (193)
33 cd00006 PTS_IIA_man PTS_IIA, P 28.6 1.1E+02 0.0024 20.1 3.8 63 11-90 39-101 (122)
34 PF04548 AIG1: AIG1 family; I 28.3 2.4E+02 0.0051 20.5 6.6 71 36-108 49-122 (212)
35 PF03668 ATP_bind_2: P-loop AT 26.9 3.1E+02 0.0067 21.5 6.3 81 49-129 27-109 (284)
36 PRK06394 rpl13p 50S ribosomal 26.2 1.6E+02 0.0035 20.6 4.3 64 35-109 28-105 (146)
37 PRK03592 haloalkane dehalogena 25.9 98 0.0021 23.3 3.6 47 36-82 54-126 (295)
38 cd00392 Ribosomal_L13 Ribosoma 25.4 1.9E+02 0.004 19.3 4.4 38 39-83 2-46 (114)
39 PF13466 STAS_2: STAS domain 25.2 1.6E+02 0.0034 17.4 5.3 51 37-93 27-77 (80)
40 COG0401 Uncharacterized homolo 24.4 72 0.0016 18.5 1.9 25 56-80 29-53 (56)
41 KOG0534|consensus 23.7 45 0.00098 26.1 1.3 38 58-98 201-238 (286)
42 cd06844 STAS Sulphate Transpor 23.2 2E+02 0.0043 17.9 5.7 50 37-92 40-89 (100)
43 TIGR00377 ant_ant_sig anti-ant 22.7 2E+02 0.0044 17.9 4.9 51 37-93 44-94 (108)
44 KOG1879|consensus 22.6 1.8E+02 0.0038 27.9 4.8 45 34-85 464-508 (1470)
45 TIGR01077 L13_A_E ribosomal pr 22.4 1.5E+02 0.0033 20.6 3.6 23 87-109 72-100 (142)
46 PF01827 FTH: FTH domain; Int 21.9 1.7E+02 0.0037 19.3 3.8 64 58-124 3-67 (142)
47 PRK11889 flhF flagellar biosyn 21.8 4.2E+02 0.0092 22.2 6.5 89 37-133 322-414 (436)
48 PF13340 DUF4096: Putative tra 21.4 71 0.0015 19.2 1.6 43 87-129 3-52 (75)
49 PF10237 N6-adenineMlase: Prob 21.4 3.1E+02 0.0067 19.5 5.4 78 49-134 3-89 (162)
50 PF15112 DUF4559: Domain of un 21.2 29 0.00062 27.4 -0.2 61 59-119 66-128 (307)
51 PF08152 GUCT: GUCT (NUC152) d 20.6 1E+02 0.0022 19.8 2.3 20 87-106 32-51 (97)
52 PF11885 DUF3405: Protein of u 20.5 4.6E+02 0.0099 22.4 6.5 45 3-49 109-153 (496)
53 COG1383 RPS17A Ribosomal prote 20.1 45 0.00097 20.5 0.5 47 54-105 4-50 (74)
No 1
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=6.6e-33 Score=195.96 Aligned_cols=129 Identities=36% Similarity=0.597 Sum_probs=108.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCC-C-CCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEE
Q psy14107 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEP-S-SQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVV 80 (151)
Q Consensus 3 ~~~d~~~~~~~~~~r~~~~~~E~~~~~~-~-~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~ii 80 (151)
+++|+.+++.++++|++++.+|.++++. . .+++|+++|+|++|++++++....++.++.++++++++||+|++++|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ii 106 (159)
T PF00650_consen 27 GRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYII 106 (159)
T ss_dssp TT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEE
Confidence 5789999999999999999999999653 2 5789999999999999998865558899999999999999999999999
Q ss_pred eCChHHHHHHHHHHHhhhHHhcCceEEccC-Ch-hHHhccCCCCCCCCCCCCC
Q psy14107 81 NQPTIFNMVFALFKPLLREKLRNRIFFHST-DR-DSLHKYLNPECLPEHYKGT 131 (151)
Q Consensus 81 n~P~~~~~~~~~~k~fl~~~~~~ki~~~~~-~~-~~L~~~i~~~~LP~~~GG~ 131 (151)
|+|++++++|+++++|++++|++||+++++ +. ++|.++||+++||.+|||+
T Consensus 107 n~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~GG~ 159 (159)
T PF00650_consen 107 NAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEYGGT 159 (159)
T ss_dssp S--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGGTSS
T ss_pred ecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhcCCC
Confidence 999999999999999999999999999953 44 5799999999999999996
No 2
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=2.3e-30 Score=182.76 Aligned_cols=129 Identities=34% Similarity=0.631 Sum_probs=119.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcC--CCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEE
Q psy14107 2 DQNWKHKKVCLDEVFKGAVLFLEAAMME--PSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHV 79 (151)
Q Consensus 2 ~~~~d~~~~~~~~~~r~~~~~~E~~~~~--~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~i 79 (151)
.++++++.++.++++|++++++|.++++ ...+++|+++|+|++|++++++ +++.++.++++++++||+|++++||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~---~~~~lk~~~~~~~~~yp~~l~~i~i 103 (158)
T smart00516 27 AGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNP---DLSVLRKILKILQDHYPERLGKVLI 103 (158)
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccc---cHHHHHHHHHHHHHHhHHHhCeEEE
Confidence 3578899999999999999999999976 5567899999999999999974 6899999999999999999999999
Q ss_pred EeCChHHHHHHHHHHHhhhHHhcCceEEccCC-hhHHhccCCCCCCCCCCCCCCC
Q psy14107 80 VNQPTIFNMVFALFKPLLREKLRNRIFFHSTD-RDSLHKYLNPECLPEHYKGTLD 133 (151)
Q Consensus 80 in~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~-~~~L~~~i~~~~LP~~~GG~~~ 133 (151)
+|+|++++++|+++++|+++++++||++++++ .++|.+++|+++||.+|||++.
T Consensus 104 vn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 104 INPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred ECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhhCCCCC
Confidence 99999999999999999999999999999653 5789999999999999999974
No 3
>KOG1471|consensus
Probab=99.96 E-value=8.8e-31 Score=204.49 Aligned_cols=132 Identities=40% Similarity=0.633 Sum_probs=119.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCC
Q psy14107 4 NWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 4 ~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P 83 (151)
.+++.++...++.+.+.+.+|...++...+++|++.|+|++|++++|+++..++.++.++.++|++||+|++++||||+|
T Consensus 128 ~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P 207 (317)
T KOG1471|consen 128 SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAP 207 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCc
Confidence 34555667778888888888888776667899999999999999999988899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhHHhcCceE-EccCChhHHhccCCCCCCCCCCCCCCCCc
Q psy14107 84 TIFNMVFALFKPLLREKLRNRIF-FHSTDRDSLHKYLNPECLPEHYKGTLDVS 135 (151)
Q Consensus 84 ~~~~~~~~~~k~fl~~~~~~ki~-~~~~~~~~L~~~i~~~~LP~~~GG~~~~~ 135 (151)
++|.++|+++||||+++|++||+ +++++.++|.++|++++||.+|||++.+.
T Consensus 208 ~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~~ 260 (317)
T KOG1471|consen 208 TIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGTCGDL 260 (317)
T ss_pred hhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCCcccc
Confidence 99999999999999999999999 45555678999999999999999999985
No 4
>KOG1470|consensus
Probab=99.96 E-value=5.1e-29 Score=191.80 Aligned_cols=128 Identities=26% Similarity=0.409 Sum_probs=118.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEe
Q psy14107 2 DQNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVN 81 (151)
Q Consensus 2 ~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin 81 (151)
++.+.++..+.+++.|+.+|+||.++.....+++++++++|++|+|++|+ +.+..+.+++++|+||||||+..+++|
T Consensus 117 ~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~---d~~~~k~~~~~lq~hYPErLg~a~l~~ 193 (324)
T KOG1470|consen 117 PRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNP---DIKFLKELLHILQDHYPERLGKALLVN 193 (324)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCC---CcHHHHHHHHHHHHhChHHhhhhhhcC
Confidence 35677889999999999999999999877767899999999999999965 688999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhHHhcCceEEccCChhHHhccCCCCCCCCCCCCCCC
Q psy14107 82 QPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECLPEHYKGTLD 133 (151)
Q Consensus 82 ~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 133 (151)
+||+|..+|+++|||++++|++||.|.. +.+++.++||+++||..|||+..
T Consensus 194 ~P~iF~~~wkiikpflDp~t~~Kv~F~~-~~~~l~~~~d~~~l~s~~GG~~~ 244 (324)
T KOG1470|consen 194 APWIFQPFWKIIKPFLDPKTASKVKFVE-PKDDLSEYFDESQLPSLFGGKLL 244 (324)
T ss_pred ChHHHHHHHHHhhhccChhhhceeEEec-ChhHHHhhCCccccchhhCCCcc
Confidence 9999999999999999999999999994 56779999999999999999654
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=2.2e-28 Score=171.01 Aligned_cols=122 Identities=38% Similarity=0.646 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHH
Q psy14107 9 KVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNM 88 (151)
Q Consensus 9 ~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~ 88 (151)
..+.++++++.++.+|..++++..+.+|+++|+|++|++++++. .+++.+++++++++++||+|++++|++|+|++++.
T Consensus 36 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~ 114 (157)
T cd00170 36 SLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKV 114 (157)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-hhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHH
Confidence 34559999999999999998877666899999999999999886 57889999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhcCceEEccCChhHHhccCCCCCCCCCCCCC
Q psy14107 89 VFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECLPEHYKGT 131 (151)
Q Consensus 89 ~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~LP~~~GG~ 131 (151)
+|+++++|+++++++||++++++.++|.+++|+++||.+|||+
T Consensus 115 ~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 115 LWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcHhhCCC
Confidence 9999999999999999999964478999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.47 E-value=2.8e-14 Score=100.11 Aligned_cols=118 Identities=19% Similarity=0.344 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHH-H
Q psy14107 13 DEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVF-A 91 (151)
Q Consensus 13 ~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~-~ 91 (151)
+|+.+.+.|++.....+ ....++++|+|+++.+..+. .+.+.++++.+.+...|+.+++++|++|++++++.++ .
T Consensus 28 ~~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~~--~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~ 103 (149)
T PF13716_consen 28 DDLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSSE--PSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILAT 103 (149)
T ss_dssp THHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG-----HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccccC--CchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHH
Confidence 36777777777766433 22466999999999988653 2567899999999999999999999999999999999 5
Q ss_pred HHHHhhhHHh-cCceEEccCChhHHhccCCCCCCCCCCCCCCCCc
Q psy14107 92 LFKPLLREKL-RNRIFFHSTDRDSLHKYLNPECLPEHYKGTLDVS 135 (151)
Q Consensus 92 ~~k~fl~~~~-~~ki~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~ 135 (151)
+.+++.+++. ..||.++ ++.++|.++||+++||.++||..+..
T Consensus 104 ~~~~~~~~~~~~~kv~~~-~sl~~L~~~i~~~qL~~~lp~~~~~d 147 (149)
T PF13716_consen 104 LLRPFVSSKFWKKKVVYV-SSLSELSKHIDPSQLPESLPGVLQYD 147 (149)
T ss_dssp TTTTGGGGTT--TTEEEE-SSTCGGGGTSGGGG------HHH---
T ss_pred HhcccccccccceEEEEE-CCHHHHHhhCCHHHhcccCCCEEecC
Confidence 5577889998 8999998 47899999999999999999987654
No 7
>KOG4406|consensus
Probab=98.26 E-value=3.3e-06 Score=67.51 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHH
Q psy14107 15 VFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFK 94 (151)
Q Consensus 15 ~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k 94 (151)
++++.++.+|..+++. ++++.=-.|+...+.. ...++.....-+..+|--.++.+|+|++-|+.+++|+.+|
T Consensus 115 li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~nkp--~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k 186 (467)
T KOG4406|consen 115 LISYLVYTIDKYVEND------YTLVYFHHGLPSDNKP--YLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK 186 (467)
T ss_pred HHHHHHHHHHHHHhcc------ceeeehhcCCcccccc--hHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh
Confidence 8899999999988664 5556656677666543 4567777777778889999999999999999999999999
Q ss_pred HhhhHHhcCceEEccCChhHHhccCCC
Q psy14107 95 PLLREKLRNRIFFHSTDRDSLHKYLNP 121 (151)
Q Consensus 95 ~fl~~~~~~ki~~~~~~~~~L~~~i~~ 121 (151)
||++.|..+||+.+ +..++|.+++.-
T Consensus 187 plIS~KF~rKi~Y~-n~lseL~~~l~l 212 (467)
T KOG4406|consen 187 PLISLKFTRKIIYF-NSLSELFEALKL 212 (467)
T ss_pred hhcchhhhceeEEe-ehHHHHHHhhhh
Confidence 99999999999998 467888887653
No 8
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=77.21 E-value=12 Score=22.73 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=34.5
Q ss_pred EEEeCCCCCccccccCCHHHHHHHHHHhhcccc--eeeceEEEEeCChHHHHHHH
Q psy14107 39 VIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIP--LRVKGIHVVNQPTIFNMVFA 91 (151)
Q Consensus 39 ~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP--~rl~~i~iin~P~~~~~~~~ 91 (151)
+++|+.|+.. ++.+++-.++.-+...|+ +.-.++.++|++.....+.+
T Consensus 20 V~lDF~gv~~-----~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 20 VVLDFEGVES-----ITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred EEEECCCccc-----ccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 7899999953 256788888777777777 44557778888776664443
No 9
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.63 E-value=7.2 Score=29.82 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=45.6
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHh--cCceEEccCCh------hHHhccCCCCCCCCCC-CCCCCC
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKL--RNRIFFHSTDR------DSLHKYLNPECLPEHY-KGTLDV 134 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~--~~ki~~~~~~~------~~L~~~i~~~~LP~~~-GG~~~~ 134 (151)
-.|.+| ..+||||.-.....+- .+-.|+..-. -.+|-|+|+.. .+..+....-.+...| ||++.+
T Consensus 30 fIf~~R-ngihIIDL~kT~~~l~-~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN 103 (252)
T COG0052 30 FIFGER-NGIHIIDLQKTLERLR-EAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTN 103 (252)
T ss_pred cceeec-CCcEEEEHHHHHHHHH-HHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCCceecCcccCccccC
Confidence 458999 9999999887665432 2334555544 57799997642 2456677777777776 999987
No 10
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=71.69 E-value=25 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=35.0
Q ss_pred cccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHH
Q psy14107 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKP 95 (151)
Q Consensus 34 ~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~ 95 (151)
-+|++++.|+ |-+..+. ...+.++. +++.+.+..+|.|-+...+...+..
T Consensus 59 ~dgVlvl~DL-Ggs~~n~--------e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~ 108 (125)
T TIGR02364 59 ADGVLIFYDL-GSAVMNA--------EMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEA 108 (125)
T ss_pred CCCEEEEEcC-CCcHhHH--------HHHHHHhc---cccccEEEEechhHHHHHHHHHHHH
Confidence 4789999999 7665421 11333333 3556789999999999988877654
No 11
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=71.33 E-value=16 Score=23.39 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCC-CCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHH
Q psy14107 9 KVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMD-GLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFN 87 (151)
Q Consensus 9 ~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~-g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~ 87 (151)
..+.+|+.+ +.-.++..+.. ...+.+++|++ ++.- +++.......++... ....+.++=+|-.+.+..
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~----~~~~~ll~d~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~ 78 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIAD----HGKIRLLVDLRRDFEG-----WSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIR 78 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTT----SSSEEEEEEEC-CEEE-----EHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCH
T ss_pred eeCHHHHHH-HHHHHHHHHhc----CCceEEEEEecCccCC-----CCHHHHHHHHHhchh-hhcccCEEEEEECcHHHH
Confidence 456777777 44455555542 35588899988 7621 234455555555555 777888888888888888
Q ss_pred HHHHHHHHh
Q psy14107 88 MVFALFKPL 96 (151)
Q Consensus 88 ~~~~~~k~f 96 (151)
.+.+++..+
T Consensus 79 ~~~~~~~~~ 87 (109)
T PF11964_consen 79 MIANFFAAF 87 (109)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888886
No 12
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=63.86 E-value=9.6 Score=25.97 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccccee-ec-eEEEEeCChHHHHHHHHH-----HHhhhHHhcCceEEccCChhHHhccC
Q psy14107 57 TFAKRIVDWLQDSIPLR-VK-GIHVVNQPTIFNMVFALF-----KPLLREKLRNRIFFHSTDRDSLHKYL 119 (151)
Q Consensus 57 ~~~k~~~~~l~~~yP~r-l~-~i~iin~P~~~~~~~~~~-----k~fl~~~~~~ki~~~~~~~~~L~~~i 119 (151)
..+.+++..++-.+=.+ -+ -++++|..-+++-+++.+ ..|+++...+.+.++ ++.+++.++|
T Consensus 65 GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~-d~~~e~~~~i 133 (133)
T PF03641_consen 65 GTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFV-DDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEE-SSHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEe-CCHHHHHhhC
Confidence 34555555554222222 23 699999987888788776 357888888888888 4677766543
No 13
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=63.26 E-value=10 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.5
Q ss_pred ceEEEEeCChHHHHHHHHHHHhhhHHhc
Q psy14107 75 KGIHVVNQPTIFNMVFALFKPLLREKLR 102 (151)
Q Consensus 75 ~~i~iin~P~~~~~~~~~~k~fl~~~~~ 102 (151)
..+++||+||.+..-...+-|++...+.
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLLA 264 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHhc
Confidence 3789999999999999888888876543
No 14
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=61.23 E-value=11 Score=28.80 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=22.0
Q ss_pred ceEEEEeCChHHHHHHHHHHHhhhHHhcC
Q psy14107 75 KGIHVVNQPTIFNMVFALFKPLLREKLRN 103 (151)
Q Consensus 75 ~~i~iin~P~~~~~~~~~~k~fl~~~~~~ 103 (151)
..++|||+||-+....+-+-++|.+.+..
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 47899999999998888888888776554
No 15
>PRK02399 hypothetical protein; Provisional
Probab=58.95 E-value=1e+02 Score=25.44 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=66.1
Q ss_pred CCCCC----CCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccc---cCCHHHHHHHHHHhhcccceeeceE
Q psy14107 5 WKHKK----VCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAW---QFTPTFAKRIVDWLQDSIPLRVKGI 77 (151)
Q Consensus 5 ~d~~~----~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~---~~~~~~~k~~~~~l~~~yP~rl~~i 77 (151)
|||.. .+.+|..+.--++-|.+-+. ...+.+++=+.|+|.-... -.++..-..++..+++..+..+.
T Consensus 304 HNp~vTlmRTt~eE~~~~g~~ia~kLn~a----~gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~~~l~~~~~-- 377 (406)
T PRK02399 304 HNPQVTLMRTTPEENRQIGRWIAEKLNRA----KGPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALEETVTETRR-- 377 (406)
T ss_pred cCCcceeeecCHHHHHHHHHHHHHHHhcC----CCCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHHHhCCCCce--
Confidence 55553 48899888888888887433 2448899999999987632 14788888899999999877654
Q ss_pred EE-----EeCChHHHHHHHHHHHhhh
Q psy14107 78 HV-----VNQPTIFNMVFALFKPLLR 98 (151)
Q Consensus 78 ~i-----in~P~~~~~~~~~~k~fl~ 98 (151)
++ ||.|.|...+...+..++.
T Consensus 378 v~~~~~hIND~~FA~a~~~~l~~~~~ 403 (406)
T PRK02399 378 LIEVPAHINDPEFAEAAVEAFEELMA 403 (406)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 45 7999999988877766654
No 16
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=51.93 E-value=7.3 Score=27.40 Aligned_cols=73 Identities=23% Similarity=0.396 Sum_probs=52.2
Q ss_pred HHHHHHHhhcccceeec--eEEEEeCChHHHHHHHHHHHhhhH--HhcCceEE--------c---cCC---hhHHhccCC
Q psy14107 59 AKRIVDWLQDSIPLRVK--GIHVVNQPTIFNMVFALFKPLLRE--KLRNRIFF--------H---STD---RDSLHKYLN 120 (151)
Q Consensus 59 ~k~~~~~l~~~yP~rl~--~i~iin~P~~~~~~~~~~k~fl~~--~~~~ki~~--------~---~~~---~~~L~~~i~ 120 (151)
.+.++..+...||..++ .+-++|..-.|.++|+-+ |-++. +-|+.|+. + .+| +++|.+.++
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRLs~dcI~kL~~nT~NdfKLY~Elf~~i~ 95 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRLSEDCIEKLFVNTINDFKLYEELFDMID 95 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 57789999999999999 899999999999999877 55555 44555554 1 123 247888888
Q ss_pred CCCCCCCCCCCCCCcc
Q psy14107 121 PECLPEHYKGTLDVSL 136 (151)
Q Consensus 121 ~~~LP~~~GG~~~~~~ 136 (151)
.+.+. .+|||.-
T Consensus 96 ~~~~~----~~CPCel 107 (159)
T PF04838_consen 96 DNKLK----EKCPCEL 107 (159)
T ss_pred ccCCC----CCCCHHH
Confidence 55443 3456543
No 17
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=47.29 E-value=83 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=33.3
Q ss_pred ceEEEEeCChHHHHHHHHHHH-----hhhHHhcCceEEccCChhHHhccC
Q psy14107 75 KGIHVVNQPTIFNMVFALFKP-----LLREKLRNRIFFHSTDRDSLHKYL 119 (151)
Q Consensus 75 ~~i~iin~P~~~~~~~~~~k~-----fl~~~~~~ki~~~~~~~~~L~~~i 119 (151)
+.+.++|..-+++.+.++++. |++++-++.+.+. ++.+++.+++
T Consensus 127 kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~-d~~~e~~~~i 175 (178)
T TIGR00730 127 KPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVV-SRPDELIEQV 175 (178)
T ss_pred CCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEc-CCHHHHHHHH
Confidence 578999988888888876543 6777777888888 4678777665
No 18
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=42.81 E-value=1.2e+02 Score=21.29 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.1
Q ss_pred HhhcccceeeceEEEEeCC
Q psy14107 65 WLQDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 65 ~l~~~yP~rl~~i~iin~P 83 (151)
.+...||++++++++++++
T Consensus 60 ~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 60 EYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp HHHHHSGGGEEEEEEESES
T ss_pred HHHHHCchhhcCcEEEeee
Confidence 3456799999999999998
No 19
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=41.76 E-value=1.1e+02 Score=20.76 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHH
Q psy14107 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKP 95 (151)
Q Consensus 35 ~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~ 95 (151)
+|++++.|+ |-+..+ ....+..+.+ - .+++++++|-+=..+-..+..
T Consensus 58 dGVlVltDL-Gssp~n--------~~~a~e~~~~----~-~~v~~~daPlVEGa~~Aav~~ 104 (124)
T PRK14484 58 DGVLIFFDL-GSAEMN--------AEMAIEMLDG----E-KKIIIIDAPIVEGAFTAAVLL 104 (124)
T ss_pred CCeEEEEeC-CChHHH--------HHHHHHhcCC----C-CcEEEECCcHHHHHHHHHHHH
Confidence 899999999 765443 2223344432 2 889999999887777666544
No 20
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=40.68 E-value=60 Score=23.94 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=39.3
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCcc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVSL 136 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~~ 136 (151)
..|..|-..+||||.-.....+-... .|+..-..++|-|+++... +..+......+-. ..||++.+..
T Consensus 28 yI~~~r~~gi~IIdL~kT~~~L~~A~-~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~ 102 (196)
T TIGR01012 28 FIYKVRSDGLYVLDLRKTDERLRVAA-KFLVRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPM 102 (196)
T ss_pred ceeeecCCCCEEEcHHHHHHHHHHHH-HHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCcc
Confidence 34666767788888776555443333 3333333777888875432 2444455444444 4489886644
No 21
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=39.38 E-value=65 Score=23.84 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=27.6
Q ss_pred ccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEe
Q psy14107 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVN 81 (151)
Q Consensus 35 ~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin 81 (151)
..+++++|.+| ||..+. .++..++..+...++ ++.-+.+.+
T Consensus 58 ~~lvvl~DvSG-SM~~~s----~~~l~~~~~l~~~~~-~~~~f~F~~ 98 (222)
T PF05762_consen 58 RRLVVLCDVSG-SMAGYS----EFMLAFLYALQRQFR-RVRVFVFST 98 (222)
T ss_pred ccEEEEEeCCC-ChHHHH----HHHHHHHHHHHHhCC-CEEEEEEee
Confidence 47999999999 666542 345566677777777 555555544
No 22
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=38.11 E-value=98 Score=19.13 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=30.1
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFA 91 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~ 91 (151)
-.+|+|+++++.- +.+.+..+..+.+.. -.+=..+++.|.+.-+..++.
T Consensus 42 ~~lilD~~~v~~i-----Dss~~~~L~~~~~~~-~~~~~~~~l~~~~~~~~~~l~ 90 (107)
T cd07042 42 KVVILDLSAVNFI-----DSTAAEALEELVKDL-RKRGVELYLAGLNPQVRELLE 90 (107)
T ss_pred eEEEEECCCCchh-----hHHHHHHHHHHHHHH-HHCCCEEEEecCCHHHHHHHH
Confidence 4678999998753 444455444444332 233467888888876555544
No 23
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=36.97 E-value=77 Score=23.53 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=40.2
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCCCC-CCCCCCcc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPEHY-KGTLDVSL 136 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~~~-GG~~~~~~ 136 (151)
..|..|-..+||||.-.....+-... .|+......+|-|+++... +..+......+...| ||++.+..
T Consensus 34 yIyg~r~~gi~IIdL~kT~~~L~~A~-~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~ 108 (204)
T PRK04020 34 FIYRVRPDGLYVLDVRKTDERIRIAA-KFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPS 108 (204)
T ss_pred cEeeecCCCCEEEcHHHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcc
Confidence 44667777888888766555443333 3444445677888876532 244445555555544 99886543
No 24
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=36.27 E-value=72 Score=24.47 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=35.7
Q ss_pred ccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCCh------hHHhccCCCCCCCCCC-CCCCCCc
Q psy14107 69 SIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDR------DSLHKYLNPECLPEHY-KGTLDVS 135 (151)
Q Consensus 69 ~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~------~~L~~~i~~~~LP~~~-GG~~~~~ 135 (151)
.|..|-..+||||.-.....+-...+.+-.-.-..+|.++++.. .+..++.....+-..| ||++.+.
T Consensus 38 Iy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~ 111 (249)
T PTZ00254 38 VYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQ 111 (249)
T ss_pred EecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCc
Confidence 35555567778877765554444333322223356677776443 1344445555554444 7877553
No 25
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=35.56 E-value=96 Score=23.25 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=39.3
Q ss_pred ccceeeceEEEEeCChHHHHHHHHHHHhhhH--HhcCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCc
Q psy14107 69 SIPLRVKGIHVVNQPTIFNMVFALFKPLLRE--KLRNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVS 135 (151)
Q Consensus 69 ~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~--~~~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~ 135 (151)
.|.+| ..+||+|.......+-... .|+.. +-..+|-|++++.. +..+......+-. .+||++.+.
T Consensus 29 Iyg~r-~g~~IIdL~~T~~~L~~A~-~~i~~~~~~~g~iLfV~tk~~~~~~v~~~a~~~~~~yv~~rWlgG~LTN~ 102 (225)
T TIGR01011 29 IFGER-NGIHIIDLQKTLQLLKEAY-NFVKDVAANGGKILFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNF 102 (225)
T ss_pred eeeee-CCeEEEcHHHHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhCCcccCCeecCeeccCH
Confidence 36667 7799999887666444433 34432 34577888876532 3444455444444 459998764
No 26
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.61 E-value=1.3e+02 Score=18.91 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+|+|+++++.=. .+.+..+....+.. -.+=.+++++|.+.-+.-++...
T Consensus 40 ~~vilDls~v~~iD-----ssgi~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~ 90 (106)
T TIGR02886 40 KHLILNLKNVTFMD-----SSGLGVILGRYKKI-KNEGGEVIVCNVSPAVKRLFELS 90 (106)
T ss_pred CEEEEECCCCcEec-----chHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHh
Confidence 46899999998643 33344333333322 13446899999988877666543
No 27
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=32.44 E-value=65 Score=20.71 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFA 91 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~ 91 (151)
-.+|+||++++.- +.+.+..+..+.+..- .+=..++++|.+.-....+.
T Consensus 49 ~~vIlD~s~v~~i-----Dssgi~~L~~~~~~~~-~~g~~~~l~~~~~~v~~~l~ 97 (117)
T PF01740_consen 49 KNVILDMSGVSFI-----DSSGIQALVDIIKELR-RRGVQLVLVGLNPDVRRILE 97 (117)
T ss_dssp SEEEEEETTESEE-----SHHHHHHHHHHHHHHH-HTTCEEEEESHHHHHHHHHH
T ss_pred eEEEEEEEeCCcC-----CHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH
Confidence 5779999999654 4445555555544433 45567899998877765543
No 28
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=31.66 E-value=35 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.0
Q ss_pred ccceeeceEEEEeCChHHH
Q psy14107 69 SIPLRVKGIHVVNQPTIFN 87 (151)
Q Consensus 69 ~yP~rl~~i~iin~P~~~~ 87 (151)
..|+|+-.+|+.|+|.++.
T Consensus 131 ~rper~iG~HFfNP~~~m~ 149 (307)
T COG1250 131 KRPERFIGLHFFNPVPLMP 149 (307)
T ss_pred CCchhEEEEeccCCCCcce
Confidence 7899999999999997764
No 29
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=31.47 E-value=86 Score=24.09 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=38.1
Q ss_pred cceeeceEEEEeCChHHHHHHHHHHHhhhH--HhcCceEEccCChh------HHhccCCCCCCC-CCCCCCCCCcc
Q psy14107 70 IPLRVKGIHVVNQPTIFNMVFALFKPLLRE--KLRNRIFFHSTDRD------SLHKYLNPECLP-EHYKGTLDVSL 136 (151)
Q Consensus 70 yP~rl~~i~iin~P~~~~~~~~~~k~fl~~--~~~~ki~~~~~~~~------~L~~~i~~~~LP-~~~GG~~~~~~ 136 (151)
|-.| ..+||||.-.....+-... .|+.. +-..+|-|+++... +..+......+- +.+||++.+..
T Consensus 32 yg~r-~gi~IIdL~kT~~~L~~A~-~~i~~~~~~~g~iLfVgTk~~~~~~V~~~A~~~~~~yv~~rWlgG~LTN~~ 105 (258)
T PRK05299 32 FGER-NGIHIIDLQKTVPMLDEAY-NFVRDVAANGGKILFVGTKKQAQEAIAEEAERCGMPYVNHRWLGGMLTNFK 105 (258)
T ss_pred eccc-CCeEEEcHHHHHHHHHHHH-HHHHHHHhCCCEEEEEECcHHHHHHHHHHHHHhCCeeeCCeecCeeccCHH
Confidence 5666 7889998877665444433 33333 34677888876532 234444444443 34599987643
No 30
>KOG1534|consensus
Probab=30.74 E-value=2.5e+02 Score=21.51 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcC------CCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHH
Q psy14107 18 GAVLFLEAAMME------PSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFN 87 (151)
Q Consensus 18 ~~~~~~E~~~~~------~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~ 87 (151)
.++|++|+.+.. +....++--+|+||-|= +.-++. ...+++++.-++. .-.++..+|++.++.+.+
T Consensus 74 gLv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQ-IELytH--~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD 145 (273)
T KOG1534|consen 74 GLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQ-IELYTH--LPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVD 145 (273)
T ss_pred cchhHHHHHHHHHHHHHhhccCccCCEEEEeCCCe-eEEeec--ChhHHHHHHHHhc-ccCceeEEEEeccchhhh
Confidence 357888887642 11235777889999884 111222 2357888888877 456778888888776554
No 31
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=30.46 E-value=1.3e+02 Score=18.23 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+++|+++++.-. .+.+..+..+.+..- .+=..+.+.+.+.-...++..+
T Consensus 39 ~~viid~~~v~~iD-----s~g~~~L~~l~~~~~-~~g~~v~i~~~~~~~~~~l~~~ 89 (99)
T cd07043 39 RRLVLDLSGVTFID-----SSGLGVLLGAYKRAR-AAGGRLVLVNVSPAVRRVLELT 89 (99)
T ss_pred CEEEEECCCCCEEc-----chhHHHHHHHHHHHH-HcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999887543 333444444433332 3345688888887666665544
No 32
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.00 E-value=1.4e+02 Score=21.69 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred ccceeeceEEEEeCChHHHHHHHHHHHhhhHHh--cCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCc
Q psy14107 69 SIPLRVKGIHVVNQPTIFNMVFALFKPLLREKL--RNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVS 135 (151)
Q Consensus 69 ~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~--~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~ 135 (151)
.|-.| ..+||+|.......+-...+ |+..-. ..+|-|++++.. ...+......+.. ..||.+...
T Consensus 23 iyg~r-~~~~Iidl~~T~~~L~~A~~-~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~ 96 (193)
T cd01425 23 IYGER-NGIHIIDLEKTLEKLRLALN-FIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNW 96 (193)
T ss_pred eeccc-CCeEEEeHHHHHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCH
Confidence 35555 66777776655554333332 222222 355666654421 2333333333433 447776653
No 33
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=28.56 E-value=1.1e+02 Score=20.12 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHH
Q psy14107 11 CLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVF 90 (151)
Q Consensus 11 ~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~ 90 (151)
+.+++.+.+.-.++. .. ..++++++.|+-|-|..+. ...+.... .++.-+.-+|.|.+...+.
T Consensus 39 ~~~~~~~~i~~~i~~----~~-~~~~viil~Dl~GGSp~n~----------~~~~~~~~--~~~~visG~nlpmlle~~~ 101 (122)
T cd00006 39 SPDDLLEKIKAALAE----LD-SGEGVLILTDLFGGSPNNA----------AARLSMEH--PPVEVIAGVNLPMLLEAAR 101 (122)
T ss_pred CHHHHHHHHHHHHHH----hC-CCCcEEEEEeCCCCCHHHH----------HHHHHhcC--CCEEEEEccCHHHHHHHHH
Confidence 455555444333332 21 2478999999988876532 12222222 4567777889998887654
No 34
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=28.30 E-value=2.4e+02 Score=20.52 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=46.4
Q ss_pred cEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHH---HHHHHHHHHhhhHHhcCceEEc
Q psy14107 36 GAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIF---NMVFALFKPLLREKLRNRIFFH 108 (151)
Q Consensus 36 g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~---~~~~~~~k~fl~~~~~~ki~~~ 108 (151)
.-+.|+|--|+.=.... +-...+.+.+.+....|..-.-+++++..++- ..++..+...+.++..+.+.++
T Consensus 49 ~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 35679999998433321 34456778887777888766677788877553 4677777778888877776654
No 35
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=26.87 E-value=3.1e+02 Score=21.53 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred cccccCCHHHHHHHHHHhhcccc--eeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChhHHhccCCCCCCCC
Q psy14107 49 QQAWQFTPTFAKRIVDWLQDSIP--LRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECLPE 126 (151)
Q Consensus 49 ~~~~~~~~~~~k~~~~~l~~~yP--~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~LP~ 126 (151)
-.+++++++++..++..+++.=+ .++.-.+=+....++.-+...+..+......-+|.|+.-+.+.|.+.....-=|-
T Consensus 27 ~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~H 106 (284)
T PF03668_consen 27 YCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRH 106 (284)
T ss_pred eEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCC
Confidence 33567788888888888874433 3333333345556677777777777777777778888655566777666444333
Q ss_pred CCC
Q psy14107 127 HYK 129 (151)
Q Consensus 127 ~~G 129 (151)
-++
T Consensus 107 PL~ 109 (284)
T PF03668_consen 107 PLS 109 (284)
T ss_pred CCC
Confidence 333
No 36
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=26.19 E-value=1.6e+02 Score=20.62 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=35.9
Q ss_pred ccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeC----Ch----HHHHHHHHHHHhhh------HH
Q psy14107 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQ----PT----IFNMVFALFKPLLR------EK 100 (151)
Q Consensus 35 ~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~----P~----~~~~~~~~~k~fl~------~~ 100 (151)
...|+|++++.+.++--. ... ...-.+|+ +++.. .|+ |. --..++..++.+|| ..
T Consensus 28 Gd~VVViNa~kv~~tG~K------~~~--~~~y~~~~-~~k~~--~np~~~~~~~~r~P~~il~~AV~gMLP~kn~~gr~ 96 (146)
T PRK06394 28 GEEVVIVNAEKAVITGNR------ERV--IEKYKQRR-ERGSH--YNPYRNGPKYPRRPDRIFKRTIRGMLPYKKPRGRE 96 (146)
T ss_pred CCEEEEEechheEecCch------hhh--eeeEeCCC-CCccc--CCCCChHHhhhcCHHHHHHHHHHhcCCCCChhHHH
Confidence 678899999888766421 111 11223344 33332 342 00 13467788888888 34
Q ss_pred hcCceEEcc
Q psy14107 101 LRNRIFFHS 109 (151)
Q Consensus 101 ~~~ki~~~~ 109 (151)
..+|++++.
T Consensus 97 ~~~rLkvy~ 105 (146)
T PRK06394 97 ALKRLKVYV 105 (146)
T ss_pred HHhCcEEec
Confidence 556777774
No 37
>PRK03592 haloalkane dehalogenase; Provisional
Probab=25.93 E-value=98 Score=23.29 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCcccccc--CCHHH----HHHH--------------------HHHhhcccceeeceEEEEeC
Q psy14107 36 GAQVIFDMDGLSLQQAWQ--FTPTF----AKRI--------------------VDWLQDSIPLRVKGIHVVNQ 82 (151)
Q Consensus 36 g~v~IiD~~g~s~~~~~~--~~~~~----~k~~--------------------~~~l~~~yP~rl~~i~iin~ 82 (151)
+-++.+|+.|.+.+.... .+... +..+ ...+...||+++++++++|+
T Consensus 54 ~~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 54 GRCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 378899999999886421 12221 1211 22235678999999999996
No 38
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=25.38 E-value=1.9e+02 Score=19.32 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEeCCCCCccccccCCHHHHHHHHHHhhc-----cccee--eceEEEEeCC
Q psy14107 39 VIFDMDGLSLQQAWQFTPTFAKRIVDWLQD-----SIPLR--VKGIHVVNQP 83 (151)
Q Consensus 39 ~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~-----~yP~r--l~~i~iin~P 83 (151)
+|||++|-.+.. +...++.+|+. +.|.. =..|+|||+-
T Consensus 2 ~viDA~~~~lGR-------lAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~ 46 (114)
T cd00392 2 HVIDAKGQVLGR-------LASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAE 46 (114)
T ss_pred EEEeCCCCchHH-------HHHHHHHHHcCCCCCCcCCCccCCCEEEEEecc
Confidence 477777765542 34445555554 22222 2357777754
No 39
>PF13466 STAS_2: STAS domain
Probab=25.20 E-value=1.6e+02 Score=17.43 Aligned_cols=51 Identities=10% Similarity=0.224 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+++|+++++.- +.+.+.-++.+ ......+=..+.+.|+|.-+..++.++
T Consensus 27 ~~v~lDls~v~~i-----Dsagl~lL~~~-~~~~~~~g~~~~l~~~~~~~~~ll~~~ 77 (80)
T PF13466_consen 27 RPVVLDLSGVEFI-----DSAGLQLLLAA-ARRARARGRQLRLTGPSPALRRLLELL 77 (80)
T ss_pred CeEEEECCCCCee-----cHHHHHHHHHH-HHHHHHCCCeEEEEcCCHHHHHHHHHh
Confidence 5679999999864 44444444444 334444557888999998887776543
No 40
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=24.36 E-value=72 Score=18.52 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcccceeeceEEEE
Q psy14107 56 PTFAKRIVDWLQDSIPLRVKGIHVV 80 (151)
Q Consensus 56 ~~~~k~~~~~l~~~yP~rl~~i~ii 80 (151)
.+++-.++-++-.++|..++++|++
T Consensus 29 ~df~iNiLLtlLg~~PGiiHA~yvi 53 (56)
T COG0401 29 KDFLINILLTLLGYIPGIIHALYVI 53 (56)
T ss_pred HHHHHHHHHHHHHhhhhhHhheEEE
Confidence 4567777777778999999999987
No 41
>KOG0534|consensus
Probab=23.70 E-value=45 Score=26.10 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhh
Q psy14107 58 FAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLR 98 (151)
Q Consensus 58 ~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~ 98 (151)
++|+-+.-++..||+|++.-++++.|. -.|+.-..+++
T Consensus 201 Llr~eL~~la~~~p~rf~~~y~v~~~~---~~w~~~~g~It 238 (286)
T KOG0534|consen 201 LLREELEELASKYPERFKVWYVVDQPP---EIWDGSVGFIT 238 (286)
T ss_pred chHHHHHHHHhhCcceEEEEEEEcCCc---ccccCccCccC
Confidence 578889999999999999999999998 45543333333
No 42
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.15 E-value=2e+02 Score=17.93 Aligned_cols=50 Identities=4% Similarity=0.051 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~ 92 (151)
-.+|+|+++++.- +.+.+..+..+.++ +-.+=..++++|++.-..-++..
T Consensus 40 ~~vilDls~v~~i-----Dssgl~~L~~l~~~-~~~~g~~l~l~~~~~~v~~~l~~ 89 (100)
T cd06844 40 KTIVIDISALEFM-----DSSGTGVLLERSRL-AEAVGGQFVLTGISPAVRITLTE 89 (100)
T ss_pred CEEEEECCCCcEE-----cHHHHHHHHHHHHH-HHHcCCEEEEECCCHHHHHHHHH
Confidence 4789999988754 34444444444322 22345678899988777666543
No 43
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.67 E-value=2e+02 Score=17.88 Aligned_cols=51 Identities=6% Similarity=0.049 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+++|+++++.-.. .....+..+.+.++ ++=..+.+++.+.-+..++...
T Consensus 44 ~~vvidls~v~~iDs--sgl~~L~~~~~~~~----~~~~~~~l~~~~~~~~~~l~~~ 94 (108)
T TIGR00377 44 RPIVLDLEDLEFMDS--SGLGVLLGRYKQVR----RVGGQLVLVSVSPRVARLLDIT 94 (108)
T ss_pred CeEEEECCCCeEEcc--ccHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHHHHh
Confidence 457899998875432 13344444444443 2345788888887777666543
No 44
>KOG1879|consensus
Probab=22.64 E-value=1.8e+02 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=35.9
Q ss_pred cccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChH
Q psy14107 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTI 85 (151)
Q Consensus 34 ~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~ 85 (151)
.-.+|++||..... +..+++.+..+....+|.|++-|++.|..--
T Consensus 464 l~nlV~vIDpa~~~-------~~~~l~~~~~f~s~~~P~R~G~v~~~nd~~~ 508 (1470)
T KOG1879|consen 464 LFNLVFVIDPATPE-------DLEFLKTARNFVSHQIPVRIGFVFIANDDDE 508 (1470)
T ss_pred heeEEEEecCCCcc-------chHHHHHHHHHhcCCCceEEEEEEEecCCcc
Confidence 45699999987664 3456777777777789999999999998755
No 45
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=22.41 E-value=1.5e+02 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHH------hcCceEEcc
Q psy14107 87 NMVFALFKPLLREK------LRNRIFFHS 109 (151)
Q Consensus 87 ~~~~~~~k~fl~~~------~~~ki~~~~ 109 (151)
..++..++.+||.+ ..+|++++.
T Consensus 72 ~il~~aVrGMLPk~~~~Gr~~~krLkvy~ 100 (142)
T TIGR01077 72 RIFRRTVRGMLPHKTARGRAALRRLKVYV 100 (142)
T ss_pred HHHHHHHHHhCCCCChhHHHHHhCcEEec
Confidence 35677778888864 346677774
No 46
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=21.86 E-value=1.7e+02 Score=19.27 Aligned_cols=64 Identities=16% Similarity=0.341 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEcc-CChhHHhccCCCCCC
Q psy14107 58 FAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHS-TDRDSLHKYLNPECL 124 (151)
Q Consensus 58 ~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~-~~~~~L~~~i~~~~L 124 (151)
++..+.+.++..-|-+++.+.+-.... .-+..++ +++++++.++|.+.. .....+.+.+..+++
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~~~~--~~~~~iL-~~l~p~~L~~i~i~~~~~~~~~~~i~~~eqW 67 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINSLNQ--SEVLSIL-PFLDPGVLEEIRINDEEEEEDFDEIVELEQW 67 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEcCCH--HHHHHHH-hcCCCCcCEEEECcCcccccchhheeehHHh
Confidence 456677777777778888777654332 3333333 788888888888831 122344444444433
No 47
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.79 E-value=4.2e+02 Score=22.17 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=58.6
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCC----h
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD----R 112 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~----~ 112 (151)
-++|||..|-+.. +...+.++..+++..-|... ++++++..--+-+..+++.|=. --...+.+..-| .
T Consensus 322 DvVLIDTaGRs~k-----d~~lm~EL~~~lk~~~Pdev--lLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~ 393 (436)
T PRK11889 322 DYILIDTAGKNYR-----ASETVEEMIETMGQVEPDYI--CLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS 393 (436)
T ss_pred CEEEEeCccccCc-----CHHHHHHHHHHHhhcCCCeE--EEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCc
Confidence 5679999998765 34567777777777777643 5667777676777788877754 223455554312 2
Q ss_pred hHHhccCCCCCCCCCCCCCCC
Q psy14107 113 DSLHKYLNPECLPEHYKGTLD 133 (151)
Q Consensus 113 ~~L~~~i~~~~LP~~~GG~~~ 133 (151)
..+........+|..|=|+.+
T Consensus 394 G~iLni~~~~~lPIsyit~GQ 414 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMTDGQ 414 (436)
T ss_pred cHHHHHHHHHCcCEEEEeCCC
Confidence 346666667788888865543
No 48
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=21.43 E-value=71 Score=19.24 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhHHhcCceEEccCChh---H----HhccCCCCCCCCCCC
Q psy14107 87 NMVFALFKPLLREKLRNRIFFHSTDRD---S----LHKYLNPECLPEHYK 129 (151)
Q Consensus 87 ~~~~~~~k~fl~~~~~~ki~~~~~~~~---~----L~~~i~~~~LP~~~G 129 (151)
+..|..+.|+|++.....=.--.++.+ . +..-++=..||.+||
T Consensus 3 D~~W~~i~p~lp~~~~~~~~~~~~~R~v~~ail~~lrtG~~Wr~LP~~fg 52 (75)
T PF13340_consen 3 DEEWALIEPLLPPRKPRGGRPRIDLREVLNAILYVLRTGCPWRDLPEDFG 52 (75)
T ss_pred HHHHHHHHhhCCCCCCCCCCCccchHHHHhcccccceecceecccchhcc
Confidence 457999999999865432000001111 1 222244578999998
No 49
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=21.41 E-value=3.1e+02 Score=19.46 Aligned_cols=78 Identities=27% Similarity=0.429 Sum_probs=46.2
Q ss_pred cccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCC--hhH-------HhccC
Q psy14107 49 QQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD--RDS-------LHKYL 119 (151)
Q Consensus 49 ~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~--~~~-------L~~~i 119 (151)
+++| ++-+....+++.+.+..... .+|-+|-+|+++..+-+ ....+.++.++.-| ++. ..++-
T Consensus 3 sQfw-Ys~~T~~~l~~~l~~~~~~~-~~iaclstPsl~~~l~~------~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~ 74 (162)
T PF10237_consen 3 SQFW-YSDETAEFLARELLDGALDD-TRIACLSTPSLYEALKK------ESKPRIQSFLLEYDRRFEQFGGDEFVFYDYN 74 (162)
T ss_pred cccc-cCHHHHHHHHHHHHHhcCCC-CEEEEEeCcHHHHHHHh------hcCCCccEEEEeecchHHhcCCcceEECCCC
Confidence 4554 35556666666666643222 78999999999987765 34445555555312 122 22233
Q ss_pred CCCCCCCCCCCCCCC
Q psy14107 120 NPECLPEHYKGTLDV 134 (151)
Q Consensus 120 ~~~~LP~~~GG~~~~ 134 (151)
.+..+|.++.|+.+.
T Consensus 75 ~p~~~~~~l~~~~d~ 89 (162)
T PF10237_consen 75 EPEELPEELKGKFDV 89 (162)
T ss_pred ChhhhhhhcCCCceE
Confidence 467888888776543
No 50
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=21.22 E-value=29 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=45.2
Q ss_pred HHHHHHHhhcccceeeceEEEEe--CChHHHHHHHHHHHhhhHHhcCceEEccCChhHHhccC
Q psy14107 59 AKRIVDWLQDSIPLRVKGIHVVN--QPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYL 119 (151)
Q Consensus 59 ~k~~~~~l~~~yP~rl~~i~iin--~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~i 119 (151)
...=.+-+..|+-.+-+.|+.=| ++.|=.-.|-++|.|||...+.+.-.-..|...|+.+|
T Consensus 66 C~~Wk~eIl~hH~~~~~~i~W~NC~P~~W~~~~WEVAKafMPrG~~d~~gpe~cDasALLNli 128 (307)
T PF15112_consen 66 CEEWKKEILSHHTNRNGTIHWGNCRPTKWPTDPWEVAKAFMPRGQADKTGPEECDASALLNLI 128 (307)
T ss_pred HHHHHHHHHHHcCCCCCCccccCCCCCcCCCcHHHHHHHhcCCcccccCChhhcCHHHHHHHH
Confidence 33334455678888889899988 67676679999999999998777665444556677665
No 51
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=20.57 E-value=1e+02 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHhcCceE
Q psy14107 87 NMVFALFKPLLREKLRNRIF 106 (151)
Q Consensus 87 ~~~~~~~k~fl~~~~~~ki~ 106 (151)
..+|+.++.++++...++|.
T Consensus 32 ~y~~~~L~~~L~e~~~~~v~ 51 (97)
T PF08152_consen 32 GYAWRILRRQLSEEIADKVK 51 (97)
T ss_dssp HHHHHHHHHHS-HHHHTT-E
T ss_pred hhHHHHHHHhcCHHHHHhhC
Confidence 46899999999999998875
No 52
>PF11885 DUF3405: Protein of unknown function (DUF3405); InterPro: IPR021822 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 636 to 810 amino acids in length.
Probab=20.55 E-value=4.6e+02 Score=22.40 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCcc
Q psy14107 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQ 49 (151)
Q Consensus 3 ~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~ 49 (151)
+.|+..+++.+|+.-+..++.|..++.- ...++.++++.++-.+.
T Consensus 109 R~w~g~~yte~di~~lRSLIsELSL~SG--GEY~V~lLVhVKD~~~~ 153 (496)
T PF11885_consen 109 RTWTGYKYTENDIQNLRSLISELSLRSG--GEYDVHLLVHVKDDDLP 153 (496)
T ss_pred EecCCCCcCHHHHHhHHHHHHHHhhhcC--CceEEEEEEEecCCCCC
Confidence 4577889999999999999999999762 35789999999997765
No 53
>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=45 Score=20.53 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCce
Q psy14107 54 FTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRI 105 (151)
Q Consensus 54 ~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki 105 (151)
..+.++|.+...+.+.||+.+..=|=-| ..+..-+.+.-|.++|++|
T Consensus 4 IR~~~vKR~a~el~ekY~~~ft~dFe~N-----K~~V~e~~~i~SK~lRN~I 50 (74)
T COG1383 4 IRPKFVKRTARELIEKYPDKFTDDFETN-----KRLVEELANIQSKKLRNRI 50 (74)
T ss_pred cchHHHHHHHHHHHHHhHHHhcccHHHH-----HHHHHHHhcchhHHHHHHH
Confidence 4578899999999999999887443333 1222223344455555554
Done!