Query psy14107
Match_columns 151
No_of_seqs 163 out of 1035
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:43:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 8.6E-37 2.9E-41 237.5 9.1 142 2-143 162-303 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 9E-36 3.1E-40 225.4 9.3 134 3-137 104-238 (262)
3 1aua_A Phosphatidylinositol tr 100.0 2.1E-33 7.2E-38 216.2 9.9 142 3-145 124-281 (296)
4 1olm_A SEC14-like protein 2; l 100.0 7.8E-33 2.7E-37 221.2 7.2 136 2-137 103-250 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 2E-32 6.8E-37 213.2 7.2 141 3-144 139-295 (320)
6 3pg7_A Neurofibromin; SEC lipi 99.0 8.9E-10 3.1E-14 83.0 7.5 114 2-124 30-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 2.1E-08 7.1E-13 76.7 4.9 114 2-124 49-163 (290)
8 2q3l_A Uncharacterized protein 74.9 11 0.00036 24.5 6.2 83 9-100 29-111 (126)
9 3sbx_A Putative uncharacterize 55.0 15 0.0005 25.9 4.0 45 75-120 139-188 (189)
10 2oo3_A Protein involved in cat 54.8 11 0.00038 28.3 3.5 32 71-102 234-265 (283)
11 3qua_A Putative uncharacterize 46.2 25 0.00087 24.8 4.1 46 75-121 148-198 (199)
12 1b6g_A Haloalkane dehalogenase 44.8 46 0.0016 24.1 5.6 47 37-83 76-150 (310)
13 1ehy_A Protein (soluble epoxid 41.0 46 0.0016 23.6 5.0 17 67-83 117-133 (294)
14 3ct6_A PTS-dependent dihydroxy 39.0 43 0.0015 21.8 4.1 43 35-93 59-101 (131)
15 2vqe_B 30S ribosomal protein S 38.7 41 0.0014 24.8 4.3 68 67-136 30-106 (256)
16 2ka5_A Putative anti-sigma fac 38.0 74 0.0025 19.9 5.4 51 37-93 53-103 (125)
17 3t6o_A Sulfate transporter/ant 36.9 73 0.0025 19.7 4.9 51 37-93 49-100 (121)
18 3mvn_A UDP-N-acetylmuramate:L- 36.8 52 0.0018 21.9 4.4 39 34-83 34-72 (163)
19 2xmz_A Hydrolase, alpha/beta h 34.2 78 0.0027 21.9 5.2 47 37-83 44-117 (269)
20 1pdo_A Mannose permease; phosp 33.2 58 0.002 21.0 4.1 60 11-90 40-102 (135)
21 2xzm_B RPS0E; ribosome, transl 32.6 46 0.0016 24.3 3.7 68 68-135 32-107 (241)
22 3j20_B 30S ribosomal protein S 32.5 60 0.0021 23.0 4.2 68 67-135 30-104 (202)
23 3iz6_A 40S ribosomal protein S 31.4 38 0.0013 25.7 3.2 69 67-135 40-115 (305)
24 2xt0_A Haloalkane dehalogenase 31.2 80 0.0027 22.5 5.0 47 37-83 75-149 (297)
25 1sbo_A Putative anti-sigma fac 30.3 88 0.003 18.5 5.6 50 38-93 46-95 (110)
26 3u5c_A 40S ribosomal protein S 29.1 38 0.0013 25.0 2.8 69 67-135 35-110 (252)
27 3hss_A Putative bromoperoxidas 29.0 1.2E+02 0.004 20.9 5.5 59 7-85 88-146 (293)
28 4b6a_O 60S ribosomal protein L 28.9 74 0.0025 22.5 4.1 23 87-109 78-106 (199)
29 3ny7_A YCHM protein, sulfate t 28.0 1.1E+02 0.0038 18.9 5.3 49 37-92 47-95 (118)
30 2a33_A Hypothetical protein; s 27.8 63 0.0021 23.0 3.7 46 74-120 139-189 (215)
31 3afi_E Haloalkane dehalogenase 27.2 94 0.0032 22.4 4.8 46 37-82 57-128 (316)
32 2zkr_j 60S ribosomal protein L 26.6 53 0.0018 23.4 3.1 24 86-109 77-106 (203)
33 3bbn_B Ribosomal protein S2; s 25.6 72 0.0025 23.1 3.7 67 68-136 30-105 (231)
34 1kdl_A YOPD protein; yersinia, 24.0 39 0.0013 15.6 1.3 15 58-72 3-17 (26)
35 1ydh_A AT5G11950; structural g 23.9 1.1E+02 0.0038 21.7 4.4 45 74-119 135-184 (216)
36 3llo_A Prestin; STAS domain, c 23.8 1.4E+02 0.0049 18.8 5.3 50 37-92 65-114 (143)
37 4hyl_A Stage II sporulation pr 23.4 89 0.003 19.0 3.5 63 38-113 44-106 (117)
38 2kln_A Probable sulphate-trans 23.1 1.4E+02 0.0049 18.5 5.0 50 37-92 49-98 (130)
39 1vi6_A 30S ribosomal protein S 22.6 45 0.0015 23.8 2.1 68 68-136 35-109 (208)
40 2qzg_A Conserved uncharacteriz 21.8 1.5E+02 0.0051 18.3 4.1 30 3-32 3-32 (94)
41 3bch_A 40S ribosomal protein S 21.3 43 0.0015 24.7 1.8 68 68-135 70-144 (253)
42 3bed_A PTS system, IIA compone 20.9 52 0.0018 21.5 2.0 41 35-90 62-105 (142)
43 4dgh_A Sulfate permease family 20.8 1.6E+02 0.0055 18.3 5.4 51 37-93 50-100 (130)
44 2zqe_A MUTS2 protein; alpha/be 20.5 80 0.0027 18.7 2.7 52 40-99 6-57 (83)
45 2iz6_A Molybdenum cofactor car 20.3 78 0.0027 21.7 2.9 49 57-118 119-167 (176)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=8.6e-37 Score=237.49 Aligned_cols=142 Identities=29% Similarity=0.538 Sum_probs=133.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEe
Q psy14107 2 DQNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVN 81 (151)
Q Consensus 2 ~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin 81 (151)
.++||+++++.++++|++++++|.++.++..+++|+++|+|++|+|++|+++++++.++.++.++|++||+|++++||||
T Consensus 162 ~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN 241 (316)
T 3hx3_A 162 IENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIH 241 (316)
T ss_dssp CTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEES
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEe
Confidence 47899999999999999999999999876677899999999999999998888999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhHHhcCceEEccCChhHHhccCCCCCCCCCCCCCCCCcchhhhccc
Q psy14107 82 QPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECLPEHYKGTLDVSLVTAIGQY 143 (151)
Q Consensus 82 ~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~~~~~~~~ 143 (151)
+|++|.++|+++||||+++|++||++++++.++|.++||+++||++|||++++.+.++|-+.
T Consensus 242 ~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~~~d~~~~~~~ 303 (316)
T 3hx3_A 242 QPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQ 303 (316)
T ss_dssp CCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSBCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCCCCcChhHHHHH
Confidence 99999999999999999999999999987889999999999999999999998887766543
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=9e-36 Score=225.40 Aligned_cols=134 Identities=36% Similarity=0.637 Sum_probs=125.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeC
Q psy14107 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQ 82 (151)
Q Consensus 3 ~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~ 82 (151)
+++||+.++.++++|+.++++|.++.+++.+++|+++|+|++|+|++|+++++++.++.++.++|++||+|++++||||+
T Consensus 104 ~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~ 183 (262)
T 1r5l_A 104 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE 183 (262)
T ss_dssp GGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESC
T ss_pred cccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeC
Confidence 57899999999999999999999988766678999999999999999998888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhHHhcCceEEccCCh-hHHhccCCCCCCCCCCCCCCCCcch
Q psy14107 83 PTIFNMVFALFKPLLREKLRNRIFFHSTDR-DSLHKYLNPECLPEHYKGTLDVSLV 137 (151)
Q Consensus 83 P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~-~~L~~~i~~~~LP~~~GG~~~~~~~ 137 (151)
|++|+++|+++||||+++|++||+++++++ ++|.++|| ++||++|||++++.+.
T Consensus 184 P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~ 238 (262)
T 1r5l_A 184 PVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMED 238 (262)
T ss_dssp CGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHH
T ss_pred CHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHH
Confidence 999999999999999999999999997665 78999999 9999999999986543
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.1e-33 Score=216.23 Aligned_cols=142 Identities=22% Similarity=0.329 Sum_probs=122.9
Q ss_pred CCCCCCC----CCHHHHHHHHHHHHHHHhcCC--------CCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhccc
Q psy14107 3 QNWKHKK----VCLDEVFKGAVLFLEAAMMEP--------SSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSI 70 (151)
Q Consensus 3 ~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~y 70 (151)
+++|+++ .+.++++|++++.+|.+++.. ..+++++++|+|++|+|++|++++ ++.++.++.++|++|
T Consensus 124 g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~Y 202 (296)
T 1aua_A 124 GAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYY 202 (296)
T ss_dssp GGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred ccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhH
Confidence 4456543 589999999999999987541 235789999999999999998755 788999999999999
Q ss_pred ceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCCh-hHHhccCCCCCCCCCCCCCCCCcc---hhhhccccc
Q psy14107 71 PLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDR-DSLHKYLNPECLPEHYKGTLDVSL---VTAIGQYGY 145 (151)
Q Consensus 71 P~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~-~~L~~~i~~~~LP~~~GG~~~~~~---~~~~~~~g~ 145 (151)
|+|++++||||+|++|.++|+++||||+++|++||+|+++++ ++|.++||+++||++|||++++.+ ++..++.|.
T Consensus 203 Perl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g~~~~~~~~ 281 (296)
T 1aua_A 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGP 281 (296)
T ss_dssp TTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCCSTTCCCSG
T ss_pred HHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCCCCCCceeCCCCC
Confidence 999999999999999999999999999999999999997665 579999999999999999999877 444444444
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.97 E-value=7.8e-33 Score=221.20 Aligned_cols=136 Identities=22% Similarity=0.402 Sum_probs=122.7
Q ss_pred CCCCCCC----CCCHHHHHHHHHHHHHHHhcCCCC-------CcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhccc
Q psy14107 2 DQNWKHK----KVCLDEVFKGAVLFLEAAMMEPSS-------QVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSI 70 (151)
Q Consensus 2 ~~~~d~~----~~~~~~~~r~~~~~~E~~~~~~~~-------~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~y 70 (151)
.+++|++ .++.++++|++++++|.++++... +++|+++|+|++|++++|+++..++.++.+++++|++|
T Consensus 103 ~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~Y 182 (403)
T 1olm_A 103 IGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENY 182 (403)
T ss_dssp CTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhC
Confidence 3567876 589999999999999999875432 47899999999999999987656788999999999999
Q ss_pred ceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCCh-hHHhccCCCCCCCCCCCCCCCCcch
Q psy14107 71 PLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDR-DSLHKYLNPECLPEHYKGTLDVSLV 137 (151)
Q Consensus 71 P~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~-~~L~~~i~~~~LP~~~GG~~~~~~~ 137 (151)
|+|++++||||+|++|.++|+++||||+++|++||+|+++++ ++|.++||+++||++|||+++++++
T Consensus 183 Perl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~~ 250 (403)
T 1olm_A 183 PETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDG 250 (403)
T ss_dssp TTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCTTC
T ss_pred cHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCCCC
Confidence 999999999999999999999999999999999999997665 4799999999999999999988665
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.97 E-value=2e-32 Score=213.22 Aligned_cols=141 Identities=22% Similarity=0.319 Sum_probs=122.7
Q ss_pred CCCCCCC----CCHHHHHHHHHHHHHHHhcC--------CCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhccc
Q psy14107 3 QNWKHKK----VCLDEVFKGAVLFLEAAMME--------PSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSI 70 (151)
Q Consensus 3 ~~~d~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~y 70 (151)
|++|+++ .+.++++|++++.+|.+++. ....++++++|+|++|+|+++++++ ++.++.++.++|++|
T Consensus 139 g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~Y 217 (320)
T 3q8g_A 139 GGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYY 217 (320)
T ss_dssp TTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhC
Confidence 5667665 48899999999999998743 1123678899999999999998764 788999999999999
Q ss_pred ceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCCh-hHHhccCCCCCCCCCCCCCCCCcc---hhhhcccc
Q psy14107 71 PLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDR-DSLHKYLNPECLPEHYKGTLDVSL---VTAIGQYG 144 (151)
Q Consensus 71 P~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~-~~L~~~i~~~~LP~~~GG~~~~~~---~~~~~~~g 144 (151)
|+|++++||||+|++|.++|+++|+||+++|++||+|+++++ ++|.++||+++||++|||++++.+ ++..+++|
T Consensus 218 Perl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~g 295 (320)
T 3q8g_A 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIG 295 (320)
T ss_dssp TTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBS
T ss_pred chhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCCCCCCCCeecCCCC
Confidence 999999999999999999999999999999999999998765 689999999999999999999844 36666666
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.00 E-value=8.9e-10 Score=82.99 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=91.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEe
Q psy14107 2 DQNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVN 81 (151)
Q Consensus 2 ~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin 81 (151)
++++++...+.+.++.+++.++|... ...+.+|+|+++++..+.. +.+.++.+.+++-..|..+++++|++|
T Consensus 30 ~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p--~~~wl~~~~~llp~~~~kNlk~~Yivn 101 (256)
T 3pg7_A 30 ARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYN 101 (256)
T ss_dssp GGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCC--CHHHHHHTTTSSCHHHHHTEEEEEEES
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCC--cHHHHHHHHHHcCHHHHhcccEEEEEC
Confidence 34566666777777776666665332 3569999999999988754 678999999999999999999999999
Q ss_pred CChHHHHHHHH-HHHhhhHHhcCceEEccCChhHHhccCCCCCC
Q psy14107 82 QPTIFNMVFAL-FKPLLREKLRNRIFFHSTDRDSLHKYLNPECL 124 (151)
Q Consensus 82 ~P~~~~~~~~~-~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~L 124 (151)
++++++..++. .++|.+.+..+|++++ ++.++|.++|+.++|
T Consensus 102 pt~~~k~~~~~~~~~~~~~k~~~Ki~fv-~sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 102 CNSWVREYTKYHERLLTGLKGSKRLVFI-DCPGKLAEHIEHEQQ 144 (256)
T ss_dssp CCHHHHHHHHHTHHHHTTTTTCTTEEEE-SSTTGGGGTSCGGGC
T ss_pred CCHHHHHHHHHHhccccccccCCcEEEE-CCHHHHHhhcCHHHc
Confidence 99999977665 4667666888999999 468999999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=76.74 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=82.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEe
Q psy14107 2 DQNWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVN 81 (151)
Q Consensus 2 ~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin 81 (151)
++++++...+.+.++-+++.+++... ...+.+|+|+++++..+.. +.++++.+..++...|+.+++++|++|
T Consensus 49 ~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n~p--~~~~l~~~~~llp~~~~kNl~~~Yi~n 120 (290)
T 3peg_A 49 ARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYN 120 (290)
T ss_dssp GGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCC--CHHHHGGGGTSSCHHHHHTEEEEEEES
T ss_pred eecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccCCC--hHHHHHHHHHHCCHHHHhhccEEEEEC
Confidence 35666667777766666666554322 3579999999999988743 678999999999999999999999999
Q ss_pred CChHHHHHH-HHHHHhhhHHhcCceEEccCChhHHhccCCCCCC
Q psy14107 82 QPTIFNMVF-ALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECL 124 (151)
Q Consensus 82 ~P~~~~~~~-~~~k~fl~~~~~~ki~~~~~~~~~L~~~i~~~~L 124 (151)
++.+|...+ ...+++.+.+..+|+.+++ +..+|.++++.+++
T Consensus 121 p~~~f~~~~k~~~~~~~~~k~~~k~v~~~-~~~~L~~~i~~~~~ 163 (290)
T 3peg_A 121 CNSWVREYTKYHERLLTGLKGSKRLVFID-CPGKLAEHIEHEQQ 163 (290)
T ss_dssp CCHHHHHHHHHTTTTGGGGTTCTTEEEES-SSCC----------
T ss_pred CCHHHHHHHHHHHhhhhhhhcCceEEEcC-CHHHHHhhCCHHHh
Confidence 999998755 4667888889999999984 45668888887643
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=74.88 E-value=11 Score=24.46 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHH
Q psy14107 9 KVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNM 88 (151)
Q Consensus 9 ~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~ 88 (151)
+++.+|+-+ +.=.+|..+.+... ..+.+++|++++. .+++..+-+-+++-..|. ..+.++=||-.+.+...
T Consensus 29 ~lt~~d~~~-l~~~l~~~l~~~~~--~~i~ll~~~~~f~-----G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~ 99 (126)
T 2q3l_A 29 KLTHEDYEQ-MTPLLESALAGIKT--PEIVALIDITELD-----GLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEW 99 (126)
T ss_dssp EECHHHHHH-HHHHHHHHTTTCCS--SCEEEEEEEEEEE-----EECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHH
T ss_pred eECHHHHHH-HHHHHHHHHHhCCC--ceEEEEEEecCCC-----CCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHH
Confidence 457777776 66677777754321 2256666654321 112333322233323343 67889999999999999
Q ss_pred HHHHHHHhhhHH
Q psy14107 89 VFALFKPLLREK 100 (151)
Q Consensus 89 ~~~~~k~fl~~~ 100 (151)
+.++..+|++..
T Consensus 100 ~~~~~~~~~~~e 111 (126)
T 2q3l_A 100 ATRVANWFTPGE 111 (126)
T ss_dssp HHHHHHHHCSSE
T ss_pred HHHHHhhccCCc
Confidence 999999997654
No 9
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=55.00 E-value=15 Score=25.85 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred ceEEEEeCChHHHHHHHHHHH-----hhhHHhcCceEEccCChhHHhccCC
Q psy14107 75 KGIHVVNQPTIFNMVFALFKP-----LLREKLRNRIFFHSTDRDSLHKYLN 120 (151)
Q Consensus 75 ~~i~iin~P~~~~~~~~~~k~-----fl~~~~~~ki~~~~~~~~~L~~~i~ 120 (151)
+-++++|..-+++-++.+++. |++++.++.+.+. ++.+++.+.+.
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~ee~~~~l~ 188 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVV-DNLDDALQACA 188 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEE-SSHHHHHHHHC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEe-CCHHHHHHHhc
Confidence 579999998787777766543 7778888889988 47888777664
No 10
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=54.79 E-value=11 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.3
Q ss_pred ceeeceEEEEeCChHHHHHHHHHHHhhhHHhc
Q psy14107 71 PLRVKGIHVVNQPTIFNMVFALFKPLLREKLR 102 (151)
Q Consensus 71 P~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~ 102 (151)
...=..++|||+||-+....+-+-|++.+...
T Consensus 234 gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 234 GMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp SCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 33345799999999999888888888877554
No 11
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=46.21 E-value=25 Score=24.81 Aligned_cols=46 Identities=4% Similarity=0.169 Sum_probs=35.1
Q ss_pred ceEEEEeCChHHHHHHHHHHH-----hhhHHhcCceEEccCChhHHhccCCC
Q psy14107 75 KGIHVVNQPTIFNMVFALFKP-----LLREKLRNRIFFHSTDRDSLHKYLNP 121 (151)
Q Consensus 75 ~~i~iin~P~~~~~~~~~~k~-----fl~~~~~~ki~~~~~~~~~L~~~i~~ 121 (151)
+-++++|..-+++-++.+++. |++++.++.+.+. ++.+++.+.+.+
T Consensus 148 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~~e~~~~l~~ 198 (199)
T 3qua_A 148 KPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVV-DNVEAALEACAP 198 (199)
T ss_dssp CCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEE-SSHHHHHHHHSC
T ss_pred CCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEe-CCHHHHHHHHhc
Confidence 579999998788888887654 6667777888888 478887776653
No 12
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Probab=44.77 E-value=46 Score=24.07 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCccccc----cCCHHH----HHHHHHHh--------------------hcccceeeceEEEEeCC
Q psy14107 37 AQVIFDMDGLSLQQAW----QFTPTF----AKRIVDWL--------------------QDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~----~~~~~~----~k~~~~~l--------------------~~~yP~rl~~i~iin~P 83 (151)
-|+.+|+.|.+.|... ..+... +..++..+ ...||+|+.+++++|++
T Consensus 76 rvia~Dl~G~G~S~~~~~~~~y~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~ 150 (310)
T 1b6g_A 76 RVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX 150 (310)
T ss_dssp EEEEECCTTSTTSCEESCGGGCCHHHHHHHHHHHHHHHTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred eEEEeCCCCCCCCCCCCCcCCcCHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence 5788999999887532 134332 22333222 45689999999999974
No 13
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11
Probab=41.00 E-value=46 Score=23.64 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=14.4
Q ss_pred hcccceeeceEEEEeCC
Q psy14107 67 QDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 67 ~~~yP~rl~~i~iin~P 83 (151)
...||+|+.+++++++|
T Consensus 117 A~~~P~~v~~lvl~~~~ 133 (294)
T 1ehy_A 117 IRKYSDRVIKAAIFDPI 133 (294)
T ss_dssp HHHTGGGEEEEEEECCS
T ss_pred HHhChhheeEEEEecCC
Confidence 55699999999999963
No 14
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=39.04 E-value=43 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=26.1
Q ss_pred ccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 35 ~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
+|++++.|+ |-+..+. . +.+... . .++.++|.|.+...+-..+
T Consensus 59 dgVlvltDL-Ggsp~N~-----~-----~al~~~-~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMNL-----D-----LVSEMT-D----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESS-GGGHHHH-----H-----HHHHTC-S----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHHH-----H-----HHHHhc-C----CCEEEEEhhHHHHHHHHHH
Confidence 789999999 5544321 1 111111 1 2788889999977665443
No 15
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=38.74 E-value=41 Score=24.79 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=42.3
Q ss_pred hcccceeeceEEEEeCChHHHHHHHHHHHhhhH--HhcCceEEccCChh------HHhccCCCCCCC-CCCCCCCCCcc
Q psy14107 67 QDSIPLRVKGIHVVNQPTIFNMVFALFKPLLRE--KLRNRIFFHSTDRD------SLHKYLNPECLP-EHYKGTLDVSL 136 (151)
Q Consensus 67 ~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~--~~~~ki~~~~~~~~------~L~~~i~~~~LP-~~~GG~~~~~~ 136 (151)
...|-+| ..+||||.-.....+-... .|+.. .-..+|-|+|+... +..+......+- +..||++.+..
T Consensus 30 ~YIyg~R-ngihIIdL~kT~~~L~~A~-~~i~~~a~~gg~iLfVgTk~~a~~~V~~~A~~~g~~yv~~RWlgG~LTN~~ 106 (256)
T 2vqe_B 30 RYIYAER-NGIHIIDLQKTMEELERTF-RFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFK 106 (256)
T ss_dssp TTEEEEE-TTEEEECHHHHHHHHHHHH-HHHHHHHTTTCCEEEECCSSSSTTTTTTTTTSSSCCEECSCCCTTTTTTHH
T ss_pred cceeccc-CCeEEEeHHHHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCeeCCCcccCHH
Confidence 3567888 9999999887776554433 33333 34577999975432 233344444444 44599998754
No 16
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=38.00 E-value=74 Score=19.93 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+|+|+++++.- +.+.+..+..+.+.. -.+=..+.++|++.-+..++.+.
T Consensus 53 ~~vvlDls~V~~i-----DSsGl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVESI-----DSFSLGVIVNILKSI-SSSGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSCC-----CHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCEE-----cHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHc
Confidence 3589999999854 445555554444332 23346789999998877776654
No 17
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=36.86 E-value=73 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccce-eeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPL-RVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~-rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+|+|+++++.- +.+-+..++.+.+.. -. +=..+.++|++.-+.-++.+.
T Consensus 49 ~~vvlDls~v~~i-----DSsGl~~L~~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 100 (121)
T 3t6o_A 49 RKVLIDLEGVEFF-----GSSFIELLVRGWKRI-KEDQQGVFALCSVSPYCVEVLQVT 100 (121)
T ss_dssp CEEEEECTTCCEE-----CHHHHHHHHHHHHHH-TTSTTCEEEEESCCHHHHHHHTTC
T ss_pred CeEEEECCCCCEE-----cHHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHHHHh
Confidence 4689999999864 445555555554332 33 446789999998887666543
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=36.85 E-value=52 Score=21.90 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=27.5
Q ss_pred cccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCC
Q psy14107 34 VAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 34 ~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P 83 (151)
..|+++|.|+.. +|+-++.++..+++.||. +++++|=-|
T Consensus 34 ~~g~~vi~DyaH---------nP~si~a~l~al~~~~~~--~riivvf~~ 72 (163)
T 3mvn_A 34 VNNITVYDDFAH---------HPTAITATIDALRAKVGQ--QRILAVLEP 72 (163)
T ss_dssp ETTEEEEEECCC---------SHHHHHHHHHHHHHHHTT--SCEEEEECC
T ss_pred CCCcEEEEcCCC---------CHHHHHHHHHHHHHhcCC--CcEEEEECC
Confidence 357899999532 467788899999888886 355555444
No 19
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Probab=34.19 E-value=78 Score=21.87 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=29.8
Q ss_pred EEEEEeCCCCCccccc---cCCHHH-HHHHHHH-----------------------hhcccceeeceEEEEeCC
Q psy14107 37 AQVIFDMDGLSLQQAW---QFTPTF-AKRIVDW-----------------------LQDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~---~~~~~~-~k~~~~~-----------------------l~~~yP~rl~~i~iin~P 83 (151)
-++.+|+.|.+.+.-. ..+... ...+..+ +...||+++.++++++++
T Consensus 44 ~vi~~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 117 (269)
T 2xmz_A 44 HVITIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTS 117 (269)
T ss_dssp EEEEECCTTSTTCCCCTTSCCCHHHHHHHHHHHHGGGTTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCC
T ss_pred eEEEecCCCCCCCCCCCCCccCHHHHHHHHHHHHHHcCCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCC
Confidence 5778899988776532 123332 2222222 245689999999999964
No 20
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=33.23 E-value=58 Score=21.02 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEE---eCChHHH
Q psy14107 11 CLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVV---NQPTIFN 87 (151)
Q Consensus 11 ~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~ii---n~P~~~~ 87 (151)
+++++.+-+ +.++++.+. -+|++++.|+-|-|..+. ...++.+ .+ ++.+| |.|.++.
T Consensus 40 ~~~~~~~~i----~~~i~~~~~-~~gvliLtDl~GGSp~n~----------a~~~~~~-~~----~v~vi~GvNlpmlle 99 (135)
T 1pdo_A 40 NAETLIEKY----NAQLAKLDT-TKGVLFLVDTWGGSPFNA----------ASRIVVD-KE----HYEVIAGVNIPMLVE 99 (135)
T ss_dssp CHHHHHHHH----HHHHTTSCC-TTCEEEEESSTTSHHHHH----------HHHHHTT-CT----TEEEEESCCHHHHHH
T ss_pred CHHHHHHHH----HHHHHhcCC-CCCEEEEEECCCCCHHHH----------HHHHHhc-cC----CEEEEeCCCHHHHHH
Confidence 445544432 334444332 378999999988876542 2333333 22 57788 9998888
Q ss_pred HHH
Q psy14107 88 MVF 90 (151)
Q Consensus 88 ~~~ 90 (151)
.+.
T Consensus 100 ~~~ 102 (135)
T 1pdo_A 100 TLM 102 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 21
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=32.65 E-value=46 Score=24.32 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=40.1
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCC-CC-CCCCCCCCc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECL-PE-HYKGTLDVS 135 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~L-P~-~~GG~~~~~ 135 (151)
..|-.|-..+||||.-.....+-...+.+-.-.-..+|.|+++... +..+......+ -. ..||++.+.
T Consensus 32 YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~ 107 (241)
T 2xzm_B 32 YISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNY 107 (241)
T ss_dssp TEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCT
T ss_pred cEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCc
Confidence 4566666789999988777655443332222122567888876532 23344454444 43 559988664
No 22
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.55 E-value=60 Score=22.99 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=42.3
Q ss_pred hcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCCh--h----HHhccCCCCCCCCC-CCCCCCCc
Q psy14107 67 QDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDR--D----SLHKYLNPECLPEH-YKGTLDVS 135 (151)
Q Consensus 67 ~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~--~----~L~~~i~~~~LP~~-~GG~~~~~ 135 (151)
+..|-.|-..+||||.-.....+-...+ |+...-..+|-|+++.. + +..+......+-.. .||++.+.
T Consensus 30 ~YIy~~r~~Gi~IIdL~kT~~~L~~A~~-~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~ 104 (202)
T 3j20_B 30 KFIYRVRQDGLYVLDVRKTDERLKVAGK-FLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNP 104 (202)
T ss_dssp GGEEEECTTSCEEECHHHHHHHHHHHHH-HHHHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCS
T ss_pred ccEeeeeCCCCEEECHHHHHHHHHHHHH-HHHhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccH
Confidence 4557777778999998777665544333 34333467888987542 1 34445555555554 48987654
No 23
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.43 E-value=38 Score=25.68 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=40.2
Q ss_pred hcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCc
Q psy14107 67 QDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVS 135 (151)
Q Consensus 67 ~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~ 135 (151)
+..|-.|-..+||||.-.....+....+-...-+-..+|.|+++... +..+......+-. ..||++.+.
T Consensus 40 pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~ 115 (305)
T 3iz6_A 40 RYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ 115 (305)
T ss_dssp TSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTT
T ss_pred ccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCc
Confidence 45577777789999988777655544432222223467888875432 2333344333333 458887654
No 24
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica}
Probab=31.18 E-value=80 Score=22.54 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCccccc----cCCHHH----HHHHHHHh--------------------hcccceeeceEEEEeCC
Q psy14107 37 AQVIFDMDGLSLQQAW----QFTPTF----AKRIVDWL--------------------QDSIPLRVKGIHVVNQP 83 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~----~~~~~~----~k~~~~~l--------------------~~~yP~rl~~i~iin~P 83 (151)
-++.+|+.|.+.|... ..+... +..++..+ ...||+|+.++++++++
T Consensus 75 rvia~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 75 RVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp EEEEECCTTSTTSCEESCGGGCCHHHHHHHHHHHHHHHTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred EEEEeCCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 5788999999887532 223332 22333322 44589999999999973
No 25
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=30.34 E-value=88 Score=18.52 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=30.8
Q ss_pred EEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 38 QVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 38 v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
.+|+|+++++.- +.+.+..+..+.+.. ..+=..+.+.|++.-+..++...
T Consensus 46 ~vvlDls~v~~i-----Dssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSYM-----DSAGLGTLVVILKDA-KINGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCCB-----CHHHHHHHHHHHHHH-HHTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEE-----ccHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHh
Confidence 468999999754 445555444443322 23345688889887776665543
No 26
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=29.14 E-value=38 Score=24.97 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=38.7
Q ss_pred hcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCc
Q psy14107 67 QDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVS 135 (151)
Q Consensus 67 ~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~ 135 (151)
+..|-.|-..+||||.-.....+....+.+-.-.-..+|.|+++... +..+......+-. ..||++.+.
T Consensus 35 ~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~ 110 (252)
T 3u5c_A 35 PYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNY 110 (252)
T ss_dssp CCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCT
T ss_pred hheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccCh
Confidence 34566776789999977766655444333222223567888875431 2334444434433 448887654
No 27
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A
Probab=29.01 E-value=1.2e+02 Score=20.90 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCcccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChH
Q psy14107 7 HKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTI 85 (151)
Q Consensus 7 ~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~ 85 (151)
+..++.+++.+.+.-+++..- ...++++ |.|+.-. ++..+...+|+++.++++++++..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~l~------~~~~~lv----GhS~Gg~----------ia~~~a~~~p~~v~~lvl~~~~~~ 146 (293)
T 3hss_A 88 AEGFTTQTMVADTAALIETLD------IAPARVV----GVSMGAF----------IAQELMVVAPELVSSAVLMATRGR 146 (293)
T ss_dssp CCSCCHHHHHHHHHHHHHHHT------CCSEEEE----EETHHHH----------HHHHHHHHCGGGEEEEEEESCCSS
T ss_pred cccCCHHHHHHHHHHHHHhcC------CCcEEEE----eeCccHH----------HHHHHHHHChHHHHhhheeccccc
Confidence 345677777777666666541 1234433 4444321 222234568999999999998743
No 28
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=28.93 E-value=74 Score=22.53 Aligned_cols=23 Identities=4% Similarity=0.254 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhH------HhcCceEEcc
Q psy14107 87 NMVFALFKPLLRE------KLRNRIFFHS 109 (151)
Q Consensus 87 ~~~~~~~k~fl~~------~~~~ki~~~~ 109 (151)
+.++..++-+||. ....|+.++.
T Consensus 78 ~il~~aVrGMLP~K~~lGr~~l~rLkVy~ 106 (199)
T 4b6a_O 78 RILYKAIRGMVSHKTARGKAALERLKIFE 106 (199)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHTEEECS
T ss_pred HHHHHHHhccCCCCChhhhHHHhccEEeC
Confidence 4567777777773 3446777763
No 29
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=27.97 E-value=1.1e+02 Score=18.90 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~ 92 (151)
-.+|+|+++++.- +.+-+..+..+.+.. -. =.++++.+.+.-+.-++..
T Consensus 47 ~~vilDl~~v~~i-----Dssgl~~L~~~~~~~-~~-g~~l~l~~~~~~v~~~l~~ 95 (118)
T 3ny7_A 47 RIVILKWDAVPVL-----DAGGLDAFQRFVKRL-PE-GCELRVCNVEFQPLRTMAR 95 (118)
T ss_dssp SEEEEEEEECCCB-----CHHHHHHHHHHHHHC-CT-TCEEEEECCCHHHHHHHHH
T ss_pred cEEEEEcCCCCee-----cHHHHHHHHHHHHHH-HC-CCEEEEecCCHHHHHHHHH
Confidence 4689999998753 556666666655443 34 5678899988776655543
No 30
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=27.85 E-value=63 Score=22.96 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=33.0
Q ss_pred eceEEEEeCChHHHHHHHHHH-----HhhhHHhcCceEEccCChhHHhccCC
Q psy14107 74 VKGIHVVNQPTIFNMVFALFK-----PLLREKLRNRIFFHSTDRDSLHKYLN 120 (151)
Q Consensus 74 l~~i~iin~P~~~~~~~~~~k-----~fl~~~~~~ki~~~~~~~~~L~~~i~ 120 (151)
-+-++++|..-+++-++.++. -|++++.++.+.+. ++.+++.+.+.
T Consensus 139 ~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l~ 189 (215)
T 2a33_A 139 DKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA-PTAKELVKKLE 189 (215)
T ss_dssp CCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE-SSHHHHHHHHH
T ss_pred CCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEe-CCHHHHHHHHH
Confidence 456899998877777777653 36677888888888 46777665553
No 31
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Probab=27.20 E-value=94 Score=22.36 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=30.0
Q ss_pred EEEEEeCCCCCccccc--cCCHHH----HHHHHH--------------------HhhcccceeeceEEEEeC
Q psy14107 37 AQVIFDMDGLSLQQAW--QFTPTF----AKRIVD--------------------WLQDSIPLRVKGIHVVNQ 82 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~--~~~~~~----~k~~~~--------------------~l~~~yP~rl~~i~iin~ 82 (151)
-++.+|+.|.+.|... ..+... +..+++ .+...||+|+.+++++++
T Consensus 57 ~via~Dl~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 57 HCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp EEEEECCTTSTTSCCCSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 5788999999887532 123332 222222 225569999999999986
No 32
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.55 E-value=53 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhHH------hcCceEEcc
Q psy14107 86 FNMVFALFKPLLREK------LRNRIFFHS 109 (151)
Q Consensus 86 ~~~~~~~~k~fl~~~------~~~ki~~~~ 109 (151)
-..+|..++-+||.+ ..+|++++.
T Consensus 77 ~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~ 106 (203)
T 2zkr_j 77 SRIFWRTVRGMLPHKTKRGQAALDRLKVFD 106 (203)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHTEEECS
T ss_pred HHHHHHHHHhhCCCCChhHHHHHhCcEEeC
Confidence 456777788888763 336787763
No 33
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=25.63 E-value=72 Score=23.07 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhH--HhcCceEEccCChh------HHhccCCCCCCC-CCCCCCCCCcc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLRE--KLRNRIFFHSTDRD------SLHKYLNPECLP-EHYKGTLDVSL 136 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~--~~~~ki~~~~~~~~------~L~~~i~~~~LP-~~~GG~~~~~~ 136 (151)
..|-+| ..+||||.-.....+-... .|+.. +-..+|-|+|+... +..+......+- +..||++.+..
T Consensus 30 yIy~~R-ngihIIdL~kT~~~L~~A~-~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~rWlgG~LTN~~ 105 (231)
T 3bbn_B 30 YISAKC-KGIHIINLTRTARFLSEAC-DLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWS 105 (231)
T ss_dssp GEEEEE-TTEEEECHHHHHHHTHHHH-HHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCSSSCHH
T ss_pred ceeccc-CCcEEeeHHHHHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCccccccccCCCCcCHH
Confidence 457788 8999999887776554433 34432 24577999976432 344445554554 35599998754
No 34
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.03 E-value=39 Score=15.58 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHhhcccce
Q psy14107 58 FAKRIVDWLQDSIPL 72 (151)
Q Consensus 58 ~~k~~~~~l~~~yP~ 72 (151)
+++++++++|.+|-.
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 577888888877643
No 35
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=23.86 E-value=1.1e+02 Score=21.68 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred eceEEEEeCChHHHHHHHHHHH-----hhhHHhcCceEEccCChhHHhccC
Q psy14107 74 VKGIHVVNQPTIFNMVFALFKP-----LLREKLRNRIFFHSTDRDSLHKYL 119 (151)
Q Consensus 74 l~~i~iin~P~~~~~~~~~~k~-----fl~~~~~~ki~~~~~~~~~L~~~i 119 (151)
-+-++++|..-+++-++.++.. |++++.++.+.+. ++.+++.+.+
T Consensus 135 ~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l 184 (216)
T 1ydh_A 135 KKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA-PTAKELMEKM 184 (216)
T ss_dssp CCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE-SSHHHHHHHH
T ss_pred CCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEe-CCHHHHHHHH
Confidence 3568999988777777776543 6778888899988 4677655444
No 36
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=23.78 E-value=1.4e+02 Score=18.81 Aligned_cols=50 Identities=8% Similarity=-0.023 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~ 92 (151)
-.+|+|+++++.- +.+-+..+..+.+ .+-.+=..+++.|++.-+.-++..
T Consensus 65 ~~vvlDls~v~~i-----Dssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~ 114 (143)
T 3llo_A 65 HTVILDFTQVNFM-----DSVGVKTLAGIVK-EYGDVGIYVYLAGCSAQVVNDLTS 114 (143)
T ss_dssp SEEEEECTTCCCC-----CHHHHHHHHHHHH-HHHTTTCEEEEESCCHHHHHHHHH
T ss_pred eEEEEECCCCccc-----cHHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHHHh
Confidence 4689999998754 4455554444432 333455689999998777655544
No 37
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=23.40 E-value=89 Score=19.01 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=39.7
Q ss_pred EEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh
Q psy14107 38 QVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD 113 (151)
Q Consensus 38 v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~ 113 (151)
.+|+|+++++.- +.+-+..++.+.+.. -.+=.++.++|++.-+..++.+.. +.+.+.++. +.+
T Consensus 44 ~vvlDls~v~~i-----Dssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~-~~~ 106 (117)
T 4hyl_A 44 KMILDLREVSYM-----SSAGLRVLLSLYRHT-SNQQGALVLVGVSEEIRDTMEITG------FWNFFTACA-SMD 106 (117)
T ss_dssp EEEEEEEEEEEE-----CHHHHHHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHHHT------CGGGCEEES-CHH
T ss_pred eEEEECCCCcEE-----cHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHhC------ccceeeecC-CHH
Confidence 889999998754 445555555444332 234467899999988887776553 223456663 444
No 38
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=23.11 E-value=1.4e+02 Score=18.54 Aligned_cols=50 Identities=4% Similarity=-0.116 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFAL 92 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~ 92 (151)
-.+|+|+++++.-... ....+..+.+.++. +=..+++.|.+.-+.-++..
T Consensus 49 ~~vvlDls~v~~iDss--gl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~ 98 (130)
T 2kln_A 49 EWFVLNAESNVEVDLT--ALDALDQLRTELLR----RGIVFAMARVKQDLRESLRA 98 (130)
T ss_dssp EEEEEECSCCSSSBCS--TTTHHHHHHHHHHT----TTEEEEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCChhhHH--HHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHHHHH
Confidence 4789999999865432 34455555555543 34568899988776655554
No 39
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=22.56 E-value=45 Score=23.79 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=37.5
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCCC-CCCCCCCcc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPEH-YKGTLDVSL 136 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~~-~GG~~~~~~ 136 (151)
.-|-+|-..+||||.-.....+-...+. +..--..+|-|+++... +..+......+-.. .||++.+..
T Consensus 35 YIy~~R~~gihIIdL~kT~~~L~~A~~~-i~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~ 109 (208)
T 1vi6_A 35 FIFKVRQDGLYVLDIRKLDERIRVAAKF-LSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM 109 (208)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHHH-HTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT
T ss_pred eEEeeeCCCcEEEcHHHHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChh
Confidence 3455665678888877666655443332 22224567888865432 23344444444443 488876543
No 40
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=21.75 E-value=1.5e+02 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q psy14107 3 QNWKHKKVCLDEVFKGAVLFLEAAMMEPSS 32 (151)
Q Consensus 3 ~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~ 32 (151)
+.|..++...++.++..+++++....+...
T Consensus 3 ~~~~~~~~e~e~~ik~~~~~L~~I~~D~sV 32 (94)
T 2qzg_A 3 AMFSAKKLSPADKLKNISSMLEEIVEDTTV 32 (94)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHTCTTS
T ss_pred cchhhhhcchHHHHHHHHHHHHHHHcCCCC
Confidence 457789999999999999999999877553
No 41
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=21.26 E-value=43 Score=24.70 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=40.1
Q ss_pred cccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChh------HHhccCCCCCCCC-CCCCCCCCc
Q psy14107 68 DSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRD------SLHKYLNPECLPE-HYKGTLDVS 135 (151)
Q Consensus 68 ~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~------~L~~~i~~~~LP~-~~GG~~~~~ 135 (151)
..|-+|-..+||||.-.....+-...+.+..-.-..+|-|+++... +..+......+-. ..||++.+.
T Consensus 70 YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~ 144 (253)
T 3bch_A 70 YIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 144 (253)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCC
T ss_pred cEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCc
Confidence 4466676789999988776655544433332223567888876532 2334444444444 348887654
No 42
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=20.87 E-value=52 Score=21.48 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=28.1
Q ss_pred ccEEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEE---eCChHHHHHH
Q psy14107 35 AGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVV---NQPTIFNMVF 90 (151)
Q Consensus 35 ~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~ii---n~P~~~~~~~ 90 (151)
+|++++.|+-|-|..+. ...++.+ . .++.+| |.|.+...+.
T Consensus 62 ~gvliLtDl~GGSp~n~----------a~~~~~~-~----~~v~vi~GvNlpmlle~~~ 105 (142)
T 3bed_A 62 VPTLVLADLXGGTPCNV----------AMMAMGT-Y----PQLRVVAGLNLAMAIEAAV 105 (142)
T ss_dssp CCEEEEESSTTSHHHHH----------HHHHTTT-C----TTEEEEESCCHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHH----------HHHHhcc-C----CCEEEEeCCCHHHHHHHHH
Confidence 68999999988875542 2333332 2 257788 9998888664
No 43
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=20.76 E-value=1.6e+02 Score=18.27 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHH
Q psy14107 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93 (151)
Q Consensus 37 ~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~ 93 (151)
-.+|+|+++++.- +.+-+..+..+. ..+-.+=.++++.+.+.-+.-++...
T Consensus 50 ~~vvlDls~v~~i-----Dssgl~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPFM-----DITGIQTLEEMI-QSFHKRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCCC-----CHHHHHHHHHHH-HHHHTTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCcc-----cHHHHHHHHHHH-HHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 4689999999854 444444444443 23334556899999988777666543
No 44
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.49 E-value=80 Score=18.69 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=31.5
Q ss_pred EEeCCCCCccccccCCHHHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhH
Q psy14107 40 IFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLRE 99 (151)
Q Consensus 40 IiD~~g~s~~~~~~~~~~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~ 99 (151)
-+|+.|.+... ....+-.++.+++-..+..+.||+==-. ..+=+.+..||..
T Consensus 6 ~lDLhG~~~~e-------A~~~l~~fl~~a~~~g~~~v~IIHGkG~-GvLr~~V~~~L~~ 57 (83)
T 2zqe_A 6 EVDLRGLTVAE-------ALLEVDQALEEARALGLSTLRLLHGKGT-GALRQAIREALRR 57 (83)
T ss_dssp EEECTTCCHHH-------HHHHHHHHHHHHHHTTCSEEEEECCSTT-SHHHHHHHHHHHH
T ss_pred EEECCCCCHHH-------HHHHHHHHHHHHHHCCCCEEEEEECCCc-hHHHHHHHHHHhc
Confidence 47999987653 3455666666676666777888864211 2333444555543
No 45
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=20.32 E-value=78 Score=21.71 Aligned_cols=49 Identities=8% Similarity=-0.043 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcccceeeceEEEEeCChHHHHHHHHHHHhhhHHhcCceEEccCChhHHhcc
Q psy14107 57 TFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKY 118 (151)
Q Consensus 57 ~~~k~~~~~l~~~yP~rl~~i~iin~P~~~~~~~~~~k~fl~~~~~~ki~~~~~~~~~L~~~ 118 (151)
..+.++...++. =+.++++|. |.+-..|+++..++.+.+. ++.+++.+.
T Consensus 119 GTL~E~~~al~~-----~kpV~~l~~-------~~~~~gfi~~~~~~~i~~~-~~~~e~~~~ 167 (176)
T 2iz6_A 119 GTAAEVALALKA-----KKPVVLLGT-------QPEAEKFFTSLDAGLVHVA-ADVAGAIAA 167 (176)
T ss_dssp HHHHHHHHHHHT-----TCCEEEESC-------CHHHHHHHHHHCTTTEEEE-SSHHHHHHH
T ss_pred cHHHHHHHHHHh-----CCcEEEEcC-------cccccccCChhhcCeEEEc-CCHHHHHHH
Confidence 345556566543 345788887 4466789999999999998 467765543
Done!