RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14107
(151 letters)
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 123 bits (310), Expect = 1e-36
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 5 WKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVD 64
K + +E+ + V LE + E QV G VI D+ GLSL P+ K+I+
Sbjct: 32 DLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILK 90
Query: 65 WLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECL 124
LQD+ P R+K ++++N P F +++ + KP L EK R +I F +D++ L KY++ E L
Sbjct: 91 ILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQL 150
Query: 125 PEHYKGT 131
PE Y GT
Sbjct: 151 PEEYGGT 157
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 122 bits (309), Expect = 1e-36
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 4 NWKHKKVCLDEVFKGAVLFLEAAMME-PSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRI 62
KK L+E+ + VL LE A++ P Q+ G VI DM GLSL ++ +F K+I
Sbjct: 23 RHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGLSLSNMDKWPISFLKKI 82
Query: 63 VDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHS-TDRDSLHKYLNP 121
+ LQD+ P R+ I +VN P IFN+++ L KP L K R +I FH ++ + L KY+ P
Sbjct: 83 LKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREKIHFHKNSNLEELLKYIPP 142
Query: 122 ECLPEHYKGT 131
E LP+ Y GT
Sbjct: 143 EQLPKEYGGT 152
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 90.4 bits (225), Expect = 6e-24
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 4 NWKHKKVCLDEVFKGAVLFLEAAM--MEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKR 61
+ K V L+E+ + V LE + + + + G VIFD+ GLS+ + ++
Sbjct: 29 RFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSM---SNPDLSVLRK 85
Query: 62 IVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD-RDSLHKYLN 120
I+ LQD P R+ ++++N P F +++ + KP L EK R +I F D ++ L +Y++
Sbjct: 86 ILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYID 145
Query: 121 PECLPEHYKGTLD 133
E LPE GTLD
Sbjct: 146 KEQLPEELGGTLD 158
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 40.0 bits (94), Expect = 7e-05
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 28 MEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFN 87
+ + G V+ D G++ + + ++ K++ L + P +K +++V+ P+ F
Sbjct: 42 LSEELKPKGFVVVIDHTGVTRNK---PSWSWLKKLYKLLPRAFPKNLKAVYIVH-PSTFL 97
Query: 88 MVF--ALFKPLLREKLRNRIFFHSTDRDSLHKYLNPECLPEHYKGTLD 133
F L + +KL + + + L +Y++P LP G L
Sbjct: 98 KKFLKTLGRLFSSKKLFKKKVIYVSSLSELSEYIDPTQLPLELGGVLS 145
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family.
This family represents a subfamily of a C-N
bond-cleaving hydrolases (see pfam00795). Members occur
as part of a cluster of genes in a probable biosynthetic
cluster that contains a radical SAM protein, an
N-acetyltransferase, a flavoprotein, several proteins of
unknown function, and usually a glycosyltransferase.
Members are closely related to a characterized aliphatic
nitrilase from Rhodopseudomonas rhodochrous J1, for
which an active site Cys was found at position 165
[Unknown function, Enzymes of unknown specificity].
Length = 301
Score = 31.6 bits (72), Expect = 0.11
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 37 AQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQ-DSIPLRV 74
Q+IFD DG + + + TPT+ +R+V W Q D L+V
Sbjct: 109 TQLIFDADGELVLKRRKITPTYHERMV-WGQGDGAGLKV 146
>gnl|CDD|182729 PRK10786, ribD, bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase; Provisional.
Length = 367
Score = 29.0 bits (65), Expect = 1.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 11 CLDEVFKGAVLFLEAAMMEPSSQVAG------AQVIFDMD-GLSLQQAWQFTPTFAKRI 62
C D + V + AAM +P+ QVAG Q D+ GL + +A F KR+
Sbjct: 84 CCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRM 142
>gnl|CDD|178419 PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.
Length = 294
Score = 28.2 bits (63), Expect = 1.5
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 31/92 (33%)
Query: 18 GAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGI 77
G V+ L+AA+ P V G +I +I LR G+
Sbjct: 112 GGVVGLQAAVDAPEL-VRGVMLI----------------------------NISLR--GL 140
Query: 78 HVVNQPTIFNMVFALFKPLLREKLRNRIFFHS 109
H+ QP + F+ LLRE + FF S
Sbjct: 141 HIKKQPWLGRPFIKAFQNLLRETAVGKAFFKS 172
>gnl|CDD|168300 PRK05934, PRK05934, type III secretion system protein; Validated.
Length = 341
Score = 28.3 bits (63), Expect = 1.7
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 46 LSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRI 105
LSL +A +P+ I D+L S+P K H+ T+ + + L+ PL + N +
Sbjct: 111 LSLPKAETLSPSLLHSITDYLTSSVPGLTKE-HI----TLSDNLGNLYSPLFEQS--NSL 163
Query: 106 FFHSTDRDSLHKYLNPE-----CLPEHYKGTLDVSL 136
S +R L K E LP + TL +++
Sbjct: 164 LTTSLER-YLGKIFPKEHFALNYLPVADEPTLQLTV 198
>gnl|CDD|236770 PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; Provisional.
Length = 222
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 27 MMEPSSQVAGAQVIFDMDGL 46
M P +A IFDMDGL
Sbjct: 1 MSTPRQILA---AIFDMDGL 17
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 27.2 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 46 LSLQQAWQF--TPTFAKRIVDWLQDSIPLRVKGIHVV 80
L L +AW F P FA ++ +WL+ LR K + V+
Sbjct: 639 LILDEAWLFLDDPVFAAQLREWLKT---LRKKNVSVI 672
>gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial protein Rv2277c and
similar proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in uncharacterized bacterial protein Rv2277c and
similar proteins. Members in this subfamily are
bacterial homologous of mammalian GDE4, a transmembrane
protein whose cellular function has not yet been
elucidated.
Length = 263
Score = 26.9 bits (60), Expect = 4.8
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 29/92 (31%)
Query: 48 LQQAWQFTPTFAKRIVDWLQDSIPLRVKGIH------VVNQ--PTIF----------NMV 89
L + F P P R K + V+ T F
Sbjct: 73 LNAGYNFKPE----------GGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPADPQA 122
Query: 90 FALFKPLLREKLRNRIFFHSTDRDSLHKYLNP 121
A+ + L RE +R+ +ST+ D L P
Sbjct: 123 KAVARVLERENAWSRVRIYSTNADYQ-DALAP 153
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 26.6 bits (59), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 71 PLRVKGIHVVNQPT 84
P+RV+G+H NQPT
Sbjct: 215 PMRVRGLHAQNQPT 228
>gnl|CDD|226634 COG4160, ArtM, ABC-type arginine/histidine transport system,
permease component [Amino acid transport and
metabolism].
Length = 228
Score = 26.4 bits (59), Expect = 6.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 64 DWLQDSIPLRVKGIHVVNQPTIFNMVFALF 93
DW + +P + G+ I ++V
Sbjct: 4 DWFLEYLPRLLSGLATTLWLLIISLVIGFV 33
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,871,463
Number of extensions: 707956
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 18
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.6 bits)