RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14107
(151 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 121 bits (304), Expect = 3e-36
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 4 NWKHKKVCLDEVFKGAVLFLEAAMMEPSSQVAGAQVIFDMDGLSLQQAWQFTPTFAKRIV 63
+W K +VF+ +++ E + E +Q G + IFD++G A+Q TP+ AK+I
Sbjct: 31 HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 90
Query: 64 DWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSLHKYLNPEC 123
L DS PL+V+GIH++N+P IF+ VF++ KP L EK++ RI H + P+
Sbjct: 91 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDI 150
Query: 124 LPEHYKGTLD 133
LP Y G
Sbjct: 151 LPLEYGGEEF 160
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 98.2 bits (244), Expect = 5e-27
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 1 MDQNWKHKKVCLDEVFKGAVLFLEAAMM-------EPSSQVAGAQVIFDMDGLSLQQAWQ 53
+D ++ + + E + + +V +I+D +GL L+ W+
Sbjct: 31 LDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWK 90
Query: 54 FTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHST-DR 112
+ +++ P +K + VV P +F + + L KP L E R +I +
Sbjct: 91 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWK 150
Query: 113 DSLHKYLNPECLPEHYKGTLD 133
+ L K+++P+ +P Y GT+
Sbjct: 151 EVLLKHISPDQVPVEYGGTMT 171
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 88.3 bits (218), Expect = 3e-23
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 1 MDQNWKHKKVCLDEVFKGAVLFLEAAMM--------EPSSQVAGAQVIFDMDGLSLQQAW 52
++ + +K + + K V E+ + V + I D+ G+S+ A+
Sbjct: 33 VNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAY 92
Query: 53 QFTPTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTD- 111
+ + Q+ P R+ +++N P F+ F LFKP L ++IF +
Sbjct: 93 SVMS-YVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSY 151
Query: 112 RDSLHKYLNPECLPEHYKGTLDV 134
+ L K + E LP + G +V
Sbjct: 152 QKELLKQIPAENLPVKFGGKSEV 174
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 27.9 bits (62), Expect = 0.28
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 31 SSQVAGAQVIFDMDGLSL---QQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVVNQ 82
+ +V A VI+ G ++ P IV + L+ G+H+ Q
Sbjct: 12 TGKVDKA-VIYSRAGDAVWATSGGLSLQPNEIGEIVQGFDNPAGLQSNGLHIQGQ 65
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 198
Score = 25.4 bits (55), Expect = 2.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 99 EKLRNRIFFHSTDRDSLHKYLNPECLPEHYKG 130
+K+++ + DR ++ + L P LP YK
Sbjct: 160 DKIQSELEAAGKDRHAIQEALMPYELPAKYKA 191
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV)
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 24.9 bits (53), Expect = 4.1
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 39 VIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVV 80
++ DMDG L A + L+ +GI V
Sbjct: 5 IVTDMDGTFLNDAKTYNQPRFMAQYQELKK------RGIKFV 40
>d1mgta2 c.55.7.1 (A:1-88) O6-alkylguanine-DNA alkyltransferase
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 88
Score = 23.3 bits (50), Expect = 7.6
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 77 IHVVNQPTIFNMVFALFKPLLREKLRNRIFF 107
I V+ + + FA + L +++ +
Sbjct: 16 IGVIFSGRVQGIAFAFDRGTLMKRIHDLAEH 46
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 24.5 bits (52), Expect = 7.8
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 92 LFKPL-LRE-KLRNRIFFHSTDRDSLHKYLNPECLPEHY 128
L P + + +L +R+ R + Y+ HY
Sbjct: 7 LMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHY 45
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and
3 {Salmonella typhimurium [TaxId: 90371]}
Length = 102
Score = 23.3 bits (50), Expect = 7.9
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 56 PTFAKRIVDWLQDSIPLRVKGIHVVNQPTIFNMVFALFKPLLREKLRNRIFFHSTDRDSL 115
P A+ + + L+ +P + A + LR +++ + R
Sbjct: 20 PVLARLLREKLESLLPQHLGQ-------------VARYAGQLRARVKKQFATMGERRRFW 66
Query: 116 HKYLNPECLPEHYKG 130
K+ + L +
Sbjct: 67 EKFFVNDRLAQSLAN 81
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 24.1 bits (51), Expect = 9.3
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 39 VIFDMDGLSLQQAWQFTPTFAKRIVDWLQDSIPLRVKGIHVV 80
+ FD+DG + P+ ++ KG+ +
Sbjct: 4 LFFDIDGTLVSFETHRIPSSTIEALEAAHA------KGLKIF 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 582,202
Number of extensions: 24954
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 20
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.3 bits)