BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1411
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 177/283 (62%), Gaps = 14/283 (4%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
MDAIKKKMQ +K++K++A+D+AD E K A R+ ++E +L + +K L
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 51 DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
+A+KD L NR++Q+ EE+L++++ER TA KL EA +AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
DE+ R KV+E+R+Q+DEE+M+ QLKEA+ +AEDAD K +EV+RKL +E +LE AE
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
+R + + K ELEEE+K V N+LKSLE EK +Q+ ++Y+ +IK L+ KLK
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
++V KL+K +D LEDEL K +YK++++E+D ++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 176 bits (447), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 178/283 (62%), Gaps = 14/283 (4%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
MDAIKKKMQ +K++K++A+D+A+ E K A R+ ++E +L + +K L
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 51 DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
+A+KD L NR++Q++EE+L++++ER TA KL EA +AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
DE+ R KV+E+R+Q+DEE+M+ QLKEA+ +AEDAD K +EV+RKL +E +LE AE
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
+R + + K ELEEE+K V N+LKSLE EK +Q+ ++Y+ +IK L+ KLK
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
++V KL+K +D LEDEL K +YK++++E+D ++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 14/271 (5%)
Query: 8 MQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL----------DQAVKD- 56
MQ +K++K++A+D+A+ E K A R+ ++E +L + +K L +A+KD
Sbjct: 1 MQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDA 60
Query: 57 ---LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
L NR++Q++EE+L++++ER TA KL EA +AADE+ R
Sbjct: 61 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 120
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
KV+E+R+Q+DEE+M+ QLKEA+ +AEDAD K +EV+RKL +E +LE AE+R + +
Sbjct: 121 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 180
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVK 233
K ELEEELK V N+LKSLE EK +Q+ ++Y+ +IK L+ KLK ++V
Sbjct: 181 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 240
Query: 234 KLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264
KL+K +D LEDEL K +YK++++E+D
Sbjct: 241 KLEKSIDDLEDELYAQKLKYKAISEELDHAL 271
>pdb|2B9C|A Chain A, Structure Of Tropomyosin's Mid-Region: Bending And Binding
Sites For Actin
pdb|2B9C|B Chain B, Structure Of Tropomyosin's Mid-Region: Bending And Binding
Sites For Actin
Length = 147
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 92/120 (76%)
Query: 75 NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134
NR++Q++EE+L++++ER TA KL EA +AADE+ R KV+E+R+Q+DEE+M+ QL
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 61
Query: 135 KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLE 194
KEA+ +AEDAD K +EV+RKL +E +LE AE+R + + K ELEEELK V N+LKSLE
Sbjct: 62 KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121
>pdb|4A7F|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 136
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 100/136 (73%)
Query: 84 DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED 143
+L++++ER TA KL EA +AADE+ R KV+E+R+Q+DEE+M+ QLKEA+ +AED
Sbjct: 1 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 60
Query: 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQR 203
AD K +EV+RKL +E +LE AE+R + + K ELEEELK V N+LKSLE EK +Q+
Sbjct: 61 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQK 120
Query: 204 VEEYKRQIKQLAVKLK 219
++Y+ +IK L+ KLK
Sbjct: 121 EDKYEEEIKVLSDKLK 136
>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
Length = 134
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXX 221
LE AE+R + + K ELEEELK V N+LKSLE EK +Q+ ++Y+ +IK L+ KLK
Sbjct: 26 LERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 85
Query: 222 XXXXXXXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
++V KL+K +D LEDEL K +YK++++E+D ++
Sbjct: 86 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 133
>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFS|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
Length = 155
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
RM QL ++++E LL+++ + +EV+R ++ LE AE+R + + K ELEEELK
Sbjct: 1 RMKQLEDKVEE--LLSKNYHLE-NEVAR----LKKLLERAEERAELSEGKSAELEEELKT 53
Query: 186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVKKLQKEVDRLEDE 245
V N+LKSLE EK +Q+ ++Y+ +IK L+ KLK ++V KL+K +D LEDE
Sbjct: 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113
Query: 246 LGLNKDRYKSLADEM 260
L K +YK++++EM
Sbjct: 114 LYAQKLKYKAISEEM 128
>pdb|3U1C|A Chain A, Anti-Parallel Dimer Of N-Terminal 98-Aa Fragment Of Smooth
Muscle Tropomyosin Alpha
pdb|3U1C|B Chain B, Anti-Parallel Dimer Of N-Terminal 98-Aa Fragment Of Smooth
Muscle Tropomyosin Alpha
Length = 101
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL-------DQA 53
MDAIKKKMQ +K++K++A+D+A+ E K A R+ ++E D+ +K L DQ
Sbjct: 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63
Query: 54 VKDLXXX-------XXXXXXXXXXXXXXNRKVQMIEED 84
+++L NR++Q++EE+
Sbjct: 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101
>pdb|3U1A|A Chain A, N-Terminal 81-Aa Fragment Of Smooth Muscle Tropomyosin
Alpha
pdb|3U1A|B Chain B, N-Terminal 81-Aa Fragment Of Smooth Muscle Tropomyosin
Alpha
pdb|3U1A|C Chain C, N-Terminal 81-Aa Fragment Of Smooth Muscle Tropomyosin
Alpha
pdb|3U1A|D Chain D, N-Terminal 81-Aa Fragment Of Smooth Muscle Tropomyosin
Alpha
Length = 84
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL 50
MDAIKKKMQ +K++K++A+D+A+ E K A R+ ++E D+ +K L
Sbjct: 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL 50
MDAIKKKMQ +K++K++A+D+A+ E K A R+ ++E +L +K L
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50
>pdb|3U59|A Chain A, N-Terminal 98-Aa Fragment Of Smooth Muscle Tropomyosin
Beta
pdb|3U59|B Chain B, N-Terminal 98-Aa Fragment Of Smooth Muscle Tropomyosin
Beta
pdb|3U59|C Chain C, N-Terminal 98-Aa Fragment Of Smooth Muscle Tropomyosin
Beta
pdb|3U59|D Chain D, N-Terminal 98-Aa Fragment Of Smooth Muscle Tropomyosin
Beta
Length = 101
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL 50
M+AIKKKMQ +K++K++A+D+A+ E K A R ++E + +K L
Sbjct: 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53
>pdb|3MUD|C Chain C, Structure Of The Tropomyosin Overlap Complex From
Chicken Smooth Muscle
pdb|3MUD|D Chain D, Structure Of The Tropomyosin Overlap Complex From
Chicken Smooth Muscle
Length = 75
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCE 26
MDAIKKKMQ +K++K++A+D+A+ E
Sbjct: 4 MDAIKKKMQMLKLDKENALDRAEQAE 29
>pdb|2Z5H|I Chain I, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5I|I Chain I, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|J Chain J, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
Length = 40
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQ 28
MDAIKKKMQ +K++K++A+D+A+ E +
Sbjct: 5 MDAIKKKMQMLKLDKENALDRAEQLENE 32
>pdb|2HN1|A Chain A, Crystal Structure Of A Cora Soluble Domain From A.
Fulgidus In Complex With Co2+
Length = 266
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 108 EANRMCKVLE-NRSQQDEER----MDQLTNQLKEA---RLLAEDA------DAKSDEVSR 153
E +++ VL+ N EER +D + ++LK R LA D DA D
Sbjct: 128 EIDQLSLVLKKNLVATFEEREYWILDSIRSRLKSGGRMRKLAGDYLAYTILDAVVDSYFE 187
Query: 154 KLAFVEDELEVAEDRVKSGDA----KIMELEEELKVVGNSLKSL--------EVSEEKAN 201
L + DE+EV ED V SGD+ KI L+ E+ N++ L V E
Sbjct: 188 ALLKISDEIEVLEDEVVSGDSTLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELIG 247
Query: 202 QRVEEYKRQIKQLAVKL 218
+ V+ Y R + AV+L
Sbjct: 248 EEVKVYYRDVYDHAVRL 264
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 30.8 bits (68), Expect = 0.76, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 137 ARLLAEDADAKSDEVSRKLAFVEDELEVAE-DRVKSGD----AKIMELEEELKVVGNSLK 191
A + ED + D++ + L+FV+DE + + +VK + A +E E ++ + NSL
Sbjct: 505 AERIGEDFISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLF 564
Query: 192 SLEVSEEKANQRVEEYKRQI 211
++V +R+ EYKRQ+
Sbjct: 565 DIQV------KRIHEYKRQL 578
>pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
pdb|1KQL|B Chain B, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
Length = 56
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 232 VKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
V +L+K VD LEDEL K +YK++++E+D ++
Sbjct: 18 VARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMTS 55
>pdb|2Z5H|A Chain A, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|B Chain B, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|C Chain C, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|D Chain D, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|E Chain E, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|F Chain F, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|G Chain G, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5H|H Chain H, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin Complexed With A Fragment Of Tnt
pdb|2Z5I|A Chain A, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|B Chain B, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|C Chain C, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|D Chain D, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|E Chain E, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|F Chain F, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|G Chain G, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
pdb|2Z5I|H Chain H, Crystal Structure Of The Head-To-Tail Junction Of
Tropomyosin
Length = 52
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 232 VKKLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264
V +L+K VD LEDEL K +YK++++E+D
Sbjct: 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.122 0.303
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,616,760
Number of Sequences: 62578
Number of extensions: 182181
Number of successful extensions: 767
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 145
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.3 bits)