Query psy1411
Match_columns 270
No_of_seqs 211 out of 1011
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:47:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00261 Tropomyosin: Tropomyo 99.9 5.2E-23 1.1E-27 168.4 29.4 232 39-270 6-237 (237)
2 KOG1003|consensus 99.9 2.8E-19 6E-24 135.5 26.6 203 68-270 3-205 (205)
3 TIGR02168 SMC_prok_B chromosom 99.5 8.8E-10 1.9E-14 110.2 39.9 261 7-267 671-938 (1179)
4 PF00261 Tropomyosin: Tropomyo 99.5 4.3E-10 9.3E-15 92.3 29.3 194 6-199 1-194 (237)
5 TIGR02168 SMC_prok_B chromosom 99.4 2.9E-09 6.2E-14 106.6 37.9 259 4-262 675-940 (1179)
6 TIGR02169 SMC_prok_A chromosom 99.3 5.1E-08 1.1E-12 97.7 39.5 108 6-113 674-781 (1164)
7 TIGR02169 SMC_prok_A chromosom 99.3 5.7E-08 1.2E-12 97.3 39.4 99 154-252 393-491 (1164)
8 COG1196 Smc Chromosome segrega 99.3 1.6E-07 3.4E-12 93.7 39.6 203 6-215 667-869 (1163)
9 PF12718 Tropomyosin_1: Tropom 99.3 1.5E-09 3.3E-14 81.5 19.4 141 7-179 1-141 (143)
10 KOG1003|consensus 99.2 2.9E-08 6.2E-13 76.0 24.2 191 1-191 6-203 (205)
11 COG1196 Smc Chromosome segrega 99.2 7.9E-07 1.7E-11 88.8 39.9 264 4-267 672-935 (1163)
12 KOG0161|consensus 98.9 4.5E-05 9.6E-10 77.7 38.3 6 157-162 1045-1050(1930)
13 PF10174 Cast: RIM-binding pro 98.9 4E-05 8.6E-10 72.3 35.7 115 7-121 309-423 (775)
14 PF12718 Tropomyosin_1: Tropom 98.9 7.7E-07 1.7E-11 66.9 19.4 137 1-137 2-141 (143)
15 KOG0161|consensus 98.9 6.3E-05 1.4E-09 76.7 38.3 116 100-215 960-1075(1930)
16 PF10174 Cast: RIM-binding pro 98.8 0.00014 3E-09 68.7 36.7 43 7-49 122-164 (775)
17 TIGR00606 rad50 rad50. This fa 98.8 0.00026 5.5E-09 72.0 38.4 47 168-214 978-1024(1311)
18 KOG0250|consensus 98.7 0.00041 9E-09 66.4 35.5 188 63-250 275-463 (1074)
19 PF05701 WEMBL: Weak chloropla 98.6 0.00047 1E-08 63.2 37.3 122 139-260 302-423 (522)
20 PF07888 CALCOCO1: Calcium bin 98.6 0.00048 1.1E-08 62.1 38.1 48 7-54 144-191 (546)
21 KOG0996|consensus 98.5 0.0011 2.4E-08 63.9 35.9 59 77-135 406-464 (1293)
22 KOG0977|consensus 98.5 0.00068 1.5E-08 61.1 29.2 248 13-263 99-382 (546)
23 PRK03918 chromosome segregatio 98.4 0.0033 7.1E-08 61.7 37.6 10 241-250 463-472 (880)
24 PF00038 Filament: Intermediat 98.4 0.0012 2.6E-08 56.7 39.3 129 6-134 4-140 (312)
25 KOG0971|consensus 98.4 0.0025 5.4E-08 60.0 29.5 55 199-253 494-548 (1243)
26 KOG0971|consensus 98.4 0.0025 5.5E-08 59.9 34.3 74 112-185 369-442 (1243)
27 PRK03918 chromosome segregatio 98.4 0.0035 7.6E-08 61.5 38.0 11 248-258 463-473 (880)
28 PF15070 GOLGA2L5: Putative go 98.3 0.0025 5.5E-08 59.2 35.3 208 3-210 33-259 (617)
29 PF05701 WEMBL: Weak chloropla 98.3 0.0024 5.2E-08 58.6 38.1 71 155-225 283-353 (522)
30 KOG0994|consensus 98.3 0.0043 9.3E-08 59.9 32.2 120 72-191 1552-1671(1758)
31 KOG0996|consensus 98.3 0.0048 1E-07 59.7 35.0 22 117-138 439-460 (1293)
32 PHA02562 46 endonuclease subun 98.3 0.0037 8E-08 58.1 35.6 62 53-114 218-279 (562)
33 PRK11637 AmiB activator; Provi 98.3 0.0029 6.4E-08 56.8 30.5 79 27-105 47-125 (428)
34 PF00038 Filament: Intermediat 98.3 0.0022 4.7E-08 55.1 32.0 45 220-264 259-303 (312)
35 KOG0964|consensus 98.3 0.0046 1E-07 58.7 32.9 64 200-263 402-465 (1200)
36 KOG0250|consensus 98.2 0.0056 1.2E-07 59.0 35.8 8 136-143 341-348 (1074)
37 KOG0933|consensus 98.2 0.0056 1.2E-07 58.4 33.0 181 73-256 738-918 (1174)
38 PF15070 GOLGA2L5: Putative go 98.1 0.0073 1.6E-07 56.2 29.4 17 152-168 121-137 (617)
39 PF01576 Myosin_tail_1: Myosin 98.1 7.1E-07 1.5E-11 86.0 0.0 175 22-196 182-371 (859)
40 PF12128 DUF3584: Protein of u 98.1 0.019 4.2E-07 58.1 36.8 52 4-55 605-656 (1201)
41 COG1579 Zn-ribbon protein, pos 98.0 0.0046 1E-07 50.2 21.7 69 66-134 14-82 (239)
42 PF09726 Macoilin: Transmembra 98.0 0.016 3.4E-07 54.9 29.5 70 11-80 423-499 (697)
43 PRK04778 septation ring format 98.0 0.015 3.2E-07 54.2 29.9 14 4-17 254-267 (569)
44 COG1579 Zn-ribbon protein, pos 98.0 0.006 1.3E-07 49.6 22.3 58 112-169 90-147 (239)
45 KOG4674|consensus 97.9 0.035 7.6E-07 56.8 36.4 194 4-197 57-268 (1822)
46 PF09726 Macoilin: Transmembra 97.9 0.023 4.9E-07 53.8 31.1 28 156-183 548-575 (697)
47 PRK11637 AmiB activator; Provi 97.9 0.016 3.5E-07 52.0 31.2 29 211-239 221-249 (428)
48 KOG0964|consensus 97.9 0.024 5.3E-07 54.1 33.5 43 95-137 326-368 (1200)
49 KOG0994|consensus 97.9 0.028 6.1E-07 54.6 30.0 82 76-157 1591-1672(1758)
50 PF01576 Myosin_tail_1: Myosin 97.9 3.1E-06 6.7E-11 81.6 0.0 22 150-171 289-310 (859)
51 KOG0977|consensus 97.8 0.023 4.9E-07 51.6 31.9 139 5-143 41-194 (546)
52 PRK09039 hypothetical protein; 97.8 0.014 3.1E-07 50.6 22.0 16 78-93 76-91 (343)
53 KOG0933|consensus 97.7 0.047 1E-06 52.4 33.6 18 14-31 685-702 (1174)
54 PRK04778 septation ring format 97.7 0.048 1E-06 50.9 35.2 32 3-34 116-147 (569)
55 COG4372 Uncharacterized protei 97.7 0.028 6.1E-07 48.2 30.8 45 44-88 84-128 (499)
56 KOG4643|consensus 97.6 0.069 1.5E-06 51.3 34.4 81 1-81 257-341 (1195)
57 COG1340 Uncharacterized archae 97.6 0.029 6.2E-07 46.8 34.1 88 156-243 161-248 (294)
58 TIGR02680 conserved hypothetic 97.5 0.15 3.2E-06 52.4 32.5 32 7-38 743-774 (1353)
59 PF12128 DUF3584: Protein of u 97.4 0.18 3.9E-06 51.3 37.6 64 204-267 471-534 (1201)
60 KOG0018|consensus 97.4 0.14 3.1E-06 49.6 28.5 47 219-265 852-898 (1141)
61 PF05667 DUF812: Protein of un 97.4 0.11 2.4E-06 48.3 26.4 14 118-131 408-421 (594)
62 KOG4674|consensus 97.4 0.24 5.1E-06 51.1 37.8 228 8-235 89-324 (1822)
63 PRK04863 mukB cell division pr 97.4 0.24 5.1E-06 51.1 34.4 101 3-104 318-418 (1486)
64 COG4372 Uncharacterized protei 97.3 0.089 1.9E-06 45.3 31.0 44 44-87 112-155 (499)
65 KOG0018|consensus 97.3 0.19 4.1E-06 48.8 28.5 92 154-245 382-473 (1141)
66 COG1340 Uncharacterized archae 97.2 0.091 2E-06 43.9 37.0 48 182-229 166-213 (294)
67 PF14915 CCDC144C: CCDC144C pr 97.2 0.095 2.1E-06 43.6 34.9 53 55-107 56-108 (305)
68 PRK11281 hypothetical protein; 97.1 0.38 8.2E-06 48.2 27.8 23 207-229 297-319 (1113)
69 PF10473 CENP-F_leu_zip: Leuci 97.1 0.071 1.5E-06 39.7 19.4 41 7-47 11-51 (140)
70 PF05911 DUF869: Plant protein 97.0 0.33 7.1E-06 46.5 24.9 119 69-187 596-714 (769)
71 KOG0980|consensus 97.0 0.34 7.3E-06 46.2 29.0 62 67-128 422-483 (980)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.0 0.086 1.9E-06 39.1 18.9 113 18-133 8-120 (132)
73 KOG4673|consensus 96.9 0.33 7.1E-06 45.0 32.7 35 149-183 601-635 (961)
74 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.9 0.097 2.1E-06 38.9 18.4 70 112-184 60-129 (132)
75 PF05010 TACC: Transforming ac 96.9 0.14 3.1E-06 40.8 29.3 137 126-268 70-206 (207)
76 PF14662 CCDC155: Coiled-coil 96.9 0.13 2.8E-06 40.1 25.4 98 114-211 91-188 (193)
77 COG4942 Membrane-bound metallo 96.9 0.27 5.8E-06 43.4 29.1 60 44-103 41-100 (420)
78 PF06160 EzrA: Septation ring 96.8 0.43 9.3E-06 44.5 30.3 79 169-247 346-424 (560)
79 PF05557 MAD: Mitotic checkpoi 96.8 0.031 6.7E-07 53.6 13.3 37 230-266 606-642 (722)
80 KOG4643|consensus 96.8 0.59 1.3E-05 45.3 31.9 49 147-195 395-450 (1195)
81 KOG0976|consensus 96.8 0.52 1.1E-05 44.6 36.2 36 230-265 365-400 (1265)
82 TIGR02680 conserved hypothetic 96.7 0.92 2E-05 46.9 33.2 31 4-34 747-777 (1353)
83 PF10473 CENP-F_leu_zip: Leuci 96.7 0.17 3.7E-06 37.7 18.5 18 72-89 20-37 (140)
84 KOG4673|consensus 96.6 0.57 1.2E-05 43.5 34.2 98 159-259 536-634 (961)
85 KOG0612|consensus 96.6 0.83 1.8E-05 45.3 32.0 10 207-216 726-735 (1317)
86 PF06008 Laminin_I: Laminin Do 96.6 0.34 7.3E-06 40.5 31.8 13 77-89 88-100 (264)
87 PF14915 CCDC144C: CCDC144C pr 96.6 0.35 7.5E-06 40.4 36.4 227 36-265 58-292 (305)
88 PF14662 CCDC155: Coiled-coil 96.5 0.27 5.8E-06 38.4 26.2 95 144-238 93-187 (193)
89 PF15619 Lebercilin: Ciliary p 96.5 0.32 7E-06 38.6 24.2 24 198-221 167-190 (194)
90 PF13870 DUF4201: Domain of un 96.4 0.33 7E-06 38.0 21.2 168 2-176 2-175 (177)
91 TIGR00634 recN DNA repair prot 96.3 0.9 2E-05 42.4 27.5 104 142-249 269-372 (563)
92 TIGR01005 eps_transp_fam exopo 96.3 1.2 2.6E-05 43.2 21.5 43 126-168 289-331 (754)
93 KOG0999|consensus 96.3 0.84 1.8E-05 41.4 32.2 42 90-131 93-134 (772)
94 KOG0976|consensus 96.2 1.1 2.4E-05 42.5 33.6 39 69-107 270-308 (1265)
95 KOG0946|consensus 96.1 1.3 2.8E-05 42.1 24.8 48 46-93 669-716 (970)
96 PRK11281 hypothetical protein; 96.1 1.8 4E-05 43.5 28.7 10 4-13 41-50 (1113)
97 KOG0980|consensus 96.0 1.5 3.4E-05 42.0 32.6 97 100-196 420-516 (980)
98 PF09728 Taxilin: Myosin-like 96.0 0.9 1.9E-05 38.9 37.6 69 189-257 203-271 (309)
99 PF05622 HOOK: HOOK protein; 95.8 0.0023 5E-08 61.1 0.0 61 39-99 361-421 (713)
100 KOG0249|consensus 95.7 1.9 4.1E-05 40.5 17.7 90 101-195 95-184 (916)
101 PF05557 MAD: Mitotic checkpoi 95.6 0.0033 7.2E-08 60.2 0.0 19 247-265 402-420 (722)
102 PF00769 ERM: Ezrin/radixin/mo 95.5 1.1 2.5E-05 37.0 16.9 81 56-136 34-114 (246)
103 PF05622 HOOK: HOOK protein; 95.4 0.004 8.6E-08 59.6 0.0 74 162-239 327-400 (713)
104 KOG0946|consensus 95.4 2.5 5.5E-05 40.3 28.1 19 154-172 807-825 (970)
105 KOG0612|consensus 95.4 3.4 7.4E-05 41.2 34.5 20 170-189 626-645 (1317)
106 smart00787 Spc7 Spc7 kinetocho 95.3 1.7 3.7E-05 37.3 19.3 107 35-141 152-262 (312)
107 PF08614 ATG16: Autophagy prot 95.2 0.55 1.2E-05 37.3 11.7 62 89-150 115-176 (194)
108 TIGR03007 pepcterm_ChnLen poly 95.2 2.6 5.6E-05 38.7 21.7 28 76-103 204-231 (498)
109 TIGR03007 pepcterm_ChnLen poly 95.0 2.8 6E-05 38.5 22.9 23 146-168 268-290 (498)
110 KOG0995|consensus 94.9 3 6.5E-05 38.2 36.8 30 166-195 431-460 (581)
111 PF04849 HAP1_N: HAP1 N-termin 94.9 2.1 4.5E-05 36.3 26.8 24 241-264 273-296 (306)
112 PF00769 ERM: Ezrin/radixin/mo 94.8 1.9 4.2E-05 35.6 17.2 81 156-236 36-116 (246)
113 PF09789 DUF2353: Uncharacteri 94.8 2.3 4.9E-05 36.4 22.6 37 3-39 13-49 (319)
114 PF08614 ATG16: Autophagy prot 94.7 0.79 1.7E-05 36.4 11.3 99 142-247 84-182 (194)
115 KOG0963|consensus 94.7 3.5 7.6E-05 38.1 33.4 79 115-193 193-275 (629)
116 PF09789 DUF2353: Uncharacteri 94.6 2.6 5.6E-05 36.1 25.8 93 48-140 9-115 (319)
117 TIGR01843 type_I_hlyD type I s 94.5 3.4 7.3E-05 36.8 22.8 9 8-16 83-91 (423)
118 PF04012 PspA_IM30: PspA/IM30 94.5 2.2 4.7E-05 34.6 21.2 48 20-67 23-70 (221)
119 PF05911 DUF869: Plant protein 94.4 5.2 0.00011 38.6 27.9 77 115-191 593-669 (769)
120 smart00787 Spc7 Spc7 kinetocho 94.2 3.2 7E-05 35.6 20.5 16 71-86 174-189 (312)
121 PF05384 DegS: Sensor protein 94.0 2.2 4.7E-05 32.7 20.8 61 112-172 92-152 (159)
122 KOG0963|consensus 93.9 5.3 0.00012 37.0 31.3 45 75-119 181-225 (629)
123 PF10498 IFT57: Intra-flagella 93.8 4.2 9.1E-05 35.6 17.0 124 128-254 216-352 (359)
124 PRK10869 recombination and rep 93.8 5.9 0.00013 37.0 28.2 117 146-266 268-385 (553)
125 PF06008 Laminin_I: Laminin Do 93.7 3.6 7.8E-05 34.4 33.5 72 45-116 42-113 (264)
126 PF13851 GAS: Growth-arrest sp 93.6 3.1 6.6E-05 33.3 22.9 41 151-191 91-131 (201)
127 PF05384 DegS: Sensor protein 93.6 2.6 5.6E-05 32.3 20.1 125 141-265 22-147 (159)
128 PF12795 MscS_porin: Mechanose 93.5 3.6 7.8E-05 33.8 21.9 42 154-195 165-206 (240)
129 KOG0999|consensus 93.5 6 0.00013 36.2 35.1 184 2-192 11-219 (772)
130 KOG1853|consensus 93.4 3.6 7.8E-05 33.6 21.1 140 76-228 27-166 (333)
131 PF04111 APG6: Autophagy prote 93.3 3.9 8.4E-05 35.2 13.5 9 39-47 21-29 (314)
132 KOG0978|consensus 93.1 8.2 0.00018 36.6 35.7 80 158-237 515-594 (698)
133 TIGR03185 DNA_S_dndD DNA sulfu 93.0 8.7 0.00019 36.7 37.0 11 256-266 507-517 (650)
134 PF13870 DUF4201: Domain of un 93.0 3.6 7.7E-05 32.1 21.0 80 64-143 44-123 (177)
135 KOG0978|consensus 92.7 9.2 0.0002 36.3 37.0 120 146-265 496-615 (698)
136 PF10498 IFT57: Intra-flagella 92.7 6.5 0.00014 34.5 16.6 103 86-191 216-318 (359)
137 KOG0804|consensus 92.7 7 0.00015 34.8 16.5 102 140-244 348-449 (493)
138 PF09304 Cortex-I_coil: Cortex 92.7 2.5 5.5E-05 29.7 14.0 61 179-239 14-74 (107)
139 PF06005 DUF904: Protein of un 92.6 1.9 4.1E-05 28.2 9.2 63 114-176 7-69 (72)
140 COG0419 SbcC ATPase involved i 92.4 13 0.00027 37.1 38.4 52 158-209 366-417 (908)
141 PRK10929 putative mechanosensi 92.4 14 0.0003 37.5 32.1 11 3-13 27-37 (1109)
142 PF09304 Cortex-I_coil: Cortex 92.3 2.9 6.3E-05 29.4 14.3 60 75-134 15-74 (107)
143 PF05667 DUF812: Protein of un 92.1 11 0.00023 35.5 35.2 49 24-72 332-380 (594)
144 PF05335 DUF745: Protein of un 92.0 5 0.00011 31.6 20.4 111 24-134 57-167 (188)
145 COG3074 Uncharacterized protei 92.0 2.2 4.7E-05 27.3 8.8 54 122-175 22-75 (79)
146 KOG0979|consensus 91.9 14 0.0003 36.4 23.9 14 156-169 293-306 (1072)
147 PF05483 SCP-1: Synaptonemal c 91.4 13 0.00027 35.1 37.8 107 159-265 253-359 (786)
148 PF10168 Nup88: Nuclear pore c 91.4 14 0.00031 35.6 18.8 10 161-170 647-656 (717)
149 COG3883 Uncharacterized protei 91.4 7.5 0.00016 32.3 27.5 61 24-84 35-95 (265)
150 PF04012 PspA_IM30: PspA/IM30 91.0 7.3 0.00016 31.5 20.9 50 86-135 26-75 (221)
151 PF10481 CENP-F_N: Cenp-F N-te 90.8 8.5 0.00018 31.9 18.3 64 70-133 61-124 (307)
152 PF12795 MscS_porin: Mechanose 90.8 8.2 0.00018 31.7 23.9 24 112-135 107-130 (240)
153 PF10146 zf-C4H2: Zinc finger- 90.6 8.3 0.00018 31.5 13.6 61 206-266 43-103 (230)
154 PF13851 GAS: Growth-arrest sp 90.4 8 0.00017 30.9 23.4 9 44-52 30-38 (201)
155 PF04582 Reo_sigmaC: Reovirus 90.1 0.66 1.4E-05 39.5 5.2 29 156-184 122-150 (326)
156 PF12325 TMF_TATA_bd: TATA ele 90.1 5.8 0.00012 28.8 13.6 22 113-134 77-98 (120)
157 PF14073 Cep57_CLD: Centrosome 90.0 7.7 0.00017 30.2 21.2 37 112-148 58-94 (178)
158 TIGR00634 recN DNA repair prot 90.0 17 0.00037 34.1 26.4 16 177-192 325-340 (563)
159 PRK10246 exonuclease subunit S 89.8 25 0.00053 35.7 37.2 6 10-15 534-539 (1047)
160 PF09738 DUF2051: Double stran 89.8 12 0.00026 32.0 13.9 83 10-92 81-163 (302)
161 PF06818 Fez1: Fez1; InterPro 89.7 9 0.0002 30.5 22.3 91 43-133 12-102 (202)
162 TIGR03185 DNA_S_dndD DNA sulfu 89.6 20 0.00043 34.3 36.1 21 170-190 394-414 (650)
163 PF10481 CENP-F_N: Cenp-F N-te 89.5 11 0.00024 31.3 19.2 73 112-191 61-133 (307)
164 PRK15422 septal ring assembly 89.2 4.7 0.0001 26.6 9.5 39 138-176 38-76 (79)
165 PF12325 TMF_TATA_bd: TATA ele 89.2 6.9 0.00015 28.5 14.4 23 39-61 28-50 (120)
166 PF15456 Uds1: Up-regulated Du 89.2 7.1 0.00015 28.6 11.5 36 7-43 23-58 (124)
167 PF07111 HCR: Alpha helical co 89.0 21 0.00046 33.8 36.3 15 152-166 477-491 (739)
168 PF04582 Reo_sigmaC: Reovirus 88.7 0.9 2E-05 38.8 5.0 90 57-146 44-133 (326)
169 PF10146 zf-C4H2: Zinc finger- 88.6 12 0.00026 30.6 15.4 73 173-245 31-103 (230)
170 COG2433 Uncharacterized conser 88.4 16 0.00034 34.0 12.7 26 151-176 479-504 (652)
171 COG1842 PspA Phage shock prote 88.2 13 0.00027 30.4 23.0 48 21-68 25-72 (225)
172 COG2433 Uncharacterized conser 88.0 21 0.00045 33.3 13.3 35 66-100 426-460 (652)
173 PF04849 HAP1_N: HAP1 N-termin 87.9 16 0.00034 31.1 28.6 94 146-239 206-299 (306)
174 KOG0979|consensus 87.8 30 0.00066 34.2 29.3 106 90-195 255-360 (1072)
175 PF09730 BicD: Microtubule-ass 87.4 28 0.00061 33.5 37.5 17 36-52 71-87 (717)
176 COG5185 HEC1 Protein involved 87.4 22 0.00047 32.1 32.5 85 6-104 271-358 (622)
177 TIGR03017 EpsF chain length de 86.8 23 0.0005 31.9 22.7 12 156-167 285-296 (444)
178 COG0497 RecN ATPase involved i 86.7 27 0.00059 32.5 26.5 107 142-252 265-371 (557)
179 PF08647 BRE1: BRE1 E3 ubiquit 86.6 8.7 0.00019 26.7 13.0 61 14-74 4-64 (96)
180 COG4026 Uncharacterized protei 86.5 15 0.00032 29.6 10.1 53 139-191 156-208 (290)
181 PF06818 Fez1: Fez1; InterPro 86.0 16 0.00034 29.1 22.2 14 179-192 136-149 (202)
182 PF06005 DUF904: Protein of un 85.8 7.7 0.00017 25.4 10.7 20 73-92 43-62 (72)
183 PF05483 SCP-1: Synaptonemal c 85.4 34 0.00073 32.4 37.2 16 166-181 369-384 (786)
184 PF03962 Mnd1: Mnd1 family; I 85.1 17 0.00037 28.7 12.6 60 113-175 105-164 (188)
185 PRK10698 phage shock protein P 85.1 19 0.00041 29.3 22.6 47 17-63 21-67 (222)
186 PF09730 BicD: Microtubule-ass 84.8 39 0.00084 32.6 37.6 25 73-97 125-149 (717)
187 PF07889 DUF1664: Protein of u 84.4 14 0.0003 27.1 12.7 44 76-119 68-111 (126)
188 COG1842 PspA Phage shock prote 84.4 21 0.00045 29.1 20.9 49 86-134 27-75 (225)
189 KOG4360|consensus 84.3 33 0.00071 31.3 17.4 100 52-151 202-301 (596)
190 COG4477 EzrA Negative regulato 83.1 38 0.00082 31.1 28.7 16 86-101 277-292 (570)
191 PF08317 Spc7: Spc7 kinetochor 82.0 33 0.00071 29.7 28.5 52 76-127 142-193 (325)
192 TIGR02977 phageshock_pspA phag 81.6 26 0.00057 28.3 24.1 52 17-68 21-72 (219)
193 TIGR02231 conserved hypothetic 80.8 34 0.00074 31.7 12.0 19 95-113 150-168 (525)
194 PF15290 Syntaphilin: Golgi-lo 80.2 34 0.00073 28.6 14.2 52 39-92 66-117 (305)
195 PF05335 DUF745: Protein of un 80.2 27 0.00059 27.6 19.0 39 127-165 132-170 (188)
196 COG4477 EzrA Negative regulato 80.1 49 0.0011 30.5 28.1 10 8-17 220-229 (570)
197 PF14073 Cep57_CLD: Centrosome 79.5 27 0.00059 27.2 21.3 43 154-196 121-163 (178)
198 PF12329 TMF_DNA_bd: TATA elem 79.2 15 0.00033 24.1 10.5 29 57-85 35-63 (74)
199 TIGR02977 phageshock_pspA phag 78.7 33 0.00073 27.7 23.6 48 45-92 28-75 (219)
200 PF09755 DUF2046: Uncharacteri 78.5 41 0.0009 28.7 33.8 64 198-261 225-292 (310)
201 PF05010 TACC: Transforming ac 78.1 34 0.00074 27.5 29.2 16 157-172 122-137 (207)
202 PF07889 DUF1664: Protein of u 77.8 25 0.00054 25.8 11.8 39 154-192 69-107 (126)
203 TIGR02231 conserved hypothetic 77.7 60 0.0013 30.1 12.8 30 150-179 75-104 (525)
204 PF06428 Sec2p: GDP/GTP exchan 77.7 8.7 0.00019 26.9 5.4 59 112-170 9-68 (100)
205 PF10234 Cluap1: Clusterin-ass 77.4 42 0.0009 28.1 15.0 62 71-132 178-239 (267)
206 PF10212 TTKRSYEDQ: Predicted 76.8 62 0.0013 29.8 14.5 64 71-134 422-485 (518)
207 KOG1962|consensus 76.6 38 0.00083 27.3 9.8 60 40-99 150-209 (216)
208 PF06428 Sec2p: GDP/GTP exchan 76.4 5.6 0.00012 27.9 4.2 37 73-109 12-49 (100)
209 PRK09841 cryptic autophosphory 76.0 80 0.0017 30.7 17.4 21 111-131 339-359 (726)
210 KOG4809|consensus 73.9 75 0.0016 29.4 27.1 68 35-102 339-406 (654)
211 TIGR02449 conserved hypothetic 73.7 21 0.00045 22.9 8.6 45 8-52 2-46 (65)
212 KOG0249|consensus 73.7 87 0.0019 30.1 21.7 33 53-85 96-128 (916)
213 PF04728 LPP: Lipoprotein leuc 73.6 19 0.0004 22.3 7.9 7 71-77 40-46 (56)
214 KOG2196|consensus 73.5 49 0.0011 27.1 16.0 105 160-269 99-203 (254)
215 PF08317 Spc7: Spc7 kinetochor 72.9 62 0.0013 28.0 29.2 55 81-135 133-187 (325)
216 PF02994 Transposase_22: L1 tr 72.0 15 0.00033 32.4 6.8 15 155-169 174-188 (370)
217 KOG4593|consensus 71.9 94 0.002 29.7 31.1 55 112-166 469-523 (716)
218 PF10779 XhlA: Haemolysin XhlA 70.3 27 0.00058 22.7 7.4 46 1-46 1-46 (71)
219 TIGR02449 conserved hypothetic 70.2 26 0.00055 22.4 8.5 37 150-186 25-61 (65)
220 PRK10698 phage shock protein P 69.3 60 0.0013 26.4 25.1 47 31-77 28-74 (222)
221 PF10205 KLRAQ: Predicted coil 69.2 37 0.0008 23.8 9.8 66 126-191 6-71 (102)
222 PF08647 BRE1: BRE1 E3 ubiquit 69.1 35 0.00076 23.6 13.3 64 29-92 5-68 (96)
223 PF05276 SH3BP5: SH3 domain-bi 68.9 65 0.0014 26.6 30.7 27 81-107 75-101 (239)
224 PF08826 DMPK_coil: DMPK coile 68.7 27 0.00058 22.0 9.8 26 67-92 30-55 (61)
225 PF11570 E2R135: Coiled-coil r 68.7 43 0.00094 24.5 14.5 11 47-57 42-52 (136)
226 PF12777 MT: Microtubule-bindi 68.1 82 0.0018 27.5 20.5 238 20-260 1-314 (344)
227 PF09738 DUF2051: Double stran 68.1 77 0.0017 27.1 13.6 88 42-136 78-165 (302)
228 PRK02119 hypothetical protein; 68.0 31 0.00067 22.6 7.5 21 167-187 9-29 (73)
229 PRK15422 septal ring assembly 67.7 33 0.00072 22.7 11.0 26 241-266 50-75 (79)
230 TIGR03017 EpsF chain length de 67.3 96 0.0021 27.9 24.3 12 154-165 262-273 (444)
231 PRK11519 tyrosine kinase; Prov 67.3 1.3E+02 0.0027 29.3 16.9 17 113-129 341-357 (719)
232 PHA01750 hypothetical protein 66.4 23 0.0005 22.4 4.7 9 7-15 43-51 (75)
233 TIGR01010 BexC_CtrB_KpsE polys 65.8 93 0.002 27.2 13.7 91 83-173 214-305 (362)
234 COG4717 Uncharacterized conser 64.8 1.5E+02 0.0033 29.3 31.3 55 203-257 782-838 (984)
235 KOG0243|consensus 64.6 1.6E+02 0.0036 29.7 22.0 69 114-182 444-512 (1041)
236 COG1382 GimC Prefoldin, chaper 63.9 53 0.0012 23.8 11.8 37 159-195 12-48 (119)
237 PF10205 KLRAQ: Predicted coil 63.4 49 0.0011 23.2 11.0 42 52-93 30-71 (102)
238 PRK03947 prefoldin subunit alp 62.5 61 0.0013 24.0 13.7 33 71-103 96-128 (140)
239 TIGR01000 bacteriocin_acc bact 61.8 1.3E+02 0.0027 27.4 24.2 22 215-236 290-311 (457)
240 PF07106 TBPIP: Tat binding pr 60.2 76 0.0017 24.4 10.6 7 177-183 96-102 (169)
241 PF05278 PEARLI-4: Arabidopsis 60.1 1E+02 0.0022 25.8 14.5 19 78-96 161-179 (269)
242 PRK04325 hypothetical protein; 59.9 47 0.001 21.8 7.8 24 28-51 10-33 (74)
243 PF02403 Seryl_tRNA_N: Seryl-t 59.4 59 0.0013 22.8 9.4 28 46-73 34-61 (108)
244 cd00632 Prefoldin_beta Prefold 59.3 59 0.0013 22.8 11.7 31 161-191 7-37 (105)
245 COG4717 Uncharacterized conser 59.1 1.9E+02 0.0041 28.6 33.0 36 3-38 554-589 (984)
246 PF07106 TBPIP: Tat binding pr 58.3 83 0.0018 24.2 10.8 15 173-187 122-136 (169)
247 PF10779 XhlA: Haemolysin XhlA 58.1 48 0.0011 21.4 6.8 30 162-191 22-51 (71)
248 PF15290 Syntaphilin: Golgi-lo 58.0 1.1E+02 0.0025 25.7 12.9 27 160-186 75-101 (305)
249 KOG3564|consensus 57.8 1.5E+02 0.0033 27.1 10.4 63 34-96 42-104 (604)
250 PF04912 Dynamitin: Dynamitin 57.5 1.4E+02 0.003 26.5 24.5 22 3-24 91-112 (388)
251 PRK15178 Vi polysaccharide exp 56.8 1.5E+02 0.0033 26.8 16.8 92 44-135 245-338 (434)
252 PF04949 Transcrip_act: Transc 56.7 83 0.0018 23.7 13.5 42 224-265 92-133 (159)
253 PF07795 DUF1635: Protein of u 56.6 1E+02 0.0023 24.8 8.2 55 1-58 3-57 (214)
254 PF14193 DUF4315: Domain of un 55.8 45 0.00099 22.5 5.2 34 7-40 2-35 (83)
255 PF14193 DUF4315: Domain of un 55.5 57 0.0012 22.0 5.6 34 77-110 2-35 (83)
256 PRK15396 murein lipoprotein; P 55.5 59 0.0013 21.6 7.4 22 58-79 49-70 (78)
257 KOG2991|consensus 54.5 1.3E+02 0.0027 25.1 23.0 25 141-165 179-203 (330)
258 KOG0243|consensus 54.1 2.5E+02 0.0055 28.4 32.4 96 7-102 412-516 (1041)
259 KOG1962|consensus 54.0 1.2E+02 0.0025 24.6 11.7 58 203-260 152-209 (216)
260 COG0497 RecN ATPase involved i 53.7 2E+02 0.0042 27.1 27.6 25 204-228 344-368 (557)
261 PRK15178 Vi polysaccharide exp 53.1 1.8E+02 0.0039 26.4 14.5 13 67-79 291-303 (434)
262 COG3352 FlaC Putative archaeal 52.8 99 0.0021 23.4 10.2 93 175-267 45-138 (157)
263 PRK09973 putative outer membra 52.7 70 0.0015 21.6 7.2 38 43-80 33-70 (85)
264 PF04728 LPP: Lipoprotein leuc 52.6 54 0.0012 20.3 8.2 25 67-91 8-32 (56)
265 PF10267 Tmemb_cc2: Predicted 52.6 1.7E+02 0.0037 26.1 14.1 17 2-18 7-23 (395)
266 KOG1853|consensus 52.2 1.4E+02 0.0029 24.8 22.2 27 78-104 93-119 (333)
267 PRK10803 tol-pal system protei 52.2 1.4E+02 0.003 24.9 9.7 37 226-262 64-100 (263)
268 PF06785 UPF0242: Uncharacteri 51.0 1.6E+02 0.0036 25.4 15.5 88 139-226 92-179 (401)
269 PRK09343 prefoldin subunit bet 51.0 93 0.002 22.5 11.8 14 154-167 79-92 (121)
270 PF04912 Dynamitin: Dynamitin 50.2 1.9E+02 0.004 25.8 19.4 16 3-18 98-113 (388)
271 PF13863 DUF4200: Domain of un 49.3 97 0.0021 22.3 14.6 63 187-249 45-107 (126)
272 TIGR02132 phaR_Bmeg polyhydrox 48.6 1.3E+02 0.0028 23.5 9.3 66 68-133 71-136 (189)
273 TIGR01000 bacteriocin_acc bact 47.8 2.2E+02 0.0047 25.9 24.0 21 220-240 288-308 (457)
274 PF05266 DUF724: Protein of un 47.5 1.4E+02 0.0031 23.6 13.7 16 68-83 130-145 (190)
275 PRK00295 hypothetical protein; 46.8 77 0.0017 20.4 8.0 20 31-50 9-28 (68)
276 KOG0972|consensus 46.6 1.8E+02 0.004 24.7 15.9 32 230-261 335-366 (384)
277 PF04508 Pox_A_type_inc: Viral 46.3 23 0.00051 17.5 1.9 16 1-16 3-18 (23)
278 PF08172 CASP_C: CASP C termin 46.1 1.7E+02 0.0037 24.2 9.8 52 65-116 82-133 (248)
279 PRK09973 putative outer membra 46.0 93 0.002 21.1 5.8 16 8-23 26-41 (85)
280 PF11180 DUF2968: Protein of u 45.9 1.5E+02 0.0032 23.5 13.1 16 61-76 104-119 (192)
281 PF06698 DUF1192: Protein of u 45.0 76 0.0017 19.8 5.5 31 71-101 23-53 (59)
282 PF07321 YscO: Type III secret 44.7 1.4E+02 0.003 22.7 20.8 85 23-107 21-105 (152)
283 PRK13729 conjugal transfer pil 43.6 1.7E+02 0.0038 26.7 8.3 21 76-96 97-117 (475)
284 PF09787 Golgin_A5: Golgin sub 43.5 2.7E+02 0.0059 25.8 29.5 14 121-134 284-297 (511)
285 PF11471 Sugarporin_N: Maltopo 43.3 61 0.0013 20.3 4.0 17 155-171 34-50 (60)
286 KOG4809|consensus 42.3 2.9E+02 0.0063 25.8 27.9 61 7-67 332-392 (654)
287 PF13166 AAA_13: AAA domain 42.2 3.3E+02 0.0071 26.3 27.6 38 210-247 418-455 (712)
288 KOG0972|consensus 42.1 2.2E+02 0.0047 24.3 12.5 106 73-188 224-329 (384)
289 COG5185 HEC1 Protein involved 42.0 2.8E+02 0.006 25.4 29.6 14 6-19 295-308 (622)
290 PF02050 FliJ: Flagellar FliJ 41.7 1.2E+02 0.0026 21.1 16.5 26 84-109 60-85 (123)
291 KOG3091|consensus 40.8 2.9E+02 0.0063 25.4 18.1 38 62-99 341-378 (508)
292 KOG1937|consensus 40.7 2.8E+02 0.0061 25.2 25.3 29 106-134 295-323 (521)
293 PF06009 Laminin_II: Laminin D 40.5 9.3 0.0002 28.5 0.0 45 150-194 14-58 (138)
294 TIGR03752 conj_TIGR03752 integ 40.3 2.9E+02 0.0064 25.3 11.3 44 42-85 60-103 (472)
295 PF00015 MCPsignal: Methyl-acc 40.2 1.8E+02 0.0039 22.7 20.7 11 94-104 60-70 (213)
296 KOG0288|consensus 40.0 2.8E+02 0.006 24.9 16.1 14 177-190 58-71 (459)
297 KOG2010|consensus 39.8 2.5E+02 0.0054 24.3 10.8 82 19-100 125-206 (405)
298 PF15254 CCDC14: Coiled-coil d 39.6 3.8E+02 0.0082 26.3 20.9 74 37-110 390-468 (861)
299 PF07989 Microtub_assoc: Micro 39.0 1.1E+02 0.0024 20.1 8.5 28 59-86 4-31 (75)
300 PF08172 CASP_C: CASP C termin 38.7 2.3E+02 0.005 23.5 11.2 47 200-246 84-130 (248)
301 PF05064 Nsp1_C: Nsp1-like C-t 38.6 78 0.0017 22.8 4.6 27 236-262 56-82 (116)
302 KOG0982|consensus 37.9 3.1E+02 0.0066 24.8 24.2 221 38-260 219-440 (502)
303 PF06810 Phage_GP20: Phage min 37.8 1.8E+02 0.0039 22.1 8.8 23 20-42 20-42 (155)
304 PF11180 DUF2968: Protein of u 37.8 2E+02 0.0044 22.7 14.8 71 168-238 113-183 (192)
305 KOG1655|consensus 37.8 2.1E+02 0.0045 22.8 12.6 39 157-195 16-54 (218)
306 PF06120 Phage_HK97_TLTM: Tail 37.7 2.6E+02 0.0057 23.9 16.3 24 57-80 43-66 (301)
307 PF09486 HrpB7: Bacterial type 37.5 1.9E+02 0.0041 22.2 18.9 9 45-53 26-34 (158)
308 TIGR03752 conj_TIGR03752 integ 37.2 3.3E+02 0.0072 24.9 11.7 47 46-92 57-103 (472)
309 KOG2391|consensus 36.9 2.9E+02 0.0062 24.1 8.5 45 56-100 240-284 (365)
310 PF03962 Mnd1: Mnd1 family; I 36.9 2.1E+02 0.0045 22.6 13.4 28 5-32 68-95 (188)
311 PF14257 DUF4349: Domain of un 35.6 1.7E+02 0.0036 24.3 6.8 31 62-92 125-155 (262)
312 PF09486 HrpB7: Bacterial type 34.6 2.1E+02 0.0046 21.9 19.4 107 154-260 30-137 (158)
313 PF05064 Nsp1_C: Nsp1-like C-t 34.4 40 0.00086 24.3 2.5 53 42-94 37-89 (116)
314 PF14712 Snapin_Pallidin: Snap 34.2 1.5E+02 0.0032 20.0 10.9 40 156-195 10-49 (92)
315 PF05546 She9_MDM33: She9 / Md 33.8 2.5E+02 0.0054 22.6 16.2 49 120-168 34-82 (207)
316 TIGR01010 BexC_CtrB_KpsE polys 31.9 3.5E+02 0.0075 23.6 19.3 26 51-76 173-198 (362)
317 PF05266 DUF724: Protein of un 31.1 2.7E+02 0.0058 22.1 15.8 25 230-254 159-183 (190)
318 PF13863 DUF4200: Domain of un 31.0 2E+02 0.0043 20.6 15.5 62 200-261 44-105 (126)
319 PF14257 DUF4349: Domain of un 30.9 3.1E+02 0.0066 22.7 7.6 29 156-184 165-193 (262)
320 PF09744 Jnk-SapK_ap_N: JNK_SA 30.2 2.5E+02 0.0055 21.5 14.0 30 163-192 85-114 (158)
321 PF15188 CCDC-167: Coiled-coil 30.0 1.8E+02 0.0039 19.7 6.7 25 214-238 41-65 (85)
322 PF08657 DASH_Spc34: DASH comp 29.9 2.6E+02 0.0055 23.4 6.8 21 157-177 236-256 (259)
323 PF15556 Zwint: ZW10 interacto 29.7 2.9E+02 0.0064 22.1 15.3 9 88-96 146-154 (252)
324 PF04899 MbeD_MobD: MbeD/MobD 29.4 1.6E+02 0.0036 19.1 9.3 47 200-246 19-65 (70)
325 PF03670 UPF0184: Uncharacteri 29.3 1.8E+02 0.004 19.6 6.4 33 148-180 28-60 (83)
326 PF09787 Golgin_A5: Golgin sub 27.8 5E+02 0.011 24.1 27.0 12 247-258 416-427 (511)
327 PLN02939 transferase, transfer 27.7 6.7E+02 0.014 25.6 29.4 22 44-65 159-180 (977)
328 PF13094 CENP-Q: CENP-Q, a CEN 27.0 2.8E+02 0.0061 21.0 10.9 62 72-133 23-84 (160)
329 PF10458 Val_tRNA-synt_C: Valy 26.8 1.7E+02 0.0037 18.4 5.6 19 116-134 9-27 (66)
330 PHA02682 ORF080 virion core pr 26.7 2.5E+02 0.0053 22.3 5.7 22 3-24 212-233 (280)
331 PF15035 Rootletin: Ciliary ro 26.5 3.2E+02 0.0069 21.5 17.9 32 205-236 130-161 (182)
332 PF14992 TMCO5: TMCO5 family 26.4 4E+02 0.0087 22.6 15.2 22 63-84 26-47 (280)
333 PRK13182 racA polar chromosome 26.3 3.2E+02 0.0068 21.3 9.1 15 71-85 127-141 (175)
334 PF15035 Rootletin: Ciliary ro 26.1 3.3E+02 0.007 21.4 18.5 13 26-38 22-34 (182)
335 PF10267 Tmemb_cc2: Predicted 25.2 5E+02 0.011 23.3 15.5 14 57-70 253-266 (395)
336 COG1730 GIM5 Predicted prefold 25.2 3E+02 0.0066 20.7 13.3 43 67-109 92-134 (145)
337 PRK10361 DNA recombination pro 25.0 5.5E+02 0.012 23.7 21.0 16 232-247 142-157 (475)
338 PF08946 Osmo_CC: Osmosensory 24.8 1.6E+02 0.0034 17.3 3.6 18 165-182 17-34 (46)
339 KOG1899|consensus 24.3 6.4E+02 0.014 24.2 21.0 49 44-92 107-155 (861)
340 PF04100 Vps53_N: Vps53-like, 24.2 5.1E+02 0.011 23.0 18.9 114 73-191 61-174 (383)
341 PRK10636 putative ABC transpor 23.6 6.6E+02 0.014 24.1 10.3 12 120-131 614-625 (638)
342 PF01920 Prefoldin_2: Prefoldi 23.5 2.5E+02 0.0054 19.2 13.0 19 165-183 10-28 (106)
343 TIGR00414 serS seryl-tRNA synt 23.5 5.5E+02 0.012 23.1 10.5 24 112-135 77-100 (418)
344 PF09744 Jnk-SapK_ap_N: JNK_SA 23.3 3.5E+02 0.0075 20.7 15.2 40 157-196 86-125 (158)
345 PF03961 DUF342: Protein of un 23.0 5.7E+02 0.012 23.2 10.0 13 6-18 334-346 (451)
346 PF14282 FlxA: FlxA-like prote 22.6 2.8E+02 0.0061 19.5 8.1 11 205-215 54-64 (106)
347 PF02996 Prefoldin: Prefoldin 22.4 2.9E+02 0.0062 19.5 6.4 37 69-105 77-113 (120)
348 TIGR02473 flagell_FliJ flagell 22.1 3.2E+02 0.0068 19.8 17.2 44 120-163 70-113 (141)
349 TIGR00998 8a0101 efflux pump m 21.9 5E+02 0.011 22.1 15.4 111 51-165 76-205 (334)
350 PF12761 End3: Actin cytoskele 21.8 4.2E+02 0.009 21.1 8.8 24 112-135 161-184 (195)
351 PF07989 Microtub_assoc: Micro 21.7 2.5E+02 0.0054 18.5 8.4 51 142-192 10-61 (75)
352 PF05615 THOC7: Tho complex su 21.3 3.4E+02 0.0074 19.9 13.8 39 117-156 87-125 (139)
353 PF12761 End3: Actin cytoskele 21.0 4.3E+02 0.0094 21.0 9.1 17 4-20 101-117 (195)
354 PRK05431 seryl-tRNA synthetase 20.4 6.4E+02 0.014 22.8 10.6 24 112-135 74-97 (425)
No 1
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.93 E-value=5.2e-23 Score=168.41 Aligned_cols=232 Identities=54% Similarity=0.771 Sum_probs=218.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy1411 39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118 (270)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~ 118 (270)
+..+++.+...+..+...+.........++.++.++.+|+..++..++.+..++..+..++..++...++..+.++.+++
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555556666677778889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE 198 (270)
Q Consensus 119 ~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 198 (270)
+.....+.+..++.++..+...+.++..+|+++.+++.+++..|.+++.|+..++.++..|+.++..+.+.|++++...+
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
.+..+.+.|...|..+...+..+..+++.++..+..|...+..++..+.....++..+..+||+++++||+|
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG1003|consensus
Probab=99.88 E-value=2.8e-19 Score=135.49 Aligned_cols=203 Identities=50% Similarity=0.720 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh
Q psy1411 68 ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK 147 (270)
Q Consensus 68 e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~ 147 (270)
+..+..+.+|+..++.+++..++++..+..++..++....+..+.++.++++...+++.++.++.+++++......+.++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF 227 (270)
Q Consensus 148 ~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 227 (270)
|+++.+++..++++|.+.+.|++..++++..|.+.+..+.++++++....+.+..+.+.+...+..+..++.++..+.++
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 228 AEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 228 ~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
+++.+..|...+..|+..+.....++..+..+||++...++++
T Consensus 163 aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~~ 205 (205)
T KOG1003|consen 163 AERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELENL 205 (205)
T ss_pred HHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999875
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.51 E-value=8.8e-10 Score=110.21 Aligned_cols=261 Identities=18% Similarity=0.267 Sum_probs=143.5
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE 86 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~ 86 (270)
.+..+..+++.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+..++.
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 750 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHH
Q psy1411 87 KSEERSGTATAKLAEASQAADEAN-------RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE 159 (270)
Q Consensus 87 ~~~~~l~~~~~~l~~~e~~~~~~~-------~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~ 159 (270)
.+...+..+...+..+...+..+. ..+..+...+..+...+..+...+..+...+......+......+..+.
T Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~ 830 (1179)
T TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433 3333444344444444555555555555555555555555555555666
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 160 DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239 (270)
Q Consensus 160 ~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~ 239 (270)
..+..+..++..+..++..+...+..+...+..+......+......+...+..+...+..+...+..+...+..+...+
T Consensus 831 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1179)
T TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655555555555555555556666666666666666666666666666666666666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411 240 DRLEDELGLNKDRYKSLADEMDSTFAEL 267 (270)
Q Consensus 240 ~~le~~l~~~~~~~~~~~~eld~~~~~~ 267 (270)
..+...+..+......+...++++...+
T Consensus 911 ~~l~~~l~~l~~~~~~~~~~~~~l~~~l 938 (1179)
T TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRI 938 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665555443
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.48 E-value=4.3e-10 Score=92.30 Aligned_cols=194 Identities=25% Similarity=0.338 Sum_probs=106.2
Q ss_pred HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
+||..++.+++.+..++..+...+.........+...+.++...+..+...+..+..++..+...+..+..+....+..+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888887777777777777777666655555555444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~ 165 (270)
..++.+......++..++..+..+.........++..+...+..++..|..+...+..+...+.++...+..+.+.+..+
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444444444444444444444444444444444444444445555555555
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Q psy1411 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEK 199 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 199 (270)
+...+.+..+...++.++..+...+..++...+.
T Consensus 161 E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~ 194 (237)
T PF00261_consen 161 EASEEKASEREDEYEEKIRDLEEKLKEAENRAEF 194 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444454444444444443333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.44 E-value=2.9e-09 Score=106.57 Aligned_cols=259 Identities=20% Similarity=0.286 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLD-------TTKKNLDQAVKDLEEREKALAAAESEVAALNR 76 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~ 76 (270)
+..++..+..++..+...+..+...+..+...+..+...+. .+...+..+...+..+...+..+..++..+..
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~ 754 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444444444444443333333 33333333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHH
Q psy1411 77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156 (270)
Q Consensus 77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~ 156 (270)
.+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+......+......+..+...+.
T Consensus 755 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 834 (1179)
T TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~ 236 (270)
.+...+..+...+..+...+..+...+..+...+..+......+......+...+..+...+..+...+..+...+..+.
T Consensus 835 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 914 (1179)
T TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544444445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy1411 237 KEVDRLEDELGLNKDRYKSLADEMDS 262 (270)
Q Consensus 237 e~~~~le~~l~~~~~~~~~~~~eld~ 262 (270)
..+..+...+..+......+...+..
T Consensus 915 ~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444443
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.34 E-value=5.1e-08 Score=97.68 Aligned_cols=108 Identities=11% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
.++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 753 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMC 113 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~ 113 (270)
..+...+..+...+..+...+..+...+
T Consensus 754 ~~~~~el~~l~~~i~~l~~~i~~l~~el 781 (1164)
T TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEAL 781 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.33 E-value=5.7e-08 Score=97.29 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~ 233 (270)
.+..+...+..+..++..+..++..+...+..+...+..+......+......+...+..+...+......+..+...+.
T Consensus 393 ~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~ 472 (1164)
T TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344434444443333333333333333333333334443333333333334444
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q psy1411 234 KLQKEVDRLEDELGLNKDR 252 (270)
Q Consensus 234 ~l~e~~~~le~~l~~~~~~ 252 (270)
.+...+..+...+..+...
T Consensus 473 ~~~~~l~~l~~~l~~l~~~ 491 (1164)
T TIGR02169 473 DLKEEYDRVEKELSKLQRE 491 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.30 E-value=1.6e-07 Score=93.70 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=124.8
Q ss_pred HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
.++..|..++.........+...+..+......+...+..++..+..+...+..+...+..+......+..++..+...+
T Consensus 667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1163)
T COG1196 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777888888888888888888888888888878888888777777777778788888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~ 165 (270)
..+...+..+...+..++..+.........+...+..+...+......+.. ....+..+..++..+..++..|
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 819 (1163)
T COG1196 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE-------LEEELEEAERRLDALERELESL 819 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777666666655555555555554444443333333 3333333334444455555555
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLA 215 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (270)
..+...+...+..+..++..+...+..+...+..+...+..+...+..+.
T Consensus 820 ~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 869 (1163)
T COG1196 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333333333333333333
No 9
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.29 E-value=1.5e-09 Score=81.47 Aligned_cols=141 Identities=33% Similarity=0.430 Sum_probs=122.2
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE 86 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~ 86 (270)
||..|+.+.+.+.++++.++..+..++.. ....+.++.++..++..++.+++
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~----------------------------~~~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQE----------------------------NEQKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888777777666554 46667778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHH
Q psy1411 87 KSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166 (270)
Q Consensus 87 ~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e 166 (270)
.+...+..+...+.........++ .+..++..+++.++.....|..+...+..++..++.+.+++..++.....|+
T Consensus 53 ~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 53 KLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 999999999988888877765444 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhHHHHHHHH
Q psy1411 167 DRVKSGDAKIMEL 179 (270)
Q Consensus 167 ~r~~~~~~~~~~l 179 (270)
.+++.+..++..+
T Consensus 129 ~k~eel~~k~~~~ 141 (143)
T PF12718_consen 129 EKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 10
>KOG1003|consensus
Probab=99.25 E-value=2.9e-08 Score=76.02 Aligned_cols=191 Identities=21% Similarity=0.329 Sum_probs=156.8
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTT-------KKNLDQAVKDLEEREKALAAAESEVAA 73 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~e~~~~~ 73 (270)
|.+|+++|..+..+++.++.++..+...+.++.+..+........+ ......+..++.++..-..++...+..
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999998766555544333 334445556666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHh
Q psy1411 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSR 153 (270)
Q Consensus 74 l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~ 153 (270)
..+++.-+++++.....+.+...+.+..+...+.-+...++.+......+....+.....++.+...+.++....+.+.+
T Consensus 86 VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aER 165 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAER 165 (205)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 88888888899999988888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
++..|+..+++|+..+.....+...+...++.....|.
T Consensus 166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998888888887777777777666554
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.22 E-value=7.9e-07 Score=88.75 Aligned_cols=264 Identities=20% Similarity=0.323 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEE 83 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~ 83 (270)
+..++..+...+..+......+...+..+...+..+...+..+...+..+...+..+......+...+..+...+..+..
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 751 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888877777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411 84 DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE 163 (270)
Q Consensus 84 el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~ 163 (270)
.+..+..++..+...+..+......+...+..+..........+..++..+...+..+..+...+.....+...+..++.
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 831 (1163)
T COG1196 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666666666666666666666666666666666666665555555555555555555555666666
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 164 VAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 243 (270)
Q Consensus 164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le 243 (270)
.+..++..+..++..+...+..+...+..+......+......+...+..+......+...+..+...+..+...+..+.
T Consensus 832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 911 (1163)
T COG1196 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665555566666666666666666666666666666666666666666666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411 244 DELGLNKDRYKSLADEMDSTFAEL 267 (270)
Q Consensus 244 ~~l~~~~~~~~~~~~eld~~~~~~ 267 (270)
..+..+..+...+...+......+
T Consensus 912 ~~~~~l~~~~~~~~~~~~~~~~~~ 935 (1163)
T COG1196 912 ERLEELEAKLERLEVELPELEEEL 935 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666666666666665555554433
No 12
>KOG0161|consensus
Probab=98.94 E-value=4.5e-05 Score=77.74 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1411 157 FVEDEL 162 (270)
Q Consensus 157 ~l~~~l 162 (270)
.+++++
T Consensus 1045 kle~el 1050 (1930)
T KOG0161|consen 1045 KLEGEL 1050 (1930)
T ss_pred HHHHHH
Confidence 333333
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.94 E-value=4e-05 Score=72.34 Aligned_cols=115 Identities=12% Similarity=0.264 Sum_probs=73.8
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE 86 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~ 86 (270)
+|..+...-.+...+++.+...+...+....-++.+++.++..+......+......+..+..+...+...+..+.+.++
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445566666666666666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy1411 87 KSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121 (270)
Q Consensus 87 ~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~ 121 (270)
.....+..+..+++.++..+.+-+..+..+..++.
T Consensus 389 ~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 389 KKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777776666666665555555555544
No 14
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.91 E-value=7.7e-07 Score=66.87 Aligned_cols=137 Identities=27% Similarity=0.391 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAES---EVAALNRK 77 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~---~~~~l~~r 77 (270)
|.++|-.-+......+.+...+..++......+..+..+......+...+..+...+..+...+..... .+..+.+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr 81 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR 81 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence 666777777666666666666666666666666655555555555555555555555555555444443 34589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA 137 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~ 137 (270)
+..|+.+++.....+..+..++..+....+.+++.+..|+.+....+..++.+...+..+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998887643
No 15
>KOG0161|consensus
Probab=98.91 E-value=6.3e-05 Score=76.70 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411 100 AEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179 (270)
Q Consensus 100 ~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l 179 (270)
...+..+..+..++..+...+..+..+...++..+.+....+.....+...+......++..+++++.+++.-......+
T Consensus 960 ~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~ 1039 (1930)
T KOG0161|consen 960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMEL 1039 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444445555555555555555555555555544444444
Q ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 180 EEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLA 215 (270)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (270)
+.....+..++..+......+......+...+...+
T Consensus 1040 Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke 1075 (1930)
T KOG0161|consen 1040 EKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKE 1075 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333333333333333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.81 E-value=0.00014 Score=68.75 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=19.3
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKN 49 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 49 (270)
..+.+..+++.+...++.++..+..+...+......+..+...
T Consensus 122 E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 122 ERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=0.00026 Score=72.00 Aligned_cols=47 Identities=6% Similarity=0.139 Sum_probs=18.3
Q ss_pred hhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 168 RVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL 214 (270)
Q Consensus 168 r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 214 (270)
.+..+...+..+...+..+...+..+.............+.+++..+
T Consensus 978 el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 978 ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444433333333333333333333333
No 18
>KOG0250|consensus
Probab=98.68 E-value=0.00041 Score=66.41 Aligned_cols=188 Identities=19% Similarity=0.308 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy1411 63 ALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAE 142 (270)
Q Consensus 63 ~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~ 142 (270)
.+.....++......+...+..+..+...+.....++..++..+.+.+..+..+......-..++..+...+...+....
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 143 DADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI-MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221 (270)
Q Consensus 143 ~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (270)
+.+..+.+....+..+....+.++..+..+..+. ..+..++.+....+..+....+++......+...+..+......-
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888887777777 777777777777777777776666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELGLNK 250 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~ 250 (270)
.......+..+..++..+......+..+.
T Consensus 435 ~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555554444433
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.60 E-value=0.00047 Score=63.21 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=59.8
Q ss_pred HHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218 (270)
Q Consensus 139 ~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (270)
.....+......+...+.....++..+..+...+...+..|...+..+...|................+...+..+....
T Consensus 302 ~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea 381 (522)
T PF05701_consen 302 EEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA 381 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444555555555555555555555555555554444444444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260 (270)
Q Consensus 219 ~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~el 260 (270)
..+..........+..+...+......+...+.++.-...++
T Consensus 382 e~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 382 EEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444545555555555444444444444444444433
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.00048 Score=62.07 Aligned_cols=48 Identities=13% Similarity=0.358 Sum_probs=18.9
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAV 54 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (270)
+++...++...+......++.....++..+..++..+...+.....+.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333444443333333333333333333333333
No 21
>KOG0996|consensus
Probab=98.53 E-value=0.0011 Score=63.88 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
.+..+...+..+...++.....+.+++...+.+...+......+..+.......+..+.
T Consensus 406 ~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 406 KLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333344444333333333333
No 22
>KOG0977|consensus
Probab=98.53 E-value=0.00068 Score=61.14 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=140.2
Q ss_pred HhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 13 MEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 13 ~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
.-++.....-..++..+..+...+..+...+.............+......+..+++++..+.+++..+++++..+..+.
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en 178 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444444444444444444444444444555555666677788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH----H--------------------HHHHHhHhhhhH
Q psy1411 93 GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK----E--------------------ARLLAEDADAKS 148 (270)
Q Consensus 93 ~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~----~--------------------~~~~~~~~~~~~ 148 (270)
..+...|..+...++.----...+.+++..+.+++..+..... + +...+.+....|
T Consensus 179 ~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqy 258 (546)
T KOG0977|consen 179 SRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQY 258 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776666667777777777777777663332 1 111222222222
Q ss_pred HHHHhHHHHHHHHHHHH-HHhhHhHH-------HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy1411 149 DEVSRKLAFVEDELEVA-EDRVKSGD-------AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL-- 218 (270)
Q Consensus 149 ~e~~~~~~~l~~~l~~~-e~r~~~~~-------~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 218 (270)
+.. ...-..++..| ..++..+. .......+++..+...+-.+..+..++...-..+...|..+.-.+
T Consensus 259 e~~---~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 259 EAI---SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 211 11122222222 12222222 222334455555555555555555555555555555666555443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy1411 219 --KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDST 263 (270)
Q Consensus 219 --~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~ 263 (270)
.-.+..+...+..+..++++...+..+++.+=--...+..+|..+
T Consensus 336 ~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 336 DQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY 382 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence 334445666677777777777777777776666666666666554
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.0033 Score=61.72 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=3.6
Q ss_pred HHHHHhhhHH
Q psy1411 241 RLEDELGLNK 250 (270)
Q Consensus 241 ~le~~l~~~~ 250 (270)
.+...+..+.
T Consensus 463 ~l~~~~~~l~ 472 (880)
T PRK03918 463 RIEKELKEIE 472 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.37 E-value=0.0012 Score=56.67 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVD--------LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRK 77 (270)
Q Consensus 6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r 77 (270)
..|..|=.-+...-+++..++.....+...+..+... ...+...+..+...+..+......+..++..+...
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 3344444444444444444444444444433332222 22233344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
+..+...+.........+...+..++..++........++.++..+.+++..+....
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444444444444444444445555555555554444433
No 25
>KOG0971|consensus
Probab=98.36 E-value=0.0025 Score=59.96 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy1411 199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRY 253 (270)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~ 253 (270)
++...++.+.--+..+......+...+-+....|.+.++....+...++.+.-..
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~ 548 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQ 548 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555566665666666666666666666777777777777777777666555443
No 26
>KOG0971|consensus
Probab=98.36 E-value=0.0025 Score=59.91 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~ 185 (270)
+++.++.....+.+.+-.++.-..........+..+++-....+..+...-+.+.++++.++..+..|.++++.
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555555566666666666666666666666777777777666666543
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=98.36 E-value=0.0035 Score=61.50 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q psy1411 248 LNKDRYKSLAD 258 (270)
Q Consensus 248 ~~~~~~~~~~~ 258 (270)
.+...+..+..
T Consensus 463 ~l~~~~~~l~~ 473 (880)
T PRK03918 463 RIEKELKEIEE 473 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 28
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.34 E-value=0.0025 Score=59.17 Aligned_cols=208 Identities=14% Similarity=0.226 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHh----------------HhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRAD----------------KVEVDLDTTKKNLDQAVKDLEEREKALAA 66 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 66 (270)
.+..++..|..+++....+...++..+..+..+.. .+...+..++..+..+..++.........
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~ 112 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQ 112 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655333 12333333333333333333222222122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANR---MCKVLENRSQQDEERMDQLTNQLKEARLLAED 143 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~---~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~ 143 (270)
+..-......|+..++..+.++.........-++.+......+.+ .-..|+.++..+++..-.+.+.-.+....+..
T Consensus 113 Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~ 192 (617)
T PF15070_consen 113 LSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQS 192 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 221122223344444444444444444444444444433333332 23445555555555555555554444555555
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Q psy1411 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQ 210 (270)
Q Consensus 144 ~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (270)
......++..++..+...+..+..++..-...+..|....+.....|..+.+.-..+....+.+...
T Consensus 193 Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 193 EQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566777777788888888888777777777777777777777777665544444444444444
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.33 E-value=0.0024 Score=58.62 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 155 LAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225 (270)
Q Consensus 155 ~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (270)
+.++..+|+.....+..+...+..|......+..+|.........+..........+..+..++......+
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444444444444444444444444444444333
No 30
>KOG0994|consensus
Probab=98.29 E-value=0.0043 Score=59.88 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHH
Q psy1411 72 AALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEV 151 (270)
Q Consensus 72 ~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~ 151 (270)
.....+...+....+.+.+.++.+......+...+..+...+....+.+..++++....+..+..+...+.++....+++
T Consensus 1552 ~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1552 ERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 152 ~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
..++.....+...++..+..+..+....+..++.+...++
T Consensus 1632 k~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~ 1671 (1758)
T KOG0994|consen 1632 KHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYE 1671 (1758)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444444444444433
No 31
>KOG0996|consensus
Probab=98.28 E-value=0.0048 Score=59.74 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=9.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q psy1411 117 ENRSQQDEERMDQLTNQLKEAR 138 (270)
Q Consensus 117 ~~~~~~~e~~~~~le~~l~~~~ 138 (270)
...+.....++..+...+...+
T Consensus 439 ~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.27 E-value=0.0037 Score=58.13 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1411 53 AVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCK 114 (270)
Q Consensus 53 ~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~ 114 (270)
+...+..+......+..++..+...+..+...+..+...+..+...+..++..+..+.....
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444344344444444444444444444443333
No 33
>PRK11637 AmiB activator; Provisional
Probab=98.27 E-value=0.0029 Score=56.76 Aligned_cols=79 Identities=10% Similarity=0.181 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 27 GQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105 (270)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~ 105 (270)
..+..+...+..+...+..++..+..+...+..+..++..+...+..+...+..++.++..+...+..++..+......
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444444444444444444444444444444444444444444444444444444444444444333333333
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.26 E-value=0.0022 Score=55.08 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy1411 220 EAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264 (270)
Q Consensus 220 ~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~ 264 (270)
.....+..++..+..++..+......++.+-.-.-.+..+|..+.
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555566666666665555555555555555566665543
No 35
>KOG0964|consensus
Probab=98.26 E-value=0.0046 Score=58.72 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy1411 200 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDST 263 (270)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~ 263 (270)
+...+.........+...+..++..+......+..+...+.....+++.+...+..+..++|.+
T Consensus 402 l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 402 LKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444444444444444444433
No 36
>KOG0250|consensus
Probab=98.24 E-value=0.0056 Score=59.02 Aligned_cols=8 Identities=50% Similarity=0.451 Sum_probs=2.8
Q ss_pred HHHHHHhH
Q psy1411 136 EARLLAED 143 (270)
Q Consensus 136 ~~~~~~~~ 143 (270)
.++..+..
T Consensus 341 ~~r~~~~~ 348 (1074)
T KOG0250|consen 341 EARKDLDD 348 (1074)
T ss_pred HHHHHHHH
Confidence 33333333
No 37
>KOG0933|consensus
Probab=98.23 E-value=0.0056 Score=58.38 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~ 152 (270)
.+...+..+.+++..+..++.+....+..+...+..++..++.... .-+..+..+...+..+...++.....++...
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~---~re~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA---NRERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666655555555555555544444433322 1233444444445444555555555554444
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV 232 (270)
Q Consensus 153 ~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~ 232 (270)
.....+.-+.+.++..+......+..+...+..+..++..+.................+...........+.+...-..+
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 44555555555555555555555555555555555555555555555555556666666666666666666665555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q psy1411 233 KKLQKEVDRLEDELGLNKDRYKSL 256 (270)
Q Consensus 233 ~~l~e~~~~le~~l~~~~~~~~~~ 256 (270)
..+...........+.+...+.++
T Consensus 895 e~~~~e~~~~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 895 EKCLSEKSDGELERKKLEHEVTKL 918 (1174)
T ss_pred HHHHHHhhcccchHHHHHhHHHHh
Confidence 554444444444444333333333
No 38
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.13 E-value=0.0073 Score=56.20 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=7.4
Q ss_pred HhHHHHHHHHHHHHHHh
Q psy1411 152 SRKLAFVEDELEVAEDR 168 (270)
Q Consensus 152 ~~~~~~l~~~l~~~e~r 168 (270)
..++..++..+.+|..+
T Consensus 121 EerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 121 EERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 39
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.08 E-value=7.1e-07 Score=85.96 Aligned_cols=175 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 22 ADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101 (270)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~ 101 (270)
+..++..+.++...+......+..+......+...+.++...+...+..+..+.+....+...+..+...++.-......
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 33334444444444444444444444444445555555555555555555555554445555555554444444433333
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH---------------HHhHHHHHHHHHHHHH
Q psy1411 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE---------------VSRKLAFVEDELEVAE 166 (270)
Q Consensus 102 ~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e---------------~~~~~~~l~~~l~~~e 166 (270)
+...+..+..++..+...+..-......+...+..+...+.....+|+. +..++..+...+....
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333333333333333232222222211 1223344444444444
Q ss_pred HhhHhHHHHHHHHHHHHHHHhhhHhhHHHH
Q psy1411 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVS 196 (270)
Q Consensus 167 ~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 196 (270)
..+..++.....|...+..+...|......
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555544444443
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.05 E-value=0.019 Score=58.10 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVK 55 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (270)
++.++..+...+..+......++..+......+..+...+..+...+.....
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQ 656 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4445555555554444444444444444444444433333333333333333
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.03 E-value=0.0046 Score=50.21 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 66 ~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
.+-.+..++..++......+..+...+..+...+..+...++.+..+...++..+..+...+..++..+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566655555555555555555555554444444444444444444444444444444443
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.99 E-value=0.016 Score=54.87 Aligned_cols=70 Identities=7% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHhHhhHHhHHHHHHHHHHHHHHHHhH-------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 11 MKMEKDSAMDKADTCEGQAKDANLRADK-------VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 11 l~~e~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
|..++..+...+...+..-.+++.++.. +..++..++.....++.++..+......=...+..+++|+..
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333 333344444444444444444444433333333444433333
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.98 E-value=0.015 Score=54.24 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHhh
Q psy1411 4 IKKKMQAMKMEKDS 17 (270)
Q Consensus 4 i~~kl~~l~~e~~~ 17 (270)
|-.+|..++..+..
T Consensus 254 i~~~i~~l~~~i~~ 267 (569)
T PRK04778 254 IEKEIQDLKEQIDE 267 (569)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444444
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.98 E-value=0.006 Score=49.58 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV 169 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~ 169 (270)
+...|...++.+......++..+..+......+...+..+..++..++..+.....++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555444433
No 45
>KOG4674|consensus
Probab=97.93 E-value=0.035 Score=56.85 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER-------EKALAAAESEVAALNR 76 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~e~~~~~l~~ 76 (270)
+.++|..+...++.....+..++..+..+...+..+......+...+..+....+.+ ..+...+...+.....
T Consensus 57 ~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ 136 (1822)
T KOG4674|consen 57 LEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKA 136 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666554444444333333333222222 2222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh--
Q psy1411 77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEAN-------RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK-- 147 (270)
Q Consensus 77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~-------~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~-- 147 (270)
.+..+..++..+...+......+.+++....... .....+......+.....-+...|..-...+....+.
T Consensus 137 ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s 216 (1822)
T KOG4674|consen 137 ELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHS 216 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444433333333333333332 2333334444444444444444444444444444444
Q ss_pred --HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHH
Q psy1411 148 --SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSE 197 (270)
Q Consensus 148 --~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 197 (270)
+..+..++..+...+......+..+..+...|...+......+..+....
T Consensus 217 ~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~ 268 (1822)
T KOG4674|consen 217 IEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTA 268 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555566666666666666666666666666666666666666555543
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.90 E-value=0.023 Score=53.82 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~ 183 (270)
..++.++..+...+...+.++..|+..+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 47
>PRK11637 AmiB activator; Provisional
Probab=97.90 E-value=0.016 Score=52.04 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 211 IKQLAVKLKEAEARAEFAEKTVKKLQKEV 239 (270)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~e~~~~~l~e~~ 239 (270)
+..+..........+..+......+...|
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 48
>KOG0964|consensus
Probab=97.90 E-value=0.024 Score=54.09 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy1411 95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA 137 (270)
Q Consensus 95 ~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~ 137 (270)
....+..+...+.+...++..+.-.+..+.++-..+..++..+
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l 368 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKL 368 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444433
No 49
>KOG0994|consensus
Probab=97.89 E-value=0.028 Score=54.56 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHH
Q psy1411 76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL 155 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~ 155 (270)
..+......|..+++........+..+-..+.+++..+..|+............++.....+...+..++..+..+...+
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444455555555555544444444444444444444444444444443333333
Q ss_pred HH
Q psy1411 156 AF 157 (270)
Q Consensus 156 ~~ 157 (270)
+.
T Consensus 1671 ~~ 1672 (1758)
T KOG0994|consen 1671 EL 1672 (1758)
T ss_pred HH
Confidence 33
No 50
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.86 E-value=3.1e-06 Score=81.63 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhHh
Q psy1411 150 EVSRKLAFVEDELEVAEDRVKS 171 (270)
Q Consensus 150 e~~~~~~~l~~~l~~~e~r~~~ 171 (270)
++.+.+..+..++..|..+++.
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555566666666555544
No 51
>KOG0977|consensus
Probab=97.83 E-value=0.023 Score=51.62 Aligned_cols=139 Identities=21% Similarity=0.292 Sum_probs=89.7
Q ss_pred HHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhH---------------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK---------------VEVDLDTTKKNLDQAVKDLEEREKALAAAES 69 (270)
Q Consensus 5 ~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 69 (270)
|+.|..|-..+...-++.--++.+-..+...+.. ...++..++..+++.......+...+..+..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6677777777777777777777776666665554 3445677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411 70 EVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED 143 (270)
Q Consensus 70 ~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~ 143 (270)
++..+..+.......+......+......+..++..+.-+.+.++.++..+..+..+...+...|..++..++.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77777777777666666666666655555555555555555555555555555555555555555555544433
No 52
>PRK09039 hypothetical protein; Validated
Probab=97.83 E-value=0.014 Score=50.60 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSG 93 (270)
Q Consensus 78 ~~~le~el~~~~~~l~ 93 (270)
...++..+..+..++.
T Consensus 76 ~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 76 NQDLQDSVANLRASLS 91 (343)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3333334433333333
No 53
>KOG0933|consensus
Probab=97.74 E-value=0.047 Score=52.44 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=6.7
Q ss_pred hHhhHHhHHHHHHHHHHH
Q psy1411 14 EKDSAMDKADTCEGQAKD 31 (270)
Q Consensus 14 e~~~~~~~~~~~~~~l~~ 31 (270)
++......++.++..+..
T Consensus 685 ~~~~~q~el~~le~eL~~ 702 (1174)
T KOG0933|consen 685 ELRAIQKELEALERELKS 702 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.68 E-value=0.048 Score=50.86 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANL 34 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~ 34 (270)
.+...+..+..++..+...-..-...+..+..
T Consensus 116 ~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~ 147 (569)
T PRK04778 116 LIEEDIEQILEELQELLESEEKNREEVEQLKD 147 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 55
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.68 E-value=0.028 Score=48.19 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS 88 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~ 88 (270)
..++.++..++.....+..+.+....++.......+.+..++..+
T Consensus 84 r~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a 128 (499)
T COG4372 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAA 128 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 56
>KOG4643|consensus
Probab=97.63 E-value=0.069 Score=51.29 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=49.0
Q ss_pred ChH--HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHH--hHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 1 MDA--IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRA--DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNR 76 (270)
Q Consensus 1 ~~~--i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~ 76 (270)
||. +|-+++.|+.+=..+.+.-.-++.++..++.+- ..++.++=.++..+..+..+....+.++.++--+...+..
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 455 788888888876677666667777777776655 4455555555555555555555555555555444444444
Q ss_pred HHHHH
Q psy1411 77 KVQMI 81 (270)
Q Consensus 77 r~~~l 81 (270)
.-.+|
T Consensus 337 q~eqL 341 (1195)
T KOG4643|consen 337 QKEQL 341 (1195)
T ss_pred HHHHh
Confidence 33333
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.62 E-value=0.029 Score=46.85 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l 235 (270)
..+-.+++.+...+..+-.++..|.......+..+-.+-...+.+....+.+...+..+..........+..+...+..+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444334444444444444444444444444444444444444444
Q ss_pred HHHHHHHH
Q psy1411 236 QKEVDRLE 243 (270)
Q Consensus 236 ~e~~~~le 243 (270)
...+..+.
T Consensus 241 ~k~ik~l~ 248 (294)
T COG1340 241 EKKIKALR 248 (294)
T ss_pred HHHHHHHH
Confidence 44443333
No 58
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.52 E-value=0.15 Score=52.43 Aligned_cols=32 Identities=6% Similarity=0.110 Sum_probs=13.1
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADK 38 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~ 38 (270)
+|..|..++..+......+...+..+..+...
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~ 774 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRA 774 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.43 E-value=0.18 Score=51.29 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411 204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267 (270)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~ 267 (270)
+..+...+.........+......+......++.........+..+......+...++.+...|
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555555555555555566666666666666666666666665555443
No 60
>KOG0018|consensus
Probab=97.41 E-value=0.14 Score=49.64 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 219 ~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
......+......+..+...+..+...+...+..++++..+...++.
T Consensus 852 ~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 852 EKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34444455555555555666666666666666666666666665554
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.41 E-value=0.11 Score=48.32 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=5.3
Q ss_pred hhhhhhHHHHHHHH
Q psy1411 118 NRSQQDEERMDQLT 131 (270)
Q Consensus 118 ~~~~~~e~~~~~le 131 (270)
.++..+..+++..+
T Consensus 408 ~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 408 QRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 62
>KOG4674|consensus
Probab=97.36 E-value=0.24 Score=51.15 Aligned_cols=228 Identities=13% Similarity=0.145 Sum_probs=126.8
Q ss_pred HHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 8 MQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK 87 (270)
Q Consensus 8 l~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~ 87 (270)
+..+..+...+...++.....+..+......+..+-+.+...+.....++..+...+..+..++..+......++..+..
T Consensus 89 L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e 168 (1822)
T KOG4674|consen 89 LEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQE 168 (1822)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444455555555555555555555555555555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH----HHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411 88 SEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ----LKEARLLAEDADAKSDEVSRKLAFVEDELE 163 (270)
Q Consensus 88 ~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~----l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~ 163 (270)
+...--..+-+...+.....-+.....-|...+....+.+..++.. ..++...+..+...|.++...+.++.....
T Consensus 169 ~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~ 248 (1822)
T KOG4674|consen 169 TQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNE 248 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666666666666666666 556666666666667676777777777777
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 164 VAEDRVKSGDAKIMELEEELKVVGNSLK----SLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235 (270)
Q Consensus 164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l 235 (270)
.+...++..-..+..+-.........+. ......+-+......+......+...+..+..-++++...+...
T Consensus 249 eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~ 324 (1822)
T KOG4674|consen 249 ELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKEN 324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777666666666665555444433322 22222222333334444444444444444444444444444333
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.36 E-value=0.24 Score=51.10 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE 82 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le 82 (270)
-|..++..|..+++.+... ..+..........+..+...+..+...+......+..+...+.....++..+...+..+.
T Consensus 318 ELe~rL~kLEkQaEkA~ky-leL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555555332 222222112223333444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 83 EDLEKSEERSGTATAKLAEASQ 104 (270)
Q Consensus 83 ~el~~~~~~l~~~~~~l~~~e~ 104 (270)
..+..+...+...+..+.....
T Consensus 397 eqLaelqqel~elQ~el~q~qq 418 (1486)
T PRK04863 397 SQLADYQQALDVQQTRAIQYQQ 418 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 64
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.32 E-value=0.089 Score=45.26 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK 87 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~ 87 (270)
...+.+......++..+.....+..+.+..+...-..+..++..
T Consensus 112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333333333333333333333333
No 65
>KOG0018|consensus
Probab=97.31 E-value=0.19 Score=48.81 Aligned_cols=92 Identities=20% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~ 233 (270)
.+.++..+...-...+.....+-.++++++..+...+..+......+......+......+...+..+............
T Consensus 382 el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~ 461 (1141)
T KOG0018|consen 382 ELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPY 461 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q psy1411 234 KLQKEVDRLEDE 245 (270)
Q Consensus 234 ~l~e~~~~le~~ 245 (270)
.+...+......
T Consensus 462 e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 462 ELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 66
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.24 E-value=0.091 Score=43.92 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAE 229 (270)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 229 (270)
++..+......+......+....+.+...+..+.....+++..++.+-
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444333
No 67
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.22 E-value=0.095 Score=43.64 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 55 KDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD 107 (270)
Q Consensus 55 ~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~ 107 (270)
..++....+++.+..+...+..++..-...-++++..++....++..+-...+
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444444444444444444444444444444444444444444333
No 68
>PRK11281 hypothetical protein; Provisional
Probab=97.09 E-value=0.38 Score=48.17 Aligned_cols=23 Identities=4% Similarity=-0.002 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 207 YKRQIKQLAVKLKEAEARAEFAE 229 (270)
Q Consensus 207 ~~~~~~~l~~~~~~~~~~~~~~e 229 (270)
....+..+..+...+...++.+.
T Consensus 297 ~t~~~~~l~~~~~~~~~~l~~~~ 319 (1113)
T PRK11281 297 ATEKLNTLTQQNLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.09 E-value=0.071 Score=39.74 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=16.2
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTK 47 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 47 (270)
++...+.+.+.+.+++..++..+...+.....+..+..+.+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k 51 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSK 51 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33334444444444444444444433333333333333333
No 70
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.04 E-value=0.33 Score=46.53 Aligned_cols=119 Identities=21% Similarity=0.305 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhH
Q psy1411 69 SEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148 (270)
Q Consensus 69 ~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~ 148 (270)
.++..+..-...++..+..+...++....++.+.+..+.++...+..+......++.++.........+...+..+..++
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33333333334444444444444444444444444444444444444444444444444444444444444444444445
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q psy1411 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVG 187 (270)
Q Consensus 149 ~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~ 187 (270)
..+..++..|+.++..-..-...+..+-..|+.++....
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 555555555555555554444444444444444444443
No 71
>KOG0980|consensus
Probab=97.01 E-value=0.34 Score=46.21 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMD 128 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~ 128 (270)
.++.++.+..+...+...-..+-.....+..+++..+....+.++....+...+..+..+..
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444433333333333333333333333
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.00 E-value=0.086 Score=39.14 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=63.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 18 AMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATA 97 (270)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~ 97 (270)
+......+......+......+..++.........++..+..--......-..+..+......+...+..+......+..
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555566666666666666666666555555555666666666666666666666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411 98 KLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133 (270)
Q Consensus 98 ~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~ 133 (270)
.+...+..|. .....++..+..+...++.+..+
T Consensus 88 ~l~~~e~sw~---~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 88 ELEESEASWE---EQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655554 23344444444444444444433
No 73
>KOG4673|consensus
Probab=96.94 E-value=0.33 Score=45.02 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 149 ~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~ 183 (270)
+.+.++-..+.+++.++.+|+..++.+-..+...+
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33456667777777777777777777766655443
No 74
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.94 E-value=0.097 Score=38.87 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=33.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~ 184 (270)
.+..+......+...+..+......+...+......+.+ +-..++.++..+..|+..+..+-.-|-.+++
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444422 3345555555555555555555555544444
No 75
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.94 E-value=0.14 Score=40.85 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Q psy1411 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE 205 (270)
Q Consensus 126 ~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 205 (270)
.+..+-...+.+...+..+...+..+.+++..+..-+..+...-+.+...+.....++......+..+.... ..++.
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA---eekL~ 146 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA---EEKLE 146 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333333334444455555555666667777777777777777778888888888888888887777776642 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q psy1411 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268 (270)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~ 268 (270)
.....+..+.. .+...+..+...+.+.+-.+..++..+..-......+..-+|.+++.++
T Consensus 147 ~ANeei~~v~~---~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 147 KANEEIAQVRS---KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444433 4455666677788888888888888888888888888888888888764
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.92 E-value=0.13 Score=40.10 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193 (270)
Q Consensus 114 ~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~ 193 (270)
..++.....+...|..+...........+.+.+.+.++......+...+...+.-+-.-+.-+.+-...+..+..-+.++
T Consensus 91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy 170 (193)
T PF14662_consen 91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEY 170 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333333333333334444444444444444444444444444444444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1411 194 EVSEEKANQRVEEYKRQI 211 (270)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~ 211 (270)
......+...+..+++.+
T Consensus 171 ~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 171 RSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554444444444
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.90 E-value=0.27 Score=43.37 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS 103 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e 103 (270)
+..+..+......+.........++.++..+...+..++..+-.....+..+...|..+.
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 333434444444444444444444444444444444444444444433333333333333
No 78
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.82 E-value=0.43 Score=44.49 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=33.4
Q ss_pred hHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1411 169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG 247 (270)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~ 247 (270)
...+..++..+......+...+.....+-..+...+..+...+..+..........+..+...-...+..+..+...++
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333444444444444444444444444444444333333333333333333
No 79
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.77 E-value=0.031 Score=53.64 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy1411 230 KTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266 (270)
Q Consensus 230 ~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~ 266 (270)
..+..++..+..++.+..++..-+.....++-..+..
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ 642 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYS 642 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555555544443
No 80
>KOG4643|consensus
Probab=96.76 E-value=0.59 Score=45.29 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=22.7
Q ss_pred hHHHHHhHHHHHHH-------HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 147 KSDEVSRKLAFVED-------ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 147 ~~~e~~~~~~~l~~-------~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
.|++...+.-.++. ++..+++++..+..+...++..-..+..+++.+..
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444433333 34444445554444444444444444444444433
No 81
>KOG0976|consensus
Probab=96.76 E-value=0.52 Score=44.56 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 230 KTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 230 ~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
..+..+++.....+..++.+..-.+....++|...+
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.72 E-value=0.92 Score=46.87 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANL 34 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~ 34 (270)
|..+|..|..++..+......+...+..+..
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.66 E-value=0.17 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1411 72 AALNRKVQMIEEDLEKSE 89 (270)
Q Consensus 72 ~~l~~r~~~le~el~~~~ 89 (270)
+++..++..++.++....
T Consensus 20 dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQ 37 (140)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 84
>KOG4673|consensus
Probab=96.65 E-value=0.57 Score=43.53 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLK-SLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237 (270)
Q Consensus 159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e 237 (270)
...+.++..++..++.+...++...+.+...+. .-....+.+......|-..+..+...+...+..+. ..-.-++.
T Consensus 536 ~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aa---rrEd~~R~ 612 (961)
T KOG4673|consen 536 KDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAA---RREDMFRG 612 (961)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333444445555555555555555555555442 22223334444555555555555554444333222 22334466
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q psy1411 238 EVDRLEDELGLNKDRYKSLADE 259 (270)
Q Consensus 238 ~~~~le~~l~~~~~~~~~~~~e 259 (270)
.+..|..+++..+.+...+..+
T Consensus 613 Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666655443
No 85
>KOG0612|consensus
Probab=96.63 E-value=0.83 Score=45.27 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy1411 207 YKRQIKQLAV 216 (270)
Q Consensus 207 ~~~~~~~l~~ 216 (270)
+.....-+..
T Consensus 726 i~~e~e~L~~ 735 (1317)
T KOG0612|consen 726 IEAELEYLSN 735 (1317)
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 86
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.61 E-value=0.34 Score=40.55 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy1411 77 KVQMIEEDLEKSE 89 (270)
Q Consensus 77 r~~~le~el~~~~ 89 (270)
+...+...+..+.
T Consensus 88 ~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 88 RAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 87
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.59 E-value=0.35 Score=40.39 Aligned_cols=227 Identities=16% Similarity=0.180 Sum_probs=108.7
Q ss_pred HhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1411 36 ADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115 (270)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~ 115 (270)
+.....++..+.....-+...+..-......++.++.+...|+...-.+.+.....-..+.-.+......|--+. ..
T Consensus 58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lq---dk 134 (305)
T PF14915_consen 58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQ---DK 134 (305)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHH---HH
Confidence 334455555555555555566655555556666666666666665555555444443333333333333332222 11
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 116 l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
+...+..+.+.-+.+..+|..+...+..+..+++...--+..-.--+..+.+.+..+..++.+++.-...-...+..+-.
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 12222222333333333333333333333333332222222222223333444444444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHH
Q psy1411 196 SEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG--------LNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~--------~~~~~~~~~~~eld~~~~ 265 (270)
..+-+..++..+...-.-+.+++..+.......+..+..++.....+-..++ -++.+-..+-.+++++..
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE 292 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE 292 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555666666666666677777777777766666666666655533333322 234444444455555444
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.54 E-value=0.27 Score=38.42 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=37.2
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEA 223 (270)
Q Consensus 144 ~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 223 (270)
++++...+...+..+..+...+....+.+..++..|......+...+-.++.-.-.-..........+..+..-+.+...
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~ 172 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRS 172 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444333332222222233333333333333333333
Q ss_pred HHHHHHHHHHHHHHH
Q psy1411 224 RAEFAEKTVKKLQKE 238 (270)
Q Consensus 224 ~~~~~e~~~~~l~e~ 238 (270)
-...+..++..|.+.
T Consensus 173 ~teeLR~e~s~LEeq 187 (193)
T PF14662_consen 173 ITEELRLEKSRLEEQ 187 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343444444333
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.46 E-value=0.32 Score=38.56 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 198 EKANQRVEEYKRQIKQLAVKLKEA 221 (270)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~ 221 (270)
..+......+...+..+...+.+.
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 90
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.41 E-value=0.33 Score=38.00 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVE-VDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 2 ~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
-.-...|..++-..-.+...+..+...+...+.-...+. -++..++-....+...+.+-...+..+...+...-.-+..
T Consensus 2 ~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 2 RQKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555554444455555555555554444333332 3555555555555555555444444444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-----hHhhhhHHHHHhHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLA-----EDADAKSDEVSRKL 155 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~-----~~~~~~~~e~~~~~ 155 (270)
+...+..+.. ....+...+......+..+...+..+....+.+......++... ..+-.-|......+
T Consensus 82 ~keKl~~~~~-------~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~ 154 (177)
T PF13870_consen 82 VKEKLHFLSE-------ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEV 154 (177)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3333333333 33334444444444444444444444444444444444333322 22222344445555
Q ss_pred HHHHHHHHHHHHhhHhHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKI 176 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~ 176 (270)
..+...+..|..++..++.++
T Consensus 155 ~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 155 EELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 666666777777666666554
No 91
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.35 E-value=0.9 Score=42.43 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=46.8
Q ss_pred hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221 (270)
Q Consensus 142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (270)
......+.++...+..+..++...-..++--..++..++.++..+..-...+...++.+-.....+...+..+.. .
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~----~ 344 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD----S 344 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC----C
Confidence 333444444444555555555555555444445555555555555554444443444444434443333333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELGLN 249 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~ 249 (270)
...+..++.++..+...+..+-..+...
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444444444444433
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.28 E-value=1.2 Score=43.19 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy1411 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDR 168 (270)
Q Consensus 126 ~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r 168 (270)
.+..++.++..+...+..+...|...+-.+..+...+..+...
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333444444444444443
No 93
>KOG0999|consensus
Probab=96.28 E-value=0.84 Score=41.38 Aligned_cols=42 Identities=19% Similarity=0.037 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHH
Q psy1411 90 ERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLT 131 (270)
Q Consensus 90 ~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le 131 (270)
.-+.+..++-...-..+-+++.+++.+.+.+.....+.+.+.
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555554444444443
No 94
>KOG0976|consensus
Probab=96.24 E-value=1.1 Score=42.45 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 69 SEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD 107 (270)
Q Consensus 69 ~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~ 107 (270)
.....|..+...|.+++...+..+...+..++.......
T Consensus 270 E~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t 308 (1265)
T KOG0976|consen 270 EKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRT 308 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555554444433
No 95
>KOG0946|consensus
Probab=96.13 E-value=1.3 Score=42.10 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG 93 (270)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~ 93 (270)
+.-++..+.+...++.-....+..++........++.+.++.+..+++
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333334444444444444444444444444444444444
No 96
>PRK11281 hypothetical protein; Provisional
Probab=96.08 E-value=1.8 Score=43.46 Aligned_cols=10 Identities=10% Similarity=0.468 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q psy1411 4 IKKKMQAMKM 13 (270)
Q Consensus 4 i~~kl~~l~~ 13 (270)
|+++|+.+.+
T Consensus 41 iq~~l~~~~~ 50 (1113)
T PRK11281 41 VQAQLDALNK 50 (1113)
T ss_pred HHHHHHHhhc
Confidence 5555555543
No 97
>KOG0980|consensus
Probab=96.01 E-value=1.5 Score=41.96 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=56.4
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411 100 AEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179 (270)
Q Consensus 100 ~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l 179 (270)
-..+.....+......+......+-...++.-.++.-......+.++...++...+..+.+....|+...+.....+..+
T Consensus 420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333344444444444445555555555555555556666666666677777777777777777666666666
Q ss_pred HHHHHHHhhhHhhHHHH
Q psy1411 180 EEELKVVGNSLKSLEVS 196 (270)
Q Consensus 180 ~~~~~~~~~~l~~~~~~ 196 (270)
..++.-+..+++.+...
T Consensus 500 ~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 500 RQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665554
No 98
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.97 E-value=0.9 Score=38.92 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=28.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy1411 189 SLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLA 257 (270)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~ 257 (270)
.+..+......+...+..|.+.+..+...+.....-......++......+..++.+-..+..++....
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n 271 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSN 271 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444444444444444444444444444444444444444444444433333
No 99
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.83 E-value=0.0023 Score=61.14 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
+...+..++..+..+...++....++..+..++..+..++..+..+...+......+.+.+
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666665555555444444433
No 100
>KOG0249|consensus
Probab=95.69 E-value=1.9 Score=40.49 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy1411 101 EASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180 (270)
Q Consensus 101 ~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~ 180 (270)
.++..++.-+..+-..+.+...++..++.++..+-..- . -..+++++.++..--..+.-.+.+......++..+.
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~---r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~ 169 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSL---R--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLE 169 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHH---h--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33344444444555555666666666666666554211 1 223444444444444444444555555555555666
Q ss_pred HHHHHHhhhHhhHHH
Q psy1411 181 EELKVVGNSLKSLEV 195 (270)
Q Consensus 181 ~~~~~~~~~l~~~~~ 195 (270)
..++.++.+|..+..
T Consensus 170 ~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 170 EQLEELNAELQRARQ 184 (916)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555444
No 101
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.57 E-value=0.0033 Score=60.17 Aligned_cols=19 Identities=16% Similarity=-0.101 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy1411 247 GLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 247 ~~~~~~~~~~~~eld~~~~ 265 (270)
.+++.+..-+..+++.+.+
T Consensus 402 ~RLerq~~L~~kE~d~LR~ 420 (722)
T PF05557_consen 402 RRLERQKALATKERDYLRA 420 (722)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333
No 102
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.54 E-value=1.1 Score=36.97 Aligned_cols=81 Identities=31% Similarity=0.369 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 56 DLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 56 ~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
.+..+......++.+...|..+...++.....+..........-..+...+.++...+..+......-..+...+...+.
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333344444444333
Q ss_pred H
Q psy1411 136 E 136 (270)
Q Consensus 136 ~ 136 (270)
.
T Consensus 114 ~ 114 (246)
T PF00769_consen 114 E 114 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.44 E-value=0.004 Score=59.57 Aligned_cols=74 Identities=31% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239 (270)
Q Consensus 162 l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~ 239 (270)
+.....++..++.+...+..+...+..++..... +...+..|...+..+...+.......+.+...+..+.+.+
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~ 400 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARA----LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKL 400 (713)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555333 3333444555555555555444444444444444444333
No 104
>KOG0946|consensus
Probab=95.43 E-value=2.5 Score=40.25 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhHhH
Q psy1411 154 KLAFVEDELEVAEDRVKSG 172 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~ 172 (270)
++..+..++...++.+..+
T Consensus 807 ~l~~~q~e~~~~keq~~t~ 825 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTL 825 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 105
>KOG0612|consensus
Probab=95.35 E-value=3.4 Score=41.24 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHHHHHHHhhh
Q psy1411 170 KSGDAKIMELEEELKVVGNS 189 (270)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~ 189 (270)
..+..++..|++........
T Consensus 626 ~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 626 AELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhH
Confidence 33333333333333333333
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.26 E-value=1.7 Score=37.25 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1411 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE----EDLEKSEERSGTATAKLAEASQAADEAN 110 (270)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le----~el~~~~~~l~~~~~~l~~~e~~~~~~~ 110 (270)
.+..+..+...+......+..-+..+......+..++..+......++ .++..+...+......+......+.++.
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555555555555544443 3556666666666666666666666666
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy1411 111 RMCKVLENRSQQDEERMDQLTNQLKEARLLA 141 (270)
Q Consensus 111 ~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~ 141 (270)
.++..+...+......+..+...+.++....
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665555444
No 107
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.24 E-value=0.55 Score=37.34 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411 89 EERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE 150 (270)
Q Consensus 89 ~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e 150 (270)
...+..+...+..+...+..+...+......+..+.+++..+...+..+...+..+..+..+
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444555544444444444444444443
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.16 E-value=2.6 Score=38.72 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 76 RKVQMIEEDLEKSEERSGTATAKLAEAS 103 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~~~l~~~e 103 (270)
.++..+...+..++.++....+.+..+.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 109
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.05 E-value=2.8 Score=38.51 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=9.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHh
Q psy1411 146 AKSDEVSRKLAFVEDELEVAEDR 168 (270)
Q Consensus 146 ~~~~e~~~~~~~l~~~l~~~e~r 168 (270)
..|.+-+-.+..+..++..+...
T Consensus 268 ~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 268 LRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred HHhcccChHHHHHHHHHHHHHHH
Confidence 33333333344444444444333
No 110
>KOG0995|consensus
Probab=94.90 E-value=3 Score=38.17 Aligned_cols=30 Identities=7% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
...+-.+......|++.+..+..-......
T Consensus 431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~ 460 (581)
T KOG0995|consen 431 SEELHEAENELETLQEHFSNKASTIEEKIQ 460 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.89 E-value=2.1 Score=36.31 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=9.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q psy1411 241 RLEDELGLNKDRYKSLADEMDSTF 264 (270)
Q Consensus 241 ~le~~l~~~~~~~~~~~~eld~~~ 264 (270)
.+..++..+.-++..+..-+....
T Consensus 273 ~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 273 QLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333333
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.82 E-value=1.9 Score=35.61 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l 235 (270)
..|...+..++.....++.....+......+..........-..+...+..+...+..+.............+...+...
T Consensus 36 ~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 36 EELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333332222222333334444444444443333333333333333333
Q ss_pred H
Q psy1411 236 Q 236 (270)
Q Consensus 236 ~ 236 (270)
+
T Consensus 116 r 116 (246)
T PF00769_consen 116 R 116 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 113
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.81 E-value=2.3 Score=36.39 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHh
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV 39 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~ 39 (270)
.+.+.|+..+.|.+....-++.++.....+...+..+
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el 49 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYREL 49 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888777777776666665554433
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.75 E-value=0.79 Score=36.44 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=30.7
Q ss_pred hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221 (270)
Q Consensus 142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (270)
..+.+...++..++..+...+...+..+......+..+...+..+...+..+... +......+..+..++..+
T Consensus 84 ael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~-------l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 84 AELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE-------LKEKNKANEILQDELQAL 156 (194)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444433333332 233333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELG 247 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~ 247 (270)
.-.+..++..+..+......|-.++-
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544443
No 115
>KOG0963|consensus
Probab=94.73 E-value=3.5 Score=38.13 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=42.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH----HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhH
Q psy1411 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE----VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSL 190 (270)
Q Consensus 115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e----~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l 190 (270)
.+..++..++..+..+...+......+......|++ ....+..+-.++++...++..++.+...|..++...+...
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444445555555544444444444444444222 2223445556666677777777777777776666666555
Q ss_pred hhH
Q psy1411 191 KSL 193 (270)
Q Consensus 191 ~~~ 193 (270)
...
T Consensus 273 ~~~ 275 (629)
T KOG0963|consen 273 KLA 275 (629)
T ss_pred hhc
Confidence 443
No 116
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.62 E-value=2.6 Score=36.09 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHH
Q psy1411 48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSE--------------ERSGTATAKLAEASQAADEANRMC 113 (270)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~--------------~~l~~~~~~l~~~e~~~~~~~~~~ 113 (270)
+++.-+...+...+.+.+.+..-++.+..+...+......+. ..-..+..-+...+.....+..++
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555554443333 122233344445555555555566
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy1411 114 KVLENRSQQDEERMDQLTNQLKEARLL 140 (270)
Q Consensus 114 ~~l~~~~~~~e~~~~~le~~l~~~~~~ 140 (270)
..|..++.++...+--++..+...+..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 666666666666666666666544433
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.47 E-value=3.4 Score=36.82 Aligned_cols=9 Identities=0% Similarity=-0.082 Sum_probs=3.3
Q ss_pred HHHHHHhHh
Q psy1411 8 MQAMKMEKD 16 (270)
Q Consensus 8 l~~l~~e~~ 16 (270)
+..+..++.
T Consensus 83 l~~l~~~~~ 91 (423)
T TIGR01843 83 AAELESQVL 91 (423)
T ss_pred HHHHHHHHH
Confidence 333333333
No 118
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.45 E-value=2.2 Score=34.59 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 20 DKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAA 67 (270)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (270)
+...-+...+.+++..+..+...+.........+..++..+...+...
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555554444444444444444444444444443333
No 119
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.38 E-value=5.2 Score=38.64 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
.+..++..+......++..+......+..+...+.+....+..+..++..+......++.++..+.+....+...+.
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444444444444444444444444444444444444444444444444444444333333333333
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.22 E-value=3.2 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLE 86 (270)
Q Consensus 71 ~~~l~~r~~~le~el~ 86 (270)
+..+..+...+..++.
T Consensus 174 ~~~l~~~~~~L~~e~~ 189 (312)
T smart00787 174 KPKLRDRKDALEEELR 189 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 121
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.96 E-value=2.2 Score=32.69 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSG 172 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~ 172 (270)
.+..+..+...+....+.++..+..+...+..++.-.....--+..+.+++..+...++.+
T Consensus 92 ~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 92 RLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333444444444444444443333333333333333333344444444444444433
No 122
>KOG0963|consensus
Probab=93.90 E-value=5.3 Score=36.98 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy1411 75 NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR 119 (270)
Q Consensus 75 ~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~ 119 (270)
..+...+.+....+..++..+...+..+...+......+..+...
T Consensus 181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 181 AEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 334444444455555555555555555555555544444444443
No 123
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.84 E-value=4.2 Score=35.61 Aligned_cols=124 Identities=10% Similarity=0.215 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q psy1411 128 DQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY 207 (270)
Q Consensus 128 ~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (270)
...+.-+.++..........+++....+..+..++...-+++..-+.- +..++..+-.++.........+..+....
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777778887878887777776666655554443 44466666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhHHHHHH
Q psy1411 208 KRQIKQLAVKLKEAEARAEFAEK-------------TVKKLQKEVDRLEDELGLNKDRYK 254 (270)
Q Consensus 208 ~~~~~~l~~~~~~~~~~~~~~e~-------------~~~~l~e~~~~le~~l~~~~~~~~ 254 (270)
...+..+...+..+...++.... -+..+...+.++..++....++.+
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66666666666666666665552 334455555666666655555543
No 124
>PRK10869 recombination and repair protein; Provisional
Probab=93.76 E-value=5.9 Score=36.98 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=52.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225 (270)
Q Consensus 146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (270)
..+.++...+..+...+...-..+.--..++..+++++..+..-...+...++++-...+.+...+..+. .....+
T Consensus 268 ~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~----~~e~~l 343 (553)
T PRK10869 268 DMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD----DQEDDL 343 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CCHHHH
Confidence 3334444444444444444444444444455556666655555555444444443333333333333322 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHH
Q psy1411 226 EFAEKTVKKLQKEVDRLEDELGLNKDR-YKSLADEMDSTFAE 266 (270)
Q Consensus 226 ~~~e~~~~~l~e~~~~le~~l~~~~~~-~~~~~~eld~~~~~ 266 (270)
..++.++..+...+..+-..++..+.+ ...+...+...+.+
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444444443 23333344433333
No 125
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.71 E-value=3.6 Score=34.37 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1411 45 TTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116 (270)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l 116 (270)
..+..+..++..+..+...+..+...+.....+...+......+-.+...+...+..+...+..+-..+..+
T Consensus 42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444444444444444444444444444444444444444444444444443333333
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.63 E-value=3.1 Score=33.30 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 151 VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 151 ~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
+..++..++..+..+.-..+.+..+...+..+++.+...+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555554444
No 127
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.57 E-value=2.6 Score=32.27 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=60.3
Q ss_pred HhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 141 AEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS-EEKANQRVEEYKRQIKQLAVKLK 219 (270)
Q Consensus 141 ~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 219 (270)
.+.+..+++.+.+.+..+...+...-..++.++..-...-.++..+...+..+... .-.+-..-..+.-.+..+..+-.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555555555555555555555433221 11122223344444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 220 EAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 220 ~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
.++.+-+.++..+..+...+...+.-+.+..+-..-+...+.+...
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555555555555555555555555555555555555555544443
No 128
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.54 E-value=3.6 Score=33.85 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
++..++..+.....+.+-...+...+..++..+...+..+..
T Consensus 165 ~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~ 206 (240)
T PF12795_consen 165 QIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQN 206 (240)
T ss_pred HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 129
>KOG0999|consensus
Probab=93.47 E-value=6 Score=36.17 Aligned_cols=184 Identities=15% Similarity=0.223 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhHhhHH-hHHHHHHHHH------HHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy1411 2 DAIKKKMQAMKMEKDSAM-DKADTCEGQA------KDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE------ 68 (270)
Q Consensus 2 ~~i~~kl~~l~~e~~~~~-~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e------ 68 (270)
+.++..|..|..+++... +.+.+++-.+ ..+.+++..++..++.++.++......+-..........
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~ 90 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEER 90 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 445666677776666653 2333333322 234446666666677776666666555544443322210
Q ss_pred --HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy1411 69 --SEV-------AALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARL 139 (270)
Q Consensus 69 --~~~-------~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~ 139 (270)
.-+ ..+..+|-.++.++..++..+...++..+.+.... ..+......++...-.++..+++..+
T Consensus 91 EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~-------sd~~e~~~~~E~qR~rlr~elKe~Kf 163 (772)
T KOG0999|consen 91 EESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVH-------SDLKESNAAVEDQRRRLRDELKEYKF 163 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhcchhhHHHHHHHHHHHHHHHH
Confidence 111 12223333344444444444333333333333322 23333333344444444444444444
Q ss_pred HHhHhhhhHHHHHhHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411 140 LAEDADAKSDEVSRKL---AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192 (270)
Q Consensus 140 ~~~~~~~~~~e~~~~~---~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~ 192 (270)
.-..+=..|.++.... +..-+.|....=..+.+.-.++.|++...-++..+..
T Consensus 164 RE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 164 REARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444433332 3333333334444555555666666666666655544
No 130
>KOG1853|consensus
Probab=93.45 E-value=3.6 Score=33.59 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHH
Q psy1411 76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL 155 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~ 155 (270)
....++.+++..+.+--.++.+. ++.++..++.+...++.....+...+.......+. .+-...+..
T Consensus 27 q~f~~~reEl~EFQegSrE~Eae----------lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~ 93 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAE----------LESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQE 93 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33444555555555544444422 22344444444444444444444444322333222 233335566
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (270)
..|+.++.-.-.-.+.+...|.+|+..-+.+...-..-....+++..++....+....++.++.+-+.-+..+
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv 166 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV 166 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7778888888888888888888888777777766665556677777788888888888888777665555443
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.33 E-value=3.9 Score=35.17 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=0.0
Q ss_pred hHhhHHHHH
Q psy1411 39 VEVDLDTTK 47 (270)
Q Consensus 39 ~~~~~~~~~ 47 (270)
+..+.+.+.
T Consensus 21 ~~~E~~~Y~ 29 (314)
T PF04111_consen 21 AEKERDTYQ 29 (314)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 132
>KOG0978|consensus
Probab=93.08 E-value=8.2 Score=36.64 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237 (270)
Q Consensus 158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e 237 (270)
+....+-...++..++.+...+......+..++..+....+.......++...+..+...+......+..+...+..+..
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ 594 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELEL 594 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333433333333344444444444444444444433333333333333333
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.98 E-value=8.7 Score=36.65 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy1411 256 LADEMDSTFAE 266 (270)
Q Consensus 256 ~~~eld~~~~~ 266 (270)
+...+..+.+.
T Consensus 507 le~~~~~~f~~ 517 (650)
T TIGR03185 507 LEEEITKSFKK 517 (650)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 134
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.96 E-value=3.6 Score=32.13 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411 64 LAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED 143 (270)
Q Consensus 64 ~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~ 143 (270)
+..+.-+...+..++..=..++..+..........+.-....+..+......+...+......+..++..+..+......
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555554444433333
No 135
>KOG0978|consensus
Probab=92.74 E-value=9.2 Score=36.33 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=78.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225 (270)
Q Consensus 146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (270)
..+..+......+...+..+..-...+...+..++++...+......+......+...+..+......+...+..+...+
T Consensus 496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ 575 (698)
T KOG0978|consen 496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIEL 575 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666666666666666777777777777777666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 226 ~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
+.....+..++..+..+...+.-..-+..+++.++..+.-
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776666666666666655443
No 136
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.70 E-value=6.5 Score=34.47 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~ 165 (270)
......++....-...+...+......+..+...+...-+.+..-+..++ ..+..+-..|..+..++..+.......
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555666665555555555555555553 444444445544444444444444444
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 166 EDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
...+......+..+.++++.+...+.
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 137
>KOG0804|consensus
Probab=92.69 E-value=7 Score=34.80 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 140 LAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLK 219 (270)
Q Consensus 140 ~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (270)
.+......|..+......+..+..+++..-..++.+..++...+.....++......-..+....+.....+..++...+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444445555555566777777777777788888888888888888888877775544455555555555555554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 220 EAEARAEFAEKTVKKLQKEVDRLED 244 (270)
Q Consensus 220 ~~~~~~~~~e~~~~~l~e~~~~le~ 244 (270)
+ .....+..+..|++++.++--
T Consensus 428 ~---~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 428 E---ALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred H---HHHHHHHHHHHHHHHHHhHhe
Confidence 3 333445666666777666543
No 138
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.67 E-value=2.5 Score=29.70 Aligned_cols=61 Identities=11% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239 (270)
Q Consensus 179 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~ 239 (270)
+..++..+...+.......+.+....+.+...+..+..+......++..++..+..+...+
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444444444444444444444444443
No 139
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.64 E-value=1.9 Score=28.22 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176 (270)
Q Consensus 114 ~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~ 176 (270)
..|+.++..+-+.+..+...+..++..-..+......+......+..+...|..|+..+=.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444445555554444444444444445555556666666677777777776665544
No 140
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.43 E-value=13 Score=37.13 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Q psy1411 158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKR 209 (270)
Q Consensus 158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (270)
+...+..+...+.........+...+......+..+...+.++...+.....
T Consensus 366 l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 417 (908)
T COG0419 366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333344444444444444444444443333333333
No 141
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.38 E-value=14 Score=37.47 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q psy1411 3 AIKKKMQAMKM 13 (270)
Q Consensus 3 ~i~~kl~~l~~ 13 (270)
.|+++|+.+..
T Consensus 27 ~iq~~l~~~~~ 37 (1109)
T PRK10929 27 QITQELEQAKA 37 (1109)
T ss_pred HHHHHHHHhhc
Confidence 35555655543
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.28 E-value=2.9 Score=29.42 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 75 NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 75 ~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
..++..++..++......+++...-+.++.....+.........++..++..+..+...+
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333333333333334444444444444444444444444443
No 143
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.10 E-value=11 Score=35.54 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVA 72 (270)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~ 72 (270)
.+...+..+...+..+...++.+...+..+...+.........++.++.
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444
No 144
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.02 E-value=5 Score=31.64 Aligned_cols=111 Identities=10% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS 103 (270)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e 103 (270)
.++..|..-...+..++.++......+......+......+.-...........+..|..-+......+..+..-...+.
T Consensus 57 aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ 136 (188)
T PF05335_consen 57 AAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ 136 (188)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455554444444444444444444444444444444444444444444444444444443333333
Q ss_pred HHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 104 QAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
.++.+...-+.....+++.+...+...+..|
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 145
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.97 E-value=2.2 Score=27.31 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175 (270)
Q Consensus 122 ~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~ 175 (270)
-+.-+++.+...-..+.....++....+.+.++...+..+...|.+|+..+-.+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444455555556666667777788888888888888776443
No 146
>KOG0979|consensus
Probab=91.87 E-value=14 Score=36.42 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHhh
Q psy1411 156 AFVEDELEVAEDRV 169 (270)
Q Consensus 156 ~~l~~~l~~~e~r~ 169 (270)
..+...+.....++
T Consensus 293 s~~~~~~~e~~~k~ 306 (1072)
T KOG0979|consen 293 SQKQRELNEALAKV 306 (1072)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 147
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.45 E-value=13 Score=35.10 Aligned_cols=107 Identities=22% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238 (270)
Q Consensus 159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~ 238 (270)
+..+.++.-.+......++.|++........|+......+.+...+......+.........+...+..+...+..+...
T Consensus 253 en~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e 332 (786)
T PF05483_consen 253 ENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE 332 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444444444443333433333333333333333334444444444444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 239 VDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 239 ~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
...--..+.......+..-.++.....
T Consensus 333 Ke~~~Ee~nk~k~~~s~~v~e~qtti~ 359 (786)
T PF05483_consen 333 KEAQMEELNKAKAQHSFVVTELQTTIC 359 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.40 E-value=14 Score=35.61 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=3.5
Q ss_pred HHHHHHHhhH
Q psy1411 161 ELEVAEDRVK 170 (270)
Q Consensus 161 ~l~~~e~r~~ 170 (270)
.+..+..+++
T Consensus 647 ~l~~l~~si~ 656 (717)
T PF10168_consen 647 QLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=7.5 Score=32.34 Aligned_cols=61 Identities=8% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84 (270)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~e 84 (270)
..+..+..+......++.+++++...+..+...+.....++......+..++..|..++..
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444333333333
No 150
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.99 E-value=7.3 Score=31.51 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
.-+..-+.++...+..++..+.........++.++..+...+..++.+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666666666654
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.80 E-value=8.5 Score=31.94 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411 70 EVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133 (270)
Q Consensus 70 ~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~ 133 (270)
++..+.+-...|-+.++.++.....+...+..-+..+.-++..+......+..++.++..+...
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333333
No 152
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.80 E-value=8.2 Score=31.75 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
.+..+..+...+...+..+...+.
T Consensus 107 ~l~~~~~~p~~aq~~l~~~~~~l~ 130 (240)
T PF12795_consen 107 QLIEIQTRPERAQQQLSEARQRLQ 130 (240)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.59 E-value=8.3 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy1411 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266 (270)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~ 266 (270)
.|........+.+..+...+..++..+...+............+...+..+..++|....+
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444444444444444444433
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.38 E-value=8 Score=30.93 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy1411 44 DTTKKNLDQ 52 (270)
Q Consensus 44 ~~~~~~~~~ 52 (270)
.++..++..
T Consensus 30 ksLKeei~e 38 (201)
T PF13851_consen 30 KSLKEEIAE 38 (201)
T ss_pred HHHHHHHHH
Confidence 333333333
No 155
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.14 E-value=0.66 Score=39.55 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELK 184 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~ 184 (270)
..+..++..+...+-...-.+..|+.++.
T Consensus 122 ~~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 122 SALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 33333333333333333333333333333
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.07 E-value=5.8 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHH
Q psy1411 113 CKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 113 ~~~l~~~~~~~e~~~~~le~~l 134 (270)
+..+..++..+-.-++.....+
T Consensus 77 l~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHH
Confidence 3333333333333333333333
No 157
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=89.99 E-value=7.7 Score=30.16 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=24.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~ 148 (270)
....+..++..++..+.-++.+|..++..+..+...-
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er 94 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKER 94 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777777777776666555443
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.95 E-value=17 Score=34.06 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhHhh
Q psy1411 177 MELEEELKVVGNSLKS 192 (270)
Q Consensus 177 ~~l~~~~~~~~~~l~~ 192 (270)
..+...+..+..++..
T Consensus 325 e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQ 340 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 159
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.82 E-value=25 Score=35.74 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=2.1
Q ss_pred HHHHhH
Q psy1411 10 AMKMEK 15 (270)
Q Consensus 10 ~l~~e~ 15 (270)
.+...+
T Consensus 534 ~~~~~~ 539 (1047)
T PRK10246 534 ALEKEV 539 (1047)
T ss_pred HHHHHH
Confidence 333333
No 160
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.77 E-value=12 Score=31.99 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=44.6
Q ss_pred HHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 10 AMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSE 89 (270)
Q Consensus 10 ~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~ 89 (270)
.|+..+..++++|..+--....+......+.=+++.|.+.+..++..+..+.+.+.+.-..+..+.+-+..+..++..+.
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666555555555555555555556666666666665555555555554445554444444444444444
Q ss_pred HHH
Q psy1411 90 ERS 92 (270)
Q Consensus 90 ~~l 92 (270)
..+
T Consensus 161 e~L 163 (302)
T PF09738_consen 161 EQL 163 (302)
T ss_pred HHH
Confidence 444
No 161
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.66 E-value=9 Score=30.48 Aligned_cols=91 Identities=11% Similarity=0.261 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhh
Q psy1411 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQ 122 (270)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~ 122 (270)
|.-++.++++++..+..-...+..+...+..........+..+..+...+......++.++..+.-.......+...+..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 34444444444444444333333333333333333333333333333333333333333333333333233333333333
Q ss_pred hHHHHHHHHHH
Q psy1411 123 DEERMDQLTNQ 133 (270)
Q Consensus 123 ~e~~~~~le~~ 133 (270)
++.++..+...
T Consensus 92 le~El~~Lr~~ 102 (202)
T PF06818_consen 92 LEAELAELREE 102 (202)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 162
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.61 E-value=20 Score=34.30 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHhhhH
Q psy1411 170 KSGDAKIMELEEELKVVGNSL 190 (270)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~l 190 (270)
..+-.++..++.++..+...+
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.53 E-value=11 Score=31.30 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
....|......+-+.++.++..-..+. ..+.-....+..+++.+......++.++..+..+..+++.......
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKls-------hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLS-------HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444455555444433222 2333334455677777777777777777777777777766655544
No 164
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.23 E-value=4.7 Score=26.64 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411 138 RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176 (270)
Q Consensus 138 ~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~ 176 (270)
......+.....++......+..+...|.+|+..+-.++
T Consensus 38 ~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 38 SQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444445566677778888888888877765443
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.16 E-value=6.9 Score=28.45 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=8.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q psy1411 39 VEVDLDTTKKNLDQAVKDLEERE 61 (270)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~ 61 (270)
++.++..++..+..+...-..+.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 166
>PF15456 Uds1: Up-regulated During Septation
Probab=89.15 E-value=7.1 Score=28.57 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=18.7
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDL 43 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 43 (270)
+++.|++++-.+..+++.+...+. ++..+.++...+
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl 58 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSL 58 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 455566666666666666555555 444443333333
No 167
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.96 E-value=21 Score=33.80 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=5.8
Q ss_pred HhHHHHHHHHHHHHH
Q psy1411 152 SRKLAFVEDELEVAE 166 (270)
Q Consensus 152 ~~~~~~l~~~l~~~e 166 (270)
...+..+..+.+++.
T Consensus 477 ~~ELqqLReERdRl~ 491 (739)
T PF07111_consen 477 SLELQQLREERDRLD 491 (739)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 168
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.72 E-value=0.9 Score=38.76 Aligned_cols=90 Identities=7% Similarity=0.139 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy1411 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE 136 (270)
Q Consensus 57 l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~ 136 (270)
+..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus 44 v~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~ 123 (326)
T PF04582_consen 44 VASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSA 123 (326)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhh
Confidence 33333333333333444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhHhhh
Q psy1411 137 ARLLAEDADA 146 (270)
Q Consensus 137 ~~~~~~~~~~ 146 (270)
+...+..++.
T Consensus 124 lsTdvsNLks 133 (326)
T PF04582_consen 124 LSTDVSNLKS 133 (326)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 4444433333
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.60 E-value=12 Score=30.57 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 173 DAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE 245 (270)
Q Consensus 173 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~ 245 (270)
+..+.++...++.|..+.......+..+...+..++.-+...+..+......+..+...+.++...++.+...
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444444444445555555556666666555555555555555555555555554443
No 170
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.37 E-value=16 Score=34.03 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411 151 VSRKLAFVEDELEVAEDRVKSGDAKI 176 (270)
Q Consensus 151 ~~~~~~~l~~~l~~~e~r~~~~~~~~ 176 (270)
..+++..|+.+|.+-..+++.++.++
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 171
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.23 E-value=13 Score=30.35 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 21 KADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE 68 (270)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 68 (270)
.-.-++..+.+.+..+..+...+..+....+.++.++..+.....+.+
T Consensus 25 p~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 25 PEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444444444444444444444444444444444333
No 172
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.00 E-value=21 Score=33.27 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA 100 (270)
Q Consensus 66 ~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~ 100 (270)
.++..+..+...+..|...+..+...+..+.++++
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 173
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.93 E-value=16 Score=31.14 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=47.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225 (270)
Q Consensus 146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (270)
..+.+++.++..+..+|..-.+.+..-...|..|..++-.+...++.+-..-+.+...+......-..+..++.++..+.
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q psy1411 226 EFAEKTVKKLQKEV 239 (270)
Q Consensus 226 ~~~e~~~~~l~e~~ 239 (270)
.....-+...++.+
T Consensus 286 ~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 286 AECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 174
>KOG0979|consensus
Probab=87.77 E-value=30 Score=34.22 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy1411 90 ERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV 169 (270)
Q Consensus 90 ~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~ 169 (270)
.....+...+..+.+...........|+++.......+..+...+..+...+...-.++.+...++..+...+..+..+.
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555555555556666556655555566666666666666666666666666666
Q ss_pred HhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 170 KSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
.....++......+..+...+.....
T Consensus 335 ~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 335 EKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 66666666666777777777666555
No 175
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.40 E-value=28 Score=33.45 Aligned_cols=17 Identities=6% Similarity=0.397 Sum_probs=6.8
Q ss_pred HhHhHhhHHHHHHHHHH
Q psy1411 36 ADKVEVDLDTTKKNLDQ 52 (270)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ 52 (270)
...++.+...++..++.
T Consensus 71 ~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 71 CEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 176
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.39 E-value=22 Score=32.08 Aligned_cols=85 Identities=13% Similarity=0.213 Sum_probs=38.1
Q ss_pred HHHHHHHHhHhhHHhHHHH---HHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 6 KKMQAMKMEKDSAMDKADT---CEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE 82 (270)
Q Consensus 6 ~kl~~l~~e~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le 82 (270)
+.+++++.+.+.+.+.+.. +.+.+..++..+..+..+...+.... +.+++....+...+..+.
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~--------------~~mk~K~~~~~g~l~kl~ 336 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYV--------------NAMKQKSQEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHhcchHHHHHH
Confidence 4455555555544443332 23344444444444444444444333 333444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 83 EDLEKSEERSGTATAKLAEASQ 104 (270)
Q Consensus 83 ~el~~~~~~l~~~~~~l~~~e~ 104 (270)
.++...++++..+++.++++..
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 5554445554444444444443
No 177
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.83 E-value=23 Score=31.88 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAED 167 (270)
Q Consensus 156 ~~l~~~l~~~e~ 167 (270)
..+...+..+..
T Consensus 285 ~~l~~~i~~l~~ 296 (444)
T TIGR03017 285 KRAQAEINSLKS 296 (444)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 178
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.66 E-value=27 Score=32.47 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=57.4
Q ss_pred hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221 (270)
Q Consensus 142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (270)
..+...+.++-..+..+..++...-..++.--.++...++|+..+..--..+...++++-...+.+...+..+. ..
T Consensus 265 ~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~----~~ 340 (557)
T COG0497 265 SELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD----NS 340 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----hh
Confidence 33344444444455555555555555555555566667777777666666666666665555555555554433 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDR 252 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~ 252 (270)
......++..+..+.......-..+...+.+
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444444444333
No 179
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=86.56 E-value=8.7 Score=26.67 Aligned_cols=61 Identities=15% Similarity=0.004 Sum_probs=24.5
Q ss_pred hHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAAL 74 (270)
Q Consensus 14 e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l 74 (270)
|++.....+..+...+...-..+..++..+..+.......+..++.+.+....+..++..+
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344434333333333333333333344444444444444444444444444444333333
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.46 E-value=15 Score=29.62 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=25.2
Q ss_pred HHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 139 ~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
..+..+..+|++...+++.++.+...++.....+......|..+.+.+...+.
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 33344444444444455555555555554444444444444444444444433
No 181
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.00 E-value=16 Score=29.13 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhHhh
Q psy1411 179 LEEELKVVGNSLKS 192 (270)
Q Consensus 179 l~~~~~~~~~~l~~ 192 (270)
|...++.+..+|..
T Consensus 136 l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 136 LRREVERLRAELQR 149 (202)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 182
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.77 E-value=7.7 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l 92 (270)
.+......+..+...+..++
T Consensus 43 ~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 183
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.43 E-value=34 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=6.1
Q ss_pred HHhhHhHHHHHHHHHH
Q psy1411 166 EDRVKSGDAKIMELEE 181 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~ 181 (270)
..|+...+.++..+.-
T Consensus 369 qqr~~~~ed~lk~l~~ 384 (786)
T PF05483_consen 369 QQRLKKNEDQLKILTM 384 (786)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3333333333333333
No 184
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.11 E-value=17 Score=28.72 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=29.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411 113 CKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175 (270)
Q Consensus 113 ~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~ 175 (270)
+..+-.++..+..++..+...+.....- --..+......+..+...+.+|.+.+-.+..=
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~ 164 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSEN---DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSY 164 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444444311111 11245555556666666677777766655443
No 185
>PRK10698 phage shock protein PspA; Provisional
Probab=85.09 E-value=19 Score=29.27 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=20.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy1411 17 SAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63 (270)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (270)
.+++....+..-+.+.+..+..+...+.........+.+++..+...
T Consensus 21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~ 67 (222)
T PRK10698 21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ 67 (222)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555554444444444444444444444444444333
No 186
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.81 E-value=39 Score=32.58 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATA 97 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~ 97 (270)
.+.+-+..+++++.-+..+++++..
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544444444433
No 187
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.41 E-value=14 Score=27.12 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy1411 76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR 119 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~ 119 (270)
.|+..+...++...+-...+...+..+...+.....++..+...
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444333333333333333333333333333333
No 188
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.36 E-value=21 Score=29.12 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
.-+...+......+..++..+...-..-..++.++..+......++.+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555555443
No 189
>KOG4360|consensus
Probab=84.30 E-value=33 Score=31.31 Aligned_cols=100 Identities=12% Similarity=0.205 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHH
Q psy1411 52 QAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLT 131 (270)
Q Consensus 52 ~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le 131 (270)
.+.+++.....++......+......+....++...+-..+..++.++..+.-..++...-+....+..+.+..+...++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555555555555555555555666666666777777777777777777766666666666666666677666666
Q ss_pred HHHHHHHHHHhHhhhhHHHH
Q psy1411 132 NQLKEARLLAEDADAKSDEV 151 (270)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~e~ 151 (270)
.+..+....+.++..++..+
T Consensus 282 DkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66666666666655555443
No 190
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.08 E-value=38 Score=31.14 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1411 86 EKSEERSGTATAKLAE 101 (270)
Q Consensus 86 ~~~~~~l~~~~~~l~~ 101 (270)
+.++..+..++..++.
T Consensus 277 d~aeeel~~I~e~ie~ 292 (570)
T COG4477 277 DEAEEELGLIQEKIES 292 (570)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333334333333333
No 191
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.01 E-value=33 Score=29.67 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHH
Q psy1411 76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERM 127 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~ 127 (270)
=|.+.+++-...+...+..+......+......+..-+..+......+..++
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333333333333333333333
No 192
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.61 E-value=26 Score=28.32 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=25.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 17 SAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE 68 (270)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 68 (270)
.++++...+...+.+.+..+..+...+..+......+..++..+...+.+..
T Consensus 21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555544444444444444444444444433
No 193
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.80 E-value=34 Score=31.70 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q psy1411 95 ATAKLAEASQAADEANRMC 113 (270)
Q Consensus 95 ~~~~l~~~e~~~~~~~~~~ 113 (270)
+..++..+...+..+..++
T Consensus 150 ~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 150 AERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 194
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.21 E-value=34 Score=28.65 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=37.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
.+--+..++..+++....+++-..+|.++..++.++ |-.=++++..+++.++
T Consensus 66 KEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RM--rEDWIEEECHRVEAQL 117 (305)
T PF15290_consen 66 KEVCIRHLKAKLKESENRLHDRETEIDELKSQLARM--REDWIEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 344567777777787788888777877777777764 3455777887777776
No 195
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=80.15 E-value=27 Score=27.56 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411 127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 127 ~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~ 165 (270)
.......|.+.+..+.......+.+.+.+.....+++..
T Consensus 132 a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 132 AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444333
No 196
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.09 E-value=49 Score=30.45 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.2
Q ss_pred HHHHHHhHhh
Q psy1411 8 MQAMKMEKDS 17 (270)
Q Consensus 8 l~~l~~e~~~ 17 (270)
+..+..++|.
T Consensus 220 ~~e~~~~lP~ 229 (570)
T COG4477 220 LAELQTELPG 229 (570)
T ss_pred HHHHHhhchH
Confidence 3344444444
No 197
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=79.49 E-value=27 Score=27.18 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 196 (270)
++..++.+.-.+...-..++.+|..|+..+..-..+-+-+.+.
T Consensus 121 kLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdk 163 (178)
T PF14073_consen 121 KLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDK 163 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566555666666666666655555444444443
No 198
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.17 E-value=15 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 57 LEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 57 l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
+..++..+..++..+..+..++......+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 199
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.66 E-value=33 Score=27.72 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 45 TTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
.+...+.++...+..++..+..+-.....+.+++..+...+..+....
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555554444555555555555554444443
No 200
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.48 E-value=41 Score=28.69 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1411 198 EKANQRVEEYKRQIKQLAVKLKEAEARA----EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261 (270)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld 261 (270)
+.+......+...+..+...+....... ..+......++.....+...+...-.+..-+...+.
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~ls 292 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLS 292 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554443322 223344555666666666655555444444444433
No 201
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.12 E-value=34 Score=27.49 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhHhH
Q psy1411 157 FVEDELEVAEDRVKSG 172 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~ 172 (270)
.....+..++.|+..+
T Consensus 122 ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 122 EYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 202
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.78 E-value=25 Score=25.79 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~ 192 (270)
|+..+...++...+-...+...+..+...+..+...+..
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444444443444444443333333333333333
No 203
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.72 E-value=60 Score=30.12 Aligned_cols=30 Identities=30% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411 150 EVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179 (270)
Q Consensus 150 e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l 179 (270)
++..++..++.++..+..++..+..++.-|
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 204
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=77.70 E-value=8.7 Score=26.92 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQL-KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVK 170 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l-~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~ 170 (270)
....++.....++.+++.|...| .+++.-+.........+..+...++..+.+....+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666665553 444444433333333333333333333333333333
No 205
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.41 E-value=42 Score=28.13 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTN 132 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~ 132 (270)
+......+..+..+-..+...++.....++...+.+..+..-.=..-...+.++.++..+-.
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333344444444444433
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=76.78 E-value=62 Score=29.78 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
+..|...+.........+...-..+..++..++........++..+...+..+++++...+..+
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333333333333333444444444444444444444444444444444444444444443
No 207
>KOG1962|consensus
Probab=76.57 E-value=38 Score=27.30 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=31.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 40 EVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 40 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
....+........+..++.........+......+....+.+..+.+++-+.-..++.++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555556666666555554444433
No 208
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.44 E-value=5.6 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERS-GTATAKLAEASQAADEA 109 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l-~~~~~~l~~~e~~~~~~ 109 (270)
.+......++.+++.+...+ +++...+..++.....+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~ 49 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADARRERAAL 49 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544 44444444444333333
No 209
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=76.02 E-value=80 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHH
Q psy1411 111 RMCKVLENRSQQDEERMDQLT 131 (270)
Q Consensus 111 ~~~~~l~~~~~~~e~~~~~le 131 (270)
+.+..+..++..+..++..++
T Consensus 339 P~v~~l~~~~~~L~~~~~~l~ 359 (726)
T PRK09841 339 PTYRALLEKRQTLEQERKRLN 359 (726)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 210
>KOG4809|consensus
Probab=73.91 E-value=75 Score=29.38 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=26.4
Q ss_pred HHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102 (270)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~ 102 (270)
....+...++.++..+.+....+.++....+.+.........++..++--++.-.+.+....+.+..+
T Consensus 339 e~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 339 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433333333343333333333333333333333333
No 211
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.74 E-value=21 Score=22.85 Aligned_cols=45 Identities=7% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Q psy1411 8 MQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQ 52 (270)
Q Consensus 8 l~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 52 (270)
+..|...++.+-..|..+...-..+..+...+..+...+......
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666655555555555555444433
No 212
>KOG0249|consensus
Probab=73.72 E-value=87 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 53 AVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 53 ~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
+...+..-+..+-..+..+-++..++...+..+
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence 333444444444444444444455544444444
No 213
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.58 E-value=19 Score=22.26 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy1411 71 VAALNRK 77 (270)
Q Consensus 71 ~~~l~~r 77 (270)
..+...|
T Consensus 40 AaRAN~R 46 (56)
T PF04728_consen 40 AARANQR 46 (56)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 214
>KOG2196|consensus
Probab=73.52 E-value=49 Score=27.09 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 160 DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239 (270)
Q Consensus 160 ~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~ 239 (270)
.++..|.+-+-.....|..|-.....+....+.++...+=+.....+++..+.-++..+.....- .-......+.
T Consensus 99 ~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~-----~~~~~~D~eR 173 (254)
T KOG2196|consen 99 TQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGH-----TYLSRADVER 173 (254)
T ss_pred HHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhhhhhhHHH
Confidence 34455555555555555555555555555555555544444444444444444444433321110 0011122222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhC
Q psy1411 240 DRLEDELGLNKDRYKSLADEMDSTFAELAG 269 (270)
Q Consensus 240 ~~le~~l~~~~~~~~~~~~eld~~~~~~~~ 269 (270)
...-.-...+..++.++...++.++..||.
T Consensus 174 ~qty~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 174 EQTYKMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 222233344445555555555555555554
No 215
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.92 E-value=62 Score=27.98 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
+...-...+=+..-...-...+...+..+..+...+......+..-+..+.....
T Consensus 133 l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~ 187 (325)
T PF08317_consen 133 LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333443333333444444444444444444444444444444333333
No 216
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=72.01 E-value=15 Score=32.38 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhh
Q psy1411 155 LAFVEDELEVAEDRV 169 (270)
Q Consensus 155 ~~~l~~~l~~~e~r~ 169 (270)
+..+...+.+++++.
T Consensus 174 i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 174 IKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 333334444443333
No 217
>KOG4593|consensus
Probab=71.95 E-value=94 Score=29.66 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e 166 (270)
....+++.+..+...+......+...+....-+...+....+++..++.+-+++.
T Consensus 469 ~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 469 RLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444555555566665555554444
No 218
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=70.31 E-value=27 Score=22.66 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTT 46 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 46 (270)
|.-|+.+|..+...++....+.+.++......+.....+..+++.+
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655555555544444444433333333333
No 219
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.22 E-value=26 Score=22.43 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy1411 150 EVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186 (270)
Q Consensus 150 e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~ 186 (270)
.+......+.++...+-.+.+.+..++..|-.++..+
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333444444555555555555555555555444433
No 220
>PRK10698 phage shock protein PspA; Provisional
Probab=69.33 E-value=60 Score=26.37 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=23.6
Q ss_pred HHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 31 DANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRK 77 (270)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r 77 (270)
-+..-+.+..+.+..++..+..+-.....+..++..+...+..|..+
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444555555555555555555444
No 221
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.16 E-value=37 Score=23.84 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 126 ~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
++..++.+...+...+-+-......+...+...+..|..++..++.+.-+...|..++..+..++.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433344444444455555555555555555555555555555555555554
No 222
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=69.12 E-value=35 Score=23.61 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=30.3
Q ss_pred HHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 29 AKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 29 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
+..+...+..+..........+..++..+..+...+....+.+..+.+....+..++..+...+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444445555555554444444444444444443
No 223
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=68.94 E-value=65 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAAD 107 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~ 107 (270)
+..+........+.+...+..++.-+.
T Consensus 75 aq~e~q~Aa~~yerA~~~h~aAKe~v~ 101 (239)
T PF05276_consen 75 AQQEAQKAALQYERANSMHAAAKEMVA 101 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333
No 224
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.73 E-value=27 Score=22.04 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
++..+.....+...+..++..+..++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444443
No 225
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=68.71 E-value=43 Score=24.49 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy1411 47 KKNLDQAVKDL 57 (270)
Q Consensus 47 ~~~~~~~~~~l 57 (270)
+..+..+...+
T Consensus 42 ~seldqA~~~~ 52 (136)
T PF11570_consen 42 RSELDQANKKV 52 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 226
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.14 E-value=82 Score=27.46 Aligned_cols=238 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 20 DKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
+++...=..+.++...+..+..++...+..+.........+ +..+..+-............+-..+......+...-
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~l---l~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~ 77 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEEL---LEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIK 77 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhhh--------------------------------------------------------
Q psy1411 100 AEASQAADEANRMCKVLENRSQQD-------------------------------------------------------- 123 (270)
Q Consensus 100 ~~~e~~~~~~~~~~~~l~~~~~~~-------------------------------------------------------- 123 (270)
..+...+..+.+.+......+..+
T Consensus 78 ~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~ 157 (344)
T PF12777_consen 78 EEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQ 157 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHH
Q ss_pred -----------HHHHHHHHHHHHHHHHHHhHhhhhHHH---------HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411 124 -----------EERMDQLTNQLKEARLLAEDADAKSDE---------VSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 124 -----------e~~~~~le~~l~~~~~~~~~~~~~~~e---------~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~ 183 (270)
...+..+..-+..-.+........-.. +-..+..+-..+.=....+..+...+......+
T Consensus 158 ~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L 237 (344)
T PF12777_consen 158 RLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQL 237 (344)
T ss_dssp HHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411 184 KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260 (270)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~el 260 (270)
......+..+......+....+........+.........++..+..=+..|......|...+..+......+-+.+
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
No 227
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.12 E-value=77 Score=27.14 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy1411 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~ 121 (270)
.+..++..+..++..+..+-..-..+.++-..+.=.+..|.+.+..+++.+......+.... .++..+...+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~-------~elEr~K~~~d 150 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKI-------RELERQKRAHD 150 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 45667777777778888877777777777777777777777777777777766665554332 33444444455
Q ss_pred hhHHHHHHHHHHHHH
Q psy1411 122 QDEERMDQLTNQLKE 136 (270)
Q Consensus 122 ~~e~~~~~le~~l~~ 136 (270)
.+..++..+...+.+
T Consensus 151 ~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 151 SLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
No 228
>PRK02119 hypothetical protein; Provisional
Probab=68.04 E-value=31 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=7.8
Q ss_pred HhhHhHHHHHHHHHHHHHHHh
Q psy1411 167 DRVKSGDAKIMELEEELKVVG 187 (270)
Q Consensus 167 ~r~~~~~~~~~~l~~~~~~~~ 187 (270)
.|+..++.++.-.+..++.++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 229
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.72 E-value=33 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=10.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy1411 241 RLEDELGLNKDRYKSLADEMDSTFAE 266 (270)
Q Consensus 241 ~le~~l~~~~~~~~~~~~eld~~~~~ 266 (270)
.+..+-..++.....+...+..++..
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444444444444433
No 230
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.28 E-value=96 Score=27.91 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVA 165 (270)
Q Consensus 154 ~~~~l~~~l~~~ 165 (270)
++..++.++..+
T Consensus 262 ~l~~le~~l~~l 273 (444)
T TIGR03017 262 DIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 231
>PRK11519 tyrosine kinase; Provisional
Probab=67.28 E-value=1.3e+02 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=6.2
Q ss_pred HHHHhhhhhhhHHHHHH
Q psy1411 113 CKVLENRSQQDEERMDQ 129 (270)
Q Consensus 113 ~~~l~~~~~~~e~~~~~ 129 (270)
+..+..+...+..++..
T Consensus 341 v~~l~~~~~~L~~~~~~ 357 (719)
T PRK11519 341 YRTLLEKRKALEDEKAK 357 (719)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 232
>PHA01750 hypothetical protein
Probab=66.36 E-value=23 Score=22.43 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=3.2
Q ss_pred HHHHHHHhH
Q psy1411 7 KMQAMKMEK 15 (270)
Q Consensus 7 kl~~l~~e~ 15 (270)
++++|..++
T Consensus 43 ELdNL~~ei 51 (75)
T PHA01750 43 ELDNLKTEI 51 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 233
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.79 E-value=93 Score=27.22 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHhHhhhhHHHHHhHHHHHHHH
Q psy1411 83 EDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA-RLLAEDADAKSDEVSRKLAFVEDE 161 (270)
Q Consensus 83 ~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~-~~~~~~~~~~~~e~~~~~~~l~~~ 161 (270)
.-+..+..++..+..++..+.......-+.+..+..++..+...+......+... ...+......|..+.+.....+.-
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~ 293 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQ 293 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444434566666666666666666655544210 112333444666667777776666
Q ss_pred HHHHHHhhHhHH
Q psy1411 162 LEVAEDRVKSGD 173 (270)
Q Consensus 162 l~~~e~r~~~~~ 173 (270)
+..+-.+.+.+.
T Consensus 294 y~~~l~r~~~a~ 305 (362)
T TIGR01010 294 LKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 234
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=1.5e+02 Score=29.28 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy1411 203 RVEEYKRQIKQLAVKLKEAEARAEFAE--KTVKKLQKEVDRLEDELGLNKDRYKSLA 257 (270)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~~~~~~~~e--~~~~~l~e~~~~le~~l~~~~~~~~~~~ 257 (270)
..+.+.+.+..+...+......+..++ ..+..++.....+...++....++..+.
T Consensus 782 ~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~ 838 (984)
T COG4717 782 AIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLR 838 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544 4445555555555566665555555543
No 235
>KOG0243|consensus
Probab=64.64 E-value=1.6e+02 Score=29.67 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy1411 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE 182 (270)
Q Consensus 114 ~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~ 182 (270)
+.....+..++.+++.++..+......+.........+..+...+...|......+..+...+..+...
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333332222333333344444444444444444433333333333
No 236
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=53 Score=23.79 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
-..+..+...+.....+...++..+.....-+..++.
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555555555555555554444
No 237
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=63.43 E-value=49 Score=23.23 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 52 QAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG 93 (270)
Q Consensus 52 ~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~ 93 (270)
.+...+..-...+..++++++++.-|..+|..++..+..++.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666667777766666666666654
No 238
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.54 E-value=61 Score=24.00 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEAS 103 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e 103 (270)
+.-+..++..+...+..+...+..+...+..+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333333
No 239
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.80 E-value=1.3e+02 Score=27.41 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 215 AVKLKEAEARAEFAEKTVKKLQ 236 (270)
Q Consensus 215 ~~~~~~~~~~~~~~e~~~~~l~ 236 (270)
..++..+...+..++..+..++
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 240
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.22 E-value=76 Score=24.37 Aligned_cols=7 Identities=57% Similarity=0.667 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy1411 177 MELEEEL 183 (270)
Q Consensus 177 ~~l~~~~ 183 (270)
..+..++
T Consensus 96 k~l~~eL 102 (169)
T PF07106_consen 96 KSLEAEL 102 (169)
T ss_pred HHHHHHH
Confidence 3333333
No 241
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.15 E-value=1e+02 Score=25.82 Aligned_cols=19 Identities=0% Similarity=-0.029 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTAT 96 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~ 96 (270)
++...-.++.+...+.++.
T Consensus 161 Lesa~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEIL 179 (269)
T ss_pred HHHcCcchHHHHHHHHHHH
Confidence 3334555666666665544
No 242
>PRK04325 hypothetical protein; Provisional
Probab=59.87 E-value=47 Score=21.80 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHhHhhHHHHHHHHH
Q psy1411 28 QAKDANLRADKVEVDLDTTKKNLD 51 (270)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~~~~~~~ 51 (270)
.+..++.++...+.-++.+...+.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~ 33 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 243
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.42 E-value=59 Score=22.80 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 46 TKKNLDQAVKDLEEREKALAAAESEVAA 73 (270)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 73 (270)
+-..++.+...+..++...+.+...+..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333344444444444444444433333
No 244
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.28 E-value=59 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
.+..+...+..+..++..++..+.+...-+.
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 245
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=1.9e+02 Score=28.60 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK 38 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~ 38 (270)
+|+.-..++.+.++.+...+..++......+.....
T Consensus 554 r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e 589 (984)
T COG4717 554 RIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAE 589 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 455555666666666665555555555555544333
No 246
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.26 E-value=83 Score=24.17 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy1411 173 DAKIMELEEELKVVG 187 (270)
Q Consensus 173 ~~~~~~l~~~~~~~~ 187 (270)
...+..+..++..+.
T Consensus 122 ~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 122 EEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 247
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.05 E-value=48 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=12.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 162 l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
++.++.+....+..+..+..++..+....+
T Consensus 22 i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 22 IDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444433
No 248
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.03 E-value=1.1e+02 Score=25.66 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=10.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy1411 160 DELEVAEDRVKSGDAKIMELEEELKVV 186 (270)
Q Consensus 160 ~~l~~~e~r~~~~~~~~~~l~~~~~~~ 186 (270)
..|.+.++++..-+..|.+|..++..|
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 249
>KOG3564|consensus
Probab=57.81 E-value=1.5e+02 Score=27.06 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=32.7
Q ss_pred HHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 34 LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96 (270)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~ 96 (270)
..+..+-.++..+++.+..+..+...+..++....+.+...-.+...++.+++.++.++..+.
T Consensus 42 ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~ 104 (604)
T KOG3564|consen 42 EKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIK 104 (604)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444444455555555555555555555555555555556666665555554433
No 250
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=57.50 E-value=1.4e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHhhHHhHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADT 24 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~ 24 (270)
.+-+|+..|+.|++.+...+..
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEK 112 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554444
No 251
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=56.77 E-value=1.5e+02 Score=26.79 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy1411 44 DTTKKNLDQAVKDLEEREKALAAAESEVA--ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~--~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~ 121 (270)
.-++.++..++..+..++..+..+.+... ........+-.-+..++.++......+..+........+.+..+..++.
T Consensus 245 ~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~ 324 (434)
T PRK15178 245 LWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIK 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Confidence 33344444444444444444444433322 2233334444555566666666666666665544444467777777777
Q ss_pred hhHHHHHHHHHHHH
Q psy1411 122 QDEERMDQLTNQLK 135 (270)
Q Consensus 122 ~~e~~~~~le~~l~ 135 (270)
.++.++...+..+.
T Consensus 325 aLe~QIa~er~kl~ 338 (434)
T PRK15178 325 VLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766663
No 252
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=56.75 E-value=83 Score=23.69 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 224 RAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 224 ~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
.++...+.+.++......-+.++..+-..+.....+-.++..
T Consensus 92 kID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~ 133 (159)
T PF04949_consen 92 KIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVT 133 (159)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444433333333333333333333333333333
No 253
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=56.60 E-value=1e+02 Score=24.81 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLE 58 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 58 (270)
||-+|++|-...-|++.+...+.. .+..-+..+..+.+-+..+..+.+++..++.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~E---ElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANE---ELRKREEQIAHLKDLLKKAYQERDEAREQLQ 57 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888886554432 4444444444444444444444444333333
No 254
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=55.84 E-value=45 Score=22.46 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVE 40 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~ 40 (270)
||+.+..+++....+....+..+..++.+...++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555444433
No 255
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=55.49 E-value=57 Score=22.01 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1411 77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEAN 110 (270)
Q Consensus 77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~ 110 (270)
++..+..++......+.+.++++..++....+++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555555554444
No 256
>PRK15396 murein lipoprotein; Provisional
Probab=55.47 E-value=59 Score=21.62 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 58 EEREKALAAAESEVAALNRKVQ 79 (270)
Q Consensus 58 ~~~~~~~~~~e~~~~~l~~r~~ 79 (270)
..++..+.....+..+...|+.
T Consensus 49 ~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 49 NAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443
No 257
>KOG2991|consensus
Probab=54.48 E-value=1.3e+02 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=14.1
Q ss_pred HhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411 141 AEDADAKSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 141 ~~~~~~~~~e~~~~~~~l~~~l~~~ 165 (270)
+..++..+++...++..+.++|.-|
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAW 203 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3444445555555566666666666
No 258
>KOG0243|consensus
Probab=54.05 E-value=2.5e+02 Score=28.45 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=49.8
Q ss_pred HHHHHHHhHhhH---------HhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSA---------MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRK 77 (270)
Q Consensus 7 kl~~l~~e~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r 77 (270)
+|+.|+.++-++ ++++-..+.........+..+...+..+...+..+...+.........+......+..+
T Consensus 412 EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 412 EIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455555555554 23443333334444445555555566666666655555554444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATAKLAEA 102 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~~l~~~ 102 (270)
+.....++..+...+..+...+...
T Consensus 492 L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 492 LQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544433
No 259
>KOG1962|consensus
Probab=53.97 E-value=1.2e+02 Score=24.59 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411 203 RVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260 (270)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~el 260 (270)
+.+........++.++......++.++.....+..+...+..+..++-..+.++..++
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3344444444555444444444555555555555555444444444444444444443
No 260
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.71 E-value=2e+02 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 204 VEEYKRQIKQLAVKLKEAEARAEFA 228 (270)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (270)
...++..+..+..++..+-..+...
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444443
No 261
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=53.08 E-value=1.8e+02 Score=26.40 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy1411 67 AESEVAALNRKVQ 79 (270)
Q Consensus 67 ~e~~~~~l~~r~~ 79 (270)
++.++..+...+.
T Consensus 291 Le~qLa~~~aeL~ 303 (434)
T PRK15178 291 FETQLAEAKAEYA 303 (434)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 262
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=52.79 E-value=99 Score=23.40 Aligned_cols=93 Identities=12% Similarity=0.217 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHH
Q psy1411 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD-RLEDELGLNKDRY 253 (270)
Q Consensus 175 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~-~le~~l~~~~~~~ 253 (270)
.+..+.++.+...+++-++..+..-.........+.+..++...+.+..-++...+.+.++....- .+...+..+....
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333444444444444444444444444445555555444431 1122244444444
Q ss_pred HHHHHHHHHHHHHh
Q psy1411 254 KSLADEMDSTFAEL 267 (270)
Q Consensus 254 ~~~~~eld~~~~~~ 267 (270)
..+...+....+++
T Consensus 125 ~el~~i~emv~~d~ 138 (157)
T COG3352 125 NELKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHHHhccc
Confidence 44444444444443
No 263
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=52.69 E-value=70 Score=21.65 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
+..+...+..+...+..++..+.....+..+...|+..
T Consensus 33 V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 33 VQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333333333333333444444444433
No 264
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.65 E-value=54 Score=20.27 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEER 91 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~ 91 (270)
+...+..|..++.+|..++..+...
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333
No 265
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.61 E-value=1.7e+02 Score=26.12 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhHhhH
Q psy1411 2 DAIKKKMQAMKMEKDSA 18 (270)
Q Consensus 2 ~~i~~kl~~l~~e~~~~ 18 (270)
|.|++||..+...+..-
T Consensus 7 ~~l~~Ki~~~~eqi~~e 23 (395)
T PF10267_consen 7 DHLQQKILKLKEQIKVE 23 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888777776654
No 266
>KOG1853|consensus
Probab=52.17 E-value=1.4e+02 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATAKLAEASQ 104 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~~l~~~e~ 104 (270)
+..|++++..+....+.+..-+.+++.
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333333
No 267
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.15 E-value=1.4e+02 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy1411 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDS 262 (270)
Q Consensus 226 ~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~ 262 (270)
+.+..++..|+-.+..+..++..+..+...+-.++|.
T Consensus 64 ~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 64 SDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 268
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.05 E-value=1.6e+02 Score=25.43 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=41.7
Q ss_pred HHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218 (270)
Q Consensus 139 ~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (270)
..+.+-..+.+.+...-+.+-+.|-.+..=.-.+......|++-+..+..+-..++...+.+.....+.++.-..+..++
T Consensus 92 es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 92 ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 33333333334444444445555544444444444444455555555555555555544445444444555555555555
Q ss_pred HHHHHHHH
Q psy1411 219 KEAEARAE 226 (270)
Q Consensus 219 ~~~~~~~~ 226 (270)
.++.....
T Consensus 172 aE~layqq 179 (401)
T PF06785_consen 172 AEALAYQQ 179 (401)
T ss_pred HHHHHHHH
Confidence 55444433
No 269
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.99 E-value=93 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAED 167 (270)
Q Consensus 154 ~~~~l~~~l~~~e~ 167 (270)
++..++..+..++.
T Consensus 79 r~E~ie~~ik~lek 92 (121)
T PRK09343 79 RKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 33343333333333
No 270
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.15 E-value=1.9e+02 Score=25.75 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHhhH
Q psy1411 3 AIKKKMQAMKMEKDSA 18 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~ 18 (270)
++++++..|..++...
T Consensus 98 RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 98 RLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888888876
No 271
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.33 E-value=97 Score=22.28 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=25.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy1411 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLN 249 (270)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~ 249 (270)
......++........+..........-..........+..+...+..+...+..+...+..+
T Consensus 45 ~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 45 EEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333344444444444444444444444444333
No 272
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=48.61 E-value=1.3e+02 Score=23.48 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411 68 ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133 (270)
Q Consensus 68 e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~ 133 (270)
...+.++..+...++..++.++..+...-..+..--...-....++..++.++..++..++.+=..
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655444444222223333345555555555555555544333
No 273
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=47.81 E-value=2.2e+02 Score=25.89 Aligned_cols=21 Identities=5% Similarity=0.162 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1411 220 EAEARAEFAEKTVKKLQKEVD 240 (270)
Q Consensus 220 ~~~~~~~~~e~~~~~l~e~~~ 240 (270)
.+...+..+...+..++..+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 274
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.49 E-value=1.4e+02 Score=23.62 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1411 68 ESEVAALNRKVQMIEE 83 (270)
Q Consensus 68 e~~~~~l~~r~~~le~ 83 (270)
+..+..+..++-.+..
T Consensus 130 e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 130 ESEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 275
>PRK00295 hypothetical protein; Provisional
Probab=46.84 E-value=77 Score=20.38 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=7.5
Q ss_pred HHHHHHhHhHhhHHHHHHHH
Q psy1411 31 DANLRADKVEVDLDTTKKNL 50 (270)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~ 50 (270)
.++.++...+.-++.+...+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v 28 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 276
>KOG0972|consensus
Probab=46.57 E-value=1.8e+02 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1411 230 KTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261 (270)
Q Consensus 230 ~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld 261 (270)
.-+.++...+.++..+...+.+++.-+.--++
T Consensus 335 aplvkIkqavsKLk~et~~mnv~igv~ehs~l 366 (384)
T KOG0972|consen 335 APLVKIKQAVSKLKEETQTMNVQIGVFEHSIL 366 (384)
T ss_pred chHHHHHHHHHHHHHHHHhhhhheehhhHHHH
Confidence 44566777777777777777776665544443
No 277
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=46.25 E-value=23 Score=17.49 Aligned_cols=16 Identities=6% Similarity=0.412 Sum_probs=9.6
Q ss_pred ChHHHHHHHHHHHhHh
Q psy1411 1 MDAIKKKMQAMKMEKD 16 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~ 16 (270)
|+.++.+|..|..++.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665554
No 278
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.13 E-value=1.7e+02 Score=24.24 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1411 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116 (270)
Q Consensus 65 ~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l 116 (270)
.-+..+-++...|...|+.++......+..+...++.+..+.-.+-..+.-+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777776666666666666666666655555444444
No 279
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=45.95 E-value=93 Score=21.08 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=6.0
Q ss_pred HHHHHHhHhhHHhHHH
Q psy1411 8 MQAMKMEKDSAMDKAD 23 (270)
Q Consensus 8 l~~l~~e~~~~~~~~~ 23 (270)
++.|..++..+..+.+
T Consensus 26 vdqLss~V~~L~~kvd 41 (85)
T PRK09973 26 VNQLASNVQTLNAKIA 41 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 280
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=45.90 E-value=1.5e+02 Score=23.46 Aligned_cols=16 Identities=38% Similarity=0.339 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1411 61 EKALAAAESEVAALNR 76 (270)
Q Consensus 61 ~~~~~~~e~~~~~l~~ 76 (270)
..+...++.+...+.+
T Consensus 104 eirR~~LeAQka~~eR 119 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLER 119 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 281
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.99 E-value=76 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAE 101 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~ 101 (270)
+..+..||..|+.++.+++..+....+....
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766555444433
No 282
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=44.69 E-value=1.4e+02 Score=22.73 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 23 DTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102 (270)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~ 102 (270)
......+..+..........+..++.-...-...+...-....-.-..++.+...+..|...-..+...+..+...+...
T Consensus 21 ~~q~~~l~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e 100 (152)
T PF07321_consen 21 RRQERRLQEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQE 100 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555544444444445555555555555555555555554444444444
Q ss_pred HHHHh
Q psy1411 103 SQAAD 107 (270)
Q Consensus 103 e~~~~ 107 (270)
...+.
T Consensus 101 ~~~l~ 105 (152)
T PF07321_consen 101 RQALE 105 (152)
T ss_pred HHHHH
Confidence 44443
No 283
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.61 E-value=1.7e+02 Score=26.70 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1411 76 RKVQMIEEDLEKSEERSGTAT 96 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l~~~~ 96 (270)
.....++..|+.++..+..+.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 333333444444443333333
No 284
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.49 E-value=2.7e+02 Score=25.80 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHHHH
Q psy1411 121 QQDEERMDQLTNQL 134 (270)
Q Consensus 121 ~~~e~~~~~le~~l 134 (270)
..+.+.+..++.++
T Consensus 284 ~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 284 DHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 285
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=43.27 E-value=61 Score=20.33 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhHh
Q psy1411 155 LAFVEDELEVAEDRVKS 171 (270)
Q Consensus 155 ~~~l~~~l~~~e~r~~~ 171 (270)
+..++..|...+.|+..
T Consensus 34 La~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 34 LAALEQRLQAAEQRAQA 50 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 286
>KOG4809|consensus
Probab=42.33 E-value=2.9e+02 Score=25.78 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAA 67 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (270)
+|+..+++...+.++.+.++..+.+....+-++.+...++....-..+..+..+.+.+...
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 4556666666666666666666555555555555554444444444444444444443333
No 287
>PF13166 AAA_13: AAA domain
Probab=42.16 E-value=3.3e+02 Score=26.30 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1411 210 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG 247 (270)
Q Consensus 210 ~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~ 247 (270)
.+..+...+..+...+..+...+..+...+..+...+.
T Consensus 418 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444444444333
No 288
>KOG0972|consensus
Probab=42.14 E-value=2.2e+02 Score=24.25 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~ 152 (270)
.|..-+.++..--..+...+.....-+..+...+. ..+..+..+...+..++..+-..+..+... +.++.
T Consensus 224 DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit---~~LEkI~SREK~lNnqL~~l~q~fr~a~~~-------lse~~ 293 (384)
T KOG0972|consen 224 DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT---KALEKIASREKSLNNQLASLMQKFRRATDT-------LSELR 293 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33344444444444444444444444444433333 334444444444445554444444444333 33333
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhh
Q psy1411 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGN 188 (270)
Q Consensus 153 ~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~ 188 (270)
.+++.+......-...+...-..+..+..+++.-..
T Consensus 294 e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~ 329 (384)
T KOG0972|consen 294 EKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGA 329 (384)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444333333333333334344444444333
No 289
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=42.00 E-value=2.8e+02 Score=25.42 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=5.2
Q ss_pred HHHHHHHHhHhhHH
Q psy1411 6 KKMQAMKMEKDSAM 19 (270)
Q Consensus 6 ~kl~~l~~e~~~~~ 19 (270)
.+++.|...-..+.
T Consensus 295 ~~i~~l~ek~r~l~ 308 (622)
T COG5185 295 QKIKTLREKWRALK 308 (622)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 290
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=41.68 E-value=1.2e+02 Score=21.09 Aligned_cols=26 Identities=12% Similarity=0.251 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1411 84 DLEKSEERSGTATAKLAEASQAADEA 109 (270)
Q Consensus 84 el~~~~~~l~~~~~~l~~~e~~~~~~ 109 (270)
.+......+..+...+..+...+..+
T Consensus 60 ~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 60 AIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 291
>KOG3091|consensus
Probab=40.75 E-value=2.9e+02 Score=25.36 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 62 ~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
.++.--.+.+....-|+..+.+.+.++...-.....+|
T Consensus 341 ~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI 378 (508)
T KOG3091|consen 341 QRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKI 378 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33333444445555555555555555543333333333
No 292
>KOG1937|consensus
Probab=40.70 E-value=2.8e+02 Score=25.17 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 106 ADEANRMCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~e~~~~~le~~l 134 (270)
++.+...+..+..++..+...++..+.-+
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pl 323 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPL 323 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33333444444444444445555444443
No 293
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=40.50 E-value=9.3 Score=28.49 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHH
Q psy1411 150 EVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLE 194 (270)
Q Consensus 150 e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~ 194 (270)
.....+..+...+..|...++.+...+......+......+....
T Consensus 14 ~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~ 58 (138)
T PF06009_consen 14 NVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDAN 58 (138)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555554444444444444444333
No 294
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.33 E-value=2.9e+02 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el 85 (270)
-+..+-..++.+..++..+..+-..+..+.++|..|...+...+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444444445445555554444444444455444444444443
No 295
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=40.20 E-value=1.8e+02 Score=22.74 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy1411 94 TATAKLAEASQ 104 (270)
Q Consensus 94 ~~~~~l~~~e~ 104 (270)
.+.+.++.++.
T Consensus 60 alNAsIEAara 70 (213)
T PF00015_consen 60 ALNASIEAARA 70 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhccccchh
Confidence 34444444433
No 296
>KOG0288|consensus
Probab=39.99 E-value=2.8e+02 Score=24.89 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhhH
Q psy1411 177 MELEEELKVVGNSL 190 (270)
Q Consensus 177 ~~l~~~~~~~~~~l 190 (270)
..|.++..++..++
T Consensus 58 ~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 58 NRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 297
>KOG2010|consensus
Probab=39.76 E-value=2.5e+02 Score=24.27 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 19 MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK 98 (270)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~ 98 (270)
++++..+-=--..+......+.=+.+.|.+.+...+..|..-..+..+...++....+-+..|......+...+..-...
T Consensus 125 eekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdel 204 (405)
T KOG2010|consen 125 EEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDEL 204 (405)
T ss_pred HHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333344555678888888888888888888888888888888888888887777777766555544
Q ss_pred HH
Q psy1411 99 LA 100 (270)
Q Consensus 99 l~ 100 (270)
|+
T Consensus 205 ie 206 (405)
T KOG2010|consen 205 IE 206 (405)
T ss_pred HH
Confidence 44
No 298
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.56 E-value=3.8e+02 Score=26.28 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=40.8
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1411 37 DKVEVDLDTTKKNLDQAVKDLEEREKAL-----AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEAN 110 (270)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~ 110 (270)
+-+..+-..|+..++-+..++.+-.+-- .+..-++.+++...-.|+..+.+....++.++.+-+++-+-++...
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 3344445555555555555555533322 3345567777776666666666666666666655555544444333
No 299
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.96 E-value=1.1e+02 Score=20.07 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 59 EREKALAAAESEVAALNRKVQMIEEDLE 86 (270)
Q Consensus 59 ~~~~~~~~~e~~~~~l~~r~~~le~el~ 86 (270)
+....++.+..+..+|.-|+--++..+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444566666677777777777777765
No 300
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.67 E-value=2.3e+02 Score=23.53 Aligned_cols=47 Identities=11% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 200 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246 (270)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l 246 (270)
+..+.+.+......++.++......+..+..++..|+....+|-.++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666655555544
No 301
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=38.64 E-value=78 Score=22.76 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy1411 236 QKEVDRLEDELGLNKDRYKSLADEMDS 262 (270)
Q Consensus 236 ~e~~~~le~~l~~~~~~~~~~~~eld~ 262 (270)
...|..+...+..+.....++...|+.
T Consensus 56 ~~~I~~L~~~v~~~~~~Q~~ld~~L~~ 82 (116)
T PF05064_consen 56 GEKISKLYSEVQKAESEQKRLDQELDF 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 302
>KOG0982|consensus
Probab=37.95 E-value=3.1e+02 Score=24.77 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy1411 38 KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLE 117 (270)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~ 117 (270)
++...+.-+...+.++...........+.+..++-.+..|.-.|++.+...+-...+.-..-..-...+--. .-....
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k--~eReas 296 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIK--KEREAS 296 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHH
Q psy1411 118 NRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSE 197 (270)
Q Consensus 118 ~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 197 (270)
-.+..++..+..++......+..+..+..-.+.+....+.+...|+.+..++.....-...+...+............-.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411 198 EKANQRVEEYKRQIKQLA-VKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260 (270)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~el 260 (270)
+++...+..+....-.+. -...--..+...+++.++.++.....+...-..+....-.+....
T Consensus 377 eelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~ 440 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQF 440 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHH
No 303
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.84 E-value=1.8e+02 Score=22.12 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhHhh
Q psy1411 20 DKADTCEGQAKDANLRADKVEVD 42 (270)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~ 42 (270)
.++.........+..++......
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~ 42 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQ 42 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 304
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=37.82 E-value=2e+02 Score=22.72 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=33.7
Q ss_pred hhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 168 RVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238 (270)
Q Consensus 168 r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~ 238 (270)
....++..|..-+.+...+...+.-.....................+..+...+..++..+...+..|+..
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443334444444455555555555555555555555555444433
No 305
>KOG1655|consensus
Probab=37.76 E-value=2.1e+02 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
++..-+..+..|...++.+|..|..++-.+..+++..+.
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666677777778888888888888887777776655
No 306
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.68 E-value=2.6e+02 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 57 LEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 57 l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
...++...-.+-..++.+..++..
T Consensus 43 ~EQAr~~A~~fA~~ld~~~~kl~~ 66 (301)
T PF06120_consen 43 AEQARQEAIEFADSLDELKEKLKE 66 (301)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 333444444444444444444433
No 307
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=37.51 E-value=1.9e+02 Score=22.20 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy1411 45 TTKKNLDQA 53 (270)
Q Consensus 45 ~~~~~~~~~ 53 (270)
.++..+..+
T Consensus 26 ~~r~al~~~ 34 (158)
T PF09486_consen 26 AQRRALAAA 34 (158)
T ss_pred HHHHHHHHH
Confidence 333333333
No 308
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.22 E-value=3.3e+02 Score=24.95 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
-.+.++.+-.++.+.+.++..+..+...+....+.|......+..++
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34455555555666666655555555555555555544444444444
No 309
>KOG2391|consensus
Probab=36.88 E-value=2.9e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 56 DLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA 100 (270)
Q Consensus 56 ~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~ 100 (270)
.-+++..-..++......++.+...+...++-+.....++.++.+
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 333444444455555555555555555555555555555444444
No 310
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.85 E-value=2.1e+02 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHhhHHhHHHHHHHHHHHH
Q psy1411 5 KKKMQAMKMEKDSAMDKADTCEGQAKDA 32 (270)
Q Consensus 5 ~~kl~~l~~e~~~~~~~~~~~~~~l~~~ 32 (270)
+.++..|..+++........+...+..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444444444444
No 311
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.57 E-value=1.7e+02 Score=24.31 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 62 KALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 62 ~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
....++..++..+..|+..++....++..-+
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll 155 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELL 155 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555444
No 312
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=34.65 E-value=2.1e+02 Score=21.93 Aligned_cols=107 Identities=11% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV-SEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV 232 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~ 232 (270)
.+..+...+.......+.....+..-..++..+...-..+.. ....+..-.+.+......++..+..+...+......+
T Consensus 30 al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~i 109 (158)
T PF09486_consen 30 ALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAALRQALRAAEDEI 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444442222111 1112233334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411 233 KKLQKEVDRLEDELGLNKDRYKSLADEM 260 (270)
Q Consensus 233 ~~l~e~~~~le~~l~~~~~~~~~~~~el 260 (270)
......|..+...+.-+..+...+..-+
T Consensus 110 a~~~raIarn~a~id~~~er~~~l~r~~ 137 (158)
T PF09486_consen 110 AATRRAIARNDARIDVCRERIDRLRRAA 137 (158)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 313
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=34.41 E-value=40 Score=24.27 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGT 94 (270)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~ 94 (270)
.+...-..+..-++.+-.-...+..+...+..+......++..|+-+..+-.+
T Consensus 37 ~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~e 89 (116)
T PF05064_consen 37 EFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKE 89 (116)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444333
No 314
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.23 E-value=1.5e+02 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
..+.-.++.+...+..+...-..|...++.+...|..+..
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555566666666655554443
No 315
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=33.82 E-value=2.5e+02 Score=22.56 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy1411 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDR 168 (270)
Q Consensus 120 ~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r 168 (270)
+..+...+..++..+..++..+..+...|..+..+....+.++..+-.|
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555555666666666666555555555555555443
No 316
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.88 E-value=3.5e+02 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 51 DQAVKDLEEREKALAAAESEVAALNR 76 (270)
Q Consensus 51 ~~~~~~l~~~~~~~~~~e~~~~~l~~ 76 (270)
.-++.++..+..++..++..+.....
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 317
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.08 E-value=2.7e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q psy1411 230 KTVKKLQKEVDRLEDELGLNKDRYK 254 (270)
Q Consensus 230 ~~~~~l~e~~~~le~~l~~~~~~~~ 254 (270)
..+..+......+...+..++.++.
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 318
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.03 E-value=2e+02 Score=20.59 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1411 200 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261 (270)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld 261 (270)
+......+..-+.........+...+..-..........+..+...+..+......+...+.
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555554444444444444444444444444444444444443
No 319
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.87 E-value=3.1e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELK 184 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~ 184 (270)
-.++.+|.+.+..++.+..++..|..+..
T Consensus 165 l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 165 LEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666666666666655544
No 320
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.17 E-value=2.5e+02 Score=21.48 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411 163 EVAEDRVKSGDAKIMELEEELKVVGNSLKS 192 (270)
Q Consensus 163 ~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~ 192 (270)
+.|......+..++..|++....+...+..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555555444433
No 321
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.01 E-value=1.8e+02 Score=19.72 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 214 LAVKLKEAEARAEFAEKTVKKLQKE 238 (270)
Q Consensus 214 l~~~~~~~~~~~~~~e~~~~~l~e~ 238 (270)
++.++..+...+...+.++..|+..
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3344444444555555555555543
No 322
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.87 E-value=2.6e+02 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHH
Q psy1411 157 FVEDELEVAEDRVKSGDAKIM 177 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~~~~~~ 177 (270)
.+...|..=+..+..++.++.
T Consensus 236 ~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 236 DTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 323
>PF15556 Zwint: ZW10 interactor
Probab=29.68 E-value=2.9e+02 Score=22.08 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy1411 88 SEERSGTAT 96 (270)
Q Consensus 88 ~~~~l~~~~ 96 (270)
+..+.....
T Consensus 146 vrerq~~~q 154 (252)
T PF15556_consen 146 VRERQTGTQ 154 (252)
T ss_pred HHHHHHHHH
Confidence 333333333
No 324
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=29.42 E-value=1.6e+02 Score=19.07 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 200 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246 (270)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l 246 (270)
+..........+..+.............+...+..|...+..+...+
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554444444444444444444444333
No 325
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=29.33 E-value=1.8e+02 Score=19.58 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy1411 148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180 (270)
Q Consensus 148 ~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~ 180 (270)
|..+...+..+..-|+.++.+...+..++..|-
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333444444444444444444444443333
No 326
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.81 E-value=5e+02 Score=24.11 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=4.6
Q ss_pred hhHHHHHHHHHH
Q psy1411 247 GLNKDRYKSLAD 258 (270)
Q Consensus 247 ~~~~~~~~~~~~ 258 (270)
..+...++++..
T Consensus 416 ~al~lqlErl~~ 427 (511)
T PF09787_consen 416 NALRLQLERLET 427 (511)
T ss_pred hhccccHHHHHH
Confidence 333333343333
No 327
>PLN02939 transferase, transferring glycosyl groups
Probab=27.67 E-value=6.7e+02 Score=25.55 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 44 DTTKKNLDQAVKDLEEREKALA 65 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~ 65 (270)
+....+-..++.++.-+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (977)
T PLN02939 159 EKILTEKEALQGKINILEMRLS 180 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHhh
Confidence 3333333333333333333333
No 328
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.99 E-value=2.8e+02 Score=20.98 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411 72 AALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133 (270)
Q Consensus 72 ~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~ 133 (270)
+.+..+...++..+......+..+++.+...+..++.....+..++.........+......
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444455555555555555555555555555444445555555544444444444444
No 329
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.81 E-value=1.7e+02 Score=18.45 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=7.2
Q ss_pred HhhhhhhhHHHHHHHHHHH
Q psy1411 116 LENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 116 l~~~~~~~e~~~~~le~~l 134 (270)
|...+..++..+..+...|
T Consensus 9 L~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 330
>PHA02682 ORF080 virion core protein; Provisional
Probab=26.68 E-value=2.5e+02 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHhhHHhHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADT 24 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~ 24 (270)
.|+++|..+..-+.++......
T Consensus 212 ~ikkeladiadsvrdl~aeS~~ 233 (280)
T PHA02682 212 LIKKELADIADSVRDLNAESLS 233 (280)
T ss_pred HHHHHHHHHHHHHHhhhhhhhh
Confidence 4555555554444444333333
No 331
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.46 E-value=3.2e+02 Score=21.45 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236 (270)
Q Consensus 205 ~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~ 236 (270)
..+...+..-...+-.+...+..+...+..++
T Consensus 130 ~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 130 ENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444443
No 332
>PF14992 TMCO5: TMCO5 family
Probab=26.44 E-value=4e+02 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.367 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 63 ALAAAESEVAALNRKVQMIEED 84 (270)
Q Consensus 63 ~~~~~e~~~~~l~~r~~~le~e 84 (270)
.+...+..+.++.+.+..+.+-
T Consensus 26 ki~~~E~~iq~Le~Eit~~~~~ 47 (280)
T PF14992_consen 26 KIQEKEGAIQSLEREITKMDHI 47 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 3444444444444444444433
No 333
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=26.34 E-value=3.2e+02 Score=21.34 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDL 85 (270)
Q Consensus 71 ~~~l~~r~~~le~el 85 (270)
++.+..++..|+..+
T Consensus 127 ~ee~~~~l~~le~~~ 141 (175)
T PRK13182 127 MEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 334
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.11 E-value=3.3e+02 Score=21.41 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHhH
Q psy1411 26 EGQAKDANLRADK 38 (270)
Q Consensus 26 ~~~l~~~~~~~~~ 38 (270)
+..+..++....+
T Consensus 22 Q~KV~qYr~rc~e 34 (182)
T PF15035_consen 22 QAKVLQYRKRCAE 34 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 335
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.24 E-value=5e+02 Score=23.28 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy1411 57 LEEREKALAAAESE 70 (270)
Q Consensus 57 l~~~~~~~~~~e~~ 70 (270)
+.+.+-+...++.+
T Consensus 253 LqEEr~R~erLEeq 266 (395)
T PF10267_consen 253 LQEERYRYERLEEQ 266 (395)
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 336
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=3e+02 Score=20.73 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEA 109 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~ 109 (270)
....++.+..++..+...+..+...+..+...+..+...+..+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666655555555444
No 337
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.05 E-value=5.5e+02 Score=23.68 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1411 232 VKKLQKEVDRLEDELG 247 (270)
Q Consensus 232 ~~~l~e~~~~le~~l~ 247 (270)
+.|+++.+.....++.
T Consensus 142 l~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 142 LSPLREQLDGFRRQVQ 157 (475)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3444444444443333
No 338
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.77 E-value=1.6e+02 Score=17.30 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=7.7
Q ss_pred HHHhhHhHHHHHHHHHHH
Q psy1411 165 AEDRVKSGDAKIMELEEE 182 (270)
Q Consensus 165 ~e~r~~~~~~~~~~l~~~ 182 (270)
.+.+++.++.+|..|+..
T Consensus 17 IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444444433
No 339
>KOG1899|consensus
Probab=24.30 E-value=6.4e+02 Score=24.18 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
..+++.+..++..-..+.-+++-+..+++.-..+|..|+.=|..-...+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kL 155 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKL 155 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 3444445454444444444444444444444444444444443333333
No 340
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=24.20 E-value=5.1e+02 Score=23.03 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~ 152 (270)
.+...+..|-..+..+.......+..+..+...+..++...+.|..-+..+. .+.-+-..+..++..+. .+.|.++.
T Consensus 61 ~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~Lk-rL~MLv~a~~qL~~~~~--~r~Y~e~a 137 (383)
T PF04100_consen 61 EAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLK-RLQMLVTAVEQLKELAK--KRQYKEIA 137 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--cCCHHHHH
Confidence 3333344444444444444444444444444444444444444433322221 11222222222222222 35566655
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 153 ~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
.-+..+..=+ ..-..+.... ++..|-.++..+...|.
T Consensus 138 ~~L~av~~L~-~~F~~yksi~-~I~~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 138 SLLQAVKELL-EHFKPYKSIP-QIAELSKRIDQLQNELK 174 (383)
T ss_pred HHHHHHHHHH-HHHHcccCcH-HHHHHHHHHHHHHHHHH
Confidence 5555444333 3333333322 44444444444444443
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=23.57 E-value=6.6e+02 Score=24.06 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=4.4
Q ss_pred hhhhHHHHHHHH
Q psy1411 120 SQQDEERMDQLT 131 (270)
Q Consensus 120 ~~~~e~~~~~le 131 (270)
+..+..++..+.
T Consensus 614 l~~~~~~w~~l~ 625 (638)
T PRK10636 614 LEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 342
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.50 E-value=2.5e+02 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=7.1
Q ss_pred HHHhhHhHHHHHHHHHHHH
Q psy1411 165 AEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 165 ~e~r~~~~~~~~~~l~~~~ 183 (270)
+..++..+..++..+...+
T Consensus 10 l~~~l~~~~~q~~~l~~~~ 28 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQL 28 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 343
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.46 E-value=5.5e+02 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
..+.+..++..++..+..++..+.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555444
No 344
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.35 E-value=3.5e+02 Score=20.75 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHH
Q psy1411 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 196 (270)
.+..+..++...+..+......|...+.........+...
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~ 125 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEER 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh
Confidence 4444444555555555555555555555554444444443
No 345
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.00 E-value=5.7e+02 Score=23.17 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=4.9
Q ss_pred HHHHHHHHhHhhH
Q psy1411 6 KKMQAMKMEKDSA 18 (270)
Q Consensus 6 ~kl~~l~~e~~~~ 18 (270)
+++..|..++..+
T Consensus 334 ~~~~~l~~~~~~~ 346 (451)
T PF03961_consen 334 EKLEELEEELEEL 346 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 346
>PF14282 FlxA: FlxA-like protein
Probab=22.56 E-value=2.8e+02 Score=19.47 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy1411 205 EEYKRQIKQLA 215 (270)
Q Consensus 205 ~~~~~~~~~l~ 215 (270)
..+...|..+.
T Consensus 54 q~Lq~QI~~Lq 64 (106)
T PF14282_consen 54 QLLQAQIQQLQ 64 (106)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 347
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.45 E-value=2.9e+02 Score=19.49 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 69 SEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105 (270)
Q Consensus 69 ~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~ 105 (270)
....-+.+|+..++..+..+...+..+...+..+...
T Consensus 77 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 77 EAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555444444444444444333
No 348
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=22.06 E-value=3.2e+02 Score=19.83 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE 163 (270)
Q Consensus 120 ~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~ 163 (270)
+..+...+......+..+...+......+-++..+.++++.=.+
T Consensus 70 ~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 70 IRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443333
No 349
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.93 E-value=5e+02 Score=22.09 Aligned_cols=111 Identities=21% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH
Q psy1411 51 DQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQL 130 (270)
Q Consensus 51 ~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~l 130 (270)
......+..+...+..+..++..+......+...+......+......+..+...+. ....|-..-.-....++..
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~----r~~~L~~~g~is~~~~~~a 151 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLR----RRVPLFKKGLISREELDHA 151 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHCCCcCHHHHHHH
Q ss_pred HHHHHHHHHHHhHhhh-------------------hHHHHHhHHHHHHHHHHHH
Q psy1411 131 TNQLKEARLLAEDADA-------------------KSDEVSRKLAFVEDELEVA 165 (270)
Q Consensus 131 e~~l~~~~~~~~~~~~-------------------~~~e~~~~~~~l~~~l~~~ 165 (270)
+..+..+...+..+.. .+..+...+......+...
T Consensus 152 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 152 RKALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 350
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.81 E-value=4.2e+02 Score=21.13 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
.+..+...+..+++++..|+.=|.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 351
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.67 E-value=2.5e+02 Score=18.46 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=21.1
Q ss_pred hHhhhhHHHHHhHHHHHHHHHHH-HHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411 142 EDADAKSDEVSRKLAFVEDELEV-AEDRVKSGDAKIMELEEELKVVGNSLKS 192 (270)
Q Consensus 142 ~~~~~~~~e~~~~~~~l~~~l~~-~e~r~~~~~~~~~~l~~~~~~~~~~l~~ 192 (270)
..+..+.-.+.-++-.++..+.. .......+-.+..+|...+..+..++..
T Consensus 10 ~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 10 DKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455444442 2333334444444444444444444333
No 352
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=21.32 E-value=3.4e+02 Score=19.93 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=15.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHH
Q psy1411 117 ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156 (270)
Q Consensus 117 ~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~ 156 (270)
...+......+..+...|..++..... ..+|+.+...+.
T Consensus 87 ~~~i~~~k~~ie~lk~~L~~ak~~r~~-k~eyd~La~~I~ 125 (139)
T PF05615_consen 87 EQEIEQAKKEIEELKEELEEAKRVRQN-KEEYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 333333334444444444433333322 224544444443
No 353
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.00 E-value=4.3e+02 Score=21.03 Aligned_cols=17 Identities=6% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhHhhHHh
Q psy1411 4 IKKKMQAMKMEKDSAMD 20 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~ 20 (270)
++++|..|...+..+..
T Consensus 101 LkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 354
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.41 E-value=6.4e+02 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=11.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
..+.+..++..++..+..++..+.
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
Done!