Query psy1411
Match_columns 270
No_of_seqs 211 out of 1011
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 19:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.8 3.7E-15 1.3E-19 123.7 41.4 270 1-270 1-284 (284)
2 2efr_A General control protein 99.6 2.1E-13 7E-18 101.2 20.0 137 127-270 2-138 (155)
3 1c1g_A Tropomyosin; contractIl 99.6 1.3E-10 4.6E-15 96.0 39.7 236 26-261 47-282 (284)
4 2b9c_A Striated-muscle alpha t 99.6 3.6E-15 1.2E-19 110.6 8.3 144 74-217 1-144 (147)
5 1i84_S Smooth muscle myosin he 99.2 1.1E-10 3.9E-15 114.8 11.6 14 5-18 863-876 (1184)
6 1i84_S Smooth muscle myosin he 99.1 2E-10 6.7E-15 113.1 10.9 126 5-130 856-981 (1184)
7 3u1c_A Tropomyosin alpha-1 cha 99.1 3.7E-09 1.3E-13 73.5 14.0 97 1-125 4-100 (101)
8 3u59_A Tropomyosin beta chain; 99.0 1.2E-08 4.3E-13 71.0 13.4 97 1-125 4-100 (101)
9 2efr_A General control protein 98.8 2.2E-05 7.4E-10 58.2 23.4 118 81-198 26-143 (155)
10 1ic2_A Tropomyosin alpha chain 98.7 2.8E-07 9.4E-12 61.4 11.0 79 1-107 1-79 (81)
11 2b9c_A Striated-muscle alpha t 98.3 0.00015 5.1E-09 53.6 17.0 117 154-270 25-141 (147)
12 3na7_A HP0958; flagellar bioge 98.2 0.0011 3.8E-08 54.0 23.0 103 81-195 30-132 (256)
13 3na7_A HP0958; flagellar bioge 98.1 0.0014 4.8E-08 53.4 21.0 59 41-99 25-83 (256)
14 2v71_A Nuclear distribution pr 97.9 0.0035 1.2E-07 47.9 22.0 166 71-246 12-177 (189)
15 3u59_A Tropomyosin beta chain; 97.7 0.00087 3E-08 46.3 11.6 81 3-83 20-100 (101)
16 3u1c_A Tropomyosin alpha-1 cha 97.7 0.0035 1.2E-07 43.2 14.5 92 71-162 4-95 (101)
17 2v71_A Nuclear distribution pr 97.7 0.0091 3.1E-07 45.6 20.7 49 115-163 106-154 (189)
18 3o0z_A RHO-associated protein 97.6 0.011 3.8E-07 44.0 20.7 75 7-81 7-81 (168)
19 3vkg_A Dynein heavy chain, cyt 97.5 0.12 4.2E-06 55.6 29.2 95 14-111 1914-2008(3245)
20 2z5i_I TM, tropomyosin alpha-1 97.3 0.00057 2E-08 38.1 5.1 32 1-32 5-36 (40)
21 3o0z_A RHO-associated protein 97.3 0.033 1.1E-06 41.5 21.9 132 119-250 7-138 (168)
22 1ic2_A Tropomyosin alpha chain 97.0 0.024 8.3E-07 37.2 11.3 75 73-147 3-77 (81)
23 2z5i_A TM, general control pro 96.9 0.0029 9.9E-08 37.7 5.6 49 222-270 4-52 (52)
24 2ocy_A RAB guanine nucleotide 96.6 0.13 4.5E-06 37.8 20.2 65 111-175 72-137 (154)
25 3mtu_A Tropomyosin alpha-1 cha 96.3 0.011 3.9E-07 38.1 6.0 41 1-41 4-51 (75)
26 2e7s_A RAB guanine nucleotide 95.9 0.035 1.2E-06 39.8 7.5 68 112-179 61-129 (135)
27 2fxo_A Myosin heavy chain, car 95.9 0.29 1E-05 35.1 18.5 49 40-88 40-88 (129)
28 2dfs_A Myosin-5A; myosin-V, in 95.6 0.85 2.9E-05 44.6 18.0 30 164-193 981-1010(1080)
29 2dfs_A Myosin-5A; myosin-V, in 95.3 1.3 4.4E-05 43.4 18.1 36 152-187 983-1018(1080)
30 3oja_B Anopheles plasmodium-re 94.9 1.3 4.4E-05 40.2 16.3 69 67-135 507-575 (597)
31 2ocy_A RAB guanine nucleotide 94.8 0.81 2.8E-05 33.6 19.8 85 110-194 57-142 (154)
32 3azd_A Short alpha-tropomyosin 94.7 0.015 5.2E-07 31.9 1.8 28 1-28 6-33 (37)
33 3oja_B Anopheles plasmodium-re 94.1 1.7 5.7E-05 39.5 15.1 58 107-164 526-583 (597)
34 2eqb_B RAB guanine nucleotide 94.0 0.85 2.9E-05 30.6 13.4 38 124-161 53-91 (97)
35 2v66_B Nuclear distribution pr 93.0 1.5 5.1E-05 30.3 15.9 95 4-108 8-102 (111)
36 3mtu_E Head morphogenesis prot 92.1 1.3 4.5E-05 28.2 7.7 47 224-270 31-77 (77)
37 2jee_A YIIU; FTSZ, septum, coi 92.0 1.6 5.5E-05 28.2 10.2 31 145-175 47-77 (81)
38 2e7s_A RAB guanine nucleotide 91.5 0.64 2.2E-05 33.3 6.5 79 115-193 50-129 (135)
39 2v66_B Nuclear distribution pr 91.5 2.4 8.3E-05 29.2 14.8 36 128-163 66-101 (111)
40 3mud_A DNA repair protein XRCC 90.9 1.3 4.5E-05 33.2 8.0 49 222-270 127-175 (175)
41 4gkw_A Spindle assembly abnorm 89.7 3.9 0.00013 28.7 20.3 63 38-100 15-77 (167)
42 3hnw_A Uncharacterized protein 88.2 5.7 0.0002 28.6 11.6 57 46-102 73-129 (138)
43 3swk_A Vimentin; cytoskeleton, 88.1 4.1 0.00014 26.8 12.2 34 2-35 3-36 (86)
44 3q8t_A Beclin-1; autophagy, AT 87.9 4.5 0.00016 27.1 13.6 30 147-176 61-90 (96)
45 3ol1_A Vimentin; structural ge 86.2 6.8 0.00023 27.4 15.0 20 113-132 85-104 (119)
46 2i1j_A Moesin; FERM, coiled-co 85.6 1.4 4.8E-05 40.0 6.2 110 26-135 334-443 (575)
47 3q8t_A Beclin-1; autophagy, AT 85.5 6.4 0.00022 26.4 14.2 75 158-232 16-90 (96)
48 3bas_A Myosin heavy chain, str 85.0 6.3 0.00022 26.0 11.8 28 8-35 16-43 (89)
49 4gkw_A Spindle assembly abnorm 83.3 9.7 0.00033 26.8 21.5 49 43-91 41-89 (167)
50 2jee_A YIIU; FTSZ, septum, coi 83.3 7.1 0.00024 25.2 11.9 11 254-264 65-75 (81)
51 3oja_A Leucine-rich immune mol 81.0 28 0.00095 30.5 15.4 20 123-142 454-473 (487)
52 2pnv_A Small conductance calci 79.9 3.3 0.00011 23.2 4.0 29 163-191 12-40 (43)
53 3cvf_A Homer-3, homer protein 79.8 9.7 0.00033 24.4 9.1 24 154-177 14-37 (79)
54 3ghg_A Fibrinogen alpha chain; 79.6 32 0.0011 30.3 13.6 14 5-18 63-76 (562)
55 3l4q_C Phosphatidylinositol 3- 79.3 17 0.00059 27.0 15.9 116 20-135 10-141 (170)
56 2xzr_A Immunoglobulin-binding 78.9 12 0.0004 24.8 15.3 19 81-99 18-36 (114)
57 3i00_A HIP-I, huntingtin-inter 74.2 20 0.00067 25.1 9.9 15 4-18 20-34 (120)
58 1l8d_A DNA double-strand break 74.2 18 0.00061 24.6 11.5 6 8-13 5-10 (112)
59 1l8d_A DNA double-strand break 73.9 18 0.00062 24.6 12.4 34 205-238 67-100 (112)
60 3cvf_A Homer-3, homer protein 73.1 16 0.00054 23.5 9.6 9 20-28 13-21 (79)
61 4h22_A Leucine-rich repeat fli 71.6 20 0.00069 24.1 10.7 74 19-92 8-81 (103)
62 3nmd_A CGMP dependent protein 69.4 18 0.00062 22.7 6.0 33 159-191 32-64 (72)
63 2lw1_A ABC transporter ATP-bin 66.5 24 0.00083 23.0 8.1 7 100-106 73-79 (89)
64 2no2_A HIP-I, huntingtin-inter 66.5 28 0.00095 23.7 13.9 14 60-73 13-26 (107)
65 3s4r_A Vimentin; alpha-helix, 66.3 25 0.00087 23.2 10.8 26 240-265 59-84 (93)
66 2w83_C C-JUN-amino-terminal ki 65.5 23 0.00078 22.4 9.0 9 6-14 9-17 (77)
67 3cve_A Homer protein homolog 1 64.6 23 0.0008 22.2 10.1 37 154-190 8-44 (72)
68 3mq9_A Bone marrow stromal ant 64.0 72 0.0025 27.6 15.5 30 52-81 401-430 (471)
69 1deq_A Fibrinogen (alpha chain 62.8 69 0.0024 27.0 14.0 17 4-20 65-81 (390)
70 1jcd_A Major outer membrane li 59.1 24 0.00083 20.6 6.1 11 8-18 6-16 (52)
71 3a7p_A Autophagy protein 16; c 58.0 51 0.0017 23.9 12.2 61 34-94 68-128 (152)
72 2yy0_A C-MYC-binding protein; 56.6 16 0.00054 21.4 3.7 23 10-32 23-45 (53)
73 4h22_A Leucine-rich repeat fli 55.5 44 0.0015 22.5 9.9 33 64-96 18-50 (103)
74 3i00_A HIP-I, huntingtin-inter 55.3 50 0.0017 23.0 10.8 11 75-85 46-56 (120)
75 3mq7_A Bone marrow stromal ant 54.8 49 0.0017 22.7 14.6 22 78-99 73-94 (121)
76 3iv1_A Tumor susceptibility ge 54.3 39 0.0014 21.5 9.7 54 178-231 15-68 (78)
77 3uux_B Mitochondrial division 52.6 83 0.0028 24.7 10.6 41 70-110 164-204 (242)
78 1txp_A HnRNP C, heterogeneous 51.3 22 0.00074 17.6 3.5 23 2-24 2-24 (28)
79 3iv1_A Tumor susceptibility ge 47.5 52 0.0018 20.9 9.4 20 78-97 48-67 (78)
80 1d7m_A Cortexillin I; coiled-c 47.4 56 0.0019 21.2 14.8 13 173-185 45-57 (101)
81 2xnx_M M protein, M1-BC1; cell 46.3 79 0.0027 22.7 10.7 33 89-121 79-111 (146)
82 2yko_A LINE-1 ORF1P; RNA-bindi 46.1 52 0.0018 25.8 6.1 22 75-96 5-26 (233)
83 1fxk_A Prefoldin; archaeal pro 46.0 63 0.0022 21.5 13.0 20 244-263 79-98 (107)
84 2xdj_A Uncharacterized protein 45.6 58 0.002 21.0 9.4 9 220-228 38-46 (83)
85 1a93_B MAX protein, coiled coi 44.7 34 0.0012 17.9 3.8 27 4-30 5-31 (34)
86 2l5g_B Putative uncharacterize 42.2 43 0.0015 18.4 5.5 27 77-103 10-36 (42)
87 3c9i_A Tail needle protein GP2 40.6 1.2E+02 0.0041 23.1 13.5 48 57-104 93-140 (242)
88 1x79_B RAB GTPase binding effe 40.5 86 0.003 21.5 12.2 25 111-135 45-69 (112)
89 3trt_A Vimentin; cytoskeleton, 40.5 66 0.0022 20.1 6.7 21 58-78 52-72 (77)
90 1lwu_C Fibrinogen gamma chain; 40.3 84 0.0029 26.0 6.9 6 8-13 7-12 (323)
91 3ni0_A Bone marrow stromal ant 39.1 81 0.0028 20.8 10.8 15 204-218 69-83 (99)
92 1deq_A Fibrinogen (alpha chain 38.3 1.8E+02 0.0062 24.5 14.4 89 153-244 67-155 (390)
93 3qh9_A Liprin-beta-2; coiled-c 38.0 78 0.0027 20.2 10.7 47 53-99 24-70 (81)
94 3ghg_C Fibrinogen gamma chain; 37.9 1.9E+02 0.0066 24.7 10.6 32 4-35 36-67 (411)
95 2zqm_A Prefoldin beta subunit 37.6 93 0.0032 21.0 12.8 33 157-189 10-42 (117)
96 2oqq_A Transcription factor HY 36.4 55 0.0019 18.0 5.2 21 166-186 9-29 (42)
97 3s4r_A Vimentin; alpha-helix, 35.0 96 0.0033 20.4 12.9 33 155-187 11-43 (93)
98 3swf_A CGMP-gated cation chann 33.0 92 0.0031 19.6 7.3 22 167-188 7-28 (74)
99 3qh9_A Liprin-beta-2; coiled-c 31.6 1E+02 0.0035 19.7 10.2 51 65-115 22-72 (81)
100 3hhm_B NISH2 P85alpha; PI3KCA, 31.1 2.4E+02 0.0082 23.8 17.0 52 84-135 199-250 (373)
101 1go4_E MAD1 (mitotic arrest de 31.0 1.2E+02 0.0041 20.3 8.2 27 3-29 16-42 (100)
102 2zqm_A Prefoldin beta subunit 30.0 1.3E+02 0.0043 20.2 13.8 17 76-92 77-93 (117)
103 3c9i_A Tail needle protein GP2 29.1 1.9E+02 0.0065 22.0 16.3 67 73-139 81-147 (242)
104 3swy_A Cyclic nucleotide-gated 29.0 82 0.0028 17.8 6.6 18 169-186 7-24 (46)
105 1gk4_A Vimentin; intermediate 28.2 1.2E+02 0.0041 19.4 11.5 10 54-63 39-48 (84)
106 2dq0_A Seryl-tRNA synthetase; 27.1 3.1E+02 0.011 23.8 9.8 24 112-135 77-100 (455)
107 2z5i_A TM, general control pro 26.8 97 0.0033 17.9 5.9 18 153-170 12-29 (52)
108 3m48_A General control protein 25.4 79 0.0027 16.3 3.6 22 67-88 5-26 (33)
109 1kd8_B GABH BLL, GCN4 acid bas 24.3 87 0.003 16.5 4.4 26 66-91 5-30 (36)
110 3m9b_A Proteasome-associated A 24.0 1.5E+02 0.0052 23.4 5.5 35 39-73 59-93 (251)
111 3ajw_A Flagellar FLIJ protein; 23.9 1.9E+02 0.0065 20.2 14.9 48 120-167 76-123 (150)
112 2dq0_A Seryl-tRNA synthetase; 23.6 3.6E+02 0.012 23.3 9.7 25 47-71 37-61 (455)
113 2ke4_A CDC42-interacting prote 22.6 1.7E+02 0.006 19.3 9.2 21 3-23 19-39 (98)
114 3zwh_Q Myosin-9; Ca-binding pr 22.3 49 0.0017 18.6 1.7 25 159-183 5-29 (45)
115 1deb_A APC protein, adenomatou 22.1 1.2E+02 0.0041 17.3 6.9 6 63-68 32-37 (54)
116 3qne_A Seryl-tRNA synthetase, 21.6 4.1E+02 0.014 23.3 10.2 23 112-134 79-101 (485)
117 3ljm_A Coil Ser L9C; de novo d 21.2 86 0.0029 15.3 4.0 20 17-36 5-24 (31)
118 1uo4_A General control protein 21.0 1E+02 0.0035 16.0 3.8 24 66-89 5-28 (34)
119 1kd8_A GABH AIV, GCN4 acid bas 21.0 1E+02 0.0036 16.2 4.8 27 66-92 5-31 (36)
120 1wle_A Seryl-tRNA synthetase; 20.7 4.4E+02 0.015 23.2 11.5 21 114-134 126-146 (501)
121 3p8c_E Probable protein brick1 20.6 1.7E+02 0.0058 18.4 4.2 28 156-183 41-68 (75)
122 3pp5_A BRK1, protein brick1; t 20.2 1.7E+02 0.0058 18.3 4.4 29 156-184 41-69 (73)
123 3cl3_D NF-kappa-B essential mo 20.2 2.3E+02 0.0078 19.8 7.4 41 148-188 11-51 (130)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.82 E-value=3.7e-15 Score=123.70 Aligned_cols=270 Identities=48% Similarity=0.689 Sum_probs=199.3
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDL--------------EEREKALAA 66 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~~~~~~ 66 (270)
||.||++|..+..+++.+...+..+...+..+...+..+...+..+...+..+...+ ..+...+..
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATD 80 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888888877777777666555555444444444443333 333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhh
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADA 146 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~ 146 (270)
+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (284)
T 1c1g_A 81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555555555555555566666666666666666777667777777777
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226 (270)
Q Consensus 147 ~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 226 (270)
.+..+...+..+...+..+..++..+..++..+..++..+...+..+......+......+...+..+...+..+...+.
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 240 (284)
T 1c1g_A 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240 (284)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888888888888888888888888877777777677777778888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 227 ~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
.+...+..+...+..+...+..+...+..+...++++.+.|++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999876
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.61 E-value=2.1e-13 Score=101.25 Aligned_cols=137 Identities=45% Similarity=0.602 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q psy1411 127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE 206 (270)
Q Consensus 127 ~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (270)
++.++.+|+++ ..++.++|+++.+ ++.+|.+++.|++.++.++..|++.+..+..++++++...+.+..+.+.
T Consensus 2 ~~~lE~qlkea---ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~ 74 (155)
T 2efr_A 2 MKQLEDKVEEL---LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDK 74 (155)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 56778888766 7889999999888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 207 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 207 ~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
|...|..+...++++..+++.+++.+.+|+..+..++..+...+.++..+..+||+++++|++|
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.61 E-value=1.3e-10 Score=95.96 Aligned_cols=236 Identities=15% Similarity=0.192 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105 (270)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~ 105 (270)
...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (284)
T 1c1g_A 47 QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555555566666666777777777777777777777777777777777777777766666666666
Q ss_pred HhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy1411 106 ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185 (270)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~ 185 (270)
+..+...+..+...+..+...+..+...+..+...+......+..+...+..+...+..+..++..+..++..+...+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (284)
T 1c1g_A 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666667777666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1411 186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261 (270)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld 261 (270)
+...+..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666655555666666677777777777777777777777777777777777777777777777776665553
No 4
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.59 E-value=3.6e-15 Score=110.60 Aligned_cols=144 Identities=47% Similarity=0.633 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHh
Q psy1411 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSR 153 (270)
Q Consensus 74 l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~ 153 (270)
+.+|+..+++++++...++.....++..+++..++..+.++.|+++.....+.+..++.+|+.+...+.++.++|+++.+
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~R 80 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 80 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVK 217 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 217 (270)
++.+++.+|.+++.|++.++.++..|+..+..+.+++++++.+.+.++.+.+.|...|..+..+
T Consensus 81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~k 144 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKL 144 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876543
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.17 E-value=1.1e-10 Score=114.75 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.4
Q ss_pred HHHHHHHHHhHhhH
Q psy1411 5 KKKMQAMKMEKDSA 18 (270)
Q Consensus 5 ~~kl~~l~~e~~~~ 18 (270)
+.++..+...+..+
T Consensus 863 ~~eL~el~~~L~~l 876 (1184)
T 1i84_S 863 DEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.12 E-value=2e-10 Score=113.11 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred HHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84 (270)
Q Consensus 5 ~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~e 84 (270)
.++|..+..++..+...+..++..+..++..+..+..+...+...+......+..+...+..+......+..++..+..+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555555555555555555555554444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH
Q psy1411 85 LEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQL 130 (270)
Q Consensus 85 l~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~l 130 (270)
+......+..+...+..++..+..+...+..++..+..+..++..+
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~l 981 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981 (1184)
T ss_dssp HHHHHHC---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333333333333333333333333333333333333
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=99.11 E-value=3.7e-09 Score=73.51 Aligned_cols=97 Identities=32% Similarity=0.433 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
||+||+||..|+.+.+.+.++++.++..+..++.. ...++.++.++++|+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~----------------------------~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEER----------------------------SKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999877777666544 46677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE 125 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~ 125 (270)
++.+++.+...+......+...+.....++..+..|..+++.+++
T Consensus 56 lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 56 TEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999898888888888877654
No 8
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=99.02 E-value=1.2e-08 Score=71.00 Aligned_cols=97 Identities=37% Similarity=0.485 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
||+||+||..|+.+.+.+.++++.++..+..++.. ...++.++.++.+++..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~----------------------------~~~~E~ei~sL~kKiq~ 55 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDR----------------------------CKQLEEEQQGLQKKLKG 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999888777766554 35566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE 125 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~ 125 (270)
++.+++.+...+..+...++..+.....++..+..|..+++.+++
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999888888888888776643
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.75 E-value=2.2e-05 Score=58.25 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVED 160 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~ 160 (270)
++.++.+.+++......++..++..+....+.++.++..-......-+.++.++..+...+.++...++.+.+.+..++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999998988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE 198 (270)
Q Consensus 161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 198 (270)
.+++++..+.........+...++..-..|.++..+.-
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~ 143 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNY 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 99999999999999988888888888777777655543
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.71 E-value=2.8e-07 Score=61.38 Aligned_cols=79 Identities=41% Similarity=0.545 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~ 80 (270)
||+||+||..|+.+.+.+.++++.++..+..++.. ...++.++.++.+++..
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~----------------------------~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEER----------------------------SKQLEDELVALQKKLKG 52 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhhHHHHHHHHHHHHH
Confidence 99999999999999999999998877777665444 46677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAAD 107 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~ 107 (270)
++.+++.+...+..+..+++.++..+.
T Consensus 53 lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 53 TEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988888776543
No 11
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=98.27 E-value=0.00015 Score=53.58 Aligned_cols=117 Identities=24% Similarity=0.300 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~ 233 (270)
++..++...+..++....++.+...-.+++..+..+|+.+....+....+.+.....+..+...+..+..++..++..+.
T Consensus 25 kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 25 KLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455566666677777778888888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 234 KLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 234 ~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
.|...+..+.+.+..++..-..+...-+.+...|..+
T Consensus 105 eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 105 ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888877643
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.22 E-value=0.0011 Score=54.00 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHH
Q psy1411 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVED 160 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~ 160 (270)
+-.++..+...+..+...+..+...+..+...+..++..+......+.....++...+ ..+.| ..+..
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE~-------~aL~k 97 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SEREL-------RSLNI 97 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSHH-------HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHH-------HHHHH
Confidence 3344444444444444444444444444444444444555555555555544443111 22333 44444
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV 195 (270)
Q Consensus 161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~ 195 (270)
++..+..++..++..+..+..+++.+...+..+..
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555444444444333
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.08 E-value=0.0014 Score=53.40 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 41 VDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
..+..+...+..+...+..+...+..+...+..+...+..++.++..+...+.....++
T Consensus 25 ~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444333
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.94 E-value=0.0035 Score=47.92 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE 150 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e 150 (270)
+.-|......+...+..++..+.+.++.-.+++..++ ..+..++.+...+...+..+...+...+..+.......
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~-- 86 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS-- 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444444444444444444444444444444443332 45556666666666666666555555555554443332
Q ss_pred HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 151 VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK 230 (270)
Q Consensus 151 ~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ 230 (270)
...+..+..++..+......+..++..|+-.-+.+....-......+++..++....+....++..+.+ -..+..
T Consensus 87 -~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E----Ke~l~~ 161 (189)
T 2v71_A 87 -YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE----KESLLV 161 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 345677777777777777777777777777777777777777777777777777777777777777664 223444
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1411 231 TVKKLQKEVDRLEDEL 246 (270)
Q Consensus 231 ~~~~l~e~~~~le~~l 246 (270)
.+..|+..+..+..++
T Consensus 162 ~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 162 SVQRLKDEARDLRQEL 177 (189)
T ss_dssp CC--------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.72 E-value=0.00087 Score=46.32 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE 82 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le 82 (270)
...-+.+.+...+..+..++..++..+..+...+..++.+++.+...+..+...+.........++.++.++.+|+..++
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677777888888888999999999999999999999999999999999999999999999999999999999886
Q ss_pred H
Q psy1411 83 E 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 100 E 100 (101)
T 3u59_A 100 E 100 (101)
T ss_dssp T
T ss_pred c
Confidence 4
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.71 E-value=0.0035 Score=43.20 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE 150 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e 150 (270)
++.+..++..+..+.+.+......+...+..++.....++.++..|..++..++..++.+...|..+...+.........
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888888888888888888888888888888888888887776666666555544
Q ss_pred HHhHHHHHHHHH
Q psy1411 151 VSRKLAFVEDEL 162 (270)
Q Consensus 151 ~~~~~~~l~~~l 162 (270)
+...+.++...+
T Consensus 84 aE~ev~~L~Rri 95 (101)
T 3u1c_A 84 AESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.71 E-value=0.0091 Score=45.62 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE 163 (270)
Q Consensus 115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~ 163 (270)
.+...+..++..-+.++.........+.+...+|..+--+...++++++
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433344444444444444444444444444
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.61 E-value=0.011 Score=44.04 Aligned_cols=75 Identities=9% Similarity=0.043 Sum_probs=34.9
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMI 81 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~l 81 (270)
|+-.|.+++..+.+.+..-......+++...++......+.....+++..+..+......++.++..++..+..-
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555554444444444444444444444444444444444444444444443333
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.53 E-value=0.12 Score=55.55 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=38.5
Q ss_pred hHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG 93 (270)
Q Consensus 14 e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~ 93 (270)
++.....++...=..+.++...+..++.++...+..+.....+...+-..+..-..+++. +...+...-..+.....
T Consensus 1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~---~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A 1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI---KQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333334444444444444555555555555555555554444444433333332222222 22222222233333334
Q ss_pred HHHHHHHHHHHHHhHHHH
Q psy1411 94 TATAKLAEASQAADEANR 111 (270)
Q Consensus 94 ~~~~~l~~~e~~~~~~~~ 111 (270)
++.+.-..++.+++++.+
T Consensus 1991 ei~~~k~~~e~dL~~A~P 2008 (3245)
T 3vkg_A 1991 EIAVQKVKAYADLEKAEP 2008 (3245)
T ss_dssp HHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 444444555555555543
No 20
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=97.32 E-value=0.00057 Score=38.07 Aligned_cols=32 Identities=47% Similarity=0.726 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDA 32 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~ 32 (270)
||+||+||..|+.+.+.+.++++.++......
T Consensus 5 MdAIKKKMq~lK~ekd~A~drAe~~E~~~k~~ 36 (40)
T 2z5i_I 5 MDAIKKKMQMLKLDKENALDRAEQLENEVARL 36 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 89999999999999999999999988887654
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.26 E-value=0.033 Score=41.49 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=79.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE 198 (270)
Q Consensus 119 ~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 198 (270)
++..++..++.+...|..-......+.....++...+..++..+.++..++..+...-..|+..+..+...|..-.....
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~ 86 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG 86 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444444455555566666666666666666666666666677777666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy1411 199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNK 250 (270)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~ 250 (270)
........++..+..+..++.........+......|.+.+..++.....++
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555556666667777776666666666666666666666666666555444
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.97 E-value=0.024 Score=37.22 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK 147 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~ 147 (270)
.+..++..+..+.+.+..++..+...+..++.....++..+..+..++..++..++.+...+..+...+......
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888888877777776666665544
No 23
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=96.89 E-value=0.0029 Score=37.70 Aligned_cols=49 Identities=33% Similarity=0.514 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
-.+.+.+++.+.+|+..++.++.++...+.++..+..++|++++++++|
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~~~ 52 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMTSI 52 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999999999999999999999999875
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.60 E-value=0.13 Score=37.84 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=31.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411 111 RMCKVLENRSQQDEERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175 (270)
Q Consensus 111 ~~~~~l~~~~~~~e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~ 175 (270)
......+.....++.+++.|... |.+++.-+.........+..+...+...+.+....+..+..+
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666555 444444444444444444444444444444444433333333
No 25
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=96.31 E-value=0.011 Score=38.10 Aligned_cols=41 Identities=41% Similarity=0.647 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHH-------HHHHHHHHHhHhHh
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEG-------QAKDANLRADKVEV 41 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 41 (270)
||.||++|..|+.+.+.+.++++.++. .+..++.-.+....
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999988 77777666555443
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.95 E-value=0.035 Score=39.78 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l 179 (270)
.....+.....++.+++.|... |.+++.-+..+......+..+...+...+.+.+..+..+..++..|
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666665 5566666666666666666666666666666655555555544433
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.91 E-value=0.29 Score=35.09 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 40 EVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS 88 (270)
Q Consensus 40 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~ 88 (270)
......+......+...+..-...+.+++..+..+..+...++..+..+
T Consensus 40 e~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444333333333333
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.57 E-value=0.85 Score=44.59 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=12.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411 164 VAEDRVKSGDAKIMELEEELKVVGNSLKSL 193 (270)
Q Consensus 164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~ 193 (270)
.+...+..++..+..+...+..+..+.+.+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.27 E-value=1.3 Score=43.37 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q psy1411 152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVG 187 (270)
Q Consensus 152 ~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~ 187 (270)
..++..++.++..+...+..+......+++....+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444544444444
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.89 E-value=1.3 Score=40.21 Aligned_cols=69 Identities=4% Similarity=0.040 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
+...+..+..+...+...+......+......++.++.+...++..+.....++..+..+...+...++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444445544454444444444444444444444444444444444444444444444
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.85 E-value=0.81 Score=33.63 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh-HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhh
Q psy1411 110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK-SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGN 188 (270)
Q Consensus 110 ~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~-~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~ 188 (270)
...+..|...+..-......++.....+...++++... |++++..+.........++.+...+..++......+..+..
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555444443 45555555555555555555555555555555555555555
Q ss_pred hHhhHH
Q psy1411 189 SLKSLE 194 (270)
Q Consensus 189 ~l~~~~ 194 (270)
++..+.
T Consensus 137 ql~~LK 142 (154)
T 2ocy_A 137 QLKNLK 142 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 32
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=94.69 E-value=0.015 Score=31.86 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhHhhHHhHHHHHHHH
Q psy1411 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQ 28 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~ 28 (270)
|+.||+||..|..+++.+++++..+...
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988776544
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.06 E-value=1.7 Score=39.46 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHH
Q psy1411 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEV 164 (270)
Q Consensus 107 ~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~ 164 (270)
..............+.++.++..++..+...+....++..+......+++.+...+.+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444444455555555555555555555555555555555566666555543
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.04 E-value=0.85 Score=30.58 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=14.6
Q ss_pred HHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHH
Q psy1411 124 EERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDE 161 (270)
Q Consensus 124 e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~ 161 (270)
+.+++.|... |.+++.-+.........+..+...|...
T Consensus 53 e~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 53 NKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 3333333333333333333333333333
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.03 E-value=1.5 Score=30.28 Aligned_cols=95 Identities=21% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEE 83 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~ 83 (270)
++.+...|..+++.+..++...... .-..+..++..+..+...-..+...+-++++..+.+.+..-....
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~ 77 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIV 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 4556666777777766666553322 122233444444444444555555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1411 84 DLEKSEERSGTATAKLAEASQAADE 108 (270)
Q Consensus 84 el~~~~~~l~~~~~~l~~~e~~~~~ 108 (270)
.+..++..+..+-++..-++..+.+
T Consensus 78 SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555555555543
No 36
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=92.12 E-value=1.3 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 224 RAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 224 ~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
.+..+..........|+.++.++...+.++..+..++|+++.++++|
T Consensus 31 ~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm 77 (77)
T 3mtu_E 31 ALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Confidence 34455667777888899999999999999999999999999999875
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.04 E-value=1.6 Score=28.22 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=17.8
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411 145 DAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175 (270)
Q Consensus 145 ~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~ 175 (270)
....+.+......+..+...|..|+..+=.+
T Consensus 47 ~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 47 QHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344555566666777777766665443
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.54 E-value=0.64 Score=33.28 Aligned_cols=79 Identities=20% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh-HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAK-SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193 (270)
Q Consensus 115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~-~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~ 193 (270)
.|...+..-......++.....+...++++... |++++..+.........++.+...+..++......+..+..+|..+
T Consensus 50 ~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 50 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp THHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444432 4555555555555555555555555555555555555554444443
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.49 E-value=2.4 Score=29.22 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411 128 DQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE 163 (270)
Q Consensus 128 ~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~ 163 (270)
+.++..-......+.+...+|..+--+...|+.+++
T Consensus 66 DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 66 DDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444
No 40
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=90.93 E-value=1.3 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270 (270)
Q Consensus 222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~ 270 (270)
+.-+..+...+..++..+..++.++.....++..+..++|++++++++|
T Consensus 127 reli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~~~ 175 (175)
T 3mud_A 127 RELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLELNNM 175 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445577899999999999999999999999999999999999999876
No 41
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.74 E-value=3.9 Score=28.73 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=29.8
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 38 KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA 100 (270)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~ 100 (270)
+++.+.++++.++...+..+.-.-.=+..-...+..++.|...-..++..+......++..++
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444444444444444555555555445555555554444443333
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.20 E-value=5.7 Score=28.61 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102 (270)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~ 102 (270)
++.....+...+......+..+..++..+..++..+..++..+...+..++.++..+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444333333
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.07 E-value=4.1 Score=26.75 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHH
Q psy1411 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLR 35 (270)
Q Consensus 2 ~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~ 35 (270)
..++++|+.+..+...+....+.+...+..++..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444444444433333
No 44
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.91 E-value=4.5 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=12.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411 147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176 (270)
Q Consensus 147 ~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~ 176 (270)
.|....+.+-.+..++..+...+.-+..++
T Consensus 61 eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 61 EYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343334444444444444444444433333
No 45
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.21 E-value=6.8 Score=27.39 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=8.7
Q ss_pred HHHHhhhhhhhHHHHHHHHH
Q psy1411 113 CKVLENRSQQDEERMDQLTN 132 (270)
Q Consensus 113 ~~~l~~~~~~~e~~~~~le~ 132 (270)
.-.|+.++..+.+++..+..
T Consensus 85 r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 46
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.61 E-value=1.4 Score=39.95 Aligned_cols=110 Identities=11% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105 (270)
Q Consensus 26 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~ 105 (270)
+....++..++..++.+...++..+...+.....+..+...++.+...+..+...++....++........+.-..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~ 413 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDE 413 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555444433333334444
Q ss_pred HhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 106 ADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
+.++...+..+......-..+...+...+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 443 (575)
T 2i1j_A 414 IRAKQEEVSRIQQEVELKDSETRRLQEEVE 443 (575)
T ss_dssp ----------------------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333444444433333
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.47 E-value=6.4 Score=26.40 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV 232 (270)
Q Consensus 158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~ 232 (270)
+..+-..+...+..++..-..+...+..+......++.....+......+.-.+..+...+..+..++......+
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444444444444444444444444444444433333
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.03 E-value=6.3 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=10.9
Q ss_pred HHHHHHhHhhHHhHHHHHHHHHHHHHHH
Q psy1411 8 MQAMKMEKDSAMDKADTCEGQAKDANLR 35 (270)
Q Consensus 8 l~~l~~e~~~~~~~~~~~~~~l~~~~~~ 35 (270)
|..+..++..+...+...+....+++..
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~ 43 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQ 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333
No 49
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=83.30 E-value=9.7 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEER 91 (270)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~ 91 (270)
+..-+..+++++..-.--++.+..+..+...+++.+......+.+...+
T Consensus 41 L~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 41 LREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence 3333444445555555555666666677777777777666666554443
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.30 E-value=7.1 Score=25.18 Aligned_cols=11 Identities=0% Similarity=0.271 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy1411 254 KSLADEMDSTF 264 (270)
Q Consensus 254 ~~~~~eld~~~ 264 (270)
..+...++.++
T Consensus 65 ~~wq~Rl~~LL 75 (81)
T 2jee_A 65 NGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.99 E-value=28 Score=30.46 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy1411 123 DEERMDQLTNQLKEARLLAE 142 (270)
Q Consensus 123 ~e~~~~~le~~l~~~~~~~~ 142 (270)
+...+..+...+..+...+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHH
Confidence 33333333333333333333
No 52
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=79.92 E-value=3.3 Score=23.25 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=17.0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 163 EVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 163 ~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
.++..|.+.++.++..|+.+++.+...+.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666555544
No 53
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.79 E-value=9.7 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIM 177 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~ 177 (270)
+++.++..-..|+.++..++.++.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333333334443333333333
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.60 E-value=32 Score=30.35 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=6.2
Q ss_pred HHHHHHHHHhHhhH
Q psy1411 5 KKKMQAMKMEKDSA 18 (270)
Q Consensus 5 ~~kl~~l~~e~~~~ 18 (270)
++.|..|+.+++.+
T Consensus 63 tkrINELKnqLEdl 76 (562)
T 3ghg_A 63 TNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 55
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=79.27 E-value=17 Score=27.04 Aligned_cols=116 Identities=14% Similarity=0.223 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H
Q psy1411 20 DKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE----------------E 83 (270)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le----------------~ 83 (270)
...+++...+..+..++.......+.+-.....+...+.--+..+..+...+.-....+..-+ .
T Consensus 10 ~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~ 89 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEK 89 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHH
Confidence 345566667777777777777777777777777777777666666666666665555543222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 84 DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 84 el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
++..+....+.+...+..+......+...+.........++..+..+...+-
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~ 141 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM 141 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4555667777777888888777777777777777777777777777766654
No 56
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=78.85 E-value=12 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1411 81 IEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 81 le~el~~~~~~l~~~~~~l 99 (270)
+..+..++..-+..+...+
T Consensus 18 ~~~~~~ri~~aig~~d~ri 36 (114)
T 2xzr_A 18 IENEIARIKKLIGAIDGRV 36 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhhhhHHH
Confidence 3333333333333333333
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.22 E-value=20 Score=25.08 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHhhH
Q psy1411 4 IKKKMQAMKMEKDSA 18 (270)
Q Consensus 4 i~~kl~~l~~e~~~~ 18 (270)
+++.|+.|+.+++.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.21 E-value=18 Score=24.63 Aligned_cols=6 Identities=0% Similarity=0.440 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1411 8 MQAMKM 13 (270)
Q Consensus 8 l~~l~~ 13 (270)
+..+..
T Consensus 5 ~~~~~~ 10 (112)
T 1l8d_A 5 LEELET 10 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 59
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.87 E-value=18 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238 (270)
Q Consensus 205 ~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~ 238 (270)
..+...+..+...+..+...+..+...+..++..
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.10 E-value=16 Score=23.47 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q psy1411 20 DKADTCEGQ 28 (270)
Q Consensus 20 ~~~~~~~~~ 28 (270)
.+...++..
T Consensus 13 ~klq~~E~r 21 (79)
T 3cvf_A 13 QKVQDLETR 21 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.61 E-value=20 Score=24.12 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 19 MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
++++..+--....+......+.=+++.+++.+.+.+..+..+.+...+....+..+.+-+..+...+..+...+
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443344444444444555566666666666666666666666666666666665655555555555444
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.35 E-value=18 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
..+|..-+.++..++.++...+..+..+...|.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433
No 63
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=66.50 E-value=24 Score=23.01 Aligned_cols=7 Identities=14% Similarity=-0.054 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy1411 100 AEASQAA 106 (270)
Q Consensus 100 ~~~e~~~ 106 (270)
+.+...+
T Consensus 73 e~~~erW 79 (89)
T 2lw1_A 73 EQAFERW 79 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 64
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.49 E-value=28 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1411 60 REKALAAAESEVAA 73 (270)
Q Consensus 60 ~~~~~~~~e~~~~~ 73 (270)
..+.++........
T Consensus 13 ~~KqL~~~~q~~~e 26 (107)
T 2no2_A 13 VTKQVSMARQAQVD 26 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 65
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.32 E-value=25 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=11.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411 240 DRLEDELGLNKDRYKSLADEMDSTFA 265 (270)
Q Consensus 240 ~~le~~l~~~~~~~~~~~~eld~~~~ 265 (270)
..+...+..+.....++..+++++..
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 66
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=65.49 E-value=23 Score=22.38 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q psy1411 6 KKMQAMKME 14 (270)
Q Consensus 6 ~kl~~l~~e 14 (270)
+.+++|..+
T Consensus 9 kevEnLi~E 17 (77)
T 2w83_C 9 REVENLILE 17 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 67
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.61 E-value=23 Score=22.20 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhH
Q psy1411 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSL 190 (270)
Q Consensus 154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l 190 (270)
+++.++.+-..|+.++..++.++..-......+..++
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333333333
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.99 E-value=72 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 52 QAVKDLEEREKALAAAESEVAALNRKVQMI 81 (270)
Q Consensus 52 ~~~~~l~~~~~~~~~~e~~~~~l~~r~~~l 81 (270)
.+++++.+++..+.+++.+..+..+-.-.|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 344444444444444444444444333333
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.82 E-value=69 Score=27.02 Aligned_cols=17 Identities=0% Similarity=0.022 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHhhHHh
Q psy1411 4 IKKKMQAMKMEKDSAMD 20 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~ 20 (270)
|+.+|+.|+..++.+..
T Consensus 65 ~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445444444433
No 70
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.08 E-value=24 Score=20.56 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.0
Q ss_pred HHHHHHhHhhH
Q psy1411 8 MQAMKMEKDSA 18 (270)
Q Consensus 8 l~~l~~e~~~~ 18 (270)
|+.|..++..+
T Consensus 6 i~~Lss~V~~L 16 (52)
T 1jcd_A 6 ADQASSDAQTA 16 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.03 E-value=51 Score=23.92 Aligned_cols=61 Identities=5% Similarity=0.120 Sum_probs=37.0
Q ss_pred HHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 34 LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGT 94 (270)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~ 94 (270)
..+..+...+..+...+.++...+.+-.+.+..+..++..+......++..+..++.+-..
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666666666666666666666666666554433
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.65 E-value=16 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=9.3
Q ss_pred HHHHhHhhHHhHHHHHHHHHHHH
Q psy1411 10 AMKMEKDSAMDKADTCEGQAKDA 32 (270)
Q Consensus 10 ~l~~e~~~~~~~~~~~~~~l~~~ 32 (270)
.|+.+...+..++..+...+.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 73
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.51 E-value=44 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 64 LAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96 (270)
Q Consensus 64 ~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~ 96 (270)
..++-++-.++.=.+..|.+.+...++.+..+.
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 74
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.32 E-value=50 Score=22.99 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy1411 75 NRKVQMIEEDL 85 (270)
Q Consensus 75 ~~r~~~le~el 85 (270)
..++..|+.++
T Consensus 46 ~~~i~~Le~eL 56 (120)
T 3i00_A 46 KGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.77 E-value=49 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~~l 99 (270)
+..+++++..+...+....+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333
No 76
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.26 E-value=39 Score=21.51 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKT 231 (270)
Q Consensus 178 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~ 231 (270)
.+.+.+.....++.++.....++......+..-+..+..+...+...+.-+...
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555555555555555555555544444444333
No 77
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=52.63 E-value=83 Score=24.71 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1411 70 EVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEAN 110 (270)
Q Consensus 70 ~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~ 110 (270)
.++-+.-|-..+..++.++...++.+.....-+...++.++
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444333333333333333333
No 78
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=51.26 E-value=22 Score=17.60 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhHhhHHhHHHH
Q psy1411 2 DAIKKKMQAMKMEKDSAMDKADT 24 (270)
Q Consensus 2 ~~i~~kl~~l~~e~~~~~~~~~~ 24 (270)
..||+++.+++..++.+..+++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888887666543
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=47.48 E-value=52 Score=20.94 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1411 78 VQMIEEDLEKSEERSGTATA 97 (270)
Q Consensus 78 ~~~le~el~~~~~~l~~~~~ 97 (270)
+..++.+...+...+..+..
T Consensus 48 i~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344344444433333
No 80
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=47.35 E-value=56 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy1411 173 DAKIMELEEELKV 185 (270)
Q Consensus 173 ~~~~~~l~~~~~~ 185 (270)
..++..++.+++.
T Consensus 45 ~~~i~el~akidd 57 (101)
T 1d7m_A 45 EKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 81
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=46.30 E-value=79 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy1411 89 EERSGTATAKLAEASQAADEANRMCKVLENRSQ 121 (270)
Q Consensus 89 ~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~ 121 (270)
...+......+..+...+..+......++....
T Consensus 79 r~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 79 RNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344433333
No 82
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=46.07 E-value=52 Score=25.77 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 75 NRKVQMIEEDLEKSEERSGTAT 96 (270)
Q Consensus 75 ~~r~~~le~el~~~~~~l~~~~ 96 (270)
..|+..+++.+..++++++++.
T Consensus 5 nsRvd~~EErIs~le~rleei~ 26 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIK 26 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 83
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.02 E-value=63 Score=21.46 Aligned_cols=20 Identities=0% Similarity=-0.077 Sum_probs=7.3
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q psy1411 244 DELGLNKDRYKSLADEMDST 263 (270)
Q Consensus 244 ~~l~~~~~~~~~~~~eld~~ 263 (270)
..+..+..+...+...+..+
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 84
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.65 E-value=58 Score=20.98 Aligned_cols=9 Identities=0% Similarity=-0.067 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy1411 220 EAEARAEFA 228 (270)
Q Consensus 220 ~~~~~~~~~ 228 (270)
.++..++..
T Consensus 38 ~LRGqiE~~ 46 (83)
T 2xdj_A 38 SLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 333333333
No 85
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.69 E-value=34 Score=17.95 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAK 30 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~ 30 (270)
+++|.....++++++...-..++..+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 567777777777777665555554443
No 86
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.25 E-value=43 Score=18.44 Aligned_cols=27 Identities=7% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 77 KVQMIEEDLEKSEERSGTATAKLAEAS 103 (270)
Q Consensus 77 r~~~le~el~~~~~~l~~~~~~l~~~e 103 (270)
++..+..++...+..+..++.++..++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444444443
No 87
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=40.63 E-value=1.2e+02 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQ 104 (270)
Q Consensus 57 l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~ 104 (270)
+..-..++...+..+..+.-|+...+.++.-+...+..+..++...+.
T Consensus 93 l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et 140 (242)
T 3c9i_A 93 VDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAEN 140 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhccccccccc
Confidence 333333444444444444444444444444444444333333333333
No 88
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.54 E-value=86 Score=21.47 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=11.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 111 RMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 111 ~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
..+..|..++...+..+..+...|.
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 89
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.46 E-value=66 Score=20.07 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1411 58 EEREKALAAAESEVAALNRKV 78 (270)
Q Consensus 58 ~~~~~~~~~~e~~~~~l~~r~ 78 (270)
......+.++...+.++...+
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444333
No 90
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.26 E-value=84 Score=26.01 Aligned_cols=6 Identities=17% Similarity=0.130 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1411 8 MQAMKM 13 (270)
Q Consensus 8 l~~l~~ 13 (270)
...|..
T Consensus 7 ~~~~~~ 12 (323)
T 1lwu_C 7 VQKILE 12 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 91
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=39.14 E-value=81 Score=20.77 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1411 204 VEEYKRQIKQLAVKL 218 (270)
Q Consensus 204 ~~~~~~~~~~l~~~~ 218 (270)
..++...|..+...+
T Consensus 69 v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 69 IKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 92
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.33 E-value=1.8e+02 Score=24.54 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV 232 (270)
Q Consensus 153 ~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~ 232 (270)
.++..|...|....+.....-.-+..+..-+..-...... ....+.+-.+.++..+..++......-..+..++.-+
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~d---ndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANN---NDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444444443333333333322222222 2222333334444444444444333333333333333
Q ss_pred HHHHHHHHHHHH
Q psy1411 233 KKLQKEVDRLED 244 (270)
Q Consensus 233 ~~l~e~~~~le~ 244 (270)
..+...+.+|+.
T Consensus 144 ~~q~~kiqRLE~ 155 (390)
T 1deq_A 144 RDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 93
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.02 E-value=78 Score=20.21 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 53 AVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99 (270)
Q Consensus 53 ~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l 99 (270)
+-.++..++.++..++++-.....++.....++..+...+..-.+.+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 33445555555555565555555555555555555555554444333
No 94
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=37.86 E-value=1.9e+02 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHH
Q psy1411 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLR 35 (270)
Q Consensus 4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~ 35 (270)
|++.|..|...++.+...-..+..-+..+...
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 55566666666666655555555555544443
No 95
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.60 E-value=93 Score=20.97 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhh
Q psy1411 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNS 189 (270)
Q Consensus 157 ~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~ 189 (270)
.+-.....+..++..+..++..+...+.....-
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~ 42 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKA 42 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 96
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.42 E-value=55 Score=17.97 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=8.0
Q ss_pred HHhhHhHHHHHHHHHHHHHHH
Q psy1411 166 EDRVKSGDAKIMELEEELKVV 186 (270)
Q Consensus 166 e~r~~~~~~~~~~l~~~~~~~ 186 (270)
+.+...++.+..+|++++.-+
T Consensus 9 E~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.00 E-value=96 Score=20.37 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q psy1411 155 LAFVEDELEVAEDRVKSGDAKIMELEEELKVVG 187 (270)
Q Consensus 155 ~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~ 187 (270)
++.|...+...-+++..++.+-..|+..+..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666665544
No 98
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.96 E-value=92 Score=19.55 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=8.5
Q ss_pred HhhHhHHHHHHHHHHHHHHHhh
Q psy1411 167 DRVKSGDAKIMELEEELKVVGN 188 (270)
Q Consensus 167 ~r~~~~~~~~~~l~~~~~~~~~ 188 (270)
.++..++..+.-|..++..+-.
T Consensus 7 EKv~~LE~sld~LQTrfARLLa 28 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILA 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444333333
No 99
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.61 E-value=1e+02 Score=19.66 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1411 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115 (270)
Q Consensus 65 ~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~ 115 (270)
..+-+++..+.-|++.++.+-...+..+....+.+..+...+..-+.++..
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence 455566666666666666666666666655555555554444444433333
No 100
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=31.14 E-value=2.4e+02 Score=23.78 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 84 DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 84 el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
++..+....+.+..++.++......+...+.........++.++..+.-.+-
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ 250 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLI 250 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4455666666666666666666666666666666666666666666655553
No 101
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.98 E-value=1.2e+02 Score=20.28 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHhhHHhHHHHHHHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKADTCEGQA 29 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l 29 (270)
.++++|+.|..+.+.+..+.+.++..+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444443
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.98 E-value=1.3e+02 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1411 76 RKVQMIEEDLEKSEERS 92 (270)
Q Consensus 76 ~r~~~le~el~~~~~~l 92 (270)
.+...++..+..+...+
T Consensus 77 ~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 77 EKIETLEVRLNALERQE 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 103
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.14 E-value=1.9e+02 Score=22.04 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy1411 73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARL 139 (270)
Q Consensus 73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~ 139 (270)
..+.|+..++.++..-+.++......+..++-.+..++..+..+..++..++..+...+..+..+..
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 3344444444444444444444444455555555555566666666666666666666666654443
No 104
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.05 E-value=82 Score=17.77 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=6.6
Q ss_pred hHhHHHHHHHHHHHHHHH
Q psy1411 169 VKSGDAKIMELEEELKVV 186 (270)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~ 186 (270)
+..++..+.-|..++..+
T Consensus 7 v~~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 105
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.23 E-value=1.2e+02 Score=19.37 Aligned_cols=10 Identities=0% Similarity=0.262 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy1411 54 VKDLEEREKA 63 (270)
Q Consensus 54 ~~~l~~~~~~ 63 (270)
+..+..++..
T Consensus 39 E~eL~~~r~e 48 (84)
T 1gk4_A 39 QDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 106
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.15 E-value=3.1e+02 Score=23.78 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQLK 135 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l~ 135 (270)
..+.+..++..++..+..++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 107
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.81 E-value=97 Score=17.89 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHhhH
Q psy1411 153 RKLAFVEDELEVAEDRVK 170 (270)
Q Consensus 153 ~~~~~l~~~l~~~e~r~~ 170 (270)
+.+..++..+++++..+.
T Consensus 12 RsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444433333
No 108
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.41 E-value=79 Score=16.34 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1411 67 AESEVAALNRKVQMIEEDLEKS 88 (270)
Q Consensus 67 ~e~~~~~l~~r~~~le~el~~~ 88 (270)
++..++.+-.+...++.++.++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444444443
No 109
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.29 E-value=87 Score=16.47 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 66 AAESEVAALNRKVQMIEEDLEKSEER 91 (270)
Q Consensus 66 ~~e~~~~~l~~r~~~le~el~~~~~~ 91 (270)
+++..++.+-.+...++.++.++..-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 110
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.96 E-value=1.5e+02 Score=23.43 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAA 73 (270)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 73 (270)
+..++..+......+...+..++.++..+..+++.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333444444444444444444444
No 111
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.93 E-value=1.9e+02 Score=20.23 Aligned_cols=48 Identities=17% Similarity=0.007 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHH
Q psy1411 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAED 167 (270)
Q Consensus 120 ~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~ 167 (270)
+..+...+......+..+...+......+-++..+.++++.=.+.+..
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~ 123 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTA 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555544444433
No 112
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.60 E-value=3.6e+02 Score=23.34 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 47 KKNLDQAVKDLEEREKALAAAESEV 71 (270)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~e~~~ 71 (270)
-...+.+..++..++.+.+.+..++
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333333
No 113
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.63 E-value=1.7e+02 Score=19.35 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHhhHHhHHH
Q psy1411 3 AIKKKMQAMKMEKDSAMDKAD 23 (270)
Q Consensus 3 ~i~~kl~~l~~e~~~~~~~~~ 23 (270)
+|.++|..|..+++.....-+
T Consensus 19 kL~~Ki~el~~ei~ke~~~re 39 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQRE 39 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777666644433
No 114
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=22.27 E-value=49 Score=18.61 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411 159 EDELEVAEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 159 ~~~l~~~e~r~~~~~~~~~~l~~~~ 183 (270)
..+|+++.++.+.++..+..|-...
T Consensus 5 QrELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 5 QRELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777766665544
No 115
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.15 E-value=1.2e+02 Score=17.31 Aligned_cols=6 Identities=33% Similarity=0.324 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy1411 63 ALAAAE 68 (270)
Q Consensus 63 ~~~~~e 68 (270)
.+++++
T Consensus 32 ~lskLE 37 (54)
T 1deb_A 32 HLTKLE 37 (54)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.58 E-value=4.1e+02 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=10.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHH
Q psy1411 112 MCKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 112 ~~~~l~~~~~~~e~~~~~le~~l 134 (270)
+.+.+..++..++..+..++..+
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 117
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.23 E-value=86 Score=15.25 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=10.2
Q ss_pred hHHhHHHHHHHHHHHHHHHH
Q psy1411 17 SAMDKADTCEGQAKDANLRA 36 (270)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~ 36 (270)
.++.++.++++.++.++..+
T Consensus 5 alekkcaalesklqalekkl 24 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444
No 118
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.05 E-value=1e+02 Score=16.03 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 66 AAESEVAALNRKVQMIEEDLEKSE 89 (270)
Q Consensus 66 ~~e~~~~~l~~r~~~le~el~~~~ 89 (270)
+++..++.+-.+...++.++.++.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444555555544443
No 119
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.99 E-value=1e+02 Score=16.17 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 66 AAESEVAALNRKVQMIEEDLEKSEERS 92 (270)
Q Consensus 66 ~~e~~~~~l~~r~~~le~el~~~~~~l 92 (270)
+++..++.+-.+...++.++.++..-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.69 E-value=4.4e+02 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=8.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q psy1411 114 KVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 114 ~~l~~~~~~~e~~~~~le~~l 134 (270)
+.+..++..++..+..++..+
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 121
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.62 E-value=1.7e+02 Score=18.41 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEEL 183 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~ 183 (270)
.+++..+..+..++..++..+.-|+.++
T Consensus 41 ~sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 41 MSCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444443
No 122
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=20.19 E-value=1.7e+02 Score=18.28 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411 156 AFVEDELEVAEDRVKSGDAKIMELEEELK 184 (270)
Q Consensus 156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~ 184 (270)
.+++..+..+..++..++..+.-|+.++.
T Consensus 41 ~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 41 LSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555554443
No 123
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.17 E-value=2.3e+02 Score=19.79 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=0.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhh
Q psy1411 148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGN 188 (270)
Q Consensus 148 ~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~ 188 (270)
+.+...++...+.....++.++..++.+...+..+++.+..
T Consensus 11 LqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp ----------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444455555555555566666666666666555555333
Done!