Query psy1411
Match_columns 270
No_of_seqs 211 out of 1011
Neff 9.7
Searched_HMMs 13730
Date Fri Aug 16 19:48:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 69.6 13 0.00094 24.9 17.4 27 165-191 135-161 (185)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 66.5 13 0.00093 23.6 13.0 32 161-192 9-40 (107)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 36.9 49 0.0036 21.4 11.8 35 229-263 94-128 (133)
4 d1k4ta1 a.2.8.1 (A:641-712) Eu 36.4 37 0.0027 19.7 7.4 20 1-20 4-23 (72)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.1 67 0.0049 20.6 14.1 32 71-102 90-121 (133)
6 d1seta1 a.2.7.1 (A:1-110) Sery 26.8 68 0.005 19.9 9.2 22 113-134 73-94 (110)
7 d2azeb1 e.63.1.2 (B:201-301) T 25.6 72 0.0052 19.8 6.1 33 7-39 2-34 (101)
8 d1ez3a_ a.47.2.1 (A:) Syntaxin 24.8 79 0.0058 20.0 10.8 23 126-148 94-116 (124)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 17.7 1E+02 0.0074 18.4 4.5 54 85-138 33-87 (89)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 13.7 1.3E+02 0.0092 17.7 6.7 39 43-81 47-85 (88)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=69.60 E-value=13 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=10.1
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411 165 AEDRVKSGDAKIMELEEELKVVGNSLK 191 (270)
Q Consensus 165 ~e~r~~~~~~~~~~l~~~~~~~~~~l~ 191 (270)
+...+......+..+...+..+...+.
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~l~~~~~ 161 (185)
T d2ap3a1 135 LFKYLNQNDATQQGVNEKSKAIEQNYK 161 (185)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=66.54 E-value=13 Score=23.61 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192 (270)
Q Consensus 161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~ 192 (270)
.+..+...+..+..++..+...+.....-+..
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.93 E-value=49 Score=21.35 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy1411 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDST 263 (270)
Q Consensus 229 e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~ 263 (270)
...+..+...+..+...+..+...+..+...+..+
T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 4
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.35 E-value=37 Score=19.74 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHhHhhHHh
Q psy1411 1 MDAIKKKMQAMKMEKDSAMD 20 (270)
Q Consensus 1 ~~~i~~kl~~l~~e~~~~~~ 20 (270)
|+.++.+|+.-+.++..+..
T Consensus 4 MenLq~KI~~Kk~qi~~a~~ 23 (72)
T d1k4ta1 4 MMNLQTKIDAKKEQLADARR 23 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544433
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.12 E-value=67 Score=20.59 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102 (270)
Q Consensus 71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~ 102 (270)
..-+.+|+..++..+..+...+..+...+..+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l 121 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=26.78 E-value=68 Score=19.89 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=8.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHH
Q psy1411 113 CKVLENRSQQDEERMDQLTNQL 134 (270)
Q Consensus 113 ~~~l~~~~~~~e~~~~~le~~l 134 (270)
.+.+..++..++..+..++..+
T Consensus 73 ~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 73 GKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.60 E-value=72 Score=19.75 Aligned_cols=33 Identities=0% Similarity=0.058 Sum_probs=16.2
Q ss_pred HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHh
Q psy1411 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKV 39 (270)
Q Consensus 7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~ 39 (270)
++..|+.|++.+...-..+...+......+..+
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~l 34 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666665555444444444444444333
No 8
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.79 E-value=79 Score=19.96 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhH
Q psy1411 126 RMDQLTNQLKEARLLAEDADAKS 148 (270)
Q Consensus 126 ~~~~le~~l~~~~~~~~~~~~~~ 148 (270)
....+...|.++...+..+...|
T Consensus 94 q~~~L~~kf~e~m~~yq~~q~~y 116 (124)
T d1ez3a_ 94 QHSTLSRKFVEVMSEYNATQSDY 116 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.69 E-value=1e+02 Score=18.44 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy1411 85 LEKSEERSGTATAKLAEASQAADEAN-RMCKVLENRSQQDEERMDQLTNQLKEAR 138 (270)
Q Consensus 85 l~~~~~~l~~~~~~l~~~e~~~~~~~-~~~~~l~~~~~~~e~~~~~le~~l~~~~ 138 (270)
+..++..++++..-|..++-.+..++ .....+..++......+..+...|..++
T Consensus 33 l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 33 VANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.72 E-value=1.3e+02 Score=17.65 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMI 81 (270)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~l 81 (270)
+..+...+..++.....+......+......+..++..+
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!